Citrus Sinensis ID: 025508

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MAATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNSSSQEG
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
maatsddgmESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKmaehnrdltsvrSVETLKLKIMKLRKENEILKRKLNSSSQEG
Flexible Loop (DISEMBL)
maatsddgmesLLSDFDQIYEDFKRAISEVQLLrsscnaetkrrealeitcntlkkenerarnsyTESLENLADQLERKAKCQSLKeelkrvndehlskeyelrkVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEknelnkrvqDLEKELLMNrtkmaehnrdltsvrsvetLKLKIMKlrkeneilkrklnsssqeg
Low Complexity Region (SEG)
MAATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCllleqeeknelnkRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNSSSQEG
Disordered region (IsUnstruct)
**************DFDQIYEDFKRAISEVQLLRS*************IT***************************************************ELRKVIDSIKQDYAAKARDFEDQIRSLMLE*****ATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLE******************************************************************
Disordered Region (DISOPRED)
***************************SEV*****************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*********ESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKR*********
Disordered Region (DISPRO)
******DGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLN******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLRKVIDSIxxxxxxxxxxxxxxxxxxxxxKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTSVRSxxxxxxxxxxxxxxxxxxxxxxxxxxxxG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q1PE49	247	Protein At-4/1 OS=Arabido	yes	no	0.984	1.0	0.607	6e-76

>sp|Q1PE49|4ON1_ARATH Protein At-4/1 OS=Arabidopsis thaliana GN=At4g26020 PE=1 SV=1

 Score =  283 bits (725), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 150/247 (60%), Positives = 190/247 (76%)

Query: 1   MAATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENER 60
           MAATSD+ M  LLS FDQIYEDFK  ++E+ + RS  N E+ RRE LEI+   LK+ENER
Sbjct: 1   MAATSDEQMNLLLSSFDQIYEDFKIGLNEINVYRSKSNVESSRREVLEISNKNLKEENER 60

Query: 61  ARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARD 120
            +  YTESL N ADQLE + KC SLKEELKRVNDE+ SKE+E R  ++S++Q +  K  +
Sbjct: 61  LKKLYTESLNNFADQLEHRTKCHSLKEELKRVNDENKSKEHEHRNALESLRQKHVTKVEE 120

Query: 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180
            E +IRSL++EKATN+  I  L QDL A+K H+Q ++KKLD+V  +VE KY LEIQDLKD
Sbjct: 121 LEYKIRSLLVEKATNDMVIDRLRQDLTANKSHIQAMSKKLDRVVTEVECKYELEIQDLKD 180

Query: 181 CLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
           CLL+EQ EKN+++ ++Q L+KELL++RT +AE  RD TS R VETLK K+MKLRKENEIL
Sbjct: 181 CLLMEQAEKNDISNKLQSLQKELLISRTSIAEKQRDTTSNRQVETLKQKLMKLRKENEIL 240

Query: 241 KRKLNSS 247
           KRKL+SS
Sbjct: 241 KRKLSSS 247

Involved in intra- and inter-cellular trafficking through plasmodesmata (PD).
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
297735469	250	unnamed protein product [Vitis vinifera]	0.996	1.0	0.645	7e-84
359485132	244	PREDICTED: protein At-4/1-like [Vitis vi	0.968	0.995	0.658	2e-83
224144315	257	predicted protein [Populus trichocarpa]	0.996	0.972	0.620	1e-78
255583551	252	conserved hypothetical protein [Ricinus	0.996	0.992	0.621	2e-78
116831393	248	unknown [Arabidopsis thaliana]	0.988	1.0	0.604	3e-74
42567155	247	uncharacterized protein [Arabidopsis tha	0.984	1.0	0.607	4e-74
297799400	247	hypothetical protein ARALYDRAFT_492214 [	0.984	1.0	0.595	4e-71
28207766	242	4/1 protein [Arabidopsis thaliana]	0.964	1.0	0.595	9e-71
356530344	251	PREDICTED: protein At-4/1-like [Glycine	0.996	0.996	0.577	2e-68
157742151	250	4/1 protein short form [Nicotiana tabacu	0.976	0.98	0.530	7e-64

>gi|297735469|emb|CBI17909.3| unnamed protein product [Vitis vinifera]

 Score =  316 bits (809), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 162/251 (64%), Positives = 207/251 (82%), Gaps = 1/251 (0%)

Query: 1   MAATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENER 60
           MAATSD+ MESLLS FDQIY+DF+  + EVQLLRS+CN E ++R+AL+ TC++LK++NER
Sbjct: 1   MAATSDEEMESLLSTFDQIYKDFQNGVVEVQLLRSNCNVEIEKRQALQSTCDSLKQDNER 60

Query: 61  ARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARD 120
            R  YTESL  LA+QLER+ KCQSLKEELKRVNDEHLSKE E RK I+ ++Q++A K  D
Sbjct: 61  LRKLYTESLYKLAEQLERRTKCQSLKEELKRVNDEHLSKEDEHRKAIEMLQQNHAIKVGD 120

Query: 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180
            E+QIR L+L+ A NEATI++LH+D AAHK H+Q L  +L+QV+FDVE KY  EIQDLKD
Sbjct: 121 LENQIRCLLLQIAANEATINHLHKDSAAHKTHIQALMNRLEQVQFDVESKYRQEIQDLKD 180

Query: 181 CLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
           CL++EQEE+N L K++Q+LEKELL++RTK+ E  RDL S R V+TLK KIMKLRKENE+L
Sbjct: 181 CLMVEQEERNVLTKKLQNLEKELLISRTKLVEQQRDLASNRHVDTLKQKIMKLRKENEVL 240

Query: 241 KRKLNSSSQEG 251
           KRK++  ++EG
Sbjct: 241 KRKVH-DAKEG 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485132|ref|XP_003633219.1| PREDICTED: protein At-4/1-like [Vitis vinifera]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 160/243 (65%), Positives = 201/243 (82%)

Query: 1   MAATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENER 60
           MAATSD+ MESLLS FDQIY+DF+  + EVQLLRS+CN E ++R+AL+ TC++LK++NER
Sbjct: 1   MAATSDEEMESLLSTFDQIYKDFQNGVVEVQLLRSNCNVEIEKRQALQSTCDSLKQDNER 60

Query: 61  ARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARD 120
            R  YTESL  LA+QLER+ KCQSLKEELKRVNDEHLSKE E RK I+ ++Q++A K  D
Sbjct: 61  LRKLYTESLYKLAEQLERRTKCQSLKEELKRVNDEHLSKEDEHRKAIEMLQQNHAIKVGD 120

Query: 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180
            E+QIR L+L+ A NEATI++LH+D AAHK H+Q L  +L+QV+FDVE KY  EIQDLKD
Sbjct: 121 LENQIRCLLLQIAANEATINHLHKDSAAHKTHIQALMNRLEQVQFDVESKYRQEIQDLKD 180

Query: 181 CLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
           CL++EQEE+N L K++Q+LEKELL++RTK+ E  RDL S R V+TLK KIMKLRKENE+L
Sbjct: 181 CLMVEQEERNVLTKKLQNLEKELLISRTKLVEQQRDLASNRHVDTLKQKIMKLRKENEVL 240

Query: 241 KRK 243
           KRK
Sbjct: 241 KRK 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144315|ref|XP_002325258.1| predicted protein [Populus trichocarpa] gi|222866692|gb|EEF03823.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/258 (62%), Positives = 198/258 (76%), Gaps = 8/258 (3%)

Query: 1   MAATSDDGMESLLSDFDQIYE-------DFKRAISEVQLLRSSCNAETKRREALEITCNT 53
           MAAT D+ + SLLS FD IYE       DFK  I+E+Q LRS+ NAE K+ EALE TC +
Sbjct: 1   MAATIDEEINSLLSSFDHIYEALKNLLSDFKNGITEIQTLRSNLNAEIKKTEALEFTCKS 60

Query: 54  LKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQD 113
           L +ENER R  YT SL NLA++LER+ KC SL EELKR+ DE ++KE E +K ++ +K+D
Sbjct: 61  LNQENERLRKLYTGSLNNLAEELERRTKCVSLNEELKRLRDELINKEDEHKKAVELLKKD 120

Query: 114 YAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNL 173
           Y  K  + EDQIR  +L K TNEAT+++L QDLAAHK HMQTLA +LD+V F+VE KY+L
Sbjct: 121 YTTKVGELEDQIRGFLLGKETNEATVTHLRQDLAAHKAHMQTLANRLDRVAFEVESKYHL 180

Query: 174 EIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKL 233
           E+QDLKDCL++EQEEKNELNK++Q LEKELL+++TK  E  +DL S R VETLK KIMKL
Sbjct: 181 ELQDLKDCLMIEQEEKNELNKKLQGLEKELLISKTKRVEQQQDLASSRLVETLKQKIMKL 240

Query: 234 RKENEILKRKLNSSSQEG 251
           RKENEILKRKL S S+EG
Sbjct: 241 RKENEILKRKL-SHSEEG 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583551|ref|XP_002532532.1| conserved hypothetical protein [Ricinus communis] gi|223527744|gb|EEF29848.1| conserved hypothetical protein [Ricinus communis]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/251 (62%), Positives = 198/251 (78%), Gaps = 1/251 (0%)

Query: 1   MAATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENER 60
           M  TSD  M+SLL  FDQIYEDFK  I+E+Q LRS+ NAE K+REALE+TC +LK+ENER
Sbjct: 1   MVVTSDQEMDSLLCSFDQIYEDFKSGITEIQCLRSNWNAEIKKREALELTCQSLKQENER 60

Query: 61  ARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARD 120
               YTES  N+A +L+ + K QSLKEE+KR+NDE+L KE E  K ++ +KQ+Y  K   
Sbjct: 61  LVKLYTESFTNMAGELDCRVKYQSLKEEVKRLNDENLRKEQEHSKTVELLKQEYETKVGG 120

Query: 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180
            EDQ+R L+++KAT+E+TI  L QDL+AHK ++QTLA  L++V+FDVE KY+LE QDLKD
Sbjct: 121 LEDQLRGLLVDKATSESTIMKLRQDLSAHKTYIQTLANTLERVRFDVESKYHLETQDLKD 180

Query: 181 CLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
           CLL+E EEKNELNK++QDL+KEL+++RTK+ E  +DL+S R VETLK KIMKLRKENEIL
Sbjct: 181 CLLVEYEEKNELNKKLQDLQKELMISRTKLVEQKQDLSSNRFVETLKAKIMKLRKENEIL 240

Query: 241 KRKLNSSSQEG 251
           KRKL S S EG
Sbjct: 241 KRKL-SHSVEG 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831393|gb|ABK28649.1| unknown [Arabidopsis thaliana]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 150/248 (60%), Positives = 190/248 (76%)

Query: 1   MAATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENER 60
           MAATSD+ M  LLS FDQIYEDFK  ++E+ + RS  N E+ RRE LEI+   LK+ENER
Sbjct: 1   MAATSDEQMNLLLSSFDQIYEDFKIGLNEINVYRSKSNVESSRREVLEISNKNLKEENER 60

Query: 61  ARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARD 120
            +  YTESL N ADQLE + KC SLKEELKRVNDE+ SKE+E R  ++S++Q +  K  +
Sbjct: 61  LKKLYTESLNNFADQLEHRTKCHSLKEELKRVNDENKSKEHEHRNALESLRQKHVTKVEE 120

Query: 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180
            E +IRSL++EKATN+  I  L QDL A+K H+Q ++KKLD+V  +VE KY LEIQDLKD
Sbjct: 121 LEYKIRSLLVEKATNDMVIDRLRQDLTANKSHIQAMSKKLDRVVTEVECKYELEIQDLKD 180

Query: 181 CLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
           CLL+EQ EKN+++ ++Q L+KELL++RT +AE  RD TS R VETLK K+MKLRKENEIL
Sbjct: 181 CLLMEQAEKNDISNKLQSLQKELLISRTSIAEKQRDTTSNRQVETLKQKLMKLRKENEIL 240

Query: 241 KRKLNSSS 248
           KRKL+SS 
Sbjct: 241 KRKLSSSG 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567155|ref|NP_194332.2| uncharacterized protein [Arabidopsis thaliana] gi|122180106|sp|Q1PE49.1|4ON1_ARATH RecName: Full=Protein At-4/1; AltName: Full=Tomato spotted wilt virus movement protein-interacting protein 4/1; Short=At-4/1 gi|91806726|gb|ABE66090.1| unknown [Arabidopsis thaliana] gi|332659745|gb|AEE85145.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 150/247 (60%), Positives = 190/247 (76%)

Query: 1   MAATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENER 60
           MAATSD+ M  LLS FDQIYEDFK  ++E+ + RS  N E+ RRE LEI+   LK+ENER
Sbjct: 1   MAATSDEQMNLLLSSFDQIYEDFKIGLNEINVYRSKSNVESSRREVLEISNKNLKEENER 60

Query: 61  ARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARD 120
            +  YTESL N ADQLE + KC SLKEELKRVNDE+ SKE+E R  ++S++Q +  K  +
Sbjct: 61  LKKLYTESLNNFADQLEHRTKCHSLKEELKRVNDENKSKEHEHRNALESLRQKHVTKVEE 120

Query: 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180
            E +IRSL++EKATN+  I  L QDL A+K H+Q ++KKLD+V  +VE KY LEIQDLKD
Sbjct: 121 LEYKIRSLLVEKATNDMVIDRLRQDLTANKSHIQAMSKKLDRVVTEVECKYELEIQDLKD 180

Query: 181 CLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
           CLL+EQ EKN+++ ++Q L+KELL++RT +AE  RD TS R VETLK K+MKLRKENEIL
Sbjct: 181 CLLMEQAEKNDISNKLQSLQKELLISRTSIAEKQRDTTSNRQVETLKQKLMKLRKENEIL 240

Query: 241 KRKLNSS 247
           KRKL+SS
Sbjct: 241 KRKLSSS 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799400|ref|XP_002867584.1| hypothetical protein ARALYDRAFT_492214 [Arabidopsis lyrata subsp. lyrata] gi|297313420|gb|EFH43843.1| hypothetical protein ARALYDRAFT_492214 [Arabidopsis lyrata subsp. lyrata]

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 147/247 (59%), Positives = 188/247 (76%)

Query: 1   MAATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENER 60
           MAATSD+ M  LLS FDQIYEDFK  ++E+ + RS  N E+ RRE LEI+   LK+ENER
Sbjct: 1   MAATSDEQMNLLLSCFDQIYEDFKIGLNEINVYRSKSNVESSRREVLEISNKNLKQENER 60

Query: 61  ARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARD 120
            +   TESL N ADQLE + KC SLKEELKRV DE+ SKE EL   ++ ++Q +  K  +
Sbjct: 61  LKKLSTESLNNFADQLEHRTKCHSLKEELKRVIDENKSKELELGNALELLRQKHVTKVEE 120

Query: 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180
            E++IRSL++EKATN+  I  L QDL A+K H+Q ++KKLD+V  +VE KY LEIQ+LKD
Sbjct: 121 LENKIRSLLVEKATNDMVIDRLRQDLTANKSHIQAMSKKLDRVVTEVECKYELEIQELKD 180

Query: 181 CLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
           CLL+EQEEKN+++ ++Q L+KELL++RT +AE  RD TS R VETLK K+MKLRKENEIL
Sbjct: 181 CLLMEQEEKNDISNKLQSLQKELLISRTSIAEKQRDTTSNRQVETLKQKLMKLRKENEIL 240

Query: 241 KRKLNSS 247
           KRKL+SS
Sbjct: 241 KRKLSSS 247

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28207766|gb|AAO32317.1| 4/1 protein [Arabidopsis thaliana]

 Score =  272 bits (696), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 144/242 (59%), Positives = 185/242 (76%)

Query: 6   DDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSY 65
           D+ M  LLS FDQIYEDFK  ++E+ + RS  N E+ RRE LEI+   LK+ENER +  Y
Sbjct: 1   DEQMNLLLSSFDQIYEDFKIGLNEINVYRSKSNVESSRREVLEISNKNLKEENERLKKLY 60

Query: 66  TESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQI 125
           TESL N ADQLE + KC SLKEELKRVNDE+ SKE+E R  ++S++Q +  K  + E +I
Sbjct: 61  TESLNNFADQLEHRTKCHSLKEELKRVNDENKSKEHEHRNALESLRQKHVTKVEELEYKI 120

Query: 126 RSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLE 185
           RSL++EKATN+  I  L QDL A+K H+Q ++KKLD+V  +VE KY LEIQDLKDCLL+E
Sbjct: 121 RSLLVEKATNDMVIDRLRQDLTANKSHIQAMSKKLDRVVTEVECKYELEIQDLKDCLLME 180

Query: 186 QEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLN 245
           Q E+N+++ ++Q L+KELL++RT +AE  RD TS R VETLK K+MKLRKENEILKRKL+
Sbjct: 181 QAERNDISNKLQSLQKELLISRTSIAEKQRDTTSNRQVETLKQKLMKLRKENEILKRKLS 240

Query: 246 SS 247
           SS
Sbjct: 241 SS 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530344|ref|XP_003533742.1| PREDICTED: protein At-4/1-like [Glycine max]

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 145/251 (57%), Positives = 192/251 (76%), Gaps = 1/251 (0%)

Query: 1   MAATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENER 60
           MAATSD+ MESLLS FDQIYED K  ISE+QLL+S+ NAE K RE+L+I+ N LK+EN+ 
Sbjct: 1   MAATSDEEMESLLSAFDQIYEDAKSGISEMQLLQSNYNAEFKMRESLQISSNALKRENDS 60

Query: 61  ARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARD 120
               Y+ESL+NLADQL+ + KC +LKEEL+R N+E L KE+  RK ++ +K++Y  K   
Sbjct: 61  LTKLYSESLKNLADQLDYRTKCLNLKEELERANNEVLLKEHGHRKDVELLKREYEQKIVC 120

Query: 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180
            E Q++  + EKAT EAT++ LH DLAAHK HMQ LA +LDQ+  +VE+KYN E+QDL+ 
Sbjct: 121 LEAQVKESVHEKATYEATVNQLHGDLAAHKSHMQVLAMRLDQIHDEVELKYNSEVQDLRV 180

Query: 181 CLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
           CL +EQEEKN+LN+++Q+LEKELL+ + K+ +  +++TS   VETLK KIMKLRKENE+L
Sbjct: 181 CLAVEQEEKNDLNRKIQNLEKELLICKAKLVDQQQEMTSNWHVETLKQKIMKLRKENEVL 240

