Citrus Sinensis ID: 025577

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP
cHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHcccccccccccccccccccc
cHHHHHHHcccHcccccHHccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccEEEccccHEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccHHHEcccccccc
masntlmscgiattafpsvlssskskfftavslpaaanatskyamsadwmpgeprppyldgsapgdfgfdplrlgevpenlerykesELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQewaavpggqatylgtpvpwgtlptILVIEFLSIAFVEHQrsmekdpekkkypggafdplgfskdpqkfEEYKVKEIKNGRLALLAFVGFcvqqsaypgtgplenlathladpwhnnigdviiprgivp
MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRsmekdpekkkypgGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP
MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP
********CGIATTAFPSVL*****KFFTAVSLP********************************FGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVE******************************FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGI**
*AS************************************************GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRG*V*
MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEH***********KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP
*********************************************SADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIV*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query250 2.2.26 [Sep-21-2011]
P12360246 Chlorophyll a-b binding p N/A no 0.976 0.991 0.812 1e-113
Q01667241 Chlorophyll a-b binding p yes no 0.952 0.987 0.829 1e-108
Q9SDM1245 Chlorophyll a-b binding p N/A no 0.96 0.979 0.708 1e-100
Q9XF88287 Chlorophyll a-b binding p no no 0.852 0.742 0.372 2e-35
Q07473290 Chlorophyll a-b binding p no no 0.74 0.637 0.390 6e-35
P27521251 Chlorophyll a-b binding p no no 0.832 0.828 0.379 1e-34
P13851266 Chlorophyll a-b binding p N/A no 0.736 0.691 0.446 7e-33
P10708270 Chlorophyll a-b binding p N/A no 0.86 0.796 0.365 8e-33
Q9SQL2252 Chlorophyll a-b binding p N/A no 0.836 0.829 0.369 1e-32
Q36718231 Chlorophyll a-b binding p N/A no 0.736 0.796 0.392 5e-32
>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1 Back     alignment and function desciption
 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/251 (81%), Positives = 217/251 (86%), Gaps = 7/251 (2%)

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSADWMPGEPRPPYL 59
           MASNTLMSCGI     PS LSS+KSKF  A+ +   A N  S+++MSADWMPG+PRP YL
Sbjct: 1   MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYL 59

Query: 60  DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
           DGSAPGDFGFD L LGEVP NLERYKESELIHCRWAMLAV       I+VPEALGLGNWV
Sbjct: 60  DGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPG-----IIVPEALGLGNWV 114

Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
           +AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFD
Sbjct: 115 KAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFD 174

Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
           PLG+SKDP KFEE KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNI
Sbjct: 175 PLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234

Query: 240 GDVIIPRGIVP 250
           GDVIIP+GI P
Sbjct: 235 GDVIIPKGIFP 245
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Solanum lycopersicum (taxid: 4081)
>sp|Q01667|CAB6_ARATH Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1 Back     alignment and function description
>sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1 Back     alignment and function description
>sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1 Back     alignment and function description
>sp|P27521|CA4_ARATH Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1 Back     alignment and function description
>sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1 Back     alignment and function description
>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1 Back     alignment and function description
>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1 Back     alignment and function description
>sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
449452104246 PREDICTED: chlorophyll a-b binding prote 0.98 0.995 0.864 1e-122
388491152241 unknown [Lotus japonicus] 0.952 0.987 0.833 1e-115
356559472246 PREDICTED: chlorophyll a-b binding prote 0.972 0.987 0.822 1e-115
170388246 chlorophyll a/b-binding protein [Solanum 0.976 0.991 0.824 1e-114
388521809241 unknown [Lotus japonicus] 0.952 0.987 0.829 1e-114
224100797244 light-harvesting complex I protein Lhca1 0.968 0.991 0.847 1e-114
255585090244 chlorophyll A/B binding protein, putativ 0.976 1.0 0.848 1e-113
225449078244 PREDICTED: chlorophyll a-b binding prote 0.976 1.0 0.836 1e-113
224109746243 light-harvesting complex I protein Lhca1 0.972 1.0 0.844 1e-113
407971012246 chlorophyll a-b binding protein 6A, chlo 0.976 0.991 0.812 1e-111
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Cucumis sativus] gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/251 (86%), Positives = 231/251 (92%), Gaps = 6/251 (2%)

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAA-NATSKYAMSADWMPGEPRPPYL 59
           MASNTLMSCGIATTAFPSVLSSSKSKF   V +   A NA+S+++MSA+WMPG+PRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 60  DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
           DGSAPGDFGFDPL LGEVPENLER+KESELIHCRWAMLAV       ILVPEALGLGNWV
Sbjct: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPG-----ILVPEALGLGNWV 115

Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
           +AQEWAAVPGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEKKKYPGGAFD
Sbjct: 116 KAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFD 175

Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
           PLG+SKDP+K +EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI
Sbjct: 176 PLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 235

Query: 240 GDVIIPRGIVP 250
           GD+IIPR I P
Sbjct: 236 GDIIIPRTISP 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum] gi|225895|prf||1402358A photosystem I protein CAB Back     alignment and taxonomy information
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa] gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic isoform 1 [Vitis vinifera] gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa] gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides] gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum lycopersicum] gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic; AltName: Full=LHCI type I CAB-6A; AltName: Full=Light-harvesting complex I 26 kDa protein; Flags: Precursor gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
TAIR|locus:2082717241 LHCA1 "photosystem I light har 0.952 0.987 0.829 8.1e-108
TAIR|locus:2097608287 LHCB4.2 "light harvesting comp 0.608 0.529 0.462 1.7e-40
TAIR|locus:2149765290 LHCB4.1 "light harvesting comp 0.608 0.524 0.456 3.6e-40
TAIR|locus:2047751276 LHCB4.3 "light harvesting comp 0.56 0.507 0.442 1.9e-35
TAIR|locus:2082767257 LHCA2 "photosystem I light har 0.928 0.902 0.376 1.3e-34
TAIR|locus:2079117251 LHCA4 "light-harvesting chloro 0.832 0.828 0.383 4.1e-33
TAIR|locus:2122794280 LHCB5 "light harvesting comple 0.72 0.642 0.431 8.5e-33
TAIR|locus:2040934265 LHB1B2 "photosystem II light h 0.94 0.886 0.394 2.3e-32
TAIR|locus:2040944266 LHB1B1 "light-harvesting chlor 0.736 0.691 0.435 3.7e-32
UNIPROTKB|P12330265 CAB1R "Chlorophyll a-b binding 0.94 0.886 0.378 9.8e-32
TAIR|locus:2082717 LHCA1 "photosystem I light harvesting complex gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
 Identities = 204/246 (82%), Positives = 217/246 (88%)

Query:     1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
             MASN+LMSCGIA   +PS+LSSSKSKF +A V LP A N   +  M+A WMPGEPRP YL
Sbjct:     1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGNV-GRIRMAAHWMPGEPRPAYL 58

Query:    60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
             DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV       ILVPEALG GNWV
Sbjct:    59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWV 113

Query:   120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
             +AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFD
Sbjct:   114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFD 173

Query:   180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
             PLG+SKDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI
Sbjct:   174 PLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233

Query:   240 GDVIIP 245
             GD++IP
Sbjct:   234 GDIVIP 239
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0015979 "photosynthesis" evidence=ISS
GO:0016020 "membrane" evidence=IEA;IDA
GO:0016168 "chlorophyll binding" evidence=ISS
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009768 "photosynthesis, light harvesting in photosystem I" evidence=IMP
GO:0010287 "plastoglobule" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009637 "response to blue light" evidence=IEP;RCA
GO:0010114 "response to red light" evidence=IEP;RCA
GO:0010218 "response to far red light" evidence=IEP;RCA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
TAIR|locus:2097608 LHCB4.2 "light harvesting complex photosystem II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149765 LHCB4.1 "light harvesting complex photosystem II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047751 LHCB4.3 "light harvesting complex photosystem II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082767 LHCA2 "photosystem I light harvesting complex gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079117 LHCA4 "light-harvesting chlorophyll-protein complex I subunit A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122794 LHCB5 "light harvesting complex of photosystem II 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040934 LHB1B2 "photosystem II light harvesting complex gene B1B2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040944 LHB1B1 "light-harvesting chlorophyll-protein complex II subunit B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P12330 CAB1R "Chlorophyll a-b binding protein 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q01667CAB6_ARATHNo assigned EC number0.82920.9520.9875yesno
Q9SDM1CB121_HORVUNo assigned EC number0.70850.960.9795N/Ano
P12360CB11_SOLLCNo assigned EC number0.81270.9760.9918N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Lhca1-2
light-harvesting complex I protein Lhca1 (244 aa)
(Populus trichocarpa)
Predicted Functional Partners:
MYB124
hypothetical protein (446 aa)
      • 0.700

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 1e-162
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 3e-51
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 5e-49
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 7e-46
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 6e-45
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 3e-42
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 4e-42
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 7e-41
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 6e-39
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 1e-38
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 2e-37
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 3e-21
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 5e-12
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 1e-09
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 1e-06
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 2e-04
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information 
 Score =  447 bits (1152), Expect = e-162
 Identities = 217/250 (86%), Positives = 229/250 (91%), Gaps = 7/250 (2%)