Query: 241 KRKLNSSSQEG 251
           KRK  S SQE 
Sbjct: 241 KRKF-SHSQES 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157742151|gb|ABV69698.1| 4/1 protein short form [Nicotiana tabacum]

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 130/245 (53%), Positives = 177/245 (72%)

Query: 1   MAATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENER 60
           MAAT+D+ MESLLS FDQIY++FK    E+Q L++     + +REALE T   L+ EN+R
Sbjct: 1   MAATTDEAMESLLSSFDQIYDEFKNGAVEIQTLQADYITGSTKREALEFTVQRLQSENDR 60

Query: 61  ARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARD 120
            R  Y ESL  LA ++E  + CQSLKE+LK V+ E L KE E R+ I+S+K+D+A + ++
Sbjct: 61  LRKLYAESLNTLAYKIESHSSCQSLKEDLKGVHHEFLQKENEYRRTIESLKRDHAERIQE 120

Query: 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180
            E QIR    E A NEATI+ L  DL  H+  ++ L + LDQV  +V+ +Y+ EIQ LKD
Sbjct: 121 LESQIRRYQTEDAVNEATINQLRHDLVVHRSQIEALRRNLDQVSAEVDSRYHYEIQGLKD 180

Query: 181 CLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
            LL+EQEEKNELNKR+QD+EKEL ++RTK+ E+ +DLTS + + TLK KIMKLRKENE+L
Sbjct: 181 SLLVEQEEKNELNKRLQDMEKELFISRTKLVEYQQDLTSSQHMHTLKQKIMKLRKENEVL 240

Query: 241 KRKLN 245
           KR+++
Sbjct: 241 KRQIH 245

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
ASPGD|ASPL0000042966	1153	AN2480 [Emericella nidulans (t	0.916	0.199	0.24	1.6e-07
UNIPROTKB|G4NH27	1389	MGG_03960 "Dynactin ro-3" [Mag	0.900	0.162	0.218	6.1e-07
UNIPROTKB|Q8IWJ2	1684	GCC2 "GRIP and coiled-coil dom	0.932	0.138	0.246	1e-06
ZFIN|ZDB-GENE-050531-1	1974	myh11a "myosin, heavy polypept	0.928	0.118	0.224	1.2e-06
MGI|MGI:1915428	1298	Cgnl1 "cingulin-like 1" [Mus m	0.980	0.189	0.210	2.9e-06
UNIPROTKB|F1NWN3	1951	MYH11 "Myosin-11" [Gallus gall	0.928	0.119	0.220	6.2e-06
UNIPROTKB|G1K307	1972	MYH11 "Myosin-11" [Gallus gall	0.928	0.118	0.220	6.2e-06
UNIPROTKB|E1BXA5	1979	MYH11 "Myosin-11" [Gallus gall	0.928	0.117	0.220	6.3e-06
UNIPROTKB|P10587	1979	MYH11 "Myosin-11" [Gallus gall	0.928	0.117	0.220	6.3e-06
SGD|S000003895	707	SGM1 "Protein of unknown funct	0.920	0.326	0.222	7.1e-06

ASPGD|ASPL0000042966 AN2480 [Emericella nidulans (taxid:162425)]

 Score = 148 (57.2 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 60/250 (24%), Positives = 116/250 (46%)

Query:     7 DGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREAL--EITCNTLKKENERA-RN 63
             +G + +LS+   + ++ K A + ++      +   K  E L  EI   T +  + ++  N
Sbjct:   807 EGKQKVLSELSNVQDELKTARARLREYEQQTSQLNKELEGLRDEIQLKTAQHSSAQSLMN 866

Query:    64 SYTESLENLADQL-ERKAKCQSLKEELK---RVNDEHLSKEYELRKVIDSIKQDYAAKAR 119
             S  +    L  Q+ E + +C+SL+EEL    R+  E   +   +R++++ I+    AKAR
Sbjct:   867 SMRDQASELGMQMKEARERCESLEEELADAHRLLSERTREGETMRRLLNDIEGRAEAKAR 926

Query:   120 DFEDQIRSLMLEK--ATNEATISNLHQ--DLAAHKMHMQTLAKKLDQVKFDVEMKYNLEI 175
             DF++++ + + E+  A +EA+     +  +L   K  ++ L K L   + D E   + + 
Sbjct:   927 DFKERMEAAIEERDRAEDEASAQGRRRARELEDLKAKLRDLEKALRSAEEDKEELEHSQ- 985

Query:   176 QDLKDCXXXXXXXXXXXXXRVQDLEKELLMNRTKM--AEHN-RDLTSV-----RSVETLK 227
             +D K                + D+++ +   R  +  +E N RDL        RSVE   
Sbjct:   986 KDWKRKRDHLEAQAETAVQELHDVQQAMARLREALDESEKNVRDLEKEKAELRRSVEQTN 1045

Query:   228 LKIMKLRKEN 237
              ++ K+RK N
Sbjct:  1046 SRLEKIRKSN 1055

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000042 "protein targeting to Golgi" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|G4NH27 MGG_03960 "Dynactin ro-3" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 144 (55.7 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 52/238 (21%), Positives = 106/238 (44%)

Query:     7 DGMESLLSDFDQIYE----DFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERAR 62
             + +E+L  + DQ+ E    D + A    ++L+   +    R E LE+    L++ENE   
Sbjct:   416 ESVENLQMEHDQVLELATLDREMAEETAEVLKQELSDVKMRLEELELEVEILREENEEFN 475

Query:    63 NSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFE 122
                +    + A  L+ +   + ++E L R+ D    +E E+++ I S++ D   +A D +
Sbjct:   476 KGISPEERSSAGWLQMERNNERMREALIRLRDMSQQQEKEMQEQIKSLELDLK-EAGDVQ 534

Query:   123 DQIRSLMLEKATNEATISNLHQDL----AAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDL 178
              Q+ +   + +T E  I +L   L     A +M      + + Q +   E+K   E++DL
Sbjct:   535 AQLEAAKEKLSTAENMIEDLRSQLETALGAEEMIEDLTDRNMSQAEKIEELK--AEVEDL 592

Query:   179 KDCXXXXXXXXXXXXXRVQDLEKELLMNRTKMAEHNRDLTSVR-SVETLKLKIMKLRK 235
             +                 ++L++E+      +AE  R  T    S+E ++  + + R+
Sbjct:   593 ESLKEIADELEANHVQHERELQEEIDFKNAVIAEQARRFTQQEESMEEMEYTLSRFRE 650

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IWJ2 GCC2 "GRIP and coiled-coil domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 64/260 (24%), Positives = 118/260 (45%)

Query:     4 TSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARN 63
             T  + +ESL S+ DQ+    +  I   +  ++      K+ E L++       E ERA N
Sbjct:   990 TVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDV-------EKERA-N 1041

Query:    64 SYTESLENLADQLERKA-KCQSLKEE----LKRVNDEHLSKEYELRKVIDSIKQDYAAKA 118
             ++   +E+L  QL     +C+++  +    L R+  E L    +L +V   I +   AKA
Sbjct:  1042 NFEHRIEDLTRQLRNSTLQCETINSDNEDLLARI--ETLQSNAKLLEV--QILEVQRAKA 1097

Query:   119 R-DFEDQIRSLMLEKATNE--ATISNLHQ---DLAAHKMHMQTLAKKLDQVKFDVEMK-- 170
               D E +   L  E+   E   T++ L +    L   K  +Q   ++L+ VK D +    
Sbjct:  1098 MVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKQKKQLQKTMQELELVKKDAQQTTL 1157

Query:   171 YNLEIQDLKDCXXXXXXXXXXXXXRVQDLEKELLMNRTKMAEHNRDLTSVRS-VETLKLK 229
              N+EI D +               +++DLE+E+ + + K      ++TS++S V+  + K
Sbjct:  1158 MNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEK 1217

Query:   230 IMKLRKENEILKRKLNSSSQ 249
               K+++     K++L  S Q
Sbjct:  1218 NTKIKQLLVKTKKELADSKQ 1237

GO:0000042 "protein targeting to Golgi" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0071955 "recycling endosome to Golgi transport" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0031023 "microtubule organizing center organization" evidence=IMP

GO:0034453 "microtubule anchoring" evidence=IMP

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0090161 "Golgi ribbon formation" evidence=IMP

GO:0034067 "protein localization to Golgi apparatus" evidence=IMP

GO:0006622 "protein targeting to lysosome" evidence=IMP

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0070861 "regulation of protein exit from endoplasmic reticulum" evidence=IMP

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IMP

GO:0034499 "late endosome to Golgi transport" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-050531-1 myh11a "myosin, heavy polypeptide 11, smooth muscle a" [Danio rerio (taxid:7955)]

 Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 56/249 (22%), Positives = 117/249 (46%)

Query:     9 MESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRRE----ALEITCNTLKKENERARNS 64
             M   + D ++  E+ + A  ++QL + +C+A+ K+ E     ++   N L+KE +     
Sbjct:   946 MHEQIKDLEEHLEEEEDARQKLQLEKVTCDAKIKKLEDDILIMDDQNNKLQKERKILEER 1005

Query:    65 YTESLENLADQLERKAKCQSLKEELKRVNDE---HLSKEYELRKVIDSIKQDYAAKARDF 121
               +   NLA++ E+      LK + + +  E    L KE + R+ +D  K+   A++ D 
Sbjct:  1006 IADFSSNLAEEEEKSKNLTKLKNKHESMISELEVRLKKEEKTRQELDKAKRKLEAESNDL 1065

Query:   122 EDQIRSLMLEKATNEATISNLHQDLAAHKMHMQT-LAKKLDQVKFDVEMKYNLEIQDLKD 180
             ++QI  L  + A  +A ++   ++L A    ++    +K + +K   E++ +  I DL++
Sbjct:  1066 QEQIADLQAQIADLKAQLAKKEEELQAALARLEDETGQKNNALKKIRELEGH--ISDLQE 1123

Query:   181 CXXXXXXXXXXXXXRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
                             +DL +EL   ++++ E   D T+ +     +L+  K  +E  +L
Sbjct:  1124 DLESERAARNKAEKTKRDLGEELEALKSEL-EDTLDTTATQQ----ELRA-KREQEVTLL 1177

Query:   241 KRKLNSSSQ 249
             KR +   S+
Sbjct:  1178 KRAIEDESR 1186

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030860 "regulation of polarized epithelial cell differentiation" evidence=IMP

GO:0048546 "digestive tract morphogenesis" evidence=IMP

GO:0048565 "digestive tract development" evidence=IMP

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1915428 Cgnl1 "cingulin-like 1" [Mus musculus (taxid:10090)]

 Score = 138 (53.6 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 54/256 (21%), Positives = 113/256 (44%)

Query:     2 AATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITC--NTLKKENE 59
             AA     ME +  D  Q  E  ++  SEVQ L  +      R+E  E TC    L+KE E
Sbjct:   842 AAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEAL--VHARKEEKEATCARRALEKELE 899

Query:    60 RARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQ---DYAA 116
             +A+   ++  +   + LE+       KE+L+++ +E  S+ + L K I  +++   D A 
Sbjct:   900 QAQRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIQKLQKEMADIAE 959

Query:   117 KARDFEDQIRSLMLE-KATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEI 175
              +R    +++  + E K  N   ++ +   L    + ++       +++ ++ +K   E+
Sbjct:   960 ASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEE-EL 1018

Query:   176 QDLKDCXXXXXXXXXXXXXRVQDLEKELLMNRTKMAEHNRDLTSVRS-VETLKLKIMKLR 234
             QD +                ++DLE EL        + +R +  +   V  L++++ + R
Sbjct:  1019 QDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEER 1078

Query:   235 KENEILKRKLNSSSQE 250
                ++L  ++  S ++
Sbjct:  1079 TNADLLSERITWSREQ 1094

GO:0003674 "molecular_function" evidence=ND

GO:0003774 "motor activity" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0016459 "myosin complex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0043296 "apical junction complex" evidence=IDA

UNIPROTKB|F1NWN3 MYH11 "Myosin-11" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 55/249 (22%), Positives = 117/249 (46%)

Query:     9 MESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRRE----ALEITCNTLKKENERARNS 64
             M+  + D ++  E+ + A  ++QL + + + + K+ E     +E   N L KE +     
Sbjct:   935 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 994

Query:    65 YTESLENLADQLERKAKCQSLKEELKRVNDE---HLSKEYELRKVIDSIKQDYAAKARDF 121
              ++   NLA++ E+      LK + + +  E    L KE + R+ ++ IK+    ++ D 
Sbjct:   995 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1054

Query:   122 EDQIRSLMLEKATNEATISNLHQDLAAHKMHMQT-LAKKLDQVKFDVEMKYNLEIQDLKD 180
              +QI  L  + A  +A ++   ++L A    ++   ++K + +K   E++ +  I DL++
Sbjct:  1055 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH--ISDLQE 1112

Query:   181 CXXXXXXXXXXXXXRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
                           + +DL +EL   +T++ E   D T+ +     +L+  K  +E  +L
Sbjct:  1113 DLESEKAARNKAEKQKRDLSEELEALKTEL-EDTLDTTATQQ----ELRA-KREQEVTVL 1166

Query:   241 KRKLNSSSQ 249
             KR L   ++
Sbjct:  1167 KRALEEETR 1175

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|G1K307 MYH11 "Myosin-11" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 55/249 (22%), Positives = 117/249 (46%)

Query:     9 MESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRRE----ALEITCNTLKKENERARNS 64
             M+  + D ++  E+ + A  ++QL + + + + K+ E     +E   N L KE +     
Sbjct:   947 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1006

Query:    65 YTESLENLADQLERKAKCQSLKEELKRVNDE---HLSKEYELRKVIDSIKQDYAAKARDF 121
              ++   NLA++ E+      LK + + +  E    L KE + R+ ++ IK+    ++ D 
Sbjct:  1007 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1066

Query:   122 EDQIRSLMLEKATNEATISNLHQDLAAHKMHMQT-LAKKLDQVKFDVEMKYNLEIQDLKD 180
              +QI  L  + A  +A ++   ++L A    ++   ++K + +K   E++ +  I DL++
Sbjct:  1067 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH--ISDLQE 1124

Query:   181 CXXXXXXXXXXXXXRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
                           + +DL +EL   +T++ E   D T+ +     +L+  K  +E  +L
Sbjct:  1125 DLESEKAARNKAEKQKRDLSEELEALKTEL-EDTLDTTATQQ----ELRA-KREQEVTVL 1178

Query:   241 KRKLNSSSQ 249
             KR L   ++
Sbjct:  1179 KRALEEETR 1187

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|E1BXA5 MYH11 "Myosin-11" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 55/249 (22%), Positives = 117/249 (46%)

Query:     9 MESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRRE----ALEITCNTLKKENERARNS 64
             M+  + D ++  E+ + A  ++QL + + + + K+ E     +E   N L KE +     
Sbjct:   954 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1013

Query:    65 YTESLENLADQLERKAKCQSLKEELKRVNDE---HLSKEYELRKVIDSIKQDYAAKARDF 121
              ++   NLA++ E+      LK + + +  E    L KE + R+ ++ IK+    ++ D 
Sbjct:  1014 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1073

Query:   122 EDQIRSLMLEKATNEATISNLHQDLAAHKMHMQT-LAKKLDQVKFDVEMKYNLEIQDLKD 180
              +QI  L  + A  +A ++   ++L A    ++   ++K + +K   E++ +  I DL++
Sbjct:  1074 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH--ISDLQE 1131

Query:   181 CXXXXXXXXXXXXXRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
                           + +DL +EL   +T++ E   D T+ +     +L+  K  +E  +L
Sbjct:  1132 DLESEKAARNKAEKQKRDLSEELEALKTEL-EDTLDTTATQQ----ELRA-KREQEVTVL 1185

Query:   241 KRKLNSSSQ 249
             KR L   ++
Sbjct:  1186 KRALEEETR 1194

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|P10587 MYH11 "Myosin-11" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 55/249 (22%), Positives = 117/249 (46%)

Query:     9 MESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRRE----ALEITCNTLKKENERARNS 64
             M+  + D ++  E+ + A  ++QL + + + + K+ E     +E   N L KE +     
Sbjct:   954 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1013

Query:    65 YTESLENLADQLERKAKCQSLKEELKRVNDE---HLSKEYELRKVIDSIKQDYAAKARDF 121
              ++   NLA++ E+      LK + + +  E    L KE + R+ ++ IK+    ++ D 
Sbjct:  1014 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1073

Query:   122 EDQIRSLMLEKATNEATISNLHQDLAAHKMHMQT-LAKKLDQVKFDVEMKYNLEIQDLKD 180
              +QI  L  + A  +A ++   ++L A    ++   ++K + +K   E++ +  I DL++
Sbjct:  1074 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH--ISDLQE 1131

Query:   181 CXXXXXXXXXXXXXRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEIL 240
                           + +DL +EL   +T++ E   D T+ +     +L+  K  +E  +L
Sbjct:  1132 DLESEKAARNKAEKQKRDLSEELEALKTEL-EDTLDTTATQQ----ELRA-KREQEVTVL 1185

Query:   241 KRKLNSSSQ 249
             KR L   ++
Sbjct:  1186 KRALEEETR 1194

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=ISS

GO:0048251 "elastic fiber assembly" evidence=ISS

GO:0048739 "cardiac muscle fiber development" evidence=ISS

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=ISS

GO:0030016 "myofibril" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=IEA

GO:0030485 "smooth muscle contractile fiber" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006939 "smooth muscle contraction" evidence=ISS

SGD|S000003895 SGM1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 132 (51.5 bits), Expect = 7.1e-06, P = 7.1e-06
 Identities = 55/247 (22%), Positives = 113/247 (45%)

Query:     5 SDDGMESL--LSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERAR 62
             +D   +S+   ++   +Y + +  ++E     +      K++E+LE     +K++++   
Sbjct:   210 NDSSAQSVENYNELQSLYHNIQGQLAEAT---NKLKDADKQKESLETLEKNIKEKDDLI- 265

Query:    63 NSYTESLENLADQLER-KAKCQSLKEELKRVNDEHLS----KEYELRKVIDSIKQDYAAK 117
                 +SL+N+   LE+ K++ Q+ K+ L+    + ++    K  +LR  +DS  Q+  AK
Sbjct:   266 TILQQSLDNMRTLLEKEKSEFQTEKKALQEATVDQVTTLETKLEQLRIELDSSTQNLDAK 325