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
           MASNTLMSCGIA   FPS+LSSSKSKF ++V LP A N +S+  MSADWMPG+PRPPYLD
Sbjct: 1   MASNTLMSCGIAA-VFPSLLSSSKSKFASSVPLPNA-NGSSRVTMSADWMPGQPRPPYLD 58

Query: 61  GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
           GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV       ILVPEALGLGNWV+
Sbjct: 59  GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG-----ILVPEALGLGNWVK 113

Query: 121 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDP 180
           AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDP
Sbjct: 114 AQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDP 173

Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
           LG+SKDP+KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG
Sbjct: 174 LGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 233

Query: 241 DVIIPRGIVP 250
           D+IIPR I P
Sbjct: 234 DIIIPRSISP 243

Length = 243
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 250
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 100.0
PLN00098 267 light-harvesting complex I chlorophyll a/b-binding 99.56
PLN00101 250 Photosystem I light-harvesting complex type 4 prot 99.55
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 99.47
PLN00171 324 photosystem light-harvesting complex -chlorophyll 99.45
PLN00170 255 photosystem II light-harvesting-Chl-binding protei 99.44
PLN00097 244 photosystem I light harvesting complex Lhca2/4, ch 99.43
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 99.42
PLN00025 262 photosystem II light harvesting chlorophyll a/b bi 99.41
PLN00100 246 light-harvesting complex chlorophyll-a/b protein o 99.4
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.39
PLN00187286 photosystem II light-harvesting complex II protein 99.38
PLN00099 243 light-harvesting complex IChlorophyll A-B binding 99.36
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.32
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.04
PLN00084214 photosystem II subunit S (PsbS); Provisional 97.82
PHA0233735 putative high light inducible protein 97.81
PLN00014250 light-harvesting-like protein 3; Provisional 97.2
PHA0233735 putative high light inducible protein 96.73
PLN00014250 light-harvesting-like protein 3; Provisional 93.81
PLN00084214 photosystem II subunit S (PsbS); Provisional 88.75
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.5e-75  Score=521.09  Aligned_cols=243  Identities=89%  Similarity=1.491  Sum_probs=221.3

Q ss_pred             CcccchhhhhccccccccccccccccccccccchhhhcccccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhh
Q 025577            1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPEN   80 (250)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e~   80 (250)
                      ||++++|+|.|+.+ .++++++++|+|.+..++.-. ..+.|.+++..|+|+.++|+||||++|||+|||||||++++++
T Consensus         1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~P~~~~P~~Ldg~~pgd~GfDPlgls~~~~~   78 (243)
T PLN00099          1 MASNTLMSCGIAAV-FPSLLSSSKSKFASSVPLPNA-NGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPEN   78 (243)
T ss_pred             CcchhhhhcCcccc-chhhhhhhhhhhhcccccccC-CccccccccccccCCCCCCccCCCCCCcccCCCccccccCHHH
Confidence            89999999999754 777788999999655554332 4468889999999999999999999999999999999999999


Q ss_pred             HhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHH
Q 025577           81 LERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEH  160 (250)
Q Consensus        81 l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~  160 (250)
                      ++||||+|||||||||||++|     +++||.++.+.|.++.+|..++++..+|.+++++|+.+++++++|+++||++|.
T Consensus        79 ~~~~r~~ELkHGR~AMLAv~G-----~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~  153 (243)
T PLN00099         79 LERYKESELIHCRWAMLAVPG-----ILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEH  153 (243)
T ss_pred             HHHHHHHhccCCcHHHHHHhh-----HHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999     999999988889888888888888888888888888899999999999999999


Q ss_pred             hhhcccCCCCCcCCCCCCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCccccccc
Q 025577          161 QRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG  240 (250)
Q Consensus       161 ~r~~~~~~~~~~~PGd~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~  240 (250)
                      +|...++++++.||||.|||||+.+|++++++||+||||||||||+|++||++|+..+||++|++||.+||+||||+||.
T Consensus       154 ~r~~~~~~~~~~yPGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~  233 (243)
T PLN00099        154 QRSMEKDPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG  233 (243)
T ss_pred             HhhccCCCCCCcCCCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCcee
Confidence            98876655567899999999999999999999999999999999999999999996679999999999999999999999


Q ss_pred             cccccCCCCC
Q 025577          241 DVIIPRGIVP  250 (250)
Q Consensus       241 ~~~~~~~~~~  250 (250)
                      +.++|+++.|
T Consensus       234 ~~~~~~~~~~  243 (243)
T PLN00099        234 DIIIPRSISP  243 (243)
T ss_pred             eeecccCCCC
Confidence            9999999987