Query:   118 A-RDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQ 176
             + RDF D  +S   EK       + L + L + K +  ++   L+    ++E ++   ++
Sbjct:   326 SNRDFVDDQQSYE-EKQHASFQYNRLKEQLESSKANWDSIEYALNTKIVNLENRFESTMK 384

Query:   177 DLKDCXXXXXXXXXXXXXRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKE 236
             +  D                + LEKE   N +K     +DL   R  ETLK  +  +  +
Sbjct:   385 EKNDIEEKYQTALRSSETLGKQLEKEK-ENHSKAVLEVKDLE--RRAETLKSSLQSISDD 441

Query:   237 NEILKRK 243
               +LK+K
Sbjct:   442 YNLLKKK 448

GO:0005794 "Golgi apparatus" evidence=IEA;IDA

GO:0030137 "COPI-coated vesicle" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1PE49	4ON1_ARATH	No assigned EC number	0.6072	0.9840	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 42/249 (16%), Positives = 99/249 (39%), Gaps = 9/249 (3%)

Query: 10  ESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESL 69
           E  L          +  + E++        + +  +          ++ +       E L
Sbjct: 687 EEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEEL 746

Query: 70  ENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLM 129
           E L ++LE   +     EE     +E L+K  E  + ++  +Q    +  + E+++    
Sbjct: 747 EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAE 806

Query: 130 LEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEK 189
                 E  + +L Q     +  ++ L +++++++ +   +   E+++L+  L   +EE 
Sbjct: 807 RRLDALERELESLEQRRERLEQEIEELEEEIEELE-EKLDELEEELEELEKELEELKEEL 865

Query: 190 NELNKRVQDLEKELLMNRTKMAEHNRDLTSVRS--------VETLKLKIMKLRKENEILK 241
            EL    ++LE EL     +  E   +L  + S        +E L+ ++ +L  + E L+
Sbjct: 866 EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLE 925

Query: 242 RKLNSSSQE 250
            +L    +E
Sbjct: 926 VELPELEEE 934

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.2
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.01
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.82
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.44
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.33
PRK02224	880	chromosome segregation protein; Provisional	97.28
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.22
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.05
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.78
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.57
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.33
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.71
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.5
PRK02224	880	chromosome segregation protein; Provisional	95.42
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	95.35
PHA02562	562	46 endonuclease subunit; Provisional	95.08
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.9
PRK03918	880	chromosome segregation protein; Provisional	94.58
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	94.56
PRK03918	880	chromosome segregation protein; Provisional	93.92
KOG4807	593	consensus F-actin binding protein, regulates actin	93.88
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	93.61
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	92.99
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	92.95
PRK09039	343	hypothetical protein; Validated	92.68
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	92.66
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	92.52
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.38
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	92.33
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	91.27
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	91.23
KOG0933	1174	consensus Structural maintenance of chromosome pro	89.79
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	89.47
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	88.01
PRK09039	343	hypothetical protein; Validated	87.7
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	87.65
PHA02562	562	46 endonuclease subunit; Provisional	87.54
PRK01156	895	chromosome segregation protein; Provisional	87.34
PRK10884	206	SH3 domain-containing protein; Provisional	87.31
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	87.18
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	86.96
KOG0996	1293	consensus Structural maintenance of chromosome pro	86.96
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	86.6
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	86.42
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	86.31
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	86.17
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	86.03
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	85.9
KOG4673	961	consensus Transcription factor TMF, TATA element m	85.89
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	85.62
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	85.55
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.52
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	85.3
PRK10869	553	recombination and repair protein; Provisional	85.18
PF10186	302	Atg14: UV radiation resistance protein and autopha	85.04
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	84.83
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	84.8
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	84.63
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	83.76
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	83.17
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	83.14
PRK11637	428	AmiB activator; Provisional	82.32
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	82.07
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	80.8
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	80.6
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	80.52

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.20  E-value=0.0018  Score=57.47  Aligned_cols=193  Identities=21%  Similarity=0.331  Sum_probs=116.1

Q ss_pred             HHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHH
Q 025508           28 SEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVI  107 (251)
Q Consensus        28 ~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~rai  107 (251)
                      .+|..||..+..++-.|-.|+..+.+|+.+.+.+++.|.+-+..+-.++...+-.     ++..      .-..+...++
T Consensus       103 ~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~-----e~~~------~~~~dL~~~L  171 (312)
T PF00038_consen  103 EELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTV-----EVDQ------FRSSDLSAAL  171 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---------------------------HHHHH
T ss_pred             HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccce-----eecc------cccccchhhh
Confidence            3455555555555555555555555555555555555555555444444211110     0000      0011223334


Q ss_pred             HHHhHHHHHhH--------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhH
Q 025508          108 DSIKQDYAAKA--------RDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLK  179 (251)
Q Consensus       108 e~Lk~~~~~~i--------~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLk  179 (251)
                      ..++..|+..+        +....+|..+-.+...+...+..++.++...+..|+.|...|+.+.... ..+...|.+|.
T Consensus       172 ~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~-~~Le~~l~~le  250 (312)
T PF00038_consen  172 REIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKN-ASLERQLRELE  250 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccch-hhhhhhHHHHH
Confidence            44444443322        2344566666666777888899999999999999999999999887763 56788888888


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHH
Q 025508          180 DCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILK  241 (251)
Q Consensus       180 D~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LK  241 (251)
                      ..+..+   ..+.+..+..++.++.=.|..+..|.++.      ..|=.--|.|=.|...-+
T Consensus       251 ~~~~~~---~~~~~~~i~~le~el~~l~~~~~~~~~ey------~~Ll~~K~~Ld~EIatYR  303 (312)
T PF00038_consen  251 QRLDEE---REEYQAEIAELEEELAELREEMARQLREY------QELLDVKLALDAEIATYR  303 (312)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH---HHHHHHhhhccchhHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHHHHH
Confidence            888754   45567778888999888888888888774      223333455555555443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR00606 rad50 rad50

Probab=98.01  E-value=0.0071  Score=64.48  Aligned_cols=162  Identities=17%  Similarity=0.166  Sum_probs=117.2

Q ss_pred             CCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHH---HHhHHHHHHHHHHHhhh
Q 025508            2 AATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERA---RNSYTESLENLADQLER   78 (251)
Q Consensus         2 aatsDEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRL---rklytEsL~~~a~qle~   78 (251)
                      .+.||+++++++.+|+..+..|...+.+++.-......+.   +.+......+-.+..+|   ...|.+-+......+.-
T Consensus       296 l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el---~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~  372 (1311)
T TIGR00606       296 FQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKER---RLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQS  372 (1311)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999887766655544444443   44444444444443333   34455555444444433


Q ss_pred             hHhhhHHH---------HHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 025508           79 KAKCQSLK---------EELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAH  149 (251)
Q Consensus        79 rtk~qsLk---------EEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaah  149 (251)
                      -+...++.         ..+..+.+.+..+-..+.++++.++..+...+..++.+|..+...++..+..+.....++...
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~  452 (1311)
T TIGR00606       373 LATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKK  452 (1311)
T ss_pred             HHHhcCcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322222         347777888888889999999999999999999999999999999999999999888888888


Q ss_pred             hHHHHHHHhhhhhHHHh
Q 025508          150 KMHMQTLAKKLDQVKFD  166 (251)
Q Consensus       150 k~hid~L~~~LeqV~~e  166 (251)
                      ..-+..+..+|+.+...
T Consensus       453 ~~~i~~~~~~l~~~~~~  469 (1311)
T TIGR00606       453 QEELKFVIKELQQLEGS  469 (1311)
T ss_pred             HHHHHHHHHHHhhcccC
Confidence            88888888888865544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.82  E-value=0.009  Score=53.05  Aligned_cols=194  Identities=23%  Similarity=0.344  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhh
Q 025508           18 QIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHL   97 (251)
Q Consensus        18 ~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~l   97 (251)
                      ++.-+..+.-.++..+|..|..+...|..++..+..|+++.+..          .+..++..+++++|++||.       
T Consensus        72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~----------~~~r~~le~~i~~L~eEl~-------  134 (312)
T PF00038_consen   72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEE----------TLARVDLENQIQSLKEELE-------  134 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh----------hhhHhHHHHHHHHHHHHHH-------
Confidence            33445555555566666666666555555555555555433321          2233445555666665554       


Q ss_pred             hhHHHHHHHHHHHhHHHHHhHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhh
Q 025508           98 SKEYELRKVIDSIKQDYAAKARDFEDQIR-SLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQ  176 (251)
Q Consensus        98 skE~Eh~raie~Lk~~~~~~i~~LE~qi~-~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIq  176 (251)
                                 -++.-|+..+.+|..++. ...++-  +...-..|..-|...++|.+..++   .-..+++..|+..|.
T Consensus       135 -----------fl~~~heeEi~~L~~~~~~~~~~e~--~~~~~~dL~~~L~eiR~~ye~~~~---~~~~e~e~~y~~k~~  198 (312)
T PF00038_consen  135 -----------FLKQNHEEEIEELREQIQSSVTVEV--DQFRSSDLSAALREIRAQYEEIAQ---KNREELEEWYQSKLE  198 (312)
T ss_dssp             -----------HHHHHHHHHHHTTSTT------------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             -----------HHHhhhhhhhhhhhhccccccceee--cccccccchhhhhhHHHHHHHHHh---hhhhhhhhhcccccc
Confidence                       355556666666666664 222211  111122244555555566655443   344578888888888


Q ss_pred             hhHHHHHH-------HHHHhHHHHHHHHHHHHHHHHhh---hhHHHhhhhhhhh--hhHHHHHHHHHhhhhhhHHHHhhh
Q 025508          177 DLKDCLLL-------EQEEKNELNKRVQDLEKELLMNR---TKMAEHNRDLTSV--RSVETLKLKIMKLRKENEILKRKL  244 (251)
Q Consensus       177 dLkD~L~~-------EqEeKn~l~~kLq~~ekElli~k---tK~~eqqrD~tS~--~hVetLKqKiMKLRKENE~LKR~l  244 (251)
                      +++.....       -.+|-..+..+++.++.++--.+   ..+..+.+|+-..  ..+..+...|..|..+...++-.+
T Consensus       199 ~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~  278 (312)
T PF00038_consen  199 ELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM  278 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence            87754433       34455556666666665543332   3344444444322  222334445555555544444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.44  E-value=0.23  Score=52.80  Aligned_cols=205  Identities=21%  Similarity=0.313  Sum_probs=113.2

Q ss_pred             hhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHH-------HHHhhhhHHhHHHHHHhHHHHHHHHHHHhhh
Q 025508            6 DDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREAL-------EITCNTLKKENERARNSYTESLENLADQLER   78 (251)
Q Consensus         6 DEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReAL-------E~tc~~Lk~dneRLrklytEsL~~~a~qle~   78 (251)
                      ++++..+-..++.+.+.+.....+|+.++.....=...-..+       ....+++..+..+++.-..+..++....-+.
T Consensus       245 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~  324 (1163)
T COG1196         245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER  324 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666677777777777777777776655443333333       3345666666666666555555553221111


Q ss_pred             ----hHhhh----------HHHHHHHhhhhhhhhhHHHHHH-------HHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHH
Q 025508           79 ----KAKCQ----------SLKEELKRVNDEHLSKEYELRK-------VIDSIKQDYAAKARDFEDQIRSLMLEKATNEA  137 (251)
Q Consensus        79 ----rtk~q----------sLkEEL~r~n~e~lskE~Eh~r-------aie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea  137 (251)
                          ..+..          .+.+++......+...-.++..       +++.....+......++.++..+..+...-..
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  404 (1163)
T COG1196         325 LEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR  404 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                11111          1233333333333333333333       34444455555556666666666666666666


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHH
Q 025508          138 TISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMA  211 (251)
Q Consensus       138 ~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~  211 (251)
                      .|..|...+.-....+..+..++..+..++.. -+.++.+++..+--=++..+++...+..++.++---++++.
T Consensus       405 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (1163)
T COG1196         405 EIESLEERLERLSERLEDLKEELKELEAELEE-LQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ  477 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666655 44556666666555555566666666666666544444433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.33  E-value=0.23  Score=50.28  Aligned_cols=47  Identities=13%  Similarity=0.172  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHH
Q 025508          118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVK  164 (251)
Q Consensus       118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~  164 (251)
                      +..|+.++..+..+...-+..+..+..++......++.|..+++...
T Consensus       800 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~  846 (1164)
T TIGR02169       800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK  846 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555544444444454444444444444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=97.28  E-value=0.26  Score=49.79  Aligned_cols=190  Identities=14%  Similarity=0.185  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHH---HHHHHHhhh----hHhhhHHHHHH
Q 025508           17 DQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESL---ENLADQLER----KAKCQSLKEEL   89 (251)
Q Consensus        17 d~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL---~~~a~qle~----rtk~qsLkEEL   89 (251)
                      ...+.+++....+++.+.........+...++.....+......+...+.+.-   .++...++.    +.+......++
T Consensus       240 ~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l  319 (880)
T PRK02224        240 DEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL  319 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            34445555555555555555555444444554444444444444444333322   122222211    11222223334


Q ss_pred             HhhhhhhhhhHHHHHHHHHHHh---HHHHHhHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHHhhHHHHHHHhh
Q 025508           90 KRVNDEHLSKEYELRKVIDSIK---QDYAAKARDFEDQIRSLM-------LEKATNEATISNLHQDLAAHKMHMQTLAKK  159 (251)
Q Consensus        90 ~r~n~e~lskE~Eh~raie~Lk---~~~~~~i~~LE~qi~~~~-------~q~at~Ea~I~qL~~dLaahk~hid~L~~~  159 (251)
                      ..-..++..+..+++..+..+.   ..+...+..|+..+..+.       .+....+..|..++.++.+...-++.+...
T Consensus       320 ~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~  399 (880)
T PRK02224        320 EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRER  399 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444443333332   233333444444443333       333334444444444444444444433333


Q ss_pred             hhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 025508          160 LDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNR  207 (251)
Q Consensus       160 LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~k  207 (251)
                      ++.+..+ --.|...|+++.+-+..-.+..+.+...+...++.+-..+
T Consensus       400 l~~~~~~-~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~  446 (880)
T PRK02224        400 FGDAPVD-LGNAEDFLEELREERDELREREAELEATLRTARERVEEAE  446 (880)
T ss_pred             Hhcchhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322211 0245556666666666666666666666666665554444

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.22  E-value=0.29  Score=49.22  Aligned_cols=32  Identities=22%  Similarity=0.213  Sum_probs=15.7

Q ss_pred             hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 025508          171 YNLEIQDLKDCLLLEQEEKNELNKRVQDLEKE  202 (251)
Q Consensus       171 Y~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE  202 (251)
                      +..+|.+|.+-+..-+++...+...+..++.+
T Consensus       864 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~  895 (1179)
T TIGR02168       864 LEELIEELESELEALLNERASLEEALALLRSE  895 (1179)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555554444445444444444444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.05  E-value=0.43  Score=48.02  Aligned_cols=30  Identities=20%  Similarity=0.348  Sum_probs=12.8

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 025508            9 MESLLSDFDQIYEDFKRAISEVQLLRSSCN   38 (251)
Q Consensus         9 mesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~   38 (251)
                      ++.+-..++.+...+...-.++..++....
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (1179)
T TIGR02168       241 LEELQEELKEAEEELEELTAELQELEEKLE  270 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.78  E-value=1  Score=48.15  Aligned_cols=56  Identities=13%  Similarity=0.208  Sum_probs=37.2

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHH
Q 025508           11 SLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYT   66 (251)
Q Consensus        11 sLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklyt   66 (251)
                      .|-.-...+-..+..+..++..+......=...++.+..+...++.+.+.++.-.+
T Consensus       671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  726 (1163)
T COG1196         671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA  726 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555667777777777666666666677777777777777777766665

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.57  E-value=1.4  Score=47.28  Aligned_cols=167  Identities=18%  Similarity=0.248  Sum_probs=114.2

Q ss_pred             hHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHhhHHHHHHH
Q 025508           79 KAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQD-LAAHKMHMQTLA  157 (251)
Q Consensus        79 rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~d-Laahk~hid~L~  157 (251)
                      ++.+......+.+++++..+.+.++..+++.-+......++.++.++..+..++....+.+..-..+ ...++++.+.+.
T Consensus       648 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~  727 (1201)
T PF12128_consen  648 EQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELE  727 (1201)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888899999999999999999999999999999999999999999998877766655322222 223344444333


Q ss_pred             hhh-------hhHHHhhhhhhhhhhhhhHHHHHHHHH-------HhHHHHHHHHHHHHHHHH---hhhhHHHhhhhhhhh
Q 025508          158 KKL-------DQVKFDVEMKYNLEIQDLKDCLLLEQE-------EKNELNKRVQDLEKELLM---NRTKMAEHNRDLTSV  220 (251)
Q Consensus       158 ~~L-------eqV~~eve~kY~~EIqdLkD~L~~EqE-------eKn~l~~kLq~~ekElli---~ktK~~eqqrD~tS~  220 (251)
                      .-+       .+-.......|..++.+|+.-..-|-.       .=.++..++..+++++--   .|.+..++.+++-+.
T Consensus       728 ~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~  807 (1201)
T PF12128_consen  728 AELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEE  807 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            322       223334445555666665555544433       335667777777777643   567888999999999


Q ss_pred             hh--------HHHHHHHHHhhhhhhHHHHhhhh
Q 025508          221 RS--------VETLKLKIMKLRKENEILKRKLN  245 (251)
Q Consensus       221 ~h--------VetLKqKiMKLRKENE~LKR~l~  245 (251)
                      |-        .-.|+..+..++.+-..+..++.
T Consensus       808 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~  840 (1201)
T PF12128_consen  808 WDKVDELREEKPELEEQLRDLEQELQELEQELN  840 (1201)
T ss_pred             HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            83        55666666666666666555553

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.33  E-value=2.9  Score=48.04  Aligned_cols=194  Identities=20%  Similarity=0.247  Sum_probs=135.0