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 1e-109
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 8e-98
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 1e-87
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 5e-37
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 6e-32
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 1e-31
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 4e-31
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 3e-30
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 1e-29
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 7e-28
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 9e-27
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 1e-22
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 3e-21
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 7e-20
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 7e-16
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 6e-13
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure 
Iteration: 1

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/246 (82%), Positives = 217/246 (88%), Gaps = 8/246 (3%)
Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
           MASN+LMSCGIA   +PS+LSSSKSKF +A V LP A N   +  M+A WMPGEPRP YL
Sbjct: 1   MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60  DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV 119
           DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV       ILVPEALG GNWV
Sbjct: 59  DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWV 113
Query: 120 QAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFD 179
           +AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFD
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFD 173
Query: 180 PLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 239
           PLG+SKDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI
Sbjct: 174 PLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
Query: 240 GDVIIP 245
           GD++IP
Sbjct: 234 GDIVIP 239
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 1e-73
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 1e-45
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 9e-45
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 2e-44
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 7e-44
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 5e-40
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
 Score =  223 bits (568), Expect = 1e-73
 Identities = 200/245 (81%), Positives = 213/245 (86%), Gaps = 6/245 (2%)

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
           MASN+LMSCGIA   +PS+LSSSKSKF +A      A    +  M+A WMPGEPRP YLD
Sbjct: 1   MASNSLMSCGIAA-VYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLD 59

Query: 61  GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQ 120
           GSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAV       ILVPEALG GNWV+
Sbjct: 60  GSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVP-----GILVPEALGYGNWVK 114

Query: 121 AQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDP 180
           AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDP
Sbjct: 115 AQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDP 174

Query: 181 LGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 240
           LG+SKDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG
Sbjct: 175 LGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 234

Query: 241 DVIIP 245
           D++IP
Sbjct: 235 DIVIP 239
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
2bhw_A 232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.43
2wsc_4 251 Chlorophyll A-B binding protein P4, chloroplastic; 99.42
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.39
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 99.38
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 99.36
2wsc_1 241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.29
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
Probab=100.00  E-value=3.5e-70  Score=488.23  Aligned_cols=240  Identities=84%  Similarity=1.411  Sum_probs=156.4

Q ss_pred             Ccccchhhhhccccccccccccccccc-cccccchhhhcccccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChh
Q 025577            1 MASNTLMSCGIATTAFPSVLSSSKSKF-FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE   79 (250)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~~~~P~~ldg~~pGd~GFDPLGLs~~~e   79 (250)
                      |||+.++||+++++ +++++++++++| ..+.+.+. .+.++|+++++.|+|+.++|+||||++|||+|||||||+++++
T Consensus         1 ~~~~~~~~~~~~a~-~p~~~~~~~~~~~~~~~~~~~-~~~~~~~sm~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~~~   78 (241)
T 2wsc_1            1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPN-AGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPA   78 (241)
T ss_dssp             --------------------------------------------------------------CTTSSCCCSSTTTTTTTT
T ss_pred             CchHHHHHHHHHhc-CccccchhhhhhccccCcccc-cccccccccccccCCCCCCcccccCCCCCcCCcCccccCCCHH
Confidence            89999999999987 555555555555 66666664 3457899999999999999999999999999999999999999


Q ss_pred             hHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHH
Q 025577           80 NLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVE  159 (250)
Q Consensus        80 ~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E  159 (250)
                      +++||||+|||||||||||++|     +++||.++.++|.++.+|.+++++.+.|.+++++|+.+++++++|+++||++|
T Consensus        79 ~~~~~r~~El~hgR~AMla~~G-----~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E  153 (241)
T 2wsc_1           79 NLERYKESELIHCRWAMLAVPG-----ILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVE  153 (241)
T ss_dssp             HHHHSHHHHHHHHHHHTTTSTT-----SSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHhhchhHHhhhhc-----ccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999     99999999888988888888899888888888889889999999999999999


Q ss_pred             HhhhcccCCCCCcCCCCCCCCCCCCCChhHHHHhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCcccccc
Q 025577          160 HQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI  239 (250)
Q Consensus       160 ~~r~~~~~~~~~~~PGd~FDPLgl~kd~~~~~~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni  239 (250)
                      .+|..++++.++.||||.|||||+.+|+++++++|++|||||||||+|++|+++|+..+||+||++||.+|++|||||||
T Consensus       154 ~~r~~~~~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~  233 (241)
T 2wsc_1          154 HQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI  233 (241)
T ss_dssp             HHHTSCCSSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC---
T ss_pred             HHHHhccCCCCCCCCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccce
Confidence            99988777667789999999999999999999999999999999999999999999558999999999999999999999