Q ss_pred             hhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHH
Q 025508            7 DGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLK   86 (251)
Q Consensus         7 EemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLk   86 (251)
                      ++.+++++   ++..+-..--++|+.++...-.|++.+.+|...+..+..|...|++.|.|-....++.+...++..+--
T Consensus      1283 ee~e~~~~---~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~ 1359 (1930)
T KOG0161|consen 1283 EEAEAKLS---ALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAEL 1359 (1930)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444433   445566666789999999999999999999999999999999999999999999999888888766543


Q ss_pred             H-HHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHH---Hhhhhh
Q 025508           87 E-ELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTL---AKKLDQ  162 (251)
Q Consensus        87 E-EL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L---~~~Leq  162 (251)
                      . -..+.++...+    .-..++-.|......+.+++.++..+-.--++-|-+..+|.+++...-.-.+..   ...|+.
T Consensus      1360 ~~~~~k~e~~~~~----~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~ 1435 (1930)
T KOG0161|consen 1360 AQWKKKFEEEVLQ----RLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEK 1435 (1930)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3 33344444433    224567778888888999999999999999999999999999887765544433   333333


Q ss_pred             HHHhh---hhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 025508          163 VKFDV---EMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNR  207 (251)
Q Consensus       163 V~~ev---e~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~k  207 (251)
                      -....   =..++.-..+|-..+.-++.+-..+...++.+...+-...
T Consensus      1436 k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~ 1483 (1930)
T KOG0161|consen 1436 KQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELL 1483 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            22221   1234444444444455566666666666666665554433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=95.71  E-value=2  Score=40.98  Aligned_cols=214  Identities=24%  Similarity=0.334  Sum_probs=118.5

Q ss_pred             CCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHh
Q 025508            2 AATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAK   81 (251)
Q Consensus         2 aatsDEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk   81 (251)
                      .++|+-.++-|......+-++++.=-.|+-++|.              .|+.|..+|..||...--. ..-|.|-+    
T Consensus        15 ~~~S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~--------------~~~~L~~e~~~lr~~sv~~-~~~aEqEE----   75 (310)
T PF09755_consen   15 TSSSSATREQLRKRIESLQQENRVLKRELETEKA--------------RCKHLQEENRALREASVRI-QAKAEQEE----   75 (310)
T ss_pred             CCCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHHH----
Confidence            3445555555555555555555444444444443              4566777777776654322 22222221    


Q ss_pred             hhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHh----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-hhHHHHHH
Q 025508           82 CQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAK----ARDFEDQIRSLMLEKATNEATISNLHQDLAA-HKMHMQTL  156 (251)
Q Consensus        82 ~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~----i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaa-hk~hid~L  156 (251)
                              +-+.+.++-+=+..++.-+.|-..|+..    .+.|..+|..+..+++       .|..-|.+ +..+|..|
T Consensus        76 --------E~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~-------~lE~~Le~EqE~~V~kL  140 (310)
T PF09755_consen   76 --------EFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKV-------ELENQLEQEQEYLVNKL  140 (310)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHH
Confidence                    1122222222233333344444444433    3556666666665554       34444444 55667777


Q ss_pred             HhhhhhHHHhhhh------hhhhhhhhhHHHHHHHHHH-hHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhh--------
Q 025508          157 AKKLDQVKFDVEM------KYNLEIQDLKDCLLLEQEE-KNELNKRVQDLEKELLMNRTKMAEHNRDLTSVR--------  221 (251)
Q Consensus       157 ~~~LeqV~~eve~------kY~~EIqdLkD~L~~EqEe-Kn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~--------  221 (251)
                      ..+++.+.++...      +...|.=||--.|--|||. -|.|.+++-.+..|=.....++..---+..|++        
T Consensus       141 ~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~  220 (310)
T PF09755_consen  141 QKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEE  220 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhccc
Confidence            7777777665521      3344555666667677765 477777888888777777777664222333333        


Q ss_pred             --hHHHHHHHHHhhhhhhHHHHhhhhhccc
Q 025508          222 --SVETLKLKIMKLRKENEILKRKLNSSSQ  249 (251)
Q Consensus       222 --hVetLKqKiMKLRKENE~LKR~l~~s~~  249 (251)
                        +++.+=.-|..||.|-.-|++.|..++.
T Consensus       221 ~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~  250 (310)
T PF09755_consen  221 NDTAERLSSHIRSLRQEVSRLRQQLAASQQ  250 (310)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4566667778888888888888877654

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.50  E-value=4  Score=42.98  Aligned_cols=124  Identities=27%  Similarity=0.411  Sum_probs=81.6

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhh-------------HHH------hhhhhhhhhhhhhHHHHHHHH
Q 025508          126 RSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQ-------------VKF------DVEMKYNLEIQDLKDCLLLEQ  186 (251)
Q Consensus       126 ~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Leq-------------V~~------eve~kY~~EIqdLkD~L~~Eq  186 (251)
                      +++....--+++-|.+|+-.+...+.-+.-|...|+.             +..      +.-.+++.||.-|.+.|----
T Consensus       503 s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E  582 (775)
T PF10174_consen  503 SKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAE  582 (775)
T ss_pred             HHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333445556667766666655555555544433             222      234567899999999998888


Q ss_pred             HHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhh----------------------------------------------
Q 025508          187 EEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSV----------------------------------------------  220 (251)
Q Consensus       187 EeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~----------------------------------------------  220 (251)
                      .|||+...++..++++|--.-++...++.....+                                              
T Consensus       583 ~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~elleea~Ree~~~t~e~~l~~s~q~~~~~~~~~~~~  662 (775)
T PF10174_consen  583 NEKNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRAELLEEALREEVSITEERELAQSQQKLAQQEAQSSHL  662 (775)
T ss_pred             HHHHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhhHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhH
Confidence            9999999999999998644333333332222211                                              


Q ss_pred             -hhHHHHHHHHHhhhhhhHHHHhhhhhccc
Q 025508          221 -RSVETLKLKIMKLRKENEILKRKLNSSSQ  249 (251)
Q Consensus       221 -~hVetLKqKiMKLRKENE~LKR~l~~s~~  249 (251)
                       .||+.|-.-+-++|.|.+.|+.++++++.
T Consensus       663 e~qleeL~~~l~k~~~Eld~l~~qL~ssq~  692 (775)
T PF10174_consen  663 EKQLEELEAALEKLRQELDQLKAQLESSQQ  692 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             46667777778899999999999988764

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK02224 chromosome segregation protein; Provisional

Probab=95.42  E-value=3.5  Score=41.86  Aligned_cols=9  Identities=22%  Similarity=0.667  Sum_probs=3.8

Q ss_pred             HHHHHHHHH
Q 025508           21 EDFKRAISE   29 (251)
Q Consensus        21 e~fk~g~~E   29 (251)
                      ++|...+.+
T Consensus       165 e~~~~~~~~  173 (880)
T PRK02224        165 EEYRERASD  173 (880)
T ss_pred             HHHHHHHHH
Confidence            444444443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=95.35  E-value=5.1  Score=43.26  Aligned_cols=118  Identities=20%  Similarity=0.313  Sum_probs=77.2

Q ss_pred             HHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHH
Q 025508           45 EALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQ  124 (251)
Q Consensus        45 eALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~q  124 (251)
                      +.++...+.+..+...+..-..+.+..+..+..  .--..++....-+..+....-......++..+..+...+.+|+.+
T Consensus       681 ~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~--e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~  758 (1201)
T PF12128_consen  681 EQIEEQLNELEEELKQLKQELEELLEELKEQLK--ELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQ  758 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444443322211  111122233333444555566677788888889999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHH
Q 025508          125 IRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVK  164 (251)
Q Consensus       125 i~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~  164 (251)
                      ...-|..+-++..+|.+|+..++.....|+-...+=..|.
T Consensus       759 ~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~  798 (1201)
T PF12128_consen  759 YNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVI  798 (1201)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999999999999999999999888887776655553

>PHA02562 46 endonuclease subunit; Provisional

Probab=95.08  E-value=3.3  Score=39.53  Aligned_cols=51  Identities=18%  Similarity=0.317  Sum_probs=22.3

Q ss_pred             HHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhh-hhHhhhHHHHHHHhhhhhh
Q 025508           46 ALEITCNTLKKENERARNSYTESLENLADQLE-RKAKCQSLKEELKRVNDEH   96 (251)
Q Consensus        46 ALE~tc~~Lk~dneRLrklytEsL~~~a~qle-~rtk~qsLkEEL~r~n~e~   96 (251)
                      .++..+..++...+++++.+...+..+-.+++ ...++.+++.++.++.+++
T Consensus       192 ~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i  243 (562)
T PHA02562        192 HIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDEL  243 (562)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555565555443333332222 1223334444444444443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.90  E-value=9.7  Score=44.03  Aligned_cols=200  Identities=18%  Similarity=0.266  Sum_probs=134.5

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHh
Q 025508           12 LLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKR   91 (251)
Q Consensus        12 LL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r   91 (251)
                      +...++.....-++.=-||+.++...+..++-+-.+|.-|..|..+..-... -..+|++...+|+  +-...|..-|++
T Consensus       955 ~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~ee-k~~~l~k~~~kle--~~l~~le~~le~ 1031 (1930)
T KOG0161|consen  955 LELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEE-KAKSLNKAKAKLE--QQLDDLEVTLER 1031 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            4445555555566666666677777777777776677777666655433322 1223333333332  122344444444


Q ss_pred             hhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhh
Q 025508           92 VNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKY  171 (251)
Q Consensus        92 ~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY  171 (251)
                      -+...-.+|..-++-.-.| ..+...+.++..++..+..+++..+..+.++...+....+.+-.+-....+..       
T Consensus      1032 e~~~r~e~Ek~~rkle~el-~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~------- 1103 (1930)
T KOG0161|consen 1032 EKRIRMELEKAKRKLEGEL-KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELE------- 1103 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------
Confidence            4444444444344444444 66777788899999999999999999999999999988888777766665544       


Q ss_pred             hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhH
Q 025508          172 NLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSV  223 (251)
Q Consensus       172 ~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hV  223 (251)
                       ..|.+|.+-|-.|-...+.+.++..++..++-=.+..+.++-..+.+...+
T Consensus      1104 -~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~ 1154 (1930)
T KOG0161|consen 1104 -ARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLEL 1154 (1930)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence             358899999999999999999999999999888888888885555555443

>PRK03918 chromosome segregation protein; Provisional

Probab=94.58  E-value=5.9  Score=40.05  Aligned_cols=82  Identities=23%  Similarity=0.386  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHH------------------HhhhhhhhhhhhhhHHH
Q 025508          120 DFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVK------------------FDVEMKYNLEIQDLKDC  181 (251)
Q Consensus       120 ~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~------------------~eve~kY~~EIqdLkD~  181 (251)
                      .|.+++..+..+...-...|..|+..++..+..|+.|...++...                  .++-.+|..+|..|.+-
T Consensus       388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~~L~~~~~~el~~~~~~ei~~l~~~  467 (880)
T PRK03918        388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKE  467 (880)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCchhHHHHHHHHHHHHHHHHHH
Confidence            444555554444444445566666666666666666666655433                  23335788888888887


Q ss_pred             HHHHHHHhHHHHHHHHHHHH
Q 025508          182 LLLEQEEKNELNKRVQDLEK  201 (251)
Q Consensus       182 L~~EqEeKn~l~~kLq~~ek  201 (251)
                      +..=.++...+.+.+..+..
T Consensus       468 ~~~l~~~~~~l~~~~~~~~~  487 (880)
T PRK03918        468 LKEIEEKERKLRKELRELEK  487 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77666666666666665543

>TIGR00606 rad50 rad50

Probab=94.56  E-value=8.5  Score=41.84  Aligned_cols=54  Identities=13%  Similarity=0.150  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhh
Q 025508          118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKY  171 (251)
Q Consensus       118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY  171 (251)
                      ...|+.+|..+..+...-.+.|..+..++......++.+...++++...-+.++
T Consensus       883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  936 (1311)
T TIGR00606       883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN  936 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555555554444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=93.92  E-value=8  Score=39.10  Aligned_cols=21  Identities=19%  Similarity=0.287  Sum_probs=10.8

Q ss_pred             HHHHHHHHhhhhhhHHHHhhh
Q 025508          224 ETLKLKIMKLRKENEILKRKL  244 (251)
Q Consensus       224 etLKqKiMKLRKENE~LKR~l  244 (251)
                      +-+.+.+-.|+++...++.++
T Consensus       455 ~~~~~ei~~l~~~~~~l~~~~  475 (880)
T PRK03918        455 EEYTAELKRIEKELKEIEEKE  475 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555444

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=93.88  E-value=1.2  Score=44.62  Aligned_cols=127  Identities=20%  Similarity=0.319  Sum_probs=95.3

Q ss_pred             HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhh
Q 025508           80 AKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKK  159 (251)
Q Consensus        80 tk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~  159 (251)
                      .|.+|+...+..+..+.++-=+-..|+++-|-+.|-.||-  |+  -.+.-+.-..+-+.-|-.++=...-+|-|-|++|
T Consensus       403 eKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCL--En--ahLaqalEaerqaLRqCQrEnQELnaHNQELnnR  478 (593)
T KOG4807|consen  403 EKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCL--EN--AHLAQALEAERQALRQCQRENQELNAHNQELNNR  478 (593)
T ss_pred             HhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence            4667777777777777777777778888888888888763  32  3344444455566666666666666777888887


Q ss_pred             hhh---------------------------------HHHhhhhhh-hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 025508          160 LDQ---------------------------------VKFDVEMKY-NLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLM  205 (251)
Q Consensus       160 Leq---------------------------------V~~eve~kY-~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli  205 (251)
                      |-.                                 .+.+-+.+| +.||+-|||.|++.+-.|.=.+.|-++.=-||-|
T Consensus       479 LaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSi  558 (593)
T KOG4807|consen  479 LAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSI  558 (593)
T ss_pred             HHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Confidence            642                                 234456666 6899999999999999999999999999999999


Q ss_pred             hhhhH
Q 025508          206 NRTKM  210 (251)
Q Consensus       206 ~ktK~  210 (251)
                      -|+|-
T Consensus       559 aKaka  563 (593)
T KOG4807|consen  559 AKAKA  563 (593)
T ss_pred             HHHhh
Confidence            99874

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=93.61  E-value=0.02  Score=59.44  Aligned_cols=237  Identities=19%  Similarity=0.282  Sum_probs=0.0

Q ss_pred             hhhHHHHHhhHH-------HHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhh
Q 025508            6 DDGMESLLSDFD-------QIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLER   78 (251)
Q Consensus         6 DEemesLL~~Fd-------~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~   78 (251)
                      ++++..+..-++       ++-...|.--..|+.|.-.+.+|-.-|.=.|-.-.+|..+.+-|+.-+.|+....+.|.+.
T Consensus        17 e~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~   96 (859)
T PF01576_consen   17 EEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIEL   96 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHH
Confidence            445555555444       2334556666778889999999999999999999999999999999999999999999999


Q ss_pred             hHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHh
Q 025508           79 KAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAK  158 (251)
Q Consensus        79 rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~  158 (251)
                      +.|-.   .||.++...+-.---.|..++..|+.+|..-+.+|..+|..+...++.-|-.-..|..++....+.++.+..
T Consensus        97 ~kkrE---~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k  173 (859)
T PF01576_consen   97 NKKRE---AELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQK  173 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            88866   366666666555556788999999999999999999999999999999888888888888888877777654


Q ss_pred             hhhhHH----------Hhhhhhh---hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH---HhhhhHHHhhhhhhhhhh
Q 025508          159 KLDQVK----------FDVEMKY---NLEIQDLKDCLLLEQEEKNELNKRVQDLEKELL---MNRTKMAEHNRDLTSVRS  222 (251)
Q Consensus       159 ~LeqV~----------~eve~kY---~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekEll---i~ktK~~eqqrD~tS~~h  222 (251)
                      .--...          .++..++   ...+.||..-..==+.+..+|++.|...+..+.   -.+..+..|..|+.....
T Consensus       174 ~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~le  253 (859)
T PF01576_consen  174 AKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLE  253 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            322211          1111111   112222222222223344456666655554322   123455666666666555


Q ss_pred             HHH-----HHHHHHhhhhhhHHHHhhhh
Q 025508          223 VET-----LKLKIMKLRKENEILKRKLN  245 (251)
Q Consensus       223 Vet-----LKqKiMKLRKENE~LKR~l~  245 (251)
                      -+|     |-.++..+..+++.|+-.+.
T Consensus       254 eEtr~k~~L~~~l~~le~e~~~L~eqle  281 (859)
T PF01576_consen  254 EETRAKQALEKQLRQLEHELEQLREQLE  281 (859)
T ss_dssp             ----------------------------
T ss_pred             hHhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            544     55666667777777766654

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=92.99  E-value=6.2  Score=40.11  Aligned_cols=194  Identities=21%  Similarity=0.252  Sum_probs=118.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhH-----HhHHHHHHhHHHHHHHHHHHhhh-hHhhhHHH
Q 025508           13 LSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLK-----KENERARNSYTESLENLADQLER-KAKCQSLK   86 (251)
Q Consensus        13 L~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk-----~dneRLrklytEsL~~~a~qle~-rtk~qsLk   86 (251)
                      ..--.++.++.-+...|+|..++.+..|.++=+.++..+....     .+...+-.. .+.-..++.+... -.+.-++.
T Consensus       315 ~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~~e~~~l~~~-~e~~se~s~~~~~e~~~~t~l~  393 (518)
T PF10212_consen  315 QEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESSQESSVLSEA-SEQQSEASSQSVDEPLQPTSLS  393 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhccc-cccccccccccccccccccccc
Confidence            3344566778889999999999999999998776666443221     111111000 0000111111000 01222232


Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508           87 EELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD  166 (251)
Q Consensus        87 EEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e  166 (251)
                      .-+..-.+.. .-|.+.|  -..++.-|..+|++|=.++..+-              .-.....+-.++|..||+....+
T Consensus       394 gml~~~~~~~-~~E~esR--E~LIk~~Y~~RI~eLt~qlQ~ad--------------SKa~~f~~Ec~aL~~rL~~aE~e  456 (518)
T PF10212_consen  394 GMLTSTSEQE-SPEEESR--EQLIKSYYMSRIEELTSQLQHAD--------------SKAVHFYAECRALQKRLESAEKE  456 (518)
T ss_pred             cccccccccc-CCchhhH--HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3233322222 2244444  25578889888888877665432              22334455566777777665442


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHH
Q 025508          167 VEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILK  241 (251)
Q Consensus       167 ve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LK  241 (251)
                      -+            .+.   ++-...++++..+|.||-..|..+++|.+.+|  -|+-.|--++-+-+.+.+.||
T Consensus       457 k~------------~l~---eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MS--EHLasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  457 KE------------SLE---EELKEANQNISRLQDELETTRRNYEEQLSMMS--EHLASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HH------------HHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence            21            122   23445677899999999999999999999986  699999999999999999999

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=92.95  E-value=17  Score=40.06  Aligned_cols=156  Identities=20%  Similarity=0.266  Sum_probs=117.0

Q ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHH-------------------------HhhhhhHHHhHHHHHHHhhhhHHhHHHHH
Q 025508            8 GMESLLSDFDQIYEDFKRAISEVQLL-------------------------RSSCNAETKRREALEITCNTLKKENERAR   62 (251)
Q Consensus         8 emesLL~~Fd~i~e~fk~g~~Eiq~L-------------------------rs~~~aE~k~ReALE~tc~~Lk~dneRLr   62 (251)
                      ....|+-+|+-.|..+-|-.-+...+                         -+.+..+.+.+.+|+-+|++|++-+-+|+
T Consensus       111 hir~llk~r~~~~k~~id~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~Lr  190 (1195)
T KOG4643|consen  111 HIRLLLKDRKKKWKSVIDDLQEASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLR  190 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHH
Confidence            45678888888887776655544332                         23456678899999999999998877766


Q ss_pred             HhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHH----------------------------------HHHHHH
Q 025508           63 NSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYE----------------------------------LRKVID  108 (251)
Q Consensus        63 klytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~E----------------------------------h~raie  108 (251)
                      ---.|   +|-+=++.|...+-|+-|+.+.+-++-.--.+                                  ++--+|
T Consensus       191 qElEE---K~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRve  267 (1195)
T KOG4643|consen  191 QELEE---KFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVE  267 (1195)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHH
Confidence            55544   66677889999999999999887665332222                                  344567


Q ss_pred             HHhHHHHH---hHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508          109 SIKQDYAA---KARDFEDQIRSLMLEK--ATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD  166 (251)
Q Consensus       109 ~Lk~~~~~---~i~~LE~qi~~~~~q~--at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e  166 (251)
                      .|++++.-   .-.=|+.||..+-.+-  +|-|..|.||+++|+....|-++...++++..-+
T Consensus       268 elkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eE  330 (1195)
T KOG4643|consen  268 ELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEE  330 (1195)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            77777443   2234788999988877  9999999999999999999999999998877654

>PRK09039 hypothetical protein; Validated

Probab=92.68  E-value=3.1  Score=39.21  Aligned_cols=47  Identities=11%  Similarity=0.102  Sum_probs=27.4

Q ss_pred             HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 025508          115 AAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD  161 (251)
Q Consensus       115 ~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le  161 (251)
                      +.++..|+.||+.+=.-.+.+-..-..|...|++..+...++..+-+
T Consensus        52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~   98 (343)
T PRK09039         52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERS   98 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666665555556666666666666666666665544443

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=92.66  E-value=0.14  Score=51.67  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=25.1

Q ss_pred             hhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhhh
Q 025508          206 NRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNS  246 (251)
Q Consensus       206 ~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~~  246 (251)
                      ++||+.. .+|-....+-.--+.-+-.||+||+.|+.++..
T Consensus       545 ~~trVL~-lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~  584 (722)
T PF05557_consen  545 SKTRVLH-LRDNPTSKAEQIKKSTLEALQAENEDLLARLRS  584 (722)
T ss_dssp             TTEEEEE-ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceeee-eCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444442 334333333344467888999999999999943

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=92.52  E-value=5  Score=32.69  Aligned_cols=128  Identities=21%  Similarity=0.318  Sum_probs=96.7

Q ss_pred             HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhh-HHHhhhhhhhhhhhhhHHHHHHHHHHhHHHH
Q 025508          115 AAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQ-VKFDVEMKYNLEIQDLKDCLLLEQEEKNELN  193 (251)
Q Consensus       115 ~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Leq-V~~eve~kY~~EIqdLkD~L~~EqEeKn~l~  193 (251)
                      ..++..|+..+..+....+..++.+..++.|+..+.......-++.++ |..  |..=-..|+.||.-+.--+.+-+.+.
T Consensus         2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~--Ha~~~~~L~~lr~e~~~~~~~~~~l~   79 (132)
T PF07926_consen    2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVK--HAEDIKELQQLREELQELQQEINELK   79 (132)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999999999999998877766655555432 111  12223457788888888888888999


Q ss_pred             HHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhhh
Q 025508          194 KRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNS  246 (251)
Q Consensus       194 ~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~~  246 (251)
                      .....+...|--.+.+..++...+  ...+..++.++--|...|-.|=-+|..
T Consensus        80 ~~~~~a~~~l~~~e~sw~~qk~~l--e~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   80 AEAESAKAELEESEASWEEQKEQL--EKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999998888887777766555  356788899999999988888666643

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.38  E-value=2.3  Score=32.45  Aligned_cols=49  Identities=22%  Similarity=0.368  Sum_probs=35.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHH
Q 025508           14 SDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERAR   62 (251)
Q Consensus        14 ~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLr   62 (251)
                      .-|+++..-|..||.-|..|+-....--.+-.+|......|+.+|++|+
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~   52 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK   52 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4588888888888888888876655555555666666666777777665

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=92.33  E-value=7.6  Score=34.36  Aligned_cols=86  Identities=20%  Similarity=0.263  Sum_probs=40.9

Q ss_pred             HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhh------hhhhhhhhhhHHHHHHHHHH
Q 025508          115 AAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVE------MKYNLEIQDLKDCLLLEQEE  188 (251)
Q Consensus       115 ~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve------~kY~~EIqdLkD~L~~EqEe  188 (251)
                      +.+|..||..|..+--..-+-|+...+.-.-.......|..|..+|..+...++      .++...|.+|.+-|.-+.+.
T Consensus       140 E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~  219 (237)
T PF00261_consen  140 ESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK  219 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444443333322      24455666666666666666


Q ss_pred             hHHHHHHHHHHH
Q 025508          189 KNELNKRVQDLE  200 (251)
Q Consensus       189 Kn~l~~kLq~~e  200 (251)
                      ...+.+.|-..=
T Consensus       220 ~~~~~~eld~~l  231 (237)
T PF00261_consen  220 YKKVQEELDQTL  231 (237)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666554443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=91.27  E-value=0.06  Score=55.96  Aligned_cols=189  Identities=17%  Similarity=0.245  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhh
Q 025508           20 YEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSK   99 (251)
Q Consensus        20 ~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lsk   99 (251)
                      ...-...-.++.-++..+..|++.|.+|.....++..|++.|+..|.|--..-.   ++...+..+..||.-+...+-.-
T Consensus       235 ~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~---~l~~qlsk~~~El~~~k~K~e~e  311 (859)
T PF01576_consen  235 QREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKS---ELERQLSKLNAELEQWKKKYEEE  311 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH---HHHHHHHHHhhHHHHHHHHHHHH
Confidence            334445567788899999999999999999999999999999998875332111   11122223344444443333332


Q ss_pred             HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhH
Q 025508          100 EYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLK  179 (251)
Q Consensus       100 E~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLk  179 (251)
                      -..+-..++..|.+....+.+++.++-.+....+.-+-+..+|.+++.++...++-.......... -.-+|-..|.+++
T Consensus       312 ~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeK-Kqr~fDk~l~e~k  390 (859)
T PF01576_consen  312 AEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEK-KQRKFDKQLAEWK  390 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHH
Confidence            233344678889999999999999999999999999999999999999998888877665544443 2356777788888


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHH
Q 025508          180 DCLLLEQEEKNELNKRVQDLEKELLMNRTKMAE  212 (251)
Q Consensus       180 D~L~~EqEeKn~l~~kLq~~ekElli~ktK~~e  212 (251)
                      ..+.-.+.+.+.+.+....++-+++-.+..+.+
T Consensus       391 ~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee  423 (859)
T PF01576_consen  391 AKVEELQAERDAAQREARELETELFKLKNELEE  423 (859)
T ss_dssp             ---------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHH
Confidence            877777777777777777777776666655544

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=91.23  E-value=7.8  Score=34.06  Aligned_cols=125  Identities=25%  Similarity=0.327  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHH
Q 025508          101 YELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD  180 (251)
Q Consensus       101 ~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD  180 (251)
                      ..|.+|...+|.=|..              --..|=+.|+.|+.+++..+.-.....+.+..+        ..|...|..
T Consensus         5 ~~He~af~~iK~YYnd--------------IT~~NL~lIksLKeei~emkk~e~~~~k~m~ei--------~~eN~~L~e   62 (201)
T PF13851_consen    5 KNHEKAFQEIKNYYND--------------ITLNNLELIKSLKEEIAEMKKKEERNEKLMAEI--------SQENKRLSE   62 (201)
T ss_pred             HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhH
Confidence            4566666666655432              234556788888888888877666555555444        457889999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHH---HhhhhHHHhhhhhhh-hhhHHHHHHHHHhhhhhhHHHHhhhhhc
Q 025508          181 CLLLEQEEKNELNKRVQDLEKELL---MNRTKMAEHNRDLTS-VRSVETLKLKIMKLRKENEILKRKLNSS  247 (251)
Q Consensus       181 ~L~~EqEeKn~l~~kLq~~ekEll---i~ktK~~eqqrD~tS-~~hVetLKqKiMKLRKENE~LKR~l~~s  247 (251)
                      -|.--+++...|.++|.+.++.-.   -.|.++......+.+ -|.-+.|.|++-+|-.|-+.|.+++..+
T Consensus        63 pL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~  133 (201)
T PF13851_consen   63 PLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA  133 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887633   245555444333332 4788889999999999999999888754

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.79  E-value=37  Score=37.70  Aligned_cols=187  Identities=21%  Similarity=0.295  Sum_probs=103.2

Q ss_pred             hhhhHHhHHHHHHhHHHHH--------HHHHHHhh-hhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHH
Q 025508           51 CNTLKKENERARNSYTESL--------ENLADQLE-RKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDF  121 (251)
Q Consensus        51 c~~Lk~dneRLrklytEsL--------~~~a~qle-~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~L  121 (251)
                      .+.+..|.+||+++|..+=        .+.+.+++ -+++.-.+.+.+++-..++.+.|++-+.--.+--..+.-.+..|
T Consensus       220 ~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L  299 (1174)
T KOG0933|consen  220 YQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKAL  299 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhH
Confidence            3567788888888887542        23333332 34455556666666666666665554332222222233333466


Q ss_pred             HHHHHHHHHHhhhhHHHHHHH-------HHHHHHhhHHHHHHHhh----------------------------hhhHHH-
Q 025508          122 EDQIRSLMLEKATNEATISNL-------HQDLAAHKMHMQTLAKK----------------------------LDQVKF-  165 (251)
Q Consensus       122 E~qi~~~~~q~at~Ea~I~qL-------~~dLaahk~hid~L~~~----------------------------LeqV~~-  165 (251)
                      ++++.++.-.-...+..++..       +.++.+....|--+...                            ++.-+. 
T Consensus       300 ~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~  379 (1174)
T KOG0933|consen  300 EDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEEL  379 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            666666555444444333333       22222222222111111                            111111 


Q ss_pred             ------------hhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhh-hhhHHHHHHHHHh
Q 025508          166 ------------DVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTS-VRSVETLKLKIMK  232 (251)
Q Consensus       166 ------------eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS-~~hVetLKqKiMK  232 (251)
                                  +.+.-|...+++-|+-+..-+-+..-..-|++-+.+||.-..-+.+.-..+..+ +.+++.++--+-+
T Consensus       380 ~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~  459 (1174)
T KOG0933|consen  380 VESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEK  459 (1174)
T ss_pred             HHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence                        135667778888888888888888888899999999998887777766555443 3455555555555


Q ss_pred             hhhhh
Q 025508          233 LRKEN  237 (251)
Q Consensus       233 LRKEN  237 (251)
                      ||+..
T Consensus       460 l~~~l  464 (1174)
T KOG0933|consen  460 LKKRL  464 (1174)
T ss_pred             HHHHH
Confidence            55543

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=89.47  E-value=28  Score=35.80  Aligned_cols=90  Identities=17%  Similarity=0.283  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhh--hhhhhhhhHHHHHHHHH----HhHHHH
Q 025508          120 DFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMK--YNLEIQDLKDCLLLEQE----EKNELN  193 (251)
Q Consensus       120 ~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~k--Y~~EIqdLkD~L~~EqE----eKn~l~  193 (251)
                      .|-.+|....++..-......++..++.+.+..+..+..+|.--...+..-  =-.++...+|..|.|.-    +..+|.
T Consensus       259 eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~  338 (546)
T PF07888_consen  259 ELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLK  338 (546)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            344556666666665566666777777777777777777776555544432  12355556666666543    345566


Q ss_pred             HHHHHHHHHHHHhhhh
Q 025508          194 KRVQDLEKELLMNRTK  209 (251)
Q Consensus       194 ~kLq~~ekElli~ktK  209 (251)
                      .+|.++.-+|.-.++.
T Consensus       339 ~qLad~~l~lke~~~q  354 (546)
T PF07888_consen  339 LQLADASLELKEGRSQ  354 (546)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666666555444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=88.01  E-value=37  Score=35.47  Aligned_cols=105  Identities=26%  Similarity=0.313  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHH
Q 025508          117 KARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRV  196 (251)
Q Consensus       117 ~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kL  196 (251)
                      +..+||..|+.+..+....|..+..|..++.....+              + -.=+.|++.|--.|.+=|+..--|-+-|
T Consensus       546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~--------------~-~e~~~~~e~L~~aL~amqdk~~~LE~sL  610 (697)
T PF09726_consen  546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKY--------------E-KESEKDTEVLMSALSAMQDKNQHLENSL  610 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-hhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            445566666666666666665555555555221111              0 1114577777777776665554444433


Q ss_pred             HHHHHHHHHhhhhHHHhhhhhhh-----hhhHHHHHHHHHhhhhhhHHHHhhhhhc
Q 025508          197 QDLEKELLMNRTKMAEHNRDLTS-----VRSVETLKLKIMKLRKENEILKRKLNSS  247 (251)
Q Consensus       197 q~~ekElli~ktK~~eqqrD~tS-----~~hVetLKqKiMKLRKENE~LKR~l~~s  247 (251)
                      - +|     +|+|+     |+-|     -|++|-+...|++=-+|..+||.|++.-
T Consensus       611 s-aE-----triKl-----dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~  655 (697)
T PF09726_consen  611 S-AE-----TRIKL-----DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL  655 (697)
T ss_pred             h-HH-----HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 11     44443     4443     5888999999999999999999998753

; GO: 0016021 integral to membrane

>PRK09039 hypothetical protein; Validated

Probab=87.70  E-value=25  Score=33.20  Aligned_cols=105  Identities=18%  Similarity=0.174  Sum_probs=52.8

Q ss_pred             hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHH------HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHH
Q 025508           81 KCQSLKEELKRVNDEHLSKEYELRKVIDSIKQD------YAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQ  154 (251)
Q Consensus        81 k~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~------~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid  154 (251)
                      ....|-.+|..++.++-..+..-.+.-..+...      -+...+.|++.+......-+..-.-|..|+++|++.+.++.
T Consensus        75 ~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla  154 (343)
T PRK09039         75 GNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLA  154 (343)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            344455555555555444443333222222211      12344455555555555555555556666666666666666


Q ss_pred             HHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHH
Q 025508          155 TLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQ  186 (251)
Q Consensus       155 ~L~~~LeqV~~eve~kY~~EIqdLkD~L~~Eq  186 (251)
                      .|..-|+-..... ...+..|.+|.--|..--
T Consensus       155 ~le~~L~~ae~~~-~~~~~~i~~L~~~L~~a~  185 (343)
T PRK09039        155 ALEAALDASEKRD-RESQAKIADLGRRLNVAL  185 (343)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            6666665555544 344455555555554443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=87.65  E-value=21  Score=32.29  Aligned_cols=57  Identities=14%  Similarity=0.318  Sum_probs=32.9

Q ss_pred             HHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 025508          107 IDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQV  163 (251)
Q Consensus       107 ie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV  163 (251)
                      +..-...+......+.+++..+..+.+...+.|.+++..+.+.+..++.+...++..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~  184 (423)
T TIGR01843       128 IKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR  184 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444455555555555555556666666666666666666666666666554

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PHA02562 46 endonuclease subunit; Provisional

Probab=87.54  E-value=27  Score=33.40  Aligned_cols=75  Identities=16%  Similarity=0.241  Sum_probs=45.0

Q ss_pred             hhhHHHHHHHhhhhhhhhhHHHH---HHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHH
Q 025508           81 KCQSLKEELKRVNDEHLSKEYEL---RKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQT  155 (251)
Q Consensus        81 k~qsLkEEL~r~n~e~lskE~Eh---~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~  155 (251)
                      ++..++.++.....++...+.+.   .+.++.++......+..+++++..+..+...-++-+.+|+.+|....+.++.
T Consensus       175 ~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~  252 (562)
T PHA02562        175 KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIED  252 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            33344444444444444444333   3666777777777777777777777777777777777776666666555443

>PRK01156 chromosome segregation protein; Provisional

Probab=87.34  E-value=38  Score=34.90  Aligned_cols=79  Identities=14%  Similarity=0.113  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhh---hhHhhhHHHHHHHhhhhhhh
Q 025508           21 EDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLE---RKAKCQSLKEELKRVNDEHL   97 (251)
Q Consensus        21 e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle---~rtk~qsLkEEL~r~n~e~l   97 (251)
                      .+++..+..+..--..+..+...=+.....+..++...+.+.+++.+.-.-...--+   .-..+.+|+.+++..+.++.
T Consensus       301 ~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~~e~~~~~~~e~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~  380 (895)
T PRK01156        301 FKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIE  380 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666655555556666666666666666676666666655443322222222   22234455555555544444


Q ss_pred             hh
Q 025508           98 SK   99 (251)
Q Consensus        98 sk   99 (251)
                      ..
T Consensus       381 ~~  382 (895)
T PRK01156        381 EY  382 (895)
T ss_pred             Hh
Confidence            33

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.31  E-value=9.8  Score=33.93  Aligned_cols=80  Identities=10%  Similarity=0.162  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhh
Q 025508          140 SNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTS  219 (251)
Q Consensus       140 ~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS  219 (251)
                      ..|.++++..++-.+-+.+..++...+...++    .+..+.+.-=.+++..|+.+|+.+++++...+++....+++...
T Consensus        96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~~~----~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~  171 (206)
T PRK10884         96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQKV----AQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM  171 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555444444455555554443332    23444433224567778888888888888888888888888888


Q ss_pred             hhhH
Q 025508          220 VRSV  223 (251)
Q Consensus       220 ~~hV  223 (251)
                      .|.+
T Consensus       172 ~wf~  175 (206)
T PRK10884        172 QWFM  175 (206)
T ss_pred             HHHH
Confidence            8775

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=87.18  E-value=42  Score=35.13  Aligned_cols=160  Identities=22%  Similarity=0.268  Sum_probs=102.3

Q ss_pred             HHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHH----HHHhHH---HHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHH
Q 025508           29 EVQLLRSSCNAETKRREALEITCNTLKKENER----ARNSYT---ESLENLADQLERKAKCQSLKEELKRVNDEHLSKEY  101 (251)
Q Consensus        29 Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneR----Lrklyt---EsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~  101 (251)
                      -+++|--++..|-..|.+||...+..++..-.    ..+.-+   -+-.--++.  +|.+-+-|-.|++++..++..+|+
T Consensus       489 ~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~--~r~r~~~lE~E~~~lr~elk~kee  566 (697)
T PF09726_consen  489 SLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAES--CRQRRRQLESELKKLRRELKQKEE  566 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788888999999999887766543211    111100   000012222  344456666777777777777766


Q ss_pred             HHHHHHHHHhHHHHHhHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHH
Q 025508          102 ELRKVIDSIKQDYAAKARDFEDQIRSLMLE-KATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD  180 (251)
Q Consensus       102 Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q-~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD  180 (251)
                      .-..               ||..+..+-.. +. ++.-+.-|...|+|..+.-+.|-+.|-     .|.+.+   +||=-
T Consensus       567 ~~~~---------------~e~~~~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE~sLs-----aEtriK---ldLfs  622 (697)
T PF09726_consen  567 QIRE---------------LESELQELRKYEKE-SEKDTEVLMSALSAMQDKNQHLENSLS-----AETRIK---LDLFS  622 (697)
T ss_pred             HHHH---------------HHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHH---HHHHH
Confidence            5443               34444333332 22 455567788889998888888888874     233333   46777


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025508          181 CLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHN  214 (251)
Q Consensus       181 ~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqq  214 (251)
                      +|--..-+-..++.++..-++|+.-.|+|+++-.
T Consensus       623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~  656 (697)
T PF09726_consen  623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL  656 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777778888899999999999999988743

; GO: 0016021 integral to membrane

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=86.96  E-value=21  Score=31.59  Aligned_cols=40  Identities=25%  Similarity=0.334  Sum_probs=30.2

Q ss_pred             hHHHHHhhHHHHHHHHHHHH---------------HHHHHHHhhhhhHHHhHHHH
Q 025508            8 GMESLLSDFDQIYEDFKRAI---------------SEVQLLRSSCNAETKRREAL   47 (251)
Q Consensus         8 emesLL~~Fd~i~e~fk~g~---------------~Eiq~Lrs~~~aE~k~ReAL   47 (251)
                      -+.++-..|..|+.++.+..               --|+.|....++|+++|.-.
T Consensus         6 KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~   60 (247)
T PF06705_consen    6 KLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVES   60 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36677888888888887765               34677888888888888644

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=86.96  E-value=59  Score=36.63  Aligned_cols=145  Identities=19%  Similarity=0.253  Sum_probs=83.0

Q ss_pred             hhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHhhHHHH
Q 025508           82 CQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKAT-------NEATISNLHQDLAAHKMHMQ  154 (251)
Q Consensus        82 ~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at-------~Ea~I~qL~~dLaahk~hid  154 (251)
                      |.+++.++..+..+...+++..++.+        .++..|+++|-..-....-       ..--|.++..++.++.-.-.
T Consensus       386 ~~~~k~~~~~~e~~~vk~~E~lK~~~--------~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~  457 (1293)
T KOG0996|consen  386 FESLKKKFQDLEREDVKREEKLKRLT--------SKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLE  457 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444433333        2344455554444333332       23334455555555555555


Q ss_pred             HHHhhhhhHHHhhh---hhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHH
Q 025508          155 TLAKKLDQVKFDVE---MKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIM  231 (251)
Q Consensus       155 ~L~~~LeqV~~eve---~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiM  231 (251)
                      .+...|+.+.....   ..|..||.++.+.|+=.-...|....+++-+|-||-|..-+...-+      ..|++||-++-
T Consensus       458 ~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~------~~~e~lk~~L~  531 (1293)
T KOG0996|consen  458 KEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGL------KKVEELKGKLL  531 (1293)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence            55555555554443   3477888899999998889999999999999999887766555443      34556666655


Q ss_pred             hhhhhhHHH
Q 025508          232 KLRKENEIL  240 (251)
Q Consensus       232 KLRKENE~L  240 (251)
                      ..+..++-.
T Consensus       532 ~~~~~~~e~  540 (1293)
T KOG0996|consen  532 ASSESLKEK  540 (1293)
T ss_pred             HHHHHHHHH
Confidence            554444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=86.60  E-value=27  Score=32.40  Aligned_cols=154  Identities=19%  Similarity=0.283  Sum_probs=75.6

Q ss_pred             HHHHHHHhhhhhHHHh-------------HHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhh
Q 025508           28 SEVQLLRSSCNAETKR-------------REALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVND   94 (251)
Q Consensus        28 ~Eiq~Lrs~~~aE~k~-------------ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~   94 (251)
                      ++.+.++..|-.++|.             .+.|+.....|+.|.+.|.+ +-+-+..+...+  +.+..+|..|+.....
T Consensus       122 ~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~-~~~~l~~~~~~l--~~~~~~L~~e~~~Lk~  198 (325)
T PF08317_consen  122 NQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDK-QLEQLDELLPKL--RERKAELEEELENLKQ  198 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            4455555555555553             57788888888888888774 444555555444  3455666666665554


Q ss_pred             hhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhh
Q 025508           95 EHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLE  174 (251)
Q Consensus        95 e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~E  174 (251)
                      ..-..+..-.-.++.++           ..|...-.+.+..-..+.+|+.++.+...-|..+....        .++..+
T Consensus       199 ~~~e~~~~D~~eL~~lr-----------~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k--------~~l~~e  259 (325)
T PF08317_consen  199 LVEEIESCDQEELEALR-----------QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK--------QELLAE  259 (325)
T ss_pred             HHhhhhhcCHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence            44333333333333333           22222222222222333333333333333333332222        234445


Q ss_pred             hhhhHHHH----HHHHHHhHHHHHHHHHHHHHH
Q 025508          175 IQDLKDCL----LLEQEEKNELNKRVQDLEKEL  203 (251)
Q Consensus       175 IqdLkD~L----~~EqEeKn~l~~kLq~~ekEl  203 (251)
                      |.++...+    .....|-..|..++..+|+-.
T Consensus       260 I~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~  292 (325)
T PF08317_consen  260 IAEAEKIREECRGWTRSEVKRLKAKVDALEKLT  292 (325)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            55554333    244555666666666666543

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=86.42  E-value=42  Score=34.49  Aligned_cols=89  Identities=17%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHH--------------HHHHHhhhhhHH---Hhhhhhhhhhh
Q 025508          113 DYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMH--------------MQTLAKKLDQVK---FDVEMKYNLEI  175 (251)
Q Consensus       113 ~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~h--------------id~L~~~LeqV~---~eve~kY~~EI  175 (251)
                      .+......|-.+++.+.-+..+.+.-+.-|+.+|++..+-              ..-|..+|....   .+-.+++..|.
T Consensus       280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk  359 (546)
T PF07888_consen  280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEK  359 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556677778888777777777777777776654332              222222222221   12235666666


Q ss_pred             hhhHHHHHHHHHHhHHHHHHHHHHHH
Q 025508          176 QDLKDCLLLEQEEKNELNKRVQDLEK  201 (251)
Q Consensus       176 qdLkD~L~~EqEeKn~l~~kLq~~ek  201 (251)
                      +.|....-....+--+|+..++.+++
T Consensus       360 ~~l~~~~e~~k~~ie~L~~el~~~e~  385 (546)
T PF07888_consen  360 QALQHSAEADKDEIEKLSRELQMLEE  385 (546)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            66665544444444556666655554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=86.31  E-value=0.22  Score=50.33  Aligned_cols=114  Identities=23%  Similarity=0.389  Sum_probs=0.0

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhH
Q 025508          111 KQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKN  190 (251)
Q Consensus       111 k~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn  190 (251)
                      +.+|...+..++..|..+..+   ++. ....-.+..+.++-+|+|..+-++|.     +|..+|+-.|..|    ++-+
T Consensus       262 ~~d~~~~~e~le~ei~~L~q~---~~e-L~~~A~~a~~LrDElD~lR~~a~r~~-----klE~~ve~YKkKL----ed~~  328 (713)
T PF05622_consen  262 RDDLKIELEELEKEIDELRQE---NEE-LQAEAREARALRDELDELREKADRAD-----KLENEVEKYKKKL----EDLE  328 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHHHHHHH-----HHHHHHHHHHHHH----HHHH
Confidence            344444555555544433222   111 11223456677888888877666654     4455555555444    2345


Q ss_pred             HHHHHHHHHHHHH---HHhhhhHHHhhhhhhhhh-hHHHHHHHHHhhhhhh
Q 025508          191 ELNKRVQDLEKEL---LMNRTKMAEHNRDLTSVR-SVETLKLKIMKLRKEN  237 (251)
Q Consensus       191 ~l~~kLq~~ekEl---li~ktK~~eqqrD~tS~~-hVetLKqKiMKLRKEN  237 (251)
                      ++.++++.|+..-   +=.++.++++.+...+.+ +++++|+.|..|..+.
T Consensus       329 ~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l  379 (713)
T PF05622_consen  329 DLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKL  379 (713)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666665532   234566666666544332 5556555555554433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.17  E-value=5.3  Score=34.29  Aligned_cols=80  Identities=25%  Similarity=0.345  Sum_probs=34.5

Q ss_pred             HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHH
Q 025508          115 AAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNK  194 (251)
Q Consensus       115 ~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~  194 (251)
                      ..++..+..++..+-.....+...|..|..+++.++.-+..|...+..-        ..-|+.|+|.+.+=+-+-|-+..
T Consensus        94 ~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek--------~k~~e~l~DE~~~L~l~~~~~e~  165 (194)
T PF08614_consen   94 AQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEK--------NKANEILQDELQALQLQLNMLEE  165 (194)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444443333333322        22456777777777777788888


Q ss_pred             HHHHHHHH
Q 025508          195 RVQDLEKE  202 (251)
Q Consensus       195 kLq~~ekE  202 (251)
                      ++..+++|
T Consensus       166 k~~~l~~E  173 (194)
T PF08614_consen  166 KLRKLEEE  173 (194)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877765

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=86.03  E-value=38  Score=33.62  Aligned_cols=71  Identities=25%  Similarity=0.331  Sum_probs=44.1

Q ss_pred             hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHH-hhhhhhhhhhHHHHHHHHHhhhhhhHHHH
Q 025508          171 YNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAE-HNRDLTSVRSVETLKLKIMKLRKENEILK  241 (251)
Q Consensus       171 Y~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~e-qqrD~tS~~hVetLKqKiMKLRKENE~LK  241 (251)
                      ...|+.+.|..|..-.++-+.|......+..||--.|.-++. +++...+.-.|..|.-++-++|.+.+..+
T Consensus       286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~  357 (522)
T PF05701_consen  286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK  357 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence            345666666666666667777777777777776655555554 33444455556667766666666665544

Several sequences in this family are described as being myosin heavy chain-like.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=85.90  E-value=52  Score=35.02  Aligned_cols=184  Identities=22%  Similarity=0.320  Sum_probs=103.2

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHh----HHHHHHhHHHH------------HH-H
Q 025508            9 MESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKE----NERARNSYTES------------LE-N   71 (251)
Q Consensus         9 mesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~d----neRLrklytEs------------L~-~   71 (251)
                      ++-...+|.+++.++-....|+.-||...       +.++..+.+++++    .+.+.+|.+.-            -+ -
T Consensus       109 ld~~~~q~~rl~~E~er~~~El~~lr~~l-------E~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~  181 (775)
T PF10174_consen  109 LDKAQEQFERLQAERERLQRELERLRKTL-------EELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEA  181 (775)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHH
Confidence            66678899999999999999999999533       3344444444433    34555555411            01 1


Q ss_pred             HHHHhhhhHhhhHHHHHHHhhhhhhhhh-HHHHH-----------HHHHHHhHHHHHhHHH-------HHHHHHHHHHHh
Q 025508           72 LADQLERKAKCQSLKEELKRVNDEHLSK-EYELR-----------KVIDSIKQDYAAKARD-------FEDQIRSLMLEK  132 (251)
Q Consensus        72 ~a~qle~rtk~qsLkEEL~r~n~e~lsk-E~Eh~-----------raie~Lk~~~~~~i~~-------LE~qi~~~~~q~  132 (251)
                      +...-++.+.|..|..-|.....+.... +.=|+           .++..+=..=+++|..       ||+.|..+-...
T Consensus       182 ~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~  261 (775)
T PF10174_consen  182 LRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRG  261 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1122234444444444444333333111 11111           1333333333444444       466666666666


Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh--------------------hhhhhhhhhhhhHHHHHHHHHHhHHH
Q 025508          133 ATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD--------------------VEMKYNLEIQDLKDCLLLEQEEKNEL  192 (251)
Q Consensus       133 at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e--------------------ve~kY~~EIqdLkD~L~~EqEeKn~l  192 (251)
                      ++.++-.+.+-..+.+|++|...+-+++|++.-+                    ++.-|+.-|.-||+.|--=+.+++-|
T Consensus       262 ~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~L  341 (775)
T PF10174_consen  262 ELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEML  341 (775)
T ss_pred             cccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666777777778888998888888777776544                    33445556666666555555555554


Q ss_pred             HHHHHHH
Q 025508          193 NKRVQDL  199 (251)
Q Consensus       193 ~~kLq~~  199 (251)
                      +.-+..+
T Consensus       342 qsdve~L  348 (775)
T PF10174_consen  342 QSDVEAL  348 (775)
T ss_pred             HHhHHHH
Confidence            4444433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=85.89  E-value=56  Score=35.33  Aligned_cols=127  Identities=25%  Similarity=0.313  Sum_probs=77.5

Q ss_pred             HHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHH
Q 025508          108 DSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQE  187 (251)
Q Consensus       108 e~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqE  187 (251)
                      ++|-.+....|-.|+...-.+---++.+|+|=.+++--+--|-+       -+.++. +.-+.-+..|.+|-.-+..+|.
T Consensus       487 etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~a-------e~~rq~-~~~~~sr~~~~~le~~~~a~qa  558 (961)
T KOG4673|consen  487 ETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQA-------ELTRQK-DYYSNSRALAAALEAQALAEQA  558 (961)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHH-HhhhhHHHHHHHHHHHHHHHHH
Confidence            34444444445555544444444455566665555443333222       122221 1112223467777778888888


Q ss_pred             HhHHHHHHHHHHHHHHHHhhhhHH-HhhhhhhhhhhHHHHHHHHHh-----------hhhhhHHHHhhhhhcc
Q 025508          188 EKNELNKRVQDLEKELLMNRTKMA-EHNRDLTSVRSVETLKLKIMK-----------LRKENEILKRKLNSSS  248 (251)
Q Consensus       188 eKn~l~~kLq~~ekElli~ktK~~-eqqrD~tS~~hVetLKqKiMK-----------LRKENE~LKR~l~~s~  248 (251)
                      ..+++.+   +++|+   +|.|+. .-+|..+=+++|+-|++++-+           +|-||+.|-||+..++
T Consensus       559 t~d~a~~---Dlqk~---nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE  625 (961)
T KOG4673|consen  559 TNDEARS---DLQKE---NRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAE  625 (961)
T ss_pred             hhhhhhh---hHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777   44444   566643 346777889999999999875           8999999999997654

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=85.62  E-value=28  Score=31.57  Aligned_cols=19  Identities=21%  Similarity=0.216  Sum_probs=7.8

Q ss_pred             hhHhhhHHHHHHHhhhhhh
Q 025508           78 RKAKCQSLKEELKRVNDEH   96 (251)
Q Consensus        78 ~rtk~qsLkEEL~r~n~e~   96 (251)
                      .+..+..+..++..+..++
T Consensus       201 ~~~~~~~~~~~l~~~~~~l  219 (423)
T TIGR01843       201 LERERAEAQGELGRLEAEL  219 (423)
T ss_pred             HHHHHHHHHhHHHHHHHHH
Confidence            3344444444444443333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=85.55  E-value=36  Score=32.82  Aligned_cols=151  Identities=22%  Similarity=0.312  Sum_probs=103.7

Q ss_pred             hhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhh-
Q 025508           82 CQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKL-  160 (251)
Q Consensus        82 ~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~L-  160 (251)
                      .--|+-|+..+..+..-+|..|-..|+.+|++++    +|+.-|.--   --+=--||.|-.+.|.+.++-=-||+++| 
T Consensus         8 ia~LrlEidtik~q~qekE~ky~ediei~Kekn~----~Lqk~lKLn---eE~ltkTi~qy~~QLn~L~aENt~L~SkLe   80 (305)
T PF14915_consen    8 IAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKND----DLQKSLKLN---EETLTKTIFQYNGQLNVLKAENTMLNSKLE   80 (305)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHhhh---HHHHHHHHHHHhhhHHHHHHHHHHHhHHHH
Confidence            4467889999999999999999999999998765    444433310   01112389999999999999999999999 


Q ss_pred             ------hhHHHhhhhhhhhh----hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhh-hHHHHHHH
Q 025508          161 ------DQVKFDVEMKYNLE----IQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVR-SVETLKLK  229 (251)
Q Consensus       161 ------eqV~~eve~kY~~E----IqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~-hVetLKqK  229 (251)
                            +++.++|++ |++-    |+|.--|    |-.|.|+..-+|....|-+-.+-|+--   |+++.+ ..+.|-|+
T Consensus        81 ~EKq~kerLEtEiES-~rsRLaaAi~d~dqs----q~skrdlelafqr~rdEw~~lqdkmn~---d~S~lkd~ne~LsQq  152 (305)
T PF14915_consen   81 KEKQNKERLETEIES-YRSRLAAAIQDHDQS----QTSKRDLELAFQRARDEWVRLQDKMNS---DVSNLKDNNEILSQQ  152 (305)
T ss_pred             HhHHHHHHHHHHHHH-HHHHHHHHHhhHHHH----HhhHHHHHHHHHHHhhHHHHHHHHhcc---hHHhHHHHhHHHHHH
Confidence                  567777776 4333    3333322    456788888888888876655554422   222222 24667777


Q ss_pred             HHhhhhhhHHHHhhhhhc
Q 025508          230 IMKLRKENEILKRKLNSS  247 (251)
Q Consensus       230 iMKLRKENE~LKR~l~~s  247 (251)
                      +.+-.-.-.+|+-.|++.
T Consensus       153 LskaesK~nsLe~elh~t  170 (305)
T PF14915_consen  153 LSKAESKFNSLEIELHHT  170 (305)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777776666676666543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.52  E-value=51  Score=34.54  Aligned_cols=23  Identities=13%  Similarity=0.274  Sum_probs=18.4

Q ss_pred             CCCCChhhHHHHHhhHHHHHHHH
Q 025508            1 MAATSDDGMESLLSDFDQIYEDF   23 (251)
Q Consensus         1 MaatsDEemesLL~~Fd~i~e~f   23 (251)
                      ++++++|-.+-|...+..|+++|
T Consensus       530 ~~p~~~E~l~lL~~a~~vlreeY  552 (717)
T PF10168_consen  530 SSPSPQECLELLSQATKVLREEY  552 (717)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHH
Confidence            46778888888888888888876

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=85.30  E-value=49  Score=34.17  Aligned_cols=137  Identities=18%  Similarity=0.307  Sum_probs=83.8

Q ss_pred             hhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 025508           82 CQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD  161 (251)
Q Consensus        82 ~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le  161 (251)
                      ...|..|++.+..++-..-.+ ...+..|...-+.++.+||..++.+-.+.+--.....++..|-++-- +.=.=|..|.
T Consensus        89 ~~~L~kElE~L~~qlqaqv~~-ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~S-RAlsQN~eLK  166 (617)
T PF15070_consen   89 AEHLRKELESLEEQLQAQVEN-NEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATAS-RALSQNRELK  166 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH-HHHHhHHHHH
Confidence            344555665555554443222 23566677777888888888888776665544444444544433211 1101111222


Q ss_pred             hHHHhhhh---hhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhh
Q 025508          162 QVKFDVEM---KYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSV  220 (251)
Q Consensus       162 qV~~eve~---kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~  220 (251)
                      +--.+.+.   +-.++==+|.+.|+.|+--+..|..+|-.++..+--.+.+++.+-+++.|.
T Consensus       167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~L  228 (617)
T PF15070_consen  167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSL  228 (617)
T ss_pred             HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            22223322   335666678999999999999999999999988888888877775555553

>PRK10869 recombination and repair protein; Provisional

Probab=85.18  E-value=44  Score=33.49  Aligned_cols=203  Identities=14%  Similarity=0.247  Sum_probs=112.7

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhH------HHHHHhHHHHHHHHHHHhhhhHhhh
Q 025508           10 ESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKEN------ERARNSYTESLENLADQLERKAKCQ   83 (251)
Q Consensus        10 esLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dn------eRLrklytEsL~~~a~qle~rtk~q   83 (251)
                      ..++..|...|..|+.+..++..++.+...=..+++-|++-+..|..=|      +.|..-|.    .+.+--+-...++
T Consensus       153 ~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~----~L~n~e~i~~~~~  228 (553)
T PRK10869        153 TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYK----RLANSGQLLTTSQ  228 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH----HHHHHHHHHHHHH
Confidence            4688999999999999999999999887666677788888777665422      22222211    1111111111222


Q ss_pred             HHHHHHH-----hhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHh
Q 025508           84 SLKEELK-----RVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAK  158 (251)
Q Consensus        84 sLkEEL~-----r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~  158 (251)
                      +.-+-|.     .+.+.+    ..-.++++.+ .+|.....++-..+..+..+.-.--..+...-.++...-..++.+..
T Consensus       229 ~~~~~L~~~~~~~~~~~l----~~~~~~l~~~-~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~  303 (553)
T PRK10869        229 NALQLLADGEEVNILSQL----YSAKQLLSEL-IGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQ  303 (553)
T ss_pred             HHHHHhcCCCcccHHHHH----HHHHHHHHHH-hhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence            2222221     011111    1222444444 34455555666666665555433333333333445555566777788


Q ss_pred             hhhhHHHhhhhhhhhhhhhhHHH---HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhh
Q 025508          159 KLDQVKFDVEMKYNLEIQDLKDC---LLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRS  222 (251)
Q Consensus       159 ~LeqV~~eve~kY~~EIqdLkD~---L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~h  222 (251)
                      ||..+. ...-||...|.|+-+.   +.-|.+.=+.....++.+++++--.+.++.+.-..++..|.
T Consensus       304 Rl~~l~-~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~  369 (553)
T PRK10869        304 RLSKQI-SLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQ  369 (553)
T ss_pred             HHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887765 4677899777766544   34444444444556666776666555555555555555544

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=85.04  E-value=25  Score=30.51  Aligned_cols=90  Identities=16%  Similarity=0.246  Sum_probs=49.0

Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHH
Q 025508          133 ATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAE  212 (251)
Q Consensus       133 at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~e  212 (251)
                      +.=...|.+++..+.+-+..++.+...|........ .+..-.+.....+.--+.+-.....++..++..+..-|..+..
T Consensus        73 ~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~  151 (302)
T PF10186_consen   73 ERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-ASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQ  151 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555555555555555555555555555555 3333333333333333445555666666677777777777776


Q ss_pred             hhhhhhhhhhH
Q 025508          213 HNRDLTSVRSV  223 (251)
Q Consensus       213 qqrD~tS~~hV  223 (251)
                      +....-..+.|
T Consensus       152 ~l~~ifpI~~~  162 (302)
T PF10186_consen  152 ELSEIFPIEQV  162 (302)
T ss_pred             HHHHHhCceee
Confidence            66555544443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=84.83  E-value=51  Score=33.96  Aligned_cols=104  Identities=20%  Similarity=0.304  Sum_probs=71.2

Q ss_pred             hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhh
Q 025508           81 KCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKL  160 (251)
Q Consensus        81 k~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~L  160 (251)
                      ++--||+|++.+...+..++.+-..+=+.+. .+.-.++.+|+.+..+..-.+.=|.-+..|+.+.+-...++..+.+.|
T Consensus       114 ei~kl~~e~~elr~~~~~~~k~~~~~re~~~-~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l  192 (546)
T KOG0977|consen  114 EITKLREELKELRKKLEKAEKERRGAREKLD-DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL  192 (546)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3445777777777777777666555544443 355667778888887777777777777777777777777777777777


Q ss_pred             hhHHHhhhhhhhhhhhhhHHHHHHHH
Q 025508          161 DQVKFDVEMKYNLEIQDLKDCLLLEQ  186 (251)
Q Consensus       161 eqV~~eve~kY~~EIqdLkD~L~~Eq  186 (251)
                      |+=+. .-..|++.+|+|.-.|..=+
T Consensus       193 d~Etl-lr~d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  193 DDETL-LRVDLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHHH-HHHHHHhHHHHHHHHHHHHH
Confidence            66432 34567788888877665543

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=84.80  E-value=34  Score=31.98  Aligned_cols=145  Identities=19%  Similarity=0.218  Sum_probs=81.7

Q ss_pred             HHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 025508           47 LEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIR  126 (251)
Q Consensus        47 LE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~  126 (251)
                      |..+|..|.+-|..|.+.---+=...|.      +...|-.--...-.=.-..+.-+.+.++.++.+-..--...+.+++
T Consensus        11 l~~h~~~L~~~N~~L~~~IqdtE~st~~------~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~   84 (258)
T PF15397_consen   11 LKKHEDFLTKLNKELIKEIQDTEDSTAL------KVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLS   84 (258)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhHHhhHHH------HHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHH
Confidence            4578889999999998864333222222      2222222222222333334444445555555555555566666667


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHhhHHHHH-----------HHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHH
Q 025508          127 SLMLEKATNEATISNLHQDLAAHKMHMQT-----------LAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKR  195 (251)
Q Consensus       127 ~~~~q~at~Ea~I~qL~~dLaahk~hid~-----------L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~k  195 (251)
                      ++.-|.-.=+|-|...+.+|....+|+|.           |...|+++...    -+.|+.+|.-.+.+   +...|+++
T Consensus        85 ~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~----qqdEldel~e~~~~---el~~l~~~  157 (258)
T PF15397_consen   85 KLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDS----QQDELDELNEMRQM---ELASLSRK  157 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHH
Confidence            76666666788888888888888888773           33333333332    33444444444332   34556667


Q ss_pred             HHHHHHHHH
Q 025508          196 VQDLEKELL  204 (251)
Q Consensus       196 Lq~~ekEll  204 (251)
                      .+.-..+++
T Consensus       158 ~q~k~~~il  166 (258)
T PF15397_consen  158 IQEKKEEIL  166 (258)
T ss_pred             HHHHHHHHH
Confidence            776666644

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=84.63  E-value=88  Score=36.57  Aligned_cols=176  Identities=21%  Similarity=0.248  Sum_probs=125.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhh
Q 025508           14 SDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVN   93 (251)
Q Consensus        14 ~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n   93 (251)
                      ..|+-...+++-+=+|+..||+-+..=+..|.-|...|..+++.+.+|++--.|....-          .+|.+.+.+..
T Consensus        66 q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qk----------r~l~~~le~~~  135 (1822)
T KOG4674|consen   66 QRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQK----------RQLMELLERQK  135 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence            34444445566666666777777776667788889999999999999999888876332          34566666777


Q ss_pred             hhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhh
Q 025508           94 DEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNL  173 (251)
Q Consensus        94 ~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~  173 (251)
                      .++-.+..+-.+=-+.|+..+. .+.++++++-.+....++...--..|-|+..+..+|..-|..-|--|...... |.-
T Consensus       136 ~ele~l~~~n~~l~~ql~ss~~-~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~-~~r  213 (1822)
T KOG4674|consen  136 AELEALESENKDLNDQLKSSTK-TLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLS-LRR  213 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHh
Confidence            7777777776666666666554 45689999999999999999999999999999999999999988877765543 222


Q ss_pred             ----hhhhhHHHHH-------HHHHHhHHHHHHHHHHHH
Q 025508          174 ----EIQDLKDCLL-------LEQEEKNELNKRVQDLEK  201 (251)
Q Consensus       174 ----EIqdLkD~L~-------~EqEeKn~l~~kLq~~ek  201 (251)
                          +|.+|+-||.       ..++-.+.+..+...+++
T Consensus       214 e~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~  252 (1822)
T KOG4674|consen  214 EHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSK  252 (1822)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3666666654       444444444444444444

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=83.76  E-value=24  Score=29.30  Aligned_cols=76  Identities=16%  Similarity=0.261  Sum_probs=50.7

Q ss_pred             HHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHH
Q 025508           47 LEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFED  123 (251)
Q Consensus        47 LE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~  123 (251)
                      +|+-++.|+.++.||-+--.+.=.-++.-+..-....+...++..+..++..++..|...++.+-++.+ .+.+|.+
T Consensus        28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E-~veEL~~  103 (120)
T PF12325_consen   28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSE-EVEELRA  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHH
Confidence            356677777777777666555555555555555566777777777788888888888888888777654 2344433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=83.17  E-value=51  Score=32.71  Aligned_cols=139  Identities=22%  Similarity=0.275  Sum_probs=103.0

Q ss_pred             HHHHhhhhHHhHHHHHHhHHHHHHHH---HHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHH
Q 025508           47 LEITCNTLKKENERARNSYTESLENL---ADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFED  123 (251)
Q Consensus        47 LE~tc~~Lk~dneRLrklytEsL~~~---a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~  123 (251)
                      |+-.+..+-..+|-||+. .||+..-   ++||  ++--|.|+.+|-.+.+ +..+=..|..-+|-+=+.+...-..|+-
T Consensus        73 lq~kirk~~e~~eglr~i-~es~~e~q~e~~qL--~~qnqkL~nqL~~~~~-vf~k~k~~~q~LE~li~~~~EEn~~lql  148 (401)
T PF06785_consen   73 LQTKIRKITEKDEGLRKI-RESVEERQQESEQL--QSQNQKLKNQLFHVRE-VFMKTKGDIQHLEGLIRHLREENQCLQL  148 (401)
T ss_pred             HHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHH--HHhHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            444445555556666654 3444332   2333  5667899999999999 8888899999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 025508          124 QIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLE  200 (251)
Q Consensus       124 qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~e  200 (251)
                      |+-.+..+-.-+|--...|..+|+.--+.+++|+.           .|+--+..=+..|-.=|..--.|..|.|++=
T Consensus       149 qL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~-----------eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm  214 (401)
T PF06785_consen  149 QLDALQQECGEKEEESQTLNRELAEALAYQQELND-----------EYQATFVEQHSMLDKRQAYIGKLESKVQDLM  214 (401)
T ss_pred             hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH-----------HhhcccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999988998999999999999999999875           3444444555555555666666666666643

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.14  E-value=36  Score=30.97  Aligned_cols=69  Identities=22%  Similarity=0.312  Sum_probs=48.3

Q ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhh
Q 025508           87 EELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKK  159 (251)
Q Consensus        87 EEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~  159 (251)
                      +|+.+-.+.++.=-..|-.+|-+..++    |+.||+-|+.+-.+.-.-...|.++..++.-.|.+|+.+..-
T Consensus        35 ~e~~kE~~~L~~Er~~h~eeLrqI~~D----In~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   35 EEYRKEMEELLQERMAHVEELRQINQD----INTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334433344443333444444444443    667999999999999888999999999999999999988654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK11637 AmiB activator; Provisional

Probab=82.32  E-value=47  Score=31.64  Aligned_cols=19  Identities=16%  Similarity=0.195  Sum_probs=9.8

Q ss_pred             HHHHHHHHHhhhhhhHHHH
Q 025508          223 VETLKLKIMKLRKENEILK  241 (251)
Q Consensus       223 VetLKqKiMKLRKENE~LK  241 (251)
                      +..|++..-+|.+....++
T Consensus       235 l~~l~~~~~~L~~~I~~l~  253 (428)
T PRK11637        235 LSELRANESRLRDSIARAE  253 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555444

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.07  E-value=36  Score=30.14  Aligned_cols=197  Identities=20%  Similarity=0.272  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHH-------HHHHhHHHHHHH------HHHHhhhhHhhhH
Q 025508           18 QIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENE-------RARNSYTESLEN------LADQLERKAKCQS   84 (251)
Q Consensus        18 ~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dne-------RLrklytEsL~~------~a~qle~rtk~qs   84 (251)
                      .|-.+.-.+-..+..+...+....++++.+|.-+.+|.+-.-       +.---+.....+      -++..+  ..+.+
T Consensus         5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~e--r~~k~   82 (237)
T PF00261_consen    5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESE--RARKV   82 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHC--HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            334444455555666666677777777777777666655433       222222222222      222222  22344


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHHHhH------HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHh
Q 025508           85 LKEELKRVNDEHLSKEYELRKVIDSIKQ------DYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAK  158 (251)
Q Consensus        85 LkEEL~r~n~e~lskE~Eh~raie~Lk~------~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~  158 (251)
                      |-.-.....+.+...|...+.+...+..      .-..++.-+|..+..+..-..+-|+.|..|..+|......+..|--
T Consensus        83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~  162 (237)
T PF00261_consen   83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA  162 (237)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence            5555555566666666666655544433      2245566777777777777788888888888888888888877776


Q ss_pred             hhhhHHHhhhhhhhhhhhhhHHHHHH-----HHH--HhHHHHHHHHHHHHHHHHhhhhHHHhhhhh
Q 025508          159 KLDQVKFDVEMKYNLEIQDLKDCLLL-----EQE--EKNELNKRVQDLEKELLMNRTKMAEHNRDL  217 (251)
Q Consensus       159 ~LeqV~~eve~kY~~EIqdLkD~L~~-----EqE--eKn~l~~kLq~~ekElli~ktK~~eqqrD~  217 (251)
                      .-++.... +-.|...|.+|.+-|.-     +-.  .-+.|.+.+..++.+|--.|.+...=+.++
T Consensus       163 ~~~~~~~r-e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el  227 (237)
T PF00261_consen  163 SEEKASER-EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL  227 (237)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66655444 36788999999887742     222  235677888888888887777777666655

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=80.80  E-value=78  Score=33.22  Aligned_cols=16  Identities=38%  Similarity=0.422  Sum_probs=7.1

Q ss_pred             HHHHHHhhhhhhHHHH
Q 025508          226 LKLKIMKLRKENEILK  241 (251)
Q Consensus       226 LKqKiMKLRKENE~LK  241 (251)
                      .+..+-.++++.+.+.
T Consensus       724 ~~~~~~~~~~~~~~~~  739 (908)
T COG0419         724 RKAELEELKKELEKLE  739 (908)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444444

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=80.60  E-value=35  Score=29.05  Aligned_cols=13  Identities=31%  Similarity=0.524  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHhhH
Q 025508          139 ISNLHQDLAAHKM  151 (251)
Q Consensus       139 I~qL~~dLaahk~  151 (251)
                      |..|+.+++..|.
T Consensus       140 i~~lr~~iE~~K~  152 (177)
T PF07798_consen  140 IANLRTEIESLKW  152 (177)
T ss_pred             HHHHHHHHHHHHH
Confidence            4445555554443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.52  E-value=15  Score=31.46  Aligned_cols=104  Identities=24%  Similarity=0.283  Sum_probs=48.6

Q ss_pred             HHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHH
Q 025508           45 EALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQ  124 (251)
Q Consensus        45 eALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~q  124 (251)
                      .+++..+..|..|...+.|.-.+                 +-..|..++.++-..+.+....-. --......+..|+.+
T Consensus        70 ~~le~~~~~l~~ELael~r~~~e-----------------l~~~L~~~~~~l~~l~~~~~~~~~-~l~~l~~~~~~L~~~  131 (194)
T PF08614_consen   70 SSLEQKLAKLQEELAELYRSKGE-----------------LAQQLVELNDELQELEKELSEKER-RLAELEAELAQLEEK  131 (194)
T ss_dssp             -------------------------------------------------------------HHH-HHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccc-----------------ccccccccccccchhhhhHHHHHH-HHHHHHHHHHHHHHH
Confidence            34566677777777666665544                 333344444444444433322211 123456677888999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508          125 IRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD  166 (251)
Q Consensus       125 i~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e  166 (251)
                      |+.+-.+......+|..|+-++.++..+.-++..++..+..|
T Consensus       132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E  173 (194)
T PF08614_consen  132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE  173 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887665

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 24/240 (10%)

Query: 21   EDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKA 80
            +   +   E  LL+    AET+     E     L  + +       E    + ++ ER  
Sbjct: 885  QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944

Query: 81   KCQSLKEELKRVNDE----------HLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLML 130
            + Q+ K+++++   +             K    +   D   +         EDQ   L  
Sbjct: 945  QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004

Query: 131  EKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKN 190
            E+   E  +S+L  +LA  +   + L K  +        K+   I +L+  L  E++ + 
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKN--------KHESMISELEVRLKKEEKSRQ 1056

Query: 191  ELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNSSSQE 250
            EL K  + LE E      ++AE          +  LK ++ K  +E +    +L   + +
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQ------IAELKAQLAKKEEELQAALARLEDETSQ 1110

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 33/221 (14%), Positives = 81/221 (36%), Gaps = 10/221 (4%)

Query: 33   LRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRV 92
            ++       ++ E  E     L+ E   A     +  +++    ++  K    ++ L+  
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012

Query: 93   NDE---HLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAH 149
              +   +L++E E  K +  +K  + +   + E +++     +   E     L  + +  
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072

Query: 150  KMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTK 209
               +  L  ++ ++K  +  K   E+Q     L  E  +KN   K++++LE  +   +  
Sbjct: 1073 HEQIAELQAQIAELKAQLA-KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131

Query: 210  MAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNSSSQE 250
            +                  +   L +E E LK +L  +   
Sbjct: 1132 LESEKAARNKAEK------QKRDLSEELEALKTELEDTLDT 1166

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 8e-08
 Identities = 45/202 (22%), Positives = 96/202 (47%), Gaps = 8/202 (3%)

Query: 9    MESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRRE----ALEITCNTLKKENERARNS 64
            M+  + D ++  E+ + A  ++QL + + + + K+ E     +E   N L KE +     
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012

Query: 65   YTESLENLADQLERKAKCQSLKEELKRVNDE---HLSKEYELRKVIDSIKQDYAAKARDF 121
             ++   NLA++ E+      LK + + +  E    L KE + R+ ++ IK+    ++ D 
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072

Query: 122  EDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDC 181
             +QI  L  + A  +A ++   ++L A    ++    + +     +  +    I DL++ 
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR-ELESHISDLQED 1131

Query: 182  LLLEQEEKNELNKRVQDLEKEL 203
            L  E+  +N+  K+ +DL +EL
Sbjct: 1132 LESEKAARNKAEKQKRDLSEEL 1153

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 41/227 (18%), Positives = 88/227 (38%), Gaps = 13/227 (5%)

Query: 25   RAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQS 84
            R   E+Q          +R++  E       KE E+      E    L ++L+ + +  +
Sbjct: 854  RQEEEMQAKDEELQRTKERQQKAE----AELKELEQKHTQLCEEKNLLQEKLQAETELYA 909

Query: 85   LKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQ 144
              EE++       +K+ EL +++     +  A+  + E++ + L  EK   +  + +L +
Sbjct: 910  EAEEMR---VRLAAKKQELEEIL----HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962

Query: 145  DLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELL 204
             L   +   Q L  +       ++ K   +I  ++D      +E+  L +RV DL   L 
Sbjct: 963  QLEEEEAARQKLQLEKVTADGKIK-KMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021

Query: 205  MNRTKMAEHNRDLTSV-RSVETLKLKIMKLRKENEILKRKLNSSSQE 250
                K     +        +  L++++ K  K  + L++       E
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 3e-09
 Identities = 42/271 (15%), Positives = 84/271 (30%), Gaps = 72/271 (26%)

Query: 7   DGMESLLSDFDQIYEDFKRAISEVQL------LRSSCNAETKRREALEITCNTL------ 54
           D   ++      I  + +R +           L +  NA+     A  ++C  L      
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKILLTTRFK 275

Query: 55  ------------KKENERARNSYT--ESLENLADQLERKAKCQSLKEELKRVNDEHLSKE 100
                           +    + T  E    L   L+   + Q L  E+   N   LS  
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRRLS-- 331

Query: 101 YELRKVIDSIKQDYAAKARDFE---DQIRSLMLEKATN--EATISNLHQDLAAHKMHMQT 155
                +I       A   RD     D  + +  +K T   E++++ L           + 
Sbjct: 332 -----II-------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE------YRK 373

Query: 156 LAKKLDQVKF--DVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEH 213
           +  +L    F        ++    L   L+     K+++   V  L K  L+ +      
Sbjct: 374 MFDRL--SVFPPSA----HIPTILL--SLIWFDVIKSDVMVVVNKLHKYSLVEK-----Q 420

Query: 214 NRDLTSVRSVETLKLKIMKLRKENEILKRKL 244
            ++ T   S+ ++ L++    +    L R +
Sbjct: 421 PKESTI--SIPSIYLELKVKLENEYALHRSI 449

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 42/233 (18%), Positives = 85/233 (36%), Gaps = 17/233 (7%)

Query: 20   YEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLAD--QLE 77
            Y+  + A   +Q L        K +  L    + + +++ R   +       L     L+
Sbjct: 835  YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894

Query: 78   RKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEA 137
               +    K ELK++  E  S E   +K+               E++I  L  +      
Sbjct: 895  CCYRRMMAKRELKKLKIEARSVE-RYKKLHI-----------GLENKIMQLQRKIDEQNK 942

Query: 138  TISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQ 197
               +L + +   ++   T  +KL      + M    E ++  + +L  QEE  +L K + 
Sbjct: 943  EYKSLLEKMNNLEITYSTETEKLRSDVERLRMS-EEEAKNATNRVLSLQEEIAKLRKELH 1001

Query: 198  DLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNSSSQE 250
              + E         ++  +      V  LK +   L+ E E L R+++  ++E
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQ--LVSELKEQNTLLKTEKEELNRRIHDQAKE 1052

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	97.02
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	96.96
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.21
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.15
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	96.13
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	95.33
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	94.46
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.9
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.2
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.7
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	90.81
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.73
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	90.6
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	88.66
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	87.79
3l4q_C	170	Phosphatidylinositol 3-kinase regulatory subunit b	85.12
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	84.65
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	84.6

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=97.02  E-value=0.081  Score=41.47  Aligned_cols=55  Identities=11%  Similarity=0.082  Sum_probs=29.0

Q ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHH
Q 025508            8 GMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERAR   62 (251)
Q Consensus         8 emesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLr   62 (251)
                      .|.+|=..++.+.......-.++..++..+..-......+...+..+....+.+.
T Consensus         7 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (284)
T 1c1g_A            7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS   61 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555566666655555555555555555444444445555554444444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.21  E-value=0.018  Score=59.27  Aligned_cols=6  Identities=33%  Similarity=0.512  Sum_probs=0.0

Q ss_pred             hhhhHH
Q 025508          175 IQDLKD  180 (251)
Q Consensus       175 IqdLkD  180 (251)
                      |.+|..
T Consensus      1041 l~ele~ 1046 (1184)
T 1i84_S         1041 ISELEV 1046 (1184)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.15  E-value=0.022  Score=58.62  Aligned_cols=34  Identities=18%  Similarity=0.148  Sum_probs=16.4

Q ss_pred             HHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHH
Q 025508           29 EVQLLRSSCNAETKRREALEITCNTLKKENERAR   62 (251)
Q Consensus        29 Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLr   62 (251)
                      ++..++.++..-...+..++..+..|..+.+.+.
T Consensus       865 eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~  898 (1184)
T 1i84_S          865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ  898 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444555555555555544444

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=95.33  E-value=0.76  Score=35.90  Aligned_cols=21  Identities=19%  Similarity=0.151  Sum_probs=9.2

Q ss_pred             HHHHHHHHhhhhhhHHHHhhh
Q 025508          224 ETLKLKIMKLRKENEILKRKL  244 (251)
Q Consensus       224 etLKqKiMKLRKENE~LKR~l  244 (251)
                      ..+..++-+++-+-+.+..+|
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~L  281 (284)
T 1c1g_A          261 YAQKLKYKAISEELDHALNDM  281 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444444444443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=94.46  E-value=0.43  Score=35.99  Aligned_cols=75  Identities=21%  Similarity=0.299  Sum_probs=60.7

Q ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHH
Q 025508            8 GMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKE   87 (251)
Q Consensus         8 emesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkE   87 (251)
                      +++.+-.+=.++-=+-.++-..+.-+|.+|-.|...|+++|+.+..|+++-.-+          +...++--++..||++
T Consensus         8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a----------~l~r~dLE~kvesL~e   77 (86)
T 3swk_A            8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA----------SLARLDLERKVESLQE   77 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH----------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHH
Confidence            345555566667777788888899999999999999999999999999997743          3445778889999999


Q ss_pred             HHHhh
Q 025508           88 ELKRV   92 (251)
Q Consensus        88 EL~r~   92 (251)
                      |+.=+
T Consensus        78 El~fL   82 (86)
T 3swk_A           78 EIAFL   82 (86)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.90  E-value=1.4  Score=40.42  Aligned_cols=87  Identities=15%  Similarity=0.150  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh---hHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHH
Q 025508          118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD---QVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNK  194 (251)
Q Consensus       118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le---qV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~  194 (251)
                      ++.++..|+.+.......++.+..++.++.+-...+......+.   ++-.++..+-+..++.+...++-.+++-+...+
T Consensus       458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (597)
T 3oja_B          458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQK  537 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhc
Confidence            44555555555555555555555555554443333221111111   222222233333455555555555555555666


Q ss_pred             HHHHHHHHHH
Q 025508          195 RVQDLEKELL  204 (251)
Q Consensus       195 kLq~~ekEll  204 (251)
                      .++.++++..
T Consensus       538 ~~~~~~~~~~  547 (597)
T 3oja_B          538 ETEDLEQENI  547 (597)
T ss_dssp             HHHHHHHHHH
T ss_pred             chhhHHhhhH
Confidence            6666555533

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.20  E-value=8.9  Score=39.83  Aligned_cols=13  Identities=23%  Similarity=0.350  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHH
Q 025508           20 YEDFKRAISEVQL   32 (251)
Q Consensus        20 ~e~fk~g~~Eiq~   32 (251)
                      |...+.|+.-||+
T Consensus       835 y~~lr~aai~IQs  847 (1080)
T 2dfs_A          835 YQCMRDATIALQA  847 (1080)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3344455555554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.70  E-value=6.1  Score=41.04  Aligned_cols=57  Identities=11%  Similarity=0.098  Sum_probs=38.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhh
Q 025508          112 QDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVE  168 (251)
Q Consensus       112 ~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve  168 (251)
                      ..-+.++.+|+.++..+..++-.-|..+.++..+|...-+++...+.+|++-..+.+
T Consensus       987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666777777777777666777777777777766677666666666666555

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=90.81  E-value=3.1  Score=32.71  Aligned_cols=56  Identities=16%  Similarity=0.239  Sum_probs=14.0

Q ss_pred             hhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHH
Q 025508           78 RKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISN  141 (251)
Q Consensus        78 ~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~q  141 (251)
                      |++|+..|.....+-++.+.+-..|    |..+    ...|..|+..|.++..+.++=|++|..
T Consensus        13 y~~K~eel~~~~~~~~~~l~~~k~E----i~el----rr~iq~L~~el~~l~~~~~~LE~~l~e   68 (129)
T 3tnu_B           13 YQTKYEELQQTAGRHGDDLRNTKHE----ISEM----NRMIQRLRAEIDNVKKQCANLQNAIAD   68 (129)
T ss_dssp             ---------------------CHHH----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            6677777777666655554432222    2212    223444455555544444444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.73  E-value=9.9  Score=34.86  Aligned_cols=21  Identities=38%  Similarity=0.327  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHhhhhHHHhh
Q 025508          194 KRVQDLEKELLMNRTKMAEHN  214 (251)
Q Consensus       194 ~kLq~~ekElli~ktK~~eqq  214 (251)
                      ++...+++.+-..|-++.+-.
T Consensus       544 ~~~~~le~~~~~~~~~~~~l~  564 (597)
T 3oja_B          544 QENIALEKQLDNKRAKQAELR  564 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhhhHHHHHH
Confidence            333333333333333333333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=90.60  E-value=2.2  Score=33.66  Aligned_cols=20  Identities=15%  Similarity=0.064  Sum_probs=0.0

Q ss_pred             hhHhhhHHHHHHHhhhhhhh
Q 025508           78 RKAKCQSLKEELKRVNDEHL   97 (251)
Q Consensus        78 ~rtk~qsLkEEL~r~n~e~l   97 (251)
                      |++|+..|.....+-.+.+.
T Consensus        15 y~~K~eel~~~~~~~~~~l~   34 (131)
T 3tnu_A           15 FFTKTEELNREVATNSELVQ   34 (131)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHhhHHHHH
Confidence            56666666666665544443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=88.66  E-value=6.2  Score=29.60  Aligned_cols=83  Identities=18%  Similarity=0.273  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHH
Q 025508          118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQ  197 (251)
Q Consensus       118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq  197 (251)
                      |.+|-.||-++-.+.|.=+.-|+.++.++...|.--+.=.+.    +..    -.++|..||-.+--.-=.|-+|..+++
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~----R~~----~E~d~~~LrkdvD~a~l~r~dLE~kve   73 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ----REE----AENTLQSFRQDVDNASLARLDLERKVE   73 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            567888888888888877777766666655554433321111    112    235778888888888888999999999


Q ss_pred             HHHHHHHHhhh
Q 025508          198 DLEKELLMNRT  208 (251)
Q Consensus       198 ~~ekElli~kt  208 (251)
                      ++..|+-+.|.
T Consensus        74 sL~eEl~fLkk   84 (86)
T 3swk_A           74 SLQEEIAFLKK   84 (86)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhh
Confidence            99999988764

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=87.79  E-value=6.3  Score=30.91  Aligned_cols=97  Identities=16%  Similarity=0.299  Sum_probs=37.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHH---HhhhhhHHHhhhhhhhhhhhhhHHHHH-HH---
Q 025508          113 DYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTL---AKKLDQVKFDVEMKYNLEIQDLKDCLL-LE---  185 (251)
Q Consensus       113 ~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L---~~~LeqV~~eve~kY~~EIqdLkD~L~-~E---  185 (251)
                      -|..++.+|...+..--....+.-.-|..|+.-+....+-|+.+   +..|+.--.+++..|..++.++...|. +|   
T Consensus        12 ~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL   91 (129)
T 3tnu_B           12 WYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEAL   91 (129)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            45566666655443322222222222333333333333333322   334455556777888888777766553 23   


Q ss_pred             HHHhHHHHHHHHHHHHHHHHhhhhH
Q 025508          186 QEEKNELNKRVQDLEKELLMNRTKM  210 (251)
Q Consensus       186 qEeKn~l~~kLq~~ekElli~ktK~  210 (251)
                      +.-|.++.+.++.-+ +|+=-|+.+
T Consensus        92 ~~~r~e~~~ql~EYq-~LlnvKl~L  115 (129)
T 3tnu_B           92 QKAKQDMARLLREYQ-ELMNTKLAL  115 (129)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            234556666665554 455555554

>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B

Probab=85.12  E-value=17  Score=30.90  Aligned_cols=45  Identities=29%  Similarity=0.652  Sum_probs=33.8

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhh
Q 025508           13 LSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKC   82 (251)
Q Consensus        13 L~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~   82 (251)
                      -+.||++|++|...--|||.          +|.|+|               .|.|+..=|-+|+.-..+|
T Consensus        30 s~~yd~l~e~y~r~sqEiq~----------Kr~Aie---------------AF~E~ik~FeeQ~~~qer~   74 (170)
T 3l4q_C           30 SREYDQLYEEYTRTSQELQM----------KRTAIE---------------AFNETIKIFEEQGQTQEKS   74 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----------HHHHHH---------------HHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHhhhHHHHH----------HHHHHH---------------HHHHHHHHHHHHHHHHHHH
Confidence            46789999999888878775          567776               3667777788888766665

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=84.65  E-value=18  Score=30.91  Aligned_cols=85  Identities=18%  Similarity=0.182  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhh-hhhhhhhhhhhHHHHHHHHHHhHHHHHHH
Q 025508          118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDV-EMKYNLEIQDLKDCLLLEQEEKNELNKRV  196 (251)
Q Consensus       118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ev-e~kY~~EIqdLkD~L~~EqEeKn~l~~kL  196 (251)
                      +..+..++..+..+...-+.-|.++..++....+.|.-...+|+.|+..= -.-+..||..++.-+..=-++--++..++
T Consensus        41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~i  120 (256)
T 3na7_A           41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEI  120 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666777777777777777777777777765321 12344455555544444333333444444


Q ss_pred             HHHHHH
Q 025508          197 QDLEKE  202 (251)
Q Consensus       197 q~~ekE  202 (251)
                      ..++.+
T Consensus       121 e~~~~~  126 (256)
T 3na7_A          121 KRKSEK  126 (256)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.60  E-value=6.5  Score=30.96  Aligned_cols=51  Identities=16%  Similarity=0.345  Sum_probs=26.5

Q ss_pred             hhhhHHHhhhhhhhhhhhhhHHHHH-HH---HHHhHHHHHHHHHHHHHHHHhhhhH
Q 025508          159 KLDQVKFDVEMKYNLEIQDLKDCLL-LE---QEEKNELNKRVQDLEKELLMNRTKM  210 (251)
Q Consensus       159 ~LeqV~~eve~kY~~EIqdLkD~L~-~E---qEeKn~l~~kLq~~ekElli~ktK~  210 (251)
                      .|+.--.+++..|..++.++...|. +|   +.-|.++.+.++.-+ +|+=-|+.+
T Consensus        63 sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq-~Ll~vKl~L  117 (131)
T 3tnu_A           63 SLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK-ILLDVKTRL  117 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            3444456667777777766655543 22   123455555555544 444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00