Q ss_pred             ccccccCC
Q 025577          240 GDVIIPRG  247 (250)
Q Consensus       240 ~~~~~~~~  247 (250)
                      .++++|++
T Consensus       234 ~~~~~~~~  241 (241)
T 2wsc_1          234 GDIVIPFN  241 (241)
T ss_dssp             --------
T ss_pred             eeeeccCC
Confidence            99999874
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 250
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 6e-55
d1rwta_ 218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 1e-08
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  173 bits (440), Expect = 6e-55
 Identities = 78/204 (38%), Positives = 101/204 (49%), Gaps = 19/204 (9%)

Query: 49  WMPGEP--RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFW 106
           ++       P YL G  PGD+G+D   L   PE   + +E E+IHCRWAML  +      
Sbjct: 11  YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG----- 65

Query: 107 ILVPEALGLGNWVQAQE------WAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFV 158
            + PE L        +             G   YLG P  V   ++  I   + + +  V
Sbjct: 66  CVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 125

Query: 159 EHQRSMEK---DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQ 215
           E  R       +     YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q
Sbjct: 126 EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-Q 184

Query: 216 SAYPGTGPLENLATHLADPWHNNI 239
           +   G GPLENLA HLADP +NN 
Sbjct: 185 AIVTGKGPLENLADHLADPVNNNA 208
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_ 218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.51
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=3.5e-60  Score=415.15  Aligned_cols=191  Identities=41%  Similarity=0.714  Sum_probs=153.7

Q ss_pred             ccccCCCC--CCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhhhhcchhhhhhhhhccCCCcc-cc
Q 025577           45 MSADWMPG--EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVVSSKFFWILVPEALGLGNWV-QA  121 (250)
Q Consensus        45 ~~~~~~P~--~~~P~~ldg~~pGd~GFDPLGLs~~~e~l~~~REAELkHGR~AMLAvvG~~~~~~lv~e~~~~~~~~-~a  121 (250)
                      .++.|+|.  ...|+||||+||||+|||||||++++++++||||||||||||||||++|     ++++|.++...+. ..
T Consensus         7 ~r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG-----~~~~E~~~~~~~~~~~   81 (218)
T d1rwta_           7 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG-----CVFPELLARNGVKFGE   81 (218)
T ss_dssp             TCCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHTTTCCCSC
T ss_pred             CCcccCCccccCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcc-----eeehhhhccCCCCCCC
Confidence            35779973  3579999999999999999999999999999999999999999999999     9999997654331 11


Q ss_pred             cccc-----ccCCCcccccCCCC--CCCchhHHHHHHHHHHHHHHHhhhcccC---CCCCcCCCCCCCCCCCCCChhHHH
Q 025577          122 QEWA-----AVPGGQATYLGTPV--PWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGAFDPLGFSKDPQKFE  191 (250)
Q Consensus       122 ~~~~-----~~p~g~~~~~~~p~--~~~~~p~~~~~~~~~ig~~E~~r~~~~~---~~~~~~PGd~FDPLgl~kd~~~~~  191 (250)
                      ..|.     ..+.+...+...+.  .+..+..++++++..++.+|..|.....   ..+..|||++|||+++.+++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~fdPlg~~~~~e~~~  161 (218)
T d1rwta_          82 AVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA  161 (218)
T ss_dssp             CSHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCBTTBCCSSSSCCCGGGCTTCTTCSHHHHH
T ss_pred             cccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCCCcccccCCCCCCCCccccccCCCHHHHH
Confidence            1111     11222223333332  2344555677888889999988765432   234567888999999999999999


Q ss_pred             HhhHHHhhhhHHHHHHHHHHHhhcccccCCcchhhhHhhhcCcccccccc
Q 025577          192 EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD  241 (250)
Q Consensus       192 ~~k~kELkNGRLAMlA~~G~~~q~~~~tG~gPl~~l~~hl~~P~~~ni~~  241 (250)
                      ++|+||||||||||||++||++|+ ++||++|++||.+|++||+|+||++
T Consensus       162 ~~k~kElkNGRLAMlAi~G~~~qe-~vtG~gp~~nl~~h~~~P~~~n~~~  210 (218)
T d1rwta_         162 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENLADHLADPVNNNAWN  210 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHCSCHHHHHHHHHHCTTTSSGGG
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhh-hhcCCCHHHHHHHHhcCchhhhHHH
Confidence            999999999999999999999999 7899999999999999999999985
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure