Citrus Sinensis ID: 025613

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGAQ
Secondary Structure (PSIPRED)
cccccccccccEEEEcccccHHHHHHHHHHccccccccccccccEEEEEEcccHHHHHHHHHcccccccccccccccccccccccccccccccccEEEccEEccccccHHHHHHHHHHcccccccEEcccccEEEEEEHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccEEEcccccHHHHHHHHHHccccEEcEEccccEEEEEEEHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEEEcccccccccEEEEcccEEEcccEcccccccccHHHHHHcccHHHHHHHHHHHcccEEEEccccHHHHccEHHHHccccccEEEEcccccccHcHHHHHHHHHHHccccccEEEcccccEEEEEEcHHHHHHHHccccccccccccccHHHHcccHHHHHHHHHHHccccHHHccccccEEEcccccHHHHHHHHHHccccccEEEccccEEEEEEEHHHHHHHHHcccHcHccccc
Coil and Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgrtsfalqlpclllsrpgcrvfSVLATSSDRVSALRRSSAvfasgtltansaapssgvytvgdfmttkeelhvvkptttvdeafVPTALEILVEKritgfpvidddwklvglvsdydllaldsisgsgradnsmfpevdsTWKTFNEVQKLLSKtngkmvgdlmtpapvvvRETTNLEDAARLLLETKyrrlpvvdadgklvgiITRGNVVRAALQIKHATEMGAQ
Flexible Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVfasgtltansaapssgvYTVGDFMTTKEELHvvkptttvdeafVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSisgsgradnSMFPEVDSTWKTFNEVQKLLsktngkmvgdlMTPAPVVVRETTNLEDAARLLletkyrrlpvvdadgklvgiiTRGNVVRAALQIKHATEMGAQ
Low Complexity Region (SEG)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGAQ
Disordered region (IsUnstruct)
**************************TSFALQLPCLLLSRPGCRVFSVLATSSDRVSAL****AVFASGTL********SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG********FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK********
Disordered Region (DISOPRED)
*******HSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVF**********A*SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ**********
Disordered Region (DISEMBL)
MDSIVLPHSISVARLR*********RTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGAQ
Disordered Region (DISPRO)
*DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
O23193	236	CBS domain-containing pro	yes	no	0.732	0.775	0.797	8e-82
Q9C5D0	238	CBS domain-containing pro	no	no	0.728	0.764	0.686	7e-72
Q58821	168	Uncharacterized protein M	yes	no	0.6	0.892	0.273	6e-12
O58045	486	Inosine-5'-monophosphate	yes	no	0.408	0.209	0.305	5e-08
Q9UY49	485	Inosine-5'-monophosphate	no	no	0.408	0.210	0.291	8e-08
P42851	485	Inosine-5'-monophosphate	yes	no	0.408	0.210	0.284	1e-07
O67820	490	Inosine-5'-monophosphate	yes	no	0.444	0.226	0.271	4e-07
P65167	529	Inosine-5'-monophosphate	yes	no	0.34	0.160	0.322	2e-06
P65168	529	Inosine-5'-monophosphate	yes	no	0.34	0.160	0.322	2e-06
Q57647	265	Uncharacterized protein M	no	no	0.48	0.452	0.261	1e-05

>sp|O23193|CBSX1_ARATH CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2

 Score =  303 bits (776), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 150/188 (79%), Positives = 166/188 (88%), Gaps = 5/188 (2%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRI 121
           S++  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEA     LE+LVE RI
Sbjct: 54  SASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEA-----LELLVENRI 108

Query: 122 TGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNG 181
           TGFPVID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNG
Sbjct: 109 TGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNG 168

Query: 182 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241
           K+VGDLMTPAP+VV E TNLEDAA++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQI
Sbjct: 169 KLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI 228

Query: 242 KHATEMGA 249
           K + +  A
Sbjct: 229 KRSGDRNA 236

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5D0|CBSX2_ARATH CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1

 Score =  270 bits (690), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 136/198 (68%), Positives = 163/198 (82%), Gaps = 16/198 (8%)

Query: 60  RRSSAVFASGTLTANSAAPSS-----------GVYTVGDFMTTKEELHVVKPTTTVDEAF 108
           RRSS    S T++A  AAP+S           G YTVGDFMT ++ LHVVKP+T+VD+A 
Sbjct: 43  RRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDA- 101

Query: 109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 168
               LE+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++FP+VDSTWKT
Sbjct: 102 ----LELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKT 157

Query: 169 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGI 228
           FNE+QKL+SKT GK+VGDLMTP+P+VVR++TNLEDAARLLLETK+RRLPVVDADGKL+GI
Sbjct: 158 FNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGI 217

Query: 229 ITRGNVVRAALQIKHATE 246
           +TRGNVVRAALQIK  TE
Sbjct: 218 LTRGNVVRAALQIKRETE 235

Arabidopsis thaliana (taxid: 3702)

>sp|Q58821|Y1426_METJA Uncharacterized protein MJ1426 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1426 PE=4 SV=1

 Score = 71.2 bits (173), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 88/161 (54%), Gaps = 11/161 (6%)

Query: 86  GDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145
           G+ M  K+ +   KP    ++  +   + +  + +I+G PV++ D KLVG++S+ D++  
Sbjct: 12  GEIMLIKDIMK--KPIVVYEDNDLIDVIRLFRKNKISGAPVLNKDGKLVGIISESDIVK- 68

Query: 146 DSISGSGRADNSMFPE----VDSTWKTFNEVQKLLSKTNGKM---VGDLMTPAPVVVRET 198
            +I       N + P     ++   KT  ++++ +      +   V D+MT   +V +  
Sbjct: 69  -TIVTHNEDLNLILPSPLDLIELPLKTALKIEEFMEDLKNALKTKVRDVMTRKVIVAKPD 127

Query: 199 TNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239
             + DAA+L+++   +RLPVVD +G L+GI+TRG+++ A +
Sbjct: 128 MTINDAAKLMVKNNIKRLPVVDDEGNLIGIVTRGDLIEALI 168

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O58045|IMDH_PYRHO Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=guaB PE=1 SV=1

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 42/144 (29%)

Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGS 151
           E++  + P  TVD A        L+EK  I G PV++D+ K+VG+++  D+ A +     
Sbjct: 101 EDVITIAPDETVDFAL------FLMEKHGIDGLPVVEDE-KVVGIITKKDIAARE----- 148

Query: 152 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLET 211
                                        GK+V +LMT   + V E+  +E+A ++++E 
Sbjct: 149 -----------------------------GKLVKELMTKEVITVPESIEVEEALKIMIEN 179

Query: 212 KYRRLPVVDADGKLVGIITRGNVV 235
           +  RLPVVD  GKLVG+IT  ++V
Sbjct: 180 RIDRLPVVDERGKLVGLITMSDLV 203

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q9UY49|IMDH_PYRAB Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=guaB PE=3 SV=1

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 42/144 (29%)

Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGS 151
           E++  + P  TVD A        L+EK  I G PV++++ K+VG++S  D+ A +     
Sbjct: 101 EDVITISPEETVDFAL------FLMEKHDIDGLPVVENE-KVVGIISKKDIAARE----- 148

Query: 152 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLET 211
                                        GK+V +LMT   + V E   +E+A ++++E 
Sbjct: 149 -----------------------------GKLVKELMTKDVITVPENIEVEEALKIMIEN 179

Query: 212 KYRRLPVVDADGKLVGIITRGNVV 235
           +  RLPVVD +G+L+G+IT  ++V
Sbjct: 180 RIDRLPVVDKEGRLIGLITMSDLV 203

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P42851|IMDH_PYRFU Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=guaB PE=3 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 42/144 (29%)

Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGS 151
           E++  + P  T+D A        L+EK  I G PV+++D ++VG+++  D+ A +     
Sbjct: 101 EDVITIAPDETIDYAL------FLMEKHGIDGLPVVEED-RVVGIITKKDIAARE----- 148

Query: 152 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLET 211
                                        G+ V +LMT   + V E+ ++E+A ++++E 
Sbjct: 149 -----------------------------GRTVKELMTREVITVPESVDVEEALKIMMEN 179

Query: 212 KYRRLPVVDADGKLVGIITRGNVV 235
           +  RLPVV+ DGKLVG+IT  ++V
Sbjct: 180 RIDRLPVVNEDGKLVGLITMSDLV 203

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|O67820|IMDH_AQUAE Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=guaB PE=3 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 29/140 (20%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
           ++ P T   +  V  AL+I+ + +I+G PV+D++ KL+G++++ DL  +           
Sbjct: 97  IINPVTVKPDTRVKEALDIMAKYKISGVPVVDEERKLIGILTNRDLRFIK---------- 146

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 216
              PE  S       V + ++K N       +  AP    E   L++A  +  + K  +L
Sbjct: 147 ---PEDYS-----KPVSEFMTKEN-------LITAP----EGITLDEAEEIFRKYKIEKL 187

Query: 217 PVVDADGKLVGIITRGNVVR 236
           P+VD +GK+ G+IT  ++V+
Sbjct: 188 PIVDKEGKIKGLITIKDIVK 207

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P65167|IMDH_MYCTU Inosine-5'-monophosphate dehydrogenase OS=Mycobacterium tuberculosis GN=guaB PE=1 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 33/118 (27%)

Query: 120 RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT 179
           RI+G PV+DDD  LVG++++ D                M  EVD +              
Sbjct: 153 RISGLPVVDDDGALVGIITNRD----------------MRFEVDQS-------------- 182

Query: 180 NGKMVGDLMTPAPVV-VRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236
             K V ++MT AP++  +E  +   A  LL   K  +LPVVD  G+L G+IT  + V+
Sbjct: 183 --KQVAEVMTKAPLITAQEGVSASAALGLLRRNKIEKLPVVDGRGRLTGLITVKDFVK 238

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|P65168|IMDH_MYCBO Inosine-5'-monophosphate dehydrogenase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=guaB PE=3 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 33/118 (27%)

Query: 120 RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT 179
           RI+G PV+DDD  LVG++++ D                M  EVD +              
Sbjct: 153 RISGLPVVDDDGALVGIITNRD----------------MRFEVDQS-------------- 182

Query: 180 NGKMVGDLMTPAPVV-VRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236
             K V ++MT AP++  +E  +   A  LL   K  +LPVVD  G+L G+IT  + V+
Sbjct: 183 --KQVAEVMTKAPLITAQEGVSASAALGLLRRNKIEKLPVVDGRGRLTGLITVKDFVK 238

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Mycobacterium bovis (taxid: 1765)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q57647|Y188_METJA Uncharacterized protein MJ0188 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0188 PE=4 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 33/153 (21%)

Query: 89  MTTKEELHVVKPTTTV-DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 147
           M+ K   ++ K   TV  +  V   +++L E     FPV+++  KL+G+VS +D++    
Sbjct: 1   MSVKVSEYMTKKVVTVSKDNTVKDVIKLLKETGHNSFPVVEN-GKLIGIVSVHDIV---- 55

Query: 148 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 207
               G+ DN              +V+ +++K       D++   P       N+ D  R+
Sbjct: 56  ----GKDDNE-------------KVENVMTKRK-----DMVVTTP-----DANIMDVGRI 88

Query: 208 LLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
           +  T + +LPVVD +  LVGII+  +V+R+ ++
Sbjct: 89  MFRTGFSKLPVVDEENNLVGIISNMDVIRSQIE 121

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
225438783	246	PREDICTED: CBS domain-containing protein	0.964	0.979	0.726	4e-93
317106695	236	JHL03K20.5 [Jatropha curcas]	0.92	0.974	0.746	5e-91
255587643	239	conserved hypothetical protein [Ricinus	0.832	0.870	0.789	1e-86
147802944	288	hypothetical protein VITISV_021555 [Viti	0.964	0.836	0.621	2e-86
224081731	208	predicted protein [Populus trichocarpa]	0.82	0.985	0.759	9e-85
449443418	235	PREDICTED: CBS domain-containing protein	0.876	0.931	0.690	7e-83
449525190	235	PREDICTED: CBS domain-containing protein	0.876	0.931	0.690	1e-82
15234564	236	cystathionine beta-synthase domain-conta	0.732	0.775	0.797	5e-80
297802232	236	hypothetical protein ARALYDRAFT_490898 [	0.732	0.775	0.792	1e-79
356541776	228	PREDICTED: CBS domain-containing protein	0.7	0.767	0.805	8e-79

>gi|225438783|ref|XP_002283079.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Vitis vinifera]

 Score =  346 bits (888), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 181/249 (72%), Positives = 204/249 (81%), Gaps = 8/249 (3%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+LP +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILLPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILV 117
            +RRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EA     LEILV
Sbjct: 61  GIRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEA-----LEILV 115

Query: 118 EKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 177
           E RITGFPVIDDDWKLVGLVSDYDLLALDSISG G  D  MFPEVDSTWKTFNE+QKLLS
Sbjct: 116 ENRITGFPVIDDDWKLVGLVSDYDLLALDSISGGGLTDTIMFPEVDSTWKTFNELQKLLS 175

Query: 178 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           KTNGK+VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD+DGKLVGIITRGNVVRA
Sbjct: 176 KTNGKVVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDSDGKLVGIITRGNVVRA 235

Query: 238 ALQIKHATE 246
           ALQIK A E
Sbjct: 236 ALQIKRAVE 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106695|dbj|BAJ53196.1| JHL03K20.5 [Jatropha curcas]

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 186/249 (74%), Positives = 201/249 (80%), Gaps = 19/249 (7%)

Query: 1   MDSIV---LPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVS 57
           MDSI+   L H + + RLRA     TS   SFA QLPCLL SRPG R+  + A     +S
Sbjct: 1   MDSILHQELLH-LPITRLRATA---TSPIVSFAQQLPCLLSSRPGRRLLPLSA-----IS 51

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILV 117
             RRSSA+ ASG   A+S  P SGVYTVGDFMT KE+L VVKPTTTVDEA     L+ LV
Sbjct: 52  HPRRSSAIAASGAFVASS--PKSGVYTVGDFMTRKEDLQVVKPTTTVDEA-----LQTLV 104

Query: 118 EKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 177
           E RITGFPVIDDDWKLVGLVSDYDLLALDSISG GR DNSMFPEVDSTWKTFNEVQKLLS
Sbjct: 105 EHRITGFPVIDDDWKLVGLVSDYDLLALDSISGGGRTDNSMFPEVDSTWKTFNEVQKLLS 164

Query: 178 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           KTNGK+VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD++GKLVGIITRGNVVRA
Sbjct: 165 KTNGKLVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDSEGKLVGIITRGNVVRA 224

Query: 238 ALQIKHATE 246
           AL+IK + E
Sbjct: 225 ALEIKRSIE 233

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587643|ref|XP_002534340.1| conserved hypothetical protein [Ricinus communis] gi|223525462|gb|EEF28042.1| conserved hypothetical protein [Ricinus communis]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 173/219 (78%), Positives = 182/219 (83%), Gaps = 11/219 (5%)

Query: 28  SFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD 87
           SFA QLPCLL S    R    L+     +S  RRSS + A+GTL ANS  P SGVYTVGD
Sbjct: 29  SFAHQLPCLLSSATVSRRLFHLSV----ISWPRRSSTISATGTLMANS--PKSGVYTVGD 82

Query: 88  FMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 147
           FMT KE+L VVKPTTTVDEA     L+ LVE RITGFPVIDDDWKLVGLVSDYDLLALDS
Sbjct: 83  FMTRKEDLCVVKPTTTVDEA-----LQTLVEHRITGFPVIDDDWKLVGLVSDYDLLALDS 137

Query: 148 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 207
           ISG GR DNSMFPEVDSTWKTFNEVQKLLSKTNGK+VGDLMTPAPVVVRETTNLEDAARL
Sbjct: 138 ISGGGRTDNSMFPEVDSTWKTFNEVQKLLSKTNGKLVGDLMTPAPVVVRETTNLEDAARL 197

Query: 208 LLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 246
           LLETKYRRLPVVDA+GKLVGIITRGNVVRAAL+IK   E
Sbjct: 198 LLETKYRRLPVVDAEGKLVGIITRGNVVRAALEIKRDME 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802944|emb|CAN64036.1| hypothetical protein VITISV_021555 [Vitis vinifera]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 181/291 (62%), Positives = 203/291 (69%), Gaps = 50/291 (17%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+ P +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILPPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILV 117
            LRRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EA     LEILV
Sbjct: 61  GLRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEA-----LEILV 115

Query: 118 EKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---------------------------- 149
           E RITGFPVIDDDWKLVGLVSDYDLLALDSIS                            
Sbjct: 116 ENRITGFPVIDDDWKLVGLVSDYDLLALDSISELPQLKHVPEDISGKSLVLHGSLERQMK 175

Query: 150 --------------GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVV 195
                         G G  D  MFPEVDSTWKTFNE+QKLLSKTNGK+VGDLMTPAPVVV
Sbjct: 176 SLFLTAVDVLIFGSGGGLTDTIMFPEVDSTWKTFNELQKLLSKTNGKVVGDLMTPAPVVV 235

Query: 196 RETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 246
           RETTNLEDAARLLLETKYRRLPVVD+DGKLVGIITRGNVVRAALQIK A E
Sbjct: 236 RETTNLEDAARLLLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRAVE 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081731|ref|XP_002306482.1| predicted protein [Populus trichocarpa] gi|222855931|gb|EEE93478.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (816), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 167/220 (75%), Positives = 183/220 (83%), Gaps = 15/220 (6%)

Query: 33  LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFA---SGTLTANSAAPSSGVYTVGDFM 89
           +PCLL S PG ++ S+ +     +S  RRS ++ A   SGTL ANS  P SGVYTVGDFM
Sbjct: 1   MPCLLFSTPGRKLVSLSS-----ISWPRRSPSLIAAASSGTLMANS--PKSGVYTVGDFM 53

Query: 90  TTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 149
           T KE+LHVVKPTTTV+EA     LE LVE+RITGFPVIDDDWKLVGLVSDYDLLALDSIS
Sbjct: 54  TRKEDLHVVKPTTTVNEA-----LETLVERRITGFPVIDDDWKLVGLVSDYDLLALDSIS 108

Query: 150 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 209
           G GR + +MFPEVDSTWKTFNEVQ LL+KTNGK+VGDLMTPAPVVVRETTNLED+ RLLL
Sbjct: 109 GGGRTETNMFPEVDSTWKTFNEVQMLLNKTNGKVVGDLMTPAPVVVRETTNLEDSVRLLL 168

Query: 210 ETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 249
           ETKYRRLPVVDADGKLVGIITRGNVVRAAL IKHA E  A
Sbjct: 169 ETKYRRLPVVDADGKLVGIITRGNVVRAALHIKHAMERKA 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443418|ref|XP_004139474.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  312 bits (800), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 167/242 (69%), Positives = 188/242 (77%), Gaps = 23/242 (9%)

Query: 9   SISVARLRAPPAGRTSGRTSFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           S+S+A  RA          SF++Q     PC    RP   +    A+ +     LR+S++
Sbjct: 10  SLSLAPFRA---------KSFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTS 55

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGF 124
           + ASGTL ANS    +GVY VGDFMT KEELHVVKPTT+VDEA     LEILVEKRITGF
Sbjct: 56  IAASGTLMANSVPSGTGVYIVGDFMTRKEELHVVKPTTSVDEA-----LEILVEKRITGF 110

Query: 125 PVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMV 184
           PVIDD+WKLVG+VSDYDLLALDSISG GR D SMFPEVDS+WKTFNEVQ+LLSKTNGK+V
Sbjct: 111 PVIDDNWKLVGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQRLLSKTNGKVV 170

Query: 185 GDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA 244
           GDLMT AP+VVRE T+LED ARLLL+TKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA
Sbjct: 171 GDLMTTAPLVVREITDLEDVARLLLQTKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA 230

Query: 245 TE 246
            E
Sbjct: 231 EE 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525190|ref|XP_004169601.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 167/242 (69%), Positives = 188/242 (77%), Gaps = 23/242 (9%)

Query: 9   SISVARLRAPPAGRTSGRTSFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           S+S+A  RA          SF++Q     PC    RP   +    A+ +     LR+S++
Sbjct: 10  SLSLAPFRA---------KSFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTS 55

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGF 124
           + ASGTL ANS    +GVY VGDFMT KEELHVVKPTT+VDEA     LEILVEKRITGF
Sbjct: 56  IAASGTLMANSLPSGTGVYIVGDFMTRKEELHVVKPTTSVDEA-----LEILVEKRITGF 110

Query: 125 PVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMV 184
           PVIDD+WKLVG+VSDYDLLALDSISG GR D SMFPEVDS+WKTFNEVQ+LLSKTNGK+V
Sbjct: 111 PVIDDNWKLVGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQRLLSKTNGKVV 170

Query: 185 GDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA 244
           GDLMT AP+VVRE T+LED ARLLL+TKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA
Sbjct: 171 GDLMTTAPLVVREITDLEDVARLLLQTKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA 230

Query: 245 TE 246
            E
Sbjct: 231 EE 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234564|ref|NP_195409.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana] gi|75219197|sp|O23193.2|CBSX1_ARATH RecName: Full=CBS domain-containing protein CBSX1, chloroplastic; AltName: Full=CBS domain-containing protein 2; Short=AtCDCP2; AltName: Full=Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2; Short=AtLEJ2; Flags: Precursor gi|4006881|emb|CAB16799.1| putative protein [Arabidopsis thaliana] gi|7270640|emb|CAB80357.1| putative protein [Arabidopsis thaliana] gi|21537376|gb|AAM61717.1| unknown [Arabidopsis thaliana] gi|28392900|gb|AAO41886.1| unknown protein [Arabidopsis thaliana] gi|28827758|gb|AAO50723.1| unknown protein [Arabidopsis thaliana] gi|332661316|gb|AEE86716.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 150/188 (79%), Positives = 166/188 (88%), Gaps = 5/188 (2%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRI 121
           S++  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEA     LE+LVE RI
Sbjct: 54  SASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEA-----LELLVENRI 108

Query: 122 TGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNG 181
           TGFPVID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNG
Sbjct: 109 TGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNG 168

Query: 182 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241
           K+VGDLMTPAP+VV E TNLEDAA++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQI
Sbjct: 169 KLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI 228

Query: 242 KHATEMGA 249
           K + +  A
Sbjct: 229 KRSGDRNA 236

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802232|ref|XP_002869000.1| hypothetical protein ARALYDRAFT_490898 [Arabidopsis lyrata subsp. lyrata] gi|297314836|gb|EFH45259.1| hypothetical protein ARALYDRAFT_490898 [Arabidopsis lyrata subsp. lyrata]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 149/188 (79%), Positives = 166/188 (88%), Gaps = 5/188 (2%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRI 121
           S++  A  TL  NS++P SGVYTVG+FMT K++LHVVKPTTTVDEA     LE+LVE RI
Sbjct: 54  SASSAAGSTLMKNSSSPRSGVYTVGEFMTKKDDLHVVKPTTTVDEA-----LELLVENRI 108

Query: 122 TGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNG 181
           TGFPVID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNG
Sbjct: 109 TGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNG 168

Query: 182 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241
           K+VGDLMTPAP+VV E TNLEDAA++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQI
Sbjct: 169 KLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI 228

Query: 242 KHATEMGA 249
           K + +  A
Sbjct: 229 KRSGDRNA 236

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541776|ref|XP_003539349.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Glycine max] gi|255632210|gb|ACU16463.1| unknown [Glycine max]

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 145/180 (80%), Positives = 162/180 (90%), Gaps = 5/180 (2%)

Query: 67  ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPV 126
           A+ TLTAN  +P SG+YTVGDFMT KE+LHVVKPTT+VDEA     LEILVE RITGFPV
Sbjct: 51  AANTLTANDVSPRSGLYTVGDFMTKKEDLHVVKPTTSVDEA-----LEILVENRITGFPV 105

Query: 127 IDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGD 186
           IDD+WKLVG+VSDYDLLALDSISG G  DN+MFPEVDSTWKTFNEVQKLLSKTNGK++G+
Sbjct: 106 IDDNWKLVGVVSDYDLLALDSISGHGLKDNNMFPEVDSTWKTFNEVQKLLSKTNGKLIGE 165

Query: 187 LMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 246
           LMT AP+VVRETTNLEDAARLLLETK+RRLPVVDA+G+LVGIITRGNVVRAAL +K A +
Sbjct: 166 LMTTAPMVVRETTNLEDAARLLLETKFRRLPVVDAEGRLVGIITRGNVVRAALHMKQANQ 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2114970	236	LEJ2 "AT4G36910" [Arabidopsis	0.944	1.0	0.670	1.5e-76
TAIR|locus:2124276	238	LEJ1 "AT4G34120" [Arabidopsis	0.784	0.823	0.661	1.2e-65
UNIPROTKB|Q74BN1	144	GSU2010 "CBS domain pair-conta	0.28	0.486	0.402	6.8e-11
TIGR_CMR|GSU_2010	144	GSU_2010 "CBS domain protein"	0.28	0.486	0.402	6.8e-11
UNIPROTKB|Q3AFN9	210	acuB "Acetoin utilization prot	0.228	0.271	0.396	1.7e-09
TIGR_CMR|CHY_0173	210	CHY_0173 "acetoin utilization	0.228	0.271	0.396	1.7e-09
UNIPROTKB|Q74C73	149	GSU1801 "CBS domain pair-conta	0.56	0.939	0.314	1.6e-08
TIGR_CMR|GSU_1801	149	GSU_1801 "CBS domain protein"	0.56	0.939	0.314	1.6e-08
UNIPROTKB|Q3AFS5	271	CHY_0137 "CBS/GGDEF domain pro	0.248	0.228	0.435	3.6e-08
TIGR_CMR|CHY_0137	271	CHY_0137 "CBS/GGDEF domain pro	0.248	0.228	0.435	3.6e-08

TAIR|locus:2114970 LEJ2 "AT4G36910" [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 167/249 (67%), Positives = 191/249 (76%)

Query:     1 MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALR 60
             MD+++    +S   LRA     +S  +S  L LP  L  +P C  F+   +   +     
Sbjct:     1 MDAVLYSVPLSFTPLRA-----SSSPSSPYLLLPRFLSVQP-CHKFTFSRSFPSKSRIPS 54

Query:    61 RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKR 120
              SSA  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEA     LE+LVE R
Sbjct:    55 ASSA--AGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEA-----LELLVENR 107

Query:   121 ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN 180
             ITGFPVID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTN
Sbjct:   108 ITGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTN 167

Query:   181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
             GK+VGDLMTPAP+VV E TNLEDAA++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQ
Sbjct:   168 GKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ 227

Query:   241 IKHATEMGA 249
             IK + +  A
Sbjct:   228 IKRSGDRNA 236

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

TAIR|locus:2124276 LEJ1 "AT4G34120" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 137/207 (66%), Positives = 171/207 (82%)

Query:    46 FSVLATSSDRVSALRRSS----AVFAS-GTLTANSAAPS-SGVYTVGDFMTTKEELHVVK 99
             FS+L  S+ R S+    S    A FA+  ++  N++ P+ +G YTVGDFMT ++ LHVVK
Sbjct:    34 FSLLPLSNRRRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVK 93

Query:   100 PTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 159
             P+T+VD+A     LE+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++F
Sbjct:    94 PSTSVDDA-----LELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLF 148

Query:   160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 219
             P+VDSTWKTFNE+QKL+SKT GK+VGDLMTP+P+VVR++TNLEDAARLLLETK+RRLPVV
Sbjct:   149 PDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVV 208

Query:   220 DADGKLVGIITRGNVVRAALQIKHATE 246
             DADGKL+GI+TRGNVVRAALQIK  TE
Sbjct:   209 DADGKLIGILTRGNVVRAALQIKRETE 235

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|Q74BN1 GSU2010 "CBS domain pair-containing protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 116 (45.9 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query:   165 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGK 224
             TW    EV  +LSKT+   V + M P P  V+  T+L +AA+LL + K   + VVD + +
Sbjct:    66 TW----EVHYILSKTS---VTEAMNPKPYKVKPDTDLTEAAQLLHDRKLNGVLVVDDNDR 118

Query:   225 LVGIITRGNVVRAALQI 241
             LVGI+T  N + A ++I
Sbjct:   119 LVGILTVTNALEALIEI 135

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2010 GSU_2010 "CBS domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 116 (45.9 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query:   165 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGK 224
             TW    EV  +LSKT+   V + M P P  V+  T+L +AA+LL + K   + VVD + +
Sbjct:    66 TW----EVHYILSKTS---VTEAMNPKPYKVKPDTDLTEAAQLLHDRKLNGVLVVDDNDR 118

Query:   225 LVGIITRGNVVRAALQI 241
             LVGI+T  N + A ++I
Sbjct:   119 LVGILTVTNALEALIEI 135

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AFN9 acuB "Acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 102 (41.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query:   184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241
             VGD+M    V       +E+AA+++LE +   LPV+  D +LVGIIT+G++V A  ++
Sbjct:    73 VGDIMQKRVVTAHPLDPVEEAAKMMLENRVGCLPVL-LDDELVGIITQGDIVMAFAEL 129

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TIGR_CMR|CHY_0173 CHY_0173 "acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 102 (41.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query:   184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241
             VGD+M    V       +E+AA+++LE +   LPV+  D +LVGIIT+G++V A  ++
Sbjct:    73 VGDIMQKRVVTAHPLDPVEEAAKMMLENRVGCLPVL-LDDELVGIITQGDIVMAFAEL 129

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

UNIPROTKB|Q74C73 GSU1801 "CBS domain pair-containing protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 132 (51.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 49/156 (31%), Positives = 75/156 (48%)

Query:    84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
             TV D MTT   +   +  TT+ E       E+  + RI   PV+D+   L G+V++ DL+
Sbjct:     3 TVRDIMTTN--VVTARRETTIREL-----AELFSKYRIGSIPVVDEAGNLAGIVTESDLI 55

Query:   144 ALDSISGSGRADNSMFPEV---DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTN 200
               D  S       S+F  V   +S  K   E+QK+     G+  GD+ T     V   T 
Sbjct:    56 EQDK-SLHIPTVISLFDWVIYLESAKKFEREIQKV----TGQTAGDIYTTEVESVTPETP 110

Query:   201 LEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236
             +   A ++   K   LPVV+   KLVGI++R +++R
Sbjct:   111 VSTVADIMANKKLHTLPVVEGK-KLVGIVSRIDLIR 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1801 GSU_1801 "CBS domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 132 (51.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 49/156 (31%), Positives = 75/156 (48%)

Query:    84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
             TV D MTT   +   +  TT+ E       E+  + RI   PV+D+   L G+V++ DL+
Sbjct:     3 TVRDIMTTN--VVTARRETTIREL-----AELFSKYRIGSIPVVDEAGNLAGIVTESDLI 55

Query:   144 ALDSISGSGRADNSMFPEV---DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTN 200
               D  S       S+F  V   +S  K   E+QK+     G+  GD+ T     V   T 
Sbjct:    56 EQDK-SLHIPTVISLFDWVIYLESAKKFEREIQKV----TGQTAGDIYTTEVESVTPETP 110

Query:   201 LEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236
             +   A ++   K   LPVV+   KLVGI++R +++R
Sbjct:   111 VSTVADIMANKKLHTLPVVEGK-KLVGIVSRIDLIR 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AFS5 CHY_0137 "CBS/GGDEF domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 118 (46.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
 Identities = 27/62 (43%), Positives = 35/62 (56%)

Query:   175 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV 234
             L+     ++V D MT  PVV+ E   L DA + +LE    RLPV+D  G L GIITR  +
Sbjct:    54 LIFYPENRLVIDAMTEEPVVIEEKAYLFDAYQKMLENNIERLPVIDESGALTGIITRKVI 113

Query:   235 VR 236
              R
Sbjct:   114 ER 115

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0137 CHY_0137 "CBS/GGDEF domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 118 (46.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
 Identities = 27/62 (43%), Positives = 35/62 (56%)

Query:   175 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV 234
             L+     ++V D MT  PVV+ E   L DA + +LE    RLPV+D  G L GIITR  +
Sbjct:    54 LIFYPENRLVIDAMTEEPVVIEEKAYLFDAYQKMLENNIERLPVIDESGALTGIITRKVI 113

Query:   235 VR 236
              R
Sbjct:   114 ER 115

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23193	CBSX1_ARATH	No assigned EC number	0.7978	0.732	0.7754	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019540001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (213 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023053001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (430 aa)	•						•		0.707
	GSVIVG00036526001	RecName- Full=N-acetyl-gamma-glutamyl-phosphate reductase; EC=1.2.1.38; (398 aa)	•								0.556
	GSVIVG00000640001	RecName- Full=DNA topoisomerase 2; EC=5.99.1.3; (661 aa)	•								0.553
	GSVIVG00025551001	RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa)							•		0.474

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	4e-25
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-24
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	4e-24
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	7e-22
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	1e-20
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	2e-20
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	7e-19
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	1e-18
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	1e-18
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	2e-17
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	6e-17
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	9e-17
pfam00571	57	pfam00571, CBS, CBS domain	2e-16
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	2e-16
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	2e-16
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	1e-15
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	2e-15
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	6e-14
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	7e-14
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	7e-14
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	1e-13
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	2e-13
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	3e-13
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	4e-13
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	5e-13
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	2e-12
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	3e-12
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	5e-12
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	6e-12
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	9e-12
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	3e-11
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	3e-11
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	4e-11
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	4e-11
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	6e-11
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	1e-10
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	1e-10
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	2e-10
pfam00571	57	pfam00571, CBS, CBS domain	3e-10
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	3e-10
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	6e-10
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	8e-10
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	2e-09
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	3e-09
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	3e-09
COG2239	451	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains	3e-09
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	3e-09
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	6e-09
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	1e-08
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	1e-08
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	1e-08
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	2e-08
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	3e-08
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	4e-08
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	5e-08
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	5e-08
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	6e-08
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	7e-08
PRK07807	479	PRK07807, PRK07807, inosine 5-monophosphate dehydr	9e-08
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	1e-07
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-07
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	1e-07
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	2e-07
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	3e-07
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	3e-07
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	4e-07
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	4e-07
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	4e-07
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	4e-07
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	7e-07
PLN02274	505	PLN02274, PLN02274, inosine-5'-monophosphate dehyd	1e-06
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-06
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	2e-06
cd04598	119	cd04598, CBS_pair_GGDEF_assoc, This cd contains tw	2e-06
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	3e-06
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	3e-06
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	3e-06
cd04639	111	cd04639, CBS_pair_26, The CBS domain, named after	3e-06
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	4e-06
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	4e-06
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	5e-06
TIGR01303	475	TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family	5e-06
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	6e-06
cd04597	113	cd04597, CBS_pair_DRTGG_assoc2, This cd contains t	7e-06
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	9e-06
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	9e-06
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	2e-05
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	3e-05
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	3e-05
cd04594	104	cd04594, CBS_pair_EriC_assoc_archaea, This cd cont	3e-05
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	4e-05
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	6e-05
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	7e-05
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	8e-05
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	8e-05
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	9e-05
PRK01862	574	PRK01862, PRK01862, putative voltage-gated ClC-typ	9e-05
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	1e-04
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	1e-04
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	1e-04
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	1e-04
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	2e-04
cd04639	111	cd04639, CBS_pair_26, The CBS domain, named after	2e-04
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	2e-04
cd04614	96	cd04614, CBS_pair_1, The CBS domain, named after h	2e-04
cd04608	124	cd04608, CBS_pair_PALP_assoc, This cd contains two	2e-04
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	2e-04
cd04582	106	cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contain	2e-04
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	3e-04
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	3e-04
cd04591	105	cd04591, CBS_pair_EriC_assoc_euk_bac, This cd cont	3e-04
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	3e-04
cd04617	118	cd04617, CBS_pair_4, The CBS domain, named after h	3e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	4e-04
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	4e-04
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	4e-04
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	5e-04
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	5e-04
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	6e-04
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	9e-04
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	0.001
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	0.001
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	0.001
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	0.001
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	0.001
cd04608	124	cd04608, CBS_pair_PALP_assoc, This cd contains two	0.001
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	0.001
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	0.001
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	0.001
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	0.002
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	0.002
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	0.003
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	0.003
TIGR00400	449	TIGR00400, mgtE, Mg2+ transporter (mgtE)	0.003
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	0.004
cd04614	96	cd04614, CBS_pair_1, The CBS domain, named after h	0.004

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 95.9 bits (239), Expect = 4e-25
 Identities = 48/126 (38%), Positives = 78/126 (61%), Gaps = 10/126 (7%)

Query: 113 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFPEVDSTWKTFNE 171
           +EIL+  +I+G PV+D++ ++VG+VS+ DL+    I  G G             +   ++
Sbjct: 16  VEILLTGKISGVPVVDNEGRVVGIVSEGDLIR--KIYKGKGLFY-VTLLYSV-IFLDESK 71

Query: 172 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 231
           ++KLL K     V ++MT   + V E T +ED AR++ +   +RLPVVD DGKLVGII+R
Sbjct: 72  IKKLLGKK----VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-DGKLVGIISR 126

Query: 232 GNVVRA 237
           G+++R+
Sbjct: 127 GDIIRS 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 93.6 bits (233), Expect = 2e-24
 Identities = 54/145 (37%), Positives = 76/145 (52%), Gaps = 32/145 (22%)

Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG 152
            ++  V P  TV EA     L +++E  I+G PV+DDD +LVG+V++ DLL   +  G  
Sbjct: 1   RDVVTVSPDDTVAEA-----LRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG-- 53

Query: 153 RADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK 212
                                          VGD+MT   V V   T+LE+AA L+LE  
Sbjct: 54  -------------------------LDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHG 88

Query: 213 YRRLPVVDADGKLVGIITRGNVVRA 237
            RRLPVVD +G+LVGI+TR +++RA
Sbjct: 89  IRRLPVVDDEGRLVGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 93.4 bits (233), Expect = 4e-24
 Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 11/141 (7%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
            V P T+V EA       ++++  I+G PV+DDD +LVG+VS+ DLL    + G+ R   
Sbjct: 6   TVSPETSVAEA-----ARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAEL-GTERRRA 59

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 216
                         E+     +++G+ V D+MT   V V E T L + A L+ E + +R+
Sbjct: 60  RWLDL----LAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRV 115

Query: 217 PVVDADGKLVGIITRGNVVRA 237
           PVV   G+LVGI++R +++RA
Sbjct: 116 PVVR-GGRLVGIVSRADLLRA 135

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 86.8 bits (216), Expect = 7e-22
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 31/143 (21%)

Query: 95  LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRA 154
                P  +V EA     +E L++ +I+G PV+DD+  LVG +S+ D L    +  S   
Sbjct: 3   PVTFTPDMSVTEA-----VEKLLKSKISGGPVVDDNGNLVGFLSEQDCLK--QLLES--- 52

Query: 155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR 214
             S   +  +T                  V D+MT   + V    ++ D A+L+L+ K +
Sbjct: 53  --SYHCDGVAT------------------VRDIMTTEVLTVSPDDSIVDLAQLMLKAKPK 92

Query: 215 RLPVVDADGKLVGIITRGNVVRA 237
           R PVVD DGKLVG I+R +V+RA
Sbjct: 93  RYPVVD-DGKLVGQISRRDVLRA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 84.7 bits (210), Expect = 1e-20
 Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 16/148 (10%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
                 T+ +A       +L E +I+G PV+D   KLVG+VS+ D+L L  +     + N
Sbjct: 5   TCNADDTISDA-----ARLLRENKISGAPVLDGG-KLVGIVSESDILKL--LVTHDPSGN 56

Query: 157 ----SMFPEVDSTWKTF---NEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 209
               S    ++   + F    E ++ L+      V D+MT   + +    ++EDAA L++
Sbjct: 57  LWLPSPLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMV 116

Query: 210 ETKYRRLPVVDADGKLVGIITRGNVVRA 237
             K +RLPVV+ DG+LVGI+TRG+++  
Sbjct: 117 RHKIKRLPVVE-DGRLVGIVTRGDIIEG 143

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 83.5 bits (207), Expect = 2e-20
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 23/144 (15%)

Query: 94  ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR 153
            +  +    ++ +A      E++ E RI   PV+++D KLVGL++  DLL         R
Sbjct: 2   PVVTLSEDDSLADAE-----ELMREHRIRHLPVVNEDGKLVGLLTQRDLL---------R 47

Query: 154 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 213
           A  S   +           ++ L+K     V ++M    + V   T L +AA +++E K 
Sbjct: 48  AALSSLSDNG---------EESLTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKI 98

Query: 214 RRLPVVDADGKLVGIITRGNVVRA 237
             LPVVD  G LVGIITR + +R 
Sbjct: 99  GCLPVVDDKGTLVGIITRSDFLRL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 79.2 bits (196), Expect = 7e-19
 Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 24/140 (17%)

Query: 98  VKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157
           + PTTT+ EA     LE++ E +I   PV+D++ +LVG+V+D DL           A  S
Sbjct: 6   ITPTTTIAEA-----LELMREHKIRHLPVVDEEGRLVGIVTDRDLR---------DASPS 51

Query: 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 217
            F               LL K     V ++MT   + V     +E+AA L+ E +   LP
Sbjct: 52  PFTT------LSEHELYLLLKMP---VKEIMTKDVITVHPLDTVEEAALLMREHRIGCLP 102

Query: 218 VVDADGKLVGIITRGNVVRA 237
           VV+ DG+LVGIIT  +++R 
Sbjct: 103 VVE-DGRLVGIITETDLLRT 121

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 78.3 bits (194), Expect = 1e-18
 Identities = 46/134 (34%), Positives = 63/134 (47%), Gaps = 38/134 (28%)

Query: 98  VKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157
           V P  TV EA     LE++ E  I+G PV+DDD KLVG+V++ DL     +         
Sbjct: 7   VSPDATVAEA-----LELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETDLDKP------ 55

Query: 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRE-TTNLEDAARLLLETKYRRL 216
                                     V ++MTP  ++     T+LE+A  LL E K  +L
Sbjct: 56  --------------------------VSEVMTPENLLTTVEGTSLEEALELLHEHKIEKL 89

Query: 217 PVVDADGKLVGIIT 230
           PVVD +GKL G+IT
Sbjct: 90  PVVDDEGKLKGLIT 103

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 78.5 bits (194), Expect = 1e-18
 Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 23/141 (16%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
            V P T++ EA     L+++ E  I   PV+D   KLVG+V+D DL      S S     
Sbjct: 5   TVTPDTSLMEA-----LKLMKENSIRRLPVVDRG-KLVGIVTDRDLKL---ASPSKATTL 55

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 216
            ++           E+  LLSK     V D+MT  P+ V    ++E+AA L+LE K   L
Sbjct: 56  DIW-----------ELYYLLSKIK---VSDIMTRDPITVSPDASVEEAAELMLERKISGL 101

Query: 217 PVVDADGKLVGIITRGNVVRA 237
           PVVD  G+LVGIIT  ++ RA
Sbjct: 102 PVVDDQGRLVGIITESDLFRA 122

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 74.7 bits (184), Expect = 2e-17
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 34/127 (26%)

Query: 111 TALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN 170
             LE+L E +++G PV+    +LVG+++  DLL                       +   
Sbjct: 14  DVLELLKEYKVSGVPVVKKSGELVGIITRKDLL-----------------------RNPE 50

Query: 171 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
           E Q  L          LMT  P  V    ++++AA+L++E   RR+PVVD DGKLVGI+T
Sbjct: 51  EEQLAL----------LMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVT 99

Query: 231 RGNVVRA 237
             ++VRA
Sbjct: 100 VADIVRA 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 73.8 bits (182), Expect = 6e-17
 Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 34/144 (23%)

Query: 94  ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR 153
           ++  V    TVDE      L ++  +R  G+PV+DD  +LVG+V    L  +  +   GR
Sbjct: 2   DVVTVPVDLTVDEV-----LALMFGERHRGYPVVDDG-RLVGIV---TLADIRRVPAEGR 52

Query: 154 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 213
                                        +VGD+MT  PV       L DA + + E   
Sbjct: 53  EAT-------------------------VLVGDVMTRDPVTASPDETLRDALKRMAERDI 87

Query: 214 RRLPVVDADGKLVGIITRGNVVRA 237
            RLPVVD  G+LVGI++R +++RA
Sbjct: 88  GRLPVVDDSGRLVGIVSRSDLLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 78.7 bits (195), Expect = 9e-17
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 38/134 (28%)

Query: 98  VKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157
           V P TT+ EA     L ++    I+G PV+D++ KLVG++++ D+               
Sbjct: 100 VTPDTTLAEA-----LALMARYGISGVPVVDENGKLVGIITNRDVR-------------- 140

Query: 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVV-VRETTNLEDAARLLLETKYRRL 216
            F E D            LS+     V ++MT   +V V E T LE+A  LL E +  +L
Sbjct: 141 -F-ETD------------LSQP----VSEVMTKERLVTVPEGTTLEEALELLHEHRIEKL 182

Query: 217 PVVDADGKLVGIIT 230
           PVVD +G+L G+IT
Sbjct: 183 PVVDDNGRLKGLIT 196

Length = 486

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 71.0 bits (175), Expect = 2e-16
 Identities = 29/54 (53%), Positives = 37/54 (68%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           V D+MTP  V V   T+LE+A  L+ E    RLPVVD DGKLVGI+T  +++RA
Sbjct: 1   VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRA 54

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 72.5 bits (178), Expect = 2e-16
 Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 38/153 (24%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
           V D MT   ++  VKP T+V +A     L ++ E  ++  PV+DD  KLVG++++ D+L 
Sbjct: 1   VKDIMTK--DVITVKPDTSVRDA-----LLLMSENGVSAVPVVDDG-KLVGIITERDILR 52

Query: 145 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 204
             +  G                                 V ++MT   V V   T LE+A
Sbjct: 53  ALAAGGKRLLP----------------------------VKEVMTKPVVTVDPDTPLEEA 84

Query: 205 ARLLLE-TKYRRLPVVDADG-KLVGIITRGNVV 235
             L++E  K RRLPVVD DG KLVGIIT  +++
Sbjct: 85  LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 72.5 bits (179), Expect = 2e-16
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 32/144 (22%)

Query: 94  ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR 153
           ++  V+P  TV EA      +++ EK I    V+DD  +LVG+ S+ D++    ++  G 
Sbjct: 2   DVITVRPDATVAEA-----AKLMAEKNIGAVVVVDDGGRLVGIFSERDIVR--KVALRGA 54

Query: 154 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 213
           +                             V ++MT   + V     +++A  L+ E ++
Sbjct: 55  SALDT------------------------PVSEIMTRNVITVTPDDTVDEAMALMTERRF 90

Query: 214 RRLPVVDADGKLVGIITRGNVVRA 237
           R LPVVD  GKLVGI++ G+VV+A
Sbjct: 91  RHLPVVD-GGKLVGIVSIGDVVKA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 70.8 bits (174), Expect = 1e-15
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 22/144 (15%)

Query: 94  ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR 153
           ++  V P T+++EA       +L   RI   PV+D D +LVG+V+  DLL        GR
Sbjct: 3   DVVTVTPDTSLEEA-----WALLRRHRIKALPVVDGDRRLVGIVTQRDLL--RHARPDGR 55

Query: 154 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 213
                        +T               VGD+M+P  V VR  T + +   LL +  +
Sbjct: 56  RPLRGRLRGRDKPET---------------VGDIMSPPVVTVRPDTPIAELVPLLADGGH 100

Query: 214 RRLPVVDADGKLVGIITRGNVVRA 237
             +PVVD D +LVGI+T+ +++ A
Sbjct: 101 HHVPVVDEDRRLVGIVTQTDLIAA 124

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 22/142 (15%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDSISGSGRAD 155
            V PTT + EA      +I+V       PV+D+   KLVG+++  D+L            
Sbjct: 5   TVPPTTPIMEAA-----KIMVRNGFRRLPVVDEGTGKLVGIITATDILKY---------- 49

Query: 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR 215
                 +    K          +   + V  +MT   + +    +++DAA L+LE +   
Sbjct: 50  ------LGGGEKFNKIKTGNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGG 103

Query: 216 LPVVDADGKLVGIITRGNVVRA 237
           LPVVD DGKLVGI+T  ++++A
Sbjct: 104 LPVVDDDGKLVGIVTERDLLKA 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 66.1 bits (162), Expect = 6e-14
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 28/109 (25%)

Query: 124 FPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM 183
           FPV+DDD +LVG+VS  D+  +            +F            +  L+      +
Sbjct: 27  FPVVDDDGRLVGIVSLDDIREI------------LFDP---------SLYDLV------V 59

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITR 231
             D+MT  PVVV    +LEDA +   ++ Y +LPVVD D GKL+GI++R
Sbjct: 60  ASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSR 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 65.5 bits (160), Expect = 7e-14
 Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 39/142 (27%)

Query: 96  HVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 155
             V P  TV +      ++++ E    GFPV+D+  K+VG+VS  DLL  D         
Sbjct: 5   ITVSPDNTVKDV-----IKLIKETGHDGFPVVDNG-KVVGIVSARDLLGKDPD------- 51

Query: 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR 215
                                     + V ++M+   VV     ++ DAAR++  T   +
Sbjct: 52  --------------------------ETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISK 85

Query: 216 LPVVDADGKLVGIITRGNVVRA 237
           LPVVD +  LVGIIT  +V+R+
Sbjct: 86  LPVVDENNNLVGIITNTDVIRS 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 65.6 bits (161), Expect = 7e-14
 Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 32/141 (22%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
            V P  T+ EA    A  ++ E  +   PV ++D +LVG+V+D D+  + +++  GR  +
Sbjct: 5   TVSPDDTIREA----A-RLMREHDVGALPVCEND-RLVGIVTDRDI-VVRAVA-EGRDPD 56

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 216
           +                          VGD+MT   V V E  ++++AARL+ E + RRL
Sbjct: 57  TTT------------------------VGDVMTRGVVTVTEDDDVDEAARLMREHQVRRL 92

Query: 217 PVVDADGKLVGIITRGNVVRA 237
           PVVD DG+LVGI++ G++ RA
Sbjct: 93  PVVDDDGRLVGIVSLGDLARA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 39/155 (25%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V + M+ K  L  V+P  T+ EA      ++  EK I G PV+DDD K+VG++      
Sbjct: 173 KVKNLMSKK--LITVRPDDTLREA-----AKLFYEKGIRGAPVVDDD-KIVGII------ 218

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLE 202
                                   T +++ K ++  N    V D M    + + E  ++ 
Sbjct: 219 ------------------------TLSDIAKAIANGNLDAKVSDYMRKNVITINEDEDIY 254

Query: 203 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           DA RL+ +    RL V D++GK VGIITR +++  
Sbjct: 255 DAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTR 289

Length = 294

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 64.0 bits (157), Expect = 2e-13
 Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 33/139 (23%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
            V+   TV EA           + I    V+D++ +L+G+VS  DLL          AD 
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL---------LADP 51

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 216
                                      V D+M    + V    + E+ ARL  +     L
Sbjct: 52  D------------------------TPVSDIMDTDVISVSADDDQEEVARLFEKYDLLAL 87

Query: 217 PVVDADGKLVGIITRGNVV 235
           PVVD +G+LVGIIT  +V+
Sbjct: 88  PVVDEEGRLVGIITVDDVI 106

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 20/140 (14%)

Query: 99  KPTTTVDEA-FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157
           KP  TV     V  A  ++++  I+  PVI+   KLVG+V++ D+           A  S
Sbjct: 1   KPVITVSPDDRVSHARRLMLDHDISRLPVIEGG-KLVGIVTEKDI---------ADALRS 50

Query: 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 217
             P V               +     V D+MT   + +   T++ D A L+LE     LP
Sbjct: 51  FRPLVRDR--------HQERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLP 102

Query: 218 VVDADGKLVGIITRGNVVRA 237
           VVD DGKLVGI+TR +++R 
Sbjct: 103 VVD-DGKLVGIVTRTDILRY 121

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 63.7 bits (156), Expect = 4e-13
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 29/139 (20%)

Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG 152
           EE+  V+ T T+  A       +L +   +  PV+D + K VG +S  D+L         
Sbjct: 1   EEVAYVQDTNTLRHAL-----LVLTKHGYSAIPVLDKEGKYVGTISLTDIL--------- 46

Query: 153 RADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK 212
                        WK        L +     V D+M     V+ +  ++E+   LL++  
Sbjct: 47  -------------WKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP 93

Query: 213 YRRLPVVDADGKLVGIITR 231
           +  LPVVD DG  +GIITR
Sbjct: 94  F--LPVVDDDGIFIGIITR 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 67.8 bits (166), Expect = 5e-13
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 36/149 (24%)

Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSIS 149
           E   +  P T   E  V   LE++  K I+G PV++D     KLVG+++  D+  +    
Sbjct: 83  ENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV---- 138

Query: 150 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVV-VRETTNLEDAARLL 208
                                       K  GK V ++MT   V+ V E  +LE+A ++L
Sbjct: 139 ----------------------------KDKGKPVSEVMTREEVITVPEGIDLEEALKVL 170

Query: 209 LETKYRRLPVVDADGKLVGIITRGNVVRA 237
            E +  +LPVVD +G+LVG+IT  ++V+ 
Sbjct: 171 HEHRIEKLPVVDKNGELVGLITMKDIVKR 199

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 18/140 (12%)

Query: 98  VKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157
            +  T   +  +    EI  + +     V++D+ +LVG++SD D L   S          
Sbjct: 1   TRVVTVEMDDRLEEVREIFEKHKFHHLLVVEDN-ELVGVISDRDYLKAIS---------- 49

Query: 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 217
             P + +  +T  ++  L      +    +MT  P+ V   T +++A++LLLE     LP
Sbjct: 50  --PFLGTAGETEKDLATLN-----RRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLP 102

Query: 218 VVDADGKLVGIITRGNVVRA 237
           VVD +G+L+GIIT  ++++ 
Sbjct: 103 VVDENGQLIGIITWKDLLKY 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 59.4 bits (145), Expect = 3e-12
 Identities = 24/48 (50%), Positives = 32/48 (66%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239
            V V   T LE+A  LL E   RRLPVVD +G+LVGI+TR ++++A  
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 60.7 bits (148), Expect = 5e-12
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 32/139 (23%)

Query: 99  KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 158
            P T   +  +  A++++ +K++    V+D D KL+G+VS      L+S+          
Sbjct: 3   NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVS------LESL---------- 46

Query: 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 218
                       +  K       K + D+M      V+   +L D   L+L+   + +PV
Sbjct: 47  -----------EQAYK-----EAKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPV 90

Query: 219 VDADGKLVGIITRGNVVRA 237
           VD DGKLVG+ITR ++V  
Sbjct: 91  VDEDGKLVGLITRSSLVDT 109

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 60.3 bits (147), Expect = 6e-12
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 34/123 (27%)

Query: 116 LVEK-RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK 174
           L ++   + FPV+D+  K+VG+V+  D+            D                   
Sbjct: 19  LNKETGHSRFPVVDEKNKVVGIVTSKDVAG---------KDPDT---------------- 53

Query: 175 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV 234
                    +  +MT  P+ V   T++   A +++      LPVVD + KL+GII+R +V
Sbjct: 54  --------TIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDV 105

Query: 235 VRA 237
           ++A
Sbjct: 106 LKA 108

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 60.2 bits (147), Expect = 9e-12
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 36/139 (25%)

Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKR--ITGFPVIDDDWKLVGLVSDYDLLALDSISG 150
           + L +V P T++ +A     L  +  K   +T   V+D+D +LVG+ +D DL        
Sbjct: 2   DALPLVSPDTSLKDA-----LLEMSRKGLGMTA--VVDEDGRLVGIFTDGDL-------- 46

Query: 151 SGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLE 210
             RA                 ++K L       V D+MT  P  +       +A  L+ E
Sbjct: 47  -RRA-----------------LEKGLDILTLP-VADVMTRNPKTIDPDALAAEALELMEE 87

Query: 211 TKYRRLPVVDADGKLVGII 229
            K   LPVVD +G+ VG++
Sbjct: 88  NKITALPVVDDNGRPVGVL 106

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 32/134 (23%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
            V PTTTV EA      +++ EKR++   V+D + KLVG+ +  D+              
Sbjct: 5   TVSPTTTVQEA-----AKLMREKRVSCVLVMDGN-KLVGIFTSKDI-------------- 44

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 216
                          V + L      +V  +MTP PV     T + +A  L+++ K+R L
Sbjct: 45  -----------ALRVVAQGLD-PESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHL 92

Query: 217 PVVDADGKLVGIIT 230
           PVVD  G++VG++ 
Sbjct: 93  PVVDKSGQVVGLLD 106

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 42/146 (28%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSISGSGR 153
           V+ P  TV +      LEI  +K  +   +  D     KL+G+V+  D+  +   S    
Sbjct: 108 VLSPNHTVADV-----LEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKS---- 158

Query: 154 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLET 211
                                         V ++MTP    VV     +LE+A  +L E+
Sbjct: 159 ----------------------------TPVSEVMTPREKLVVGNTPISLEEANEVLRES 190

Query: 212 KYRRLPVVDADGKLVGIITRGNVVRA 237
           +  +LP+V+ +G+LV +++R ++ + 
Sbjct: 191 RKGKLPIVNDNGELVALVSRSDLKKN 216

Length = 495

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 58.3 bits (141), Expect = 4e-11
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           V D+MT   + V+  T++ DA  L+ E     +PVVD DGKLVGIIT  +++RA
Sbjct: 1   VKDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRA 53

Length = 117

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 59.0 bits (143), Expect = 4e-11
 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 12/146 (8%)

Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDSISGS 151
           E++  V P  ++         + + +  +    V+DD+ K VG+++  DL  A    +  
Sbjct: 1   EDIATVHPEHSLLHVV-----DEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNER 55

Query: 152 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLET 211
           G    S+  +  +  K +  V K +         D+MT   + V    ++ DAA+L+LE 
Sbjct: 56  GLPKKSIKMKRKAGQKRYRYV-KEVPLV----AEDIMTEEIITVSPNDDVVDAAKLMLEA 110

Query: 212 KYRRLPVVDADGKLVGIITRGNVVRA 237
               LPVVD +  +VG+IT+ ++ R 
Sbjct: 111 NISGLPVVD-NDNIVGVITKTDICRE 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 57.6 bits (140), Expect = 6e-11
 Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 46/149 (30%)

Query: 96  HVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVS--DYDLLALDSISG 150
            V+ P  TV        LEI  +K  +G PV +D     KL+G+V+  D D L       
Sbjct: 5   SVLSPDHTV-----ADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDSETP- 58

Query: 151 SGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLL 208
                                            + ++MTP    VV      LE+A  +L
Sbjct: 59  ---------------------------------LSEVMTPREVLVVAPTGITLEEANEIL 85

Query: 209 LETKYRRLPVVDADGKLVGIITRGNVVRA 237
            E+K  +LP+V+ DG+LV ++TR ++ + 
Sbjct: 86  RESKKGKLPIVNDDGELVALVTRSDLKKN 114

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 29/140 (20%)

Query: 99  KPTTTVD-EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157
           K   TVD +  V  A  I+ E  I G  ++ D+ K VG++++ DL+              
Sbjct: 1   KNVITVDPDTTVYEAANIMTENNI-GRLIVVDNEKPVGIITERDLVKK------------ 47

Query: 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 217
                         V     K     VG++M+   + +    +L +AA+L+ +   +RLP
Sbjct: 48  --------------VVSRNLKPREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLP 93

Query: 218 VVDADGKLVGIITRGNVVRA 237
           VVD D +LVGI+T  ++V  
Sbjct: 94  VVD-DDELVGIVTTTDIVMG 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 40/166 (24%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEK-RITGFPVIDDDWKLVGLVSDYDL 142
           TV D MT  E+   ++ T TV++         LVEK   + FPV++   K+VG+V+  D+
Sbjct: 189 TVEDIMTPLEDTSYLRETDTVED------WLDLVEKTGHSRFPVVNRSMKVVGVVTMRDV 242

Query: 143 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 202
           L                    ST  T  +V               MT  P+ VR  T++ 
Sbjct: 243 LDKK----------------PST--TIEKV---------------MTKNPITVRAKTSVA 269

Query: 203 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMG 248
             A++++      LPVVD++  L+GIITR +V+++   I+   ++G
Sbjct: 270 SVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQVG 315

Length = 432

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 45/150 (30%), Positives = 60/150 (40%), Gaps = 37/150 (24%)

Query: 96  HVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 155
             V P TTV EA     LE+     I+G PV +D   L GLV                  
Sbjct: 93  VTVSPDTTVAEA-----LELKERYGISGVPVTEDGKLLGGLVG---------------IR 132

Query: 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR 215
            S   +  S                   V   MT   V   E   LE+A  +L E K  +
Sbjct: 133 TSRDIDFLSK----------------VSVVMTMTEDLVTAPEGITLEEANEILHEHKIEK 176

Query: 216 LPVVDADGKLVGIITRGNVVRAALQIKHAT 245
           LP+VD DG+LVG+ITR ++ +A     +A+
Sbjct: 177 LPIVDDDGELVGLITRKDIEKAR-DYPNAS 205

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 54.1 bits (131), Expect = 3e-10
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 7/59 (11%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           V D MT    +  V P T+++EA     LE++ E  I+  PV+D+D KLVG+V+  DLL
Sbjct: 1   VKDIMTPD--VVTVPPDTSLEEA-----LELMRENGISRLPVVDEDGKLVGIVTLRDLL 52

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 22/141 (15%)

Query: 102 TTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 161
           T   +  +  A ++L E RI   PV+D+  +LVG+V+  DLL          A  S F  
Sbjct: 257 TVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLL--------KHARPSPF-- 306

Query: 162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 221
                      Q+L        V  +MT   V VR  T   +    L +     LPV+DA
Sbjct: 307 -----------QRLRFLRPPT-VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA 354

Query: 222 DGKLVGIITRGNVVRAALQIK 242
            GKLVGI+++ +++ A  +  
Sbjct: 355 AGKLVGIVSQTDLIAALYRNW 375

Length = 382

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 55.1 bits (133), Expect = 6e-10
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 249
            V V     + +A RL+LE     LPVVD DG+LVGI+T  +++RA  +      +  
Sbjct: 3   VVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 40/145 (27%)

Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG 152
            +   + P  +V  A       ++ + RI G PV++D  KLVG+++  D+          
Sbjct: 1   RDPITIDPLDSVGRA-----ARLMEKHRIGGLPVVEDG-KLVGIITSRDVRR-------- 46

Query: 153 RADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK 212
                                        ++V D MT   V +    +L +A RL+ E K
Sbjct: 47  ------AHP-------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKK 81

Query: 213 YRRLPVVDADGKLVGIITRGNVVRA 237
             RLPV+  + KLVGIIT+G +   
Sbjct: 82  IERLPVLR-ERKLVGIITKGTIALE 105

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 18/139 (12%)

Query: 99  KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 158
           +P T   +  V    ++++E   TG PV+    +L+G+++  D++   S+  +   D   
Sbjct: 2   EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVR-TSVEDQQR 60

Query: 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 218
                S       V+K++S           TP   V  + + +  A  L+LE    RLPV
Sbjct: 61  TQTKASP-----TVEKIMS-----------TPVYSVTPDDS-IATAVELMLEHDIGRLPV 103

Query: 219 VDADGKLVGIITRGNVVRA 237
           V+   +LVGI+ R +V++A
Sbjct: 104 VNEKDQLVGIVDRHDVLKA 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 242
            + V++   L D   +LL  K   +PVVD +G++VGI++ G+++R   + K
Sbjct: 3   VITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGK 53

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query: 189 TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238
           T   V V   T++ +AARL+L+     LPVVD DG+LVGI++ G+++R A
Sbjct: 1   TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRA 50

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 42/152 (27%), Positives = 59/152 (38%), Gaps = 35/152 (23%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           T G  MTT  E   +    TVDEA           + I    V+D+  KL+G+VS  DLL
Sbjct: 133 TAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL 190

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                     A+                            + DLM    V V    + E+
Sbjct: 191 ---------TAEPDEL------------------------LKDLMEDDVVSVLADDDQEE 217

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVV 235
            ARL  +     +PVVD D +L+GIIT  +++
Sbjct: 218 VARLFEKYDLLAVPVVDEDNRLIGIITIDDII 249

Length = 451

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 23/139 (16%)

Query: 94  ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL--LALDSISGS 151
           ++  +     V +AF     +++ +  I+G PV+D+  KL+G +S  DL  L L      
Sbjct: 2   KVVSIDSDERVLDAF-----KLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPD--- 53

Query: 152 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLET 211
              D  ++  +          +K       K          +    ++ L++    L+  
Sbjct: 54  ---DLLLYRTI----TFKELSEKFTDSDGVKSRP------LITCTPSSTLKEVITKLVAN 100

Query: 212 KYRRLPVVDADGKLVGIIT 230
           K  R+ VVD +GK +G+IT
Sbjct: 101 KVHRVWVVDEEGKPIGVIT 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 55.6 bits (135), Expect = 6e-09
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241
           V DL    PV V   T+L++A  L+ E   + LPVVD +GKL+G+++  ++ RA + I
Sbjct: 70  VRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDI 127

Length = 546

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238
           P+ V   T+L +A +L+ E   RRLPVVD  GKLVGI+T  ++  A+
Sbjct: 3   PITVTPDTSLMEALKLMKENSIRRLPVVD-RGKLVGIVTDRDLKLAS 48

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 37/146 (25%)

Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDSISGS 151
           + L  + P  T+ EA       +     I G PV+DD  KLVG+V+  D+  A+      
Sbjct: 1   KPLITLNPNATLREA-----ARLFNTHHIHGAPVVDDG-KLVGIVTLSDIAHAIARG--- 51

Query: 152 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLET 211
                                         K V D+MT   + + E   L DA RL+ + 
Sbjct: 52  --------------------------LELAK-VKDVMTKDVITIDEDEQLYDAIRLMNKH 84

Query: 212 KYRRLPVVDADGKLVGIITRGNVVRA 237
              RL V D +G+ VGIITR +++R+
Sbjct: 85  NVGRLIVTDDEGRPVGIITRTDILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 38/142 (26%)

Query: 99  KPTTTVDE-AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157
           +P  T+ E A +  A ++++E+ I   PV+D+D +LVG+V+ +D                
Sbjct: 2   RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWD---------------- 45

Query: 158 MFPEVDSTWKTFNEVQKLLSK---TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR 214
                             +SK    + K V D+MT   +       ++ AAR +      
Sbjct: 46  ------------------ISKAVARDKKSVEDIMTRNVITATPDEPIDVAARKMERHNIS 87

Query: 215 RLPVVDADGKLVGIITRGNVVR 236
            LPVVDA+ +++GIIT  ++ +
Sbjct: 88  ALPVVDAENRVIGIITSEDISK 109

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 190 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           P P V+  TT L +AA  L+E+K+    VVD DG +VGIIT  +++RA
Sbjct: 1   PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRA 48

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 33/141 (23%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
            V P T++ EA      +++ E+ +    V+D D + +G+V++ D++   ++  +G   +
Sbjct: 5   TVDPDTSIREA-----AKLMAEENVGSVVVVDPDERPIGIVTERDIVR--AV-AAGIDLD 56

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 216
                                      V ++MT   V V     + +AA+L+ +   R  
Sbjct: 57  -------------------------TPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHH 91

Query: 217 PVVDADGKLVGIITRGNVVRA 237
            VVD  G+LVG+I+  ++VR 
Sbjct: 92  LVVDKGGELVGVISIRDLVRE 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 38/143 (26%)

Query: 96  HVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 155
             V+P  T++EA      E+L+    T  PV++   ++VG++S  D              
Sbjct: 5   KTVRPEATIEEA-----RELLLRYGHTALPVVEGG-RVVGIISRRD-------------- 44

Query: 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAARLLLETKYR 214
                           V+K L    G   V D M+   V V   T L +   L++E    
Sbjct: 45  ----------------VEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIG 88

Query: 215 RLPVVDADGKLVGIITRGNVVRA 237
           R+PVV+ DG+LVGI+TR +++R 
Sbjct: 89  RVPVVE-DGRLVGIVTRTDLLRT 110

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 35/142 (24%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
            V    T+ E FV   +    ++R   F V+D++ + VG++S  DL A   I  S  A  
Sbjct: 5   TVPAHLTLRE-FVREYVLGSNQRR---FVVVDNEGRYVGIISLADLRA---IPTSQWAQT 57

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYR 214
           +                          V  +MTPA   V V    +L +  +LL E    
Sbjct: 58  T--------------------------VIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLD 91

Query: 215 RLPVVDADGKLVGIITRGNVVR 236
            L VV+  G+++G+IT  +++R
Sbjct: 92  ELAVVEDSGQVIGLITEADLLR 113

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 49.4 bits (119), Expect = 5e-08
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 39/139 (28%)

Query: 96  HVVKPTTTVDEAFVPTALEIL-VEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRA 154
            +V P  ++ +A     L  +          V+D++ +L+G V+D D             
Sbjct: 5   LLVSPDASILDA-----LRKIDKNALRIVL-VVDENGRLLGTVTDGD------------- 45

Query: 155 DNSMFPEVDSTWKTFNEVQKLLSKTNG--KMVGDLMTPAPVVVRETTNLEDAARLLLETK 212
                            +++ L K       V ++M   P+  +  ++ E+   L+ E  
Sbjct: 46  -----------------IRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEILALMRERS 88

Query: 213 YRRLPVVDADGKLVGIITR 231
            R LP++D +G++VG+ T 
Sbjct: 89  IRHLPILDEEGRVVGLATL 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 49.5 bits (119), Expect = 6e-08
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
            V +  TT + +A  L+ E K R LPVVD +G+LVGI+T
Sbjct: 3   VVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVT 41

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 49.1 bits (118), Expect = 7e-08
 Identities = 19/54 (35%), Positives = 36/54 (66%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           VG++M+   + V   T+L DA +L+ E   R L VVD DG+L+G++++ ++++ 
Sbjct: 58  VGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQN 111

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 40/144 (27%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFP-VIDDDWKLVGLVSDYDLLALDSISGSGRAD 155
            + P  TV +A        L+ KR  G   V+D++ + VG+V++ D   +D  +      
Sbjct: 101 TLSPDDTVGDALA------LLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFT------ 148

Query: 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR 215
                                       V D+M+   V +   T+  +A  LL   + + 
Sbjct: 149 ---------------------------QVRDVMSTDLVTLPAGTDPREAFDLLEAARVKL 181

Query: 216 LPVVDADGKLVGIITRGNVVRAAL 239
            PVVDADG+LVG++TR   +RA +
Sbjct: 182 APVVDADGRLVGVLTRTGALRATI 205

Length = 479

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 189 TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238
           +   V V   T+LE+A  LL   + + LPVVD D +LVGI+T+ +++R A
Sbjct: 1   SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHA 50

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)

Query: 193 VVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVR 236
           V V  TT + +AA++++   +RRLPVVD   GKLVGIIT  ++++
Sbjct: 4   VTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILK 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 19/46 (41%), Positives = 32/46 (69%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
            V + E  ++++AA+L++E     LPVVD DG+LVGI+T  ++ +A
Sbjct: 4   VVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKA 49

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 184 VGDLM-TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236
           V  +M T   V   +   LED   ++L+++YR  PVVD DGK+VG+I+R +++ 
Sbjct: 248 VSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301

Length = 546

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 190 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
              V + E  +L DA  L+ E + R LPVV+ DGKLVG++T+ +++RAAL 
Sbjct: 1   SPVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALS 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 7/59 (11%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           V   MT    +  + P  ++ +     A E+++EKR+ G PV+DDD KLVG+V++ DLL
Sbjct: 72  VRSIMTR--NVITITPDDSIKD-----AAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 47.1 bits (113), Expect = 4e-07
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V D MT         P T   +A    ALE++ E +IT  PV+DD+ + VG++  +DLL
Sbjct: 60  PVADVMTRN-------PKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLL 112

Query: 144 A 144
            
Sbjct: 113 R 113

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 27/138 (19%)

Query: 99  KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 158
           KP+  V    +  A+  +        PV+DD  +LVG+++ YD+L+         A  S 
Sbjct: 2   KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLS--------YALES- 52

Query: 159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV 218
                          + L       V ++M    + +    ++  A  L+      RLPV
Sbjct: 53  ---------------EELKDAK---VREVMNSPVITIDANDSIAKARWLMSNNNISRLPV 94

Query: 219 VDADGKLVGIITRGNVVR 236
           +D  GK+ GI+T  +++R
Sbjct: 95  LDDKGKVGGIVTEDDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%)

Query: 168 TFNEVQKLLSKTNGKM----VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 223
           TF EV + +++    +    V  +M P P+V     ++++  RL++E   R LPV+D  G
Sbjct: 40  TFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GG 98

Query: 224 KLVGIITRGNVVRA 237
            L+G+I+  +V +A
Sbjct: 99  TLLGVISFHDVAKA 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           V ++MT   + V    +++  ARL+  T  RR PVV+ + +L+GII+  ++  A
Sbjct: 62  VYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-NNELIGIISLTDIFLA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 30/141 (21%), Positives = 65/141 (46%), Gaps = 25/141 (17%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
             +P T + +      L++LVE+R++  P++D++ K+V + S +D++ L        A  
Sbjct: 5   TARPDTPLIDV-----LDMLVERRVSALPIVDENGKVVDVYSRFDVINL--------AKE 51

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 216
             +  +D T      V + L +   +    + T           L     L+++ +  RL
Sbjct: 52  GAYNNLDLT------VGEALERR-SQDFEGVRT-----CSPDDCLRTIFDLIVKARVHRL 99

Query: 217 PVVDADGKLVGIITRGNVVRA 237
            VVD + ++ GII+  ++++ 
Sbjct: 100 VVVDENKRVEGIISLSDILQF 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 184 VGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           + ++MT     V      +LE+A  +L ++K  +LP+V+ DG+LV ++TR +V R 
Sbjct: 165 LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV 220

Length = 505

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           TVGD MT   ++  V P T+++EA      E+++E  I   PV+DD+ +LVG+V+  D+L
Sbjct: 59  TVGDVMTR--DVVTVSPDTSLEEA-----AELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 231
           P+ V     + +A  L+ E     LPVVD DGKLVGI+T 
Sbjct: 4   PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTN 43

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239971 cd04598, CBS_pair_GGDEF_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 36/143 (25%)

Query: 93  EELHVVKPTTTVDEAFVPTALEILVE-KRITGFPVIDDDWKLVGLVSDYDLLALDSISGS 151
                V P TTV++      LE       ++   V+DD  + VGL+    L+ L  +S  
Sbjct: 1   RPAPTVSPDTTVNDV-----LERFERDPDLSALAVVDDG-RPVGLIMREALMEL--LSTP 52

Query: 152 -GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLE 210
            GRA                    L  K   K V ++M P P++V   T LE+ +RL   
Sbjct: 53  YGRA--------------------LYGK---KPVSEVMDPDPLIVEADTPLEEVSRLATG 89

Query: 211 TKYRRLP---VVDADGKLVGIIT 230
              + L    +V  +G+ +GI T
Sbjct: 90  RDSQNLYDGFIVTEEGRYLGIGT 112

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 119

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 190 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
             P+       + DAARLL E K    PV+D  GKLVGI++  ++++ 
Sbjct: 1   KNPITCNADDTISDAARLLRENKISGAPVLD-GGKLVGIVSESDILKL 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 6/54 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLV 137
            V + MT KE L  V   TT++EA     LE+L E RI   PV+DD+ +L GL+
Sbjct: 148 PVSEVMT-KERLVTVPEGTTLEEA-----LELLHEHRIEKLPVVDDNGRLKGLI 195

Length = 486

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 35/139 (25%)

Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG 152
            ++  V P  TV +A      E + E  ++  PV+DD  ++VG + + DLL         
Sbjct: 1   GDVVSVAPDDTVSQAI-----ERMREYGVSQLPVVDDG-RVVGSIDESDLL--------- 45

Query: 153 RADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK 212
              +++                         V ++M      V     +E+ + LL   +
Sbjct: 46  ---DALIEGKAKFSLP---------------VREVMGEPLPTVDPDAPIEELSELL--DR 85

Query: 213 YRRLPVVDADGKLVGIITR 231
                VVD  GK VGIITR
Sbjct: 86  GNVAVVVDEGGKFVGIITR 104

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240010 cd04639, CBS_pair_26, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 34/137 (24%)

Query: 98  VKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157
           + P  T+D+A      + L+      FPV+D D  LVGL++  DL+   +++  G     
Sbjct: 6   LSPADTLDDA-----ADALLATTQHEFPVVDGDGHLVGLLTRDDLI--RALAEGGPDA-- 56

Query: 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 217
                                    + G +    P V    T L+   RL+ +     +P
Sbjct: 57  ------------------------PVRGVMRRDFPTVSPSAT-LDAVLRLMQQGGAPAVP 91

Query: 218 VVDADGKLVGIITRGNV 234
           VVD  G+LVG++T  NV
Sbjct: 92  VVDGSGRLVGLVTLENV 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 44.4 bits (106), Expect = 4e-06
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 6/54 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLV 137
            V + MT  E L      T+++EA     LE+L E +I   PV+DD+ KL GL+
Sbjct: 55  PVSEVMT-PENLLTTVEGTSLEEA-----LELLHEHKIEKLPVVDDEGKLKGLI 102

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V P TT++EA      E+L E  I   PV+D++ +LVG+V+  D++
Sbjct: 4   TVSPDTTLEEAL-----ELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
           PV      ++ +A   LL++K    PVVD +G LVG ++  + ++  L+
Sbjct: 3   PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLE 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 39/143 (27%), Positives = 54/143 (37%), Gaps = 39/143 (27%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
            + P  TV +A        L+ KR  G  V+  + + VGLV+D DLL +D  +       
Sbjct: 100 TLAPHDTVSDAMA------LIHKRAHGAAVVILEDRPVGLVTDSDLLGVDRFT------- 146

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 216
                                      V D+M+   V     T    A  LL        
Sbjct: 147 --------------------------QVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVA 180

Query: 217 PVVDADGKLVGIITRGNVVRAAL 239
           P+VDADG L GI+TR   +RA +
Sbjct: 181 PLVDADGTLAGILTRTGALRATI 203

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302 [Unknown function, General]. Length = 475

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 43.6 bits (104), Expect = 6e-06
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           V ++MT  P+ +     + +A  L+LE     LPVVD DG+LVG+I+  +++R 
Sbjct: 59  VSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVD-DGRLVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239970 cd04597, CBS_pair_DRTGG_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 21/47 (44%), Positives = 25/47 (53%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
           V D++   PV  R    L +A  L+ E   R LPVVD DG   GIIT
Sbjct: 60  VRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIIT 106

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 154 ADNSMFPEVDSTWKTF---NEVQKLLS----KTNGKMVGDLMTPA--PVVVRETTNLEDA 204
           A+    P + +++ TF     + K LS    K +   V D+MTP      +RET  +ED 
Sbjct: 153 ANEKGLPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDW 212

Query: 205 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
             L+ +T + R PVV+   K+VG++T  +V+  
Sbjct: 213 LDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK 245

Length = 432

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 162 VDSTWKTFNEVQKLLSKTNGKMV--GDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 219
           VD    T   + + L +     +    +M    V V    ++ D   L+ +    +LPV+
Sbjct: 43  VDPRLSTVKRILEALEEAEKTRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVI 102

Query: 220 DADGKLVGIITRGNVVRAALQ 240
           + D K+VG IT  ++VRA L+
Sbjct: 103 EED-KVVGSITENDIVRALLE 122

Length = 187

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 190 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT 245
           P  V V     +++   L+   ++R  PVVD DG+LVGI+T  ++ R   + + AT
Sbjct: 1   PDVVTVPVDLTVDEVLALMFGERHRGYPVVD-DGRLVGIVTLADIRRVPAEGREAT 55

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 6/60 (10%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
           V + MT +EE+  V     ++EA     L++L E RI   PV+D + +LVGL++  D++ 
Sbjct: 145 VSEVMT-REEVITVPEGIDLEEA-----LKVLHEHRIEKLPVVDKNGELVGLITMKDIVK 198

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 30/46 (65%)

Query: 186 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 231
           D+M+   V V   T+++ A +LL E + + LPV+D   +LVGI+T+
Sbjct: 249 DIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQ 294

Length = 382

>gnl|CDD|239967 cd04594, CBS_pair_EriC_assoc_archaea, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 41/140 (29%)

Query: 98  VKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157
           VK    V EA       I++E  +   PV+D + K +G V   D+               
Sbjct: 6   VKDYDKVYEA-----KRIMIENDLLSLPVVDYN-KFLGAVYLKDIENATYGD-------- 51

Query: 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 217
                                     V D +      VR T+  E+A  ++++ K R  P
Sbjct: 52  --------------------------VVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCP 85

Query: 218 VVDADGKLVGIITRGNVVRA 237
           VVD DGK  GI+T  +++ A
Sbjct: 86  VVD-DGKFKGIVTLDSILDA 104

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 104

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.3 bits (98), Expect = 4e-05
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 190 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
              + VR    + +AA+L+ E     + VVD  G+LVGI +  ++VR 
Sbjct: 1   RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRK 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           V D+M+T  ++  V P T + E       E++VE  I G   + +D +LVG+V+  DLL
Sbjct: 58  VKDYMST--DVVTVPPDTPLSEV-----QELMVEHDI-GRVPVVEDGRLVGIVTRTDLL 108

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           VG++ T   V V    +++DAAR + +     L V+D  G L+GI+TR ++   
Sbjct: 151 VGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSR 204

Length = 610

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
           V   MTT E+L        +++       E++++ R   +PV+D+D K+VG++S Y LL+
Sbjct: 248 VSYIMTT-EDLVTFSKDDYLEDV-----KEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301

Length = 546

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 36/138 (26%)

Query: 94  ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDSISGSG 152
           ++  +    T++E      LE++ E   + FPV D D   ++G+V   DLL         
Sbjct: 2   DIVALDADDTLEEI-----LELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRA------- 49

Query: 153 RADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK 212
                                 L        + DL+ P P+ V E+T L+D    + + +
Sbjct: 50  ----------------------LAEGEEDLDLRDLLRP-PLFVPESTPLDDLLEEMRKER 86

Query: 213 YRRLPVVDADGKLVGIIT 230
                VVD  G   G++T
Sbjct: 87  SHMAIVVDEYGGTAGLVT 104

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.6 bits (96), Expect = 9e-05
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 193 VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241
             V++T  L  A  +L +  Y  +PV+D +GK VG I+  +++     +
Sbjct: 4   AYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGL 52

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 186 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT 245
           +L+ PA  VV  T ++ D  R+ LE   + L VVD DG+  G +   ++    L  +  T
Sbjct: 451 ELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTT 510

Query: 246 EMGA 249
           +  A
Sbjct: 511 DKTA 514

Length = 574

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRI 121
              +  S      S         V + MT K  +  V   TT+++        I+ +K I
Sbjct: 57  YVTLLYSVIFLDESKIKKLLGKKVEEIMTKK--VITVDEDTTIEDV-----ARIMSKKNI 109

Query: 122 TGFPVIDDDWKLVGLVSDYDLL 143
              PV+DD  KLVG++S  D++
Sbjct: 110 KRLPVVDDG-KLVGIISRGDII 130

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V   MT  E+L       T++EA      EIL E +I   P++DDD +LVGL++  D+ 
Sbjct: 142 KVSVVMTMTEDLVTAPEGITLEEA-----NEILHEHKIEKLPIVDDDGELVGLITRKDIE 196

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLV--SDYD 141
           V DFMT  E+L      TT+ EA      +I+ + ++   P++D +  LV LV   DYD
Sbjct: 163 VKDFMTPFEKLVTANEGTTLKEAN-----DIIWDHKLNTLPIVDKNGNLVYLVFRKDYD 216

Length = 502

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           V DL  PAPV V  T  + DA  +L E  + +LPVV   GK++G +T   ++ A
Sbjct: 337 VKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSA 390

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 191 APV-VVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           +PV  VR    +E+A  LLL   +  LPVV+  G++VGII+R +V +A
Sbjct: 2   SPVKTVRPEATIEEARELLLRYGHTALPVVE-GGRVVGIISRRDVEKA 48

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240010 cd04639, CBS_pair_26, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 201 LEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238
           L+DAA  LL T     PVVD DG LVG++TR +++RA 
Sbjct: 12  LDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRAL 49

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 29/152 (19%)

Query: 87  DFMTTK-EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 145
           +F+ T+  E+  +   T   +A +  A   + ++ ++   V+DD   L+G+V+  DL   
Sbjct: 145 EFILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLR-- 202

Query: 146 DSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAA 205
                  R                  +    SKT  + V ++MT   + V     L +A 
Sbjct: 203 ------SRV-----------------IADGRSKT--QKVSEVMTSPVISVDRGDFLFEAM 237

Query: 206 RLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
            ++L  + + LPV + DG+ +GI+T  +++R 
Sbjct: 238 LMMLRNRIKHLPVTE-DGQPLGILTLTDILRL 268

Length = 610

>gnl|CDD|239987 cd04614, CBS_pair_1, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238
              V E T L  A R++     + LPV+D DGKL GIIT  +++  +
Sbjct: 3   VPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS 49

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 96

>gnl|CDD|239981 cd04608, CBS_pair_PALP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 190 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236
            APV V  T    +A  +L E  + +LPVVD  GK++G++T GN++ 
Sbjct: 2   KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLS 48

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 33/126 (26%)

Query: 112 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE 171
           AL+++ ++R+    V+D   KLVG+V       ++SI  + +                  
Sbjct: 264 ALQLMRDERVDSLYVVDRQNKLVGVVD------VESIKQARKKAQG-------------- 303

Query: 172 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 231
                       + D++      V   T L +  R +L+   + +PVVD D +LVGI+TR
Sbjct: 304 ------------LQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTR 350

Query: 232 GNVVRA 237
           G++V A
Sbjct: 351 GSLVDA 356

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|239955 cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 39/145 (26%)

Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG 152
            E   V+P   + +A       ++ +  +    V+D D + +G V+  +           
Sbjct: 1   TEPITVRPDDPLSDAL-----GLMDDSDLRALTVVDADGQPLGFVTRREA---------- 45

Query: 153 RADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK 212
                                   ++ +G   GD   P  V V    +L      +    
Sbjct: 46  ------------------------ARASGGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHD 81

Query: 213 YRRLPVVDADGKLVGIITRGNVVRA 237
              LP VD DG+ VG +T+ ++   
Sbjct: 82  MSWLPCVDEDGRYVGEVTQRSIADY 106

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 106

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 19/39 (48%), Positives = 23/39 (58%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
           PV V   T L +A  L+       +PVVD +GKLVGIIT
Sbjct: 97  PVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIIT 135

Length = 486

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 193 VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
           ++V    ++ DA R + +   R + VVD +G+L+G +T G++ RA L+
Sbjct: 5   LLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLK 52

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239964 cd04591, CBS_pair_EriC_assoc_euk_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 188 MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           + P+P  V   T+LE   +L  +   R L VVD +G+LVGIITR ++++A
Sbjct: 57  IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 105

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 34/145 (23%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
           V D M T + L ++ PTT+  +A     L  + EKR+    V D++ +LVG+ +D DL  
Sbjct: 157 VKDLMQTTD-LPLIAPTTSFKDA-----LLEMSEKRLGSAIVCDENNQLVGVFTDGDLR- 209

Query: 145 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 204
                   RA         S                   V D MT  P   +    L +A
Sbjct: 210 --------RALLG----GGSLKSE---------------VRDFMTLGPKTFKLDALLLEA 242

Query: 205 ARLLLETKYRRLPVVDADGKLVGII 229
              L   K   L VVD   K++G++
Sbjct: 243 LEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|239989 cd04617, CBS_pair_4, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 37/145 (25%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
           VV+  T+V +A V     + +E   + F V+D+D  LVG+VS  DLL   SI G      
Sbjct: 5   VVRENTSVYDAIV----TLFLEDVGSLF-VVDEDGDLVGVVSRKDLLKA-SIGG------ 52

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYR 214
                         ++QK+        VG +MT  P         ++ +AA+ L+E +  
Sbjct: 53  -------------ADLQKV-------PVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVD 92

Query: 215 RLPVVDADG---KLVGIITRGNVVR 236
            LPVV+      +++G IT+ N+ +
Sbjct: 93  SLPVVEKVDEGLEVIGRITKTNITK 117

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 118

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
            V + E T L +   ++  +     PVVD DG+LVGI++
Sbjct: 3   VVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVS 41

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            + + MT +E L V     T++EA      EIL E +    P+++DD +LV LV+  DL 
Sbjct: 58  PLSEVMTPREVLVVAPTGITLEEA-----NEILRESKKGKLPIVNDDGELVALVTRSDLK 112

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
            V V   T++ +AA+L+ E     + VVD D + +GI+T  ++VRA
Sbjct: 3   VVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRA 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVE-KRITG 123
           +     +    AA    +  V + MT    +  V P T ++EA     LE++VE  +I  
Sbjct: 44  IITERDILRALAAGGKRLLPVKEVMTKP--VVTVDPDTPLEEA-----LELMVERHKIRR 96

Query: 124 FPVIDDD-WKLVGLVSDYDLL 143
            PV+DDD  KLVG+++  D+L
Sbjct: 97  LPVVDDDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
           P  V   T++  A   +  +  R LPVVD   +LVGIITR +V+  AL+
Sbjct: 3   PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALE 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V + MT +E+L V     +++EA      E+L E R    P+++D+ +LV LVS  DL 
Sbjct: 160 PVSEVMTPREKLVVGNTPISLEEA-----NEVLRESRKGKLPIVNDNGELVALVSRSDLK 214

Query: 144 ALD 146
              
Sbjct: 215 KNR 217

Length = 495

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.4 bits (87), Expect = 9e-04
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 81  GVYTVGDFMTTKEELHVV-----KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVG 135
           G+ T  D +   EE  +       P T   +  V  A +++VE  I   PV+DD  KLVG
Sbjct: 38  GIITRKDLLRNPEEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDG-KLVG 96

Query: 136 LVSDYDLLA 144
           +V+  D++ 
Sbjct: 97  IVTVADIVR 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
               MT       V P T VDEA      ++L+E  I+  PV+D++ +L+G+++  DLL
Sbjct: 69  AHQIMTRD--PITVSPDTPVDEA-----SKLLLENSISCLPVVDENGQLIGIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 242
            + +     L +AARL         PVVD DGKLVGI+T  ++  A  +  
Sbjct: 3   LITLNPNATLREAARLFNTHHIHGAPVVD-DGKLVGIVTLSDIAHAIARGL 52

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 34/143 (23%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
           V+  TT + EA      E L+E +     V+D D  +VG+++  DLL             
Sbjct: 5   VLSATTPLREA-----AEQLIESKHGSALVVDRDGGVVGIITLPDLL------------- 46

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 216
                     +           T       L+T     V     L  A   +     R+L
Sbjct: 47  ----RALEADEAGEPSAVDEVAT-----PPLLT-----VHPDEPLAHALDRMASRGLRQL 92

Query: 217 PVVDAD--GKLVGIITRGNVVRA 237
           PVVD    G+++G++TR NV+ A
Sbjct: 93  PVVDRGNPGQVLGLLTRENVLLA 115

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 193 VVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQ 240
           V +     LE+   L+ E+ + R PV D D   ++G++   +++RA  +
Sbjct: 4   VALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE 52

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 91  TKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 150
           T ++LH+  P T      V  A+EIL E      PV+ +  K++G V+  +LL+      
Sbjct: 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK 395

Query: 151 SGRAD------NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVR 196
           +   D      +  F ++    +  +++ K L K +  +V +   P  VV +
Sbjct: 396 ANPDDAVSKVMSKKFIQIGEG-EKLSDLSKFLEKNSSAIVTEEGKPIGVVTK 446

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|239981 cd04608, CBS_pair_PALP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 23/134 (17%)

Query: 98  VKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 157
           V PT T  EA      EIL EK     PV+D+  K++G+V+  +LL+  S+S SG+   S
Sbjct: 7   VLPTVTCAEAI-----EILKEKGFDQLPVVDESGKILGMVTLGNLLS--SLS-SGKVQPS 58

Query: 158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 217
             P   + +K F  V K  + T GK+   L T A ++V              E       
Sbjct: 59  D-PVSKALYKQFKRVNK--NDTLGKLSRILETDAFLLV------------FFEQISSAAI 103

Query: 218 VVDADGKLVGIITR 231
             +   K +GI+T+
Sbjct: 104 GKEKQEKPIGIVTK 117

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLV 137
            V DFMT       + P T   +A +  ALE L  ++IT   V+DD  K++G++
Sbjct: 221 EVRDFMT-------LGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 184 VGDLMTPAPVV----VRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235
           V D +          + E     DA    L      LPVVD DG+ +G +TR +++
Sbjct: 251 VADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLL 306

Length = 309

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 193 VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMG 248
           + VRE  ++  A  +L E    RLPVVD +GKL GI+TR ++V   ++ +     G
Sbjct: 4   ITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTG 59

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 182 KMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 231
             V D MTP    V   E T L++A  ++ + K   LP+VD +G LV ++ R
Sbjct: 161 TKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFR 212

Length = 502

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 20/130 (15%)

Query: 112 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLL--ALDSISGSGRADNSMFPEVDSTWKTF 169
           A+ +L E  I+  PV+DD+ KL G+V+ +D++   +     +   D S            
Sbjct: 15  AINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRS------------ 62

Query: 170 NEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV--DADGKLVG 227
            E +++L       V D M+   +      ++ DA   +LE     + VV  D D K+VG
Sbjct: 63  GEKERMLD----LPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVG 118

Query: 228 IITRGNVVRA 237
           I+T+ +V+RA
Sbjct: 119 ILTKKDVLRA 128

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
              +  T  ++D   L  ET + R PVVD   K+VGI+T
Sbjct: 4   TGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVT 42

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 193 VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
              R  T L D   +L+E +   LP+VD +GK+V + +R +V+  A +
Sbjct: 4   ATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKE 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|129495 TIGR00400, mgtE, Mg2+ transporter (mgtE)

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 15/52 (28%), Positives = 31/52 (59%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235
           +  +M  +   +    + E+ ARL+ +  +  +PVVD +G+LVGI+T  +++
Sbjct: 197 LSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDII 248

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer [Transport and binding proteins, Cations and iron carrying compounds]. Length = 449

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 75  SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLV 134
           S A +    +V D MT      V+  T T DE  +  A   +    I+  PV+D + +++
Sbjct: 47  SKAVARDKKSVEDIMTRN----VI--TATPDEP-IDVAARKMERHNISALPVVDAENRVI 99

Query: 135 GLVSDYDLLAL 145
           G+++  D+  L
Sbjct: 100 GIITSEDISKL 110

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239987 cd04614, CBS_pair_1, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 44/130 (33%)

Query: 100 PTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 159
             T  +E  +P A+ I+    +   PV+DDD KL G++++ DL+A            S  
Sbjct: 3   VPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIA-----------KSE- 50

Query: 160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 219
                                            V   + T + + A+ +   +  ++P++
Sbjct: 51  --------------------------------VVTATKRTTVSECAQKMKRNRIEQIPII 78

Query: 220 DADGKLVGII 229
           + + KL+G++
Sbjct: 79  NGNDKLIGLL 88

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
COG2524	294	Predicted transcriptional regulator, contains C-te	99.81
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.77
COG4109	432	Predicted transcriptional regulator containing CBS	99.73
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.71
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.71
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.71
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.7
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.7
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.7
COG3620	187	Predicted transcriptional regulator with C-termina	99.7
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.69
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.69
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.69
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.68
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.68
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.68
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.68
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.68
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.68
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.67
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.67
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.66
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.66
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.66
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.66
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.66
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.65
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.65
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.65
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.65
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.64
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.64
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.64
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.64
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.64
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.64
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.64
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.63
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.63
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.63
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.63
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.63
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.63
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.62
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.62
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.62
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.62
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.62
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.62
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.62
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.62
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.62
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.62
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.62
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.61
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.61
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.61
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.61
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.61
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.61
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.61
PRK11573	413	hypothetical protein; Provisional	99.61
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.61
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.61
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.6
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.6
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.6
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.6
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.6
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.59
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.59
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.58
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.58
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.56
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.55
COG2905	610	Predicted signal-transduction protein containing c	99.55
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.55
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.55
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.55
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.54
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.54
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.54
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.53
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.52
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.51
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.5
COG0517	117	FOG: CBS domain [General function prediction only]	99.48
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.44
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	99.44
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.43
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.34
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.32
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.27
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	99.14
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.06
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.05
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.01
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.95
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.9
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.64
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.62
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.56
COG2524	294	Predicted transcriptional regulator, contains C-te	98.52
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.48
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.45
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.44
COG3620	187	Predicted transcriptional regulator with C-termina	98.42
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.38
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.37
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.33
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.33
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.3
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.29
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.26
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.24
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.23
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.23
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.23
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.22
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.21
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.21
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.2
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.19
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.19
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.19
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.18
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.18
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.18
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.16
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.16
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.16
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.14
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.13
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.13
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.12
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.12
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.12
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.12
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.11
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.11
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.1
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.1
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.1
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.1
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.08
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.08
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.08
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.08
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.07
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.07
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.06
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.05
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.05
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.05
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.03
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.03
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.02
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.0
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.99
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.97
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.96
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.96
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.96
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.95
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.95
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.93
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.93
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.93
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.9
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.89
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.89
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.88
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	97.88
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.88
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	97.88
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.87
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.86
COG0517	117	FOG: CBS domain [General function prediction only]	97.84
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	97.82
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.82
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.81
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.81
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.81
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.8
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.79
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.76
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	97.75
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	97.73
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.7
PRK11573	413	hypothetical protein; Provisional	97.68
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.65
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.6
COG2905	610	Predicted signal-transduction protein containing c	97.59
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.34
COG4109	432	Predicted transcriptional regulator containing CBS	97.33
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	97.25
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	96.89
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	96.87
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.43
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	95.07
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	94.89
KOG2118	498	consensus Predicted membrane protein, contains two	94.74
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	93.99
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	92.85
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	92.52
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	90.91
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	89.48
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	85.33
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	83.78

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.81  E-value=1.8e-19  Score=150.40  Aligned_cols=125  Identities=34%  Similarity=0.487  Sum_probs=113.9

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      .....+++++|.+  +++++.+++|+.++     .+.|.++++.+.||+|++ +++|++|..|+..+.+..         
T Consensus       168 siPk~~V~~~~s~--~~i~v~~d~tl~ea-----ak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g---------  230 (294)
T COG2524         168 SIPKEKVKNLMSK--KLITVRPDDTLREA-----AKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANG---------  230 (294)
T ss_pred             ecCcchhhhhccC--CceEecCCccHHHH-----HHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcC---------
Confidence            4456689999999  99999999999999     999999999999999965 999999999999764322         


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                          .....++++|.++++++++|+.+.+|+++|..+++.++.|+|.+|+++|+||+.||+..+
T Consensus       231 --------------------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i  290 (294)
T COG2524         231 --------------------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI  290 (294)
T ss_pred             --------------------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence                                246789999999999999999999999999999999999999999999999999999987


Q ss_pred             Hh
Q 025613          239 LQ  240 (250)
Q Consensus       239 ~~  240 (250)
                      ..
T Consensus       291 a~  292 (294)
T COG2524         291 AG  292 (294)
T ss_pred             hc
Confidence            64

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.77  E-value=2.7e-18  Score=146.02  Aligned_cols=199  Identities=25%  Similarity=0.313  Sum_probs=145.4

Q ss_pred             ccCCCCCCCCCCccccc--ccceecCCCChhHHHHHhhhcCCeee-eeCCCcccccccccccCCCCCCCCCceecccccc
Q 025613           15 LRAPPAGRTSGRTSFAL--QLPCLLLSRPGCRVFSVLATSSDRVS-ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT   91 (250)
Q Consensus        15 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~   91 (250)
                      =.||-+|..++-+.-.+  -.|.........++-+.+.++...+- .+.+...+-.+..+..  ..+....++..++|.+
T Consensus       176 r~YPh~~~~p~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa--~~R~~~~LtcadIMSr  253 (382)
T COG3448         176 RTYPHHWLSPPANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRETELQA--LRRRMGELTCADIMSR  253 (382)
T ss_pred             CCCCCccCCCcccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHH--HHHHhccccHHHhcCc
Confidence            34555455554332222  23344445566667777776655222 2222211111111111  1456678899999999


Q ss_pred             CCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHH
Q 025613           92 KEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE  171 (250)
Q Consensus        92 ~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (250)
                        +++++..++++.+|     .+.|.+++++.+||+|++.+++|+|+..||....                  .|.-   
T Consensus       254 --dVvtv~~~ts~dhA-----~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a------------------~~~p---  305 (382)
T COG3448         254 --DVVTVSTDTSIDHA-----RKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHA------------------RPSP---  305 (382)
T ss_pred             --cceecCCcCChHHH-----HHHHHHcCcccccccccccceeeeeeHHHHhhcc------------------Ccch---
Confidence              99999999999999     9999999999999999999999999999999631                  1211   


Q ss_pred             HHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhhh
Q 025613          172 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA  244 (250)
Q Consensus       172 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~~  244 (250)
                      ++++ .......++.+|+++..|+.++++..+++-.|.+.+.+++||+|++|+++||||..|++.++...+..
T Consensus       306 ~qrl-r~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~~  377 (382)
T COG3448         306 FQRL-RFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWSQ  377 (382)
T ss_pred             HHHh-hccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHHH
Confidence            1222 13456779999999999999999999999999999999999999999999999999999998876644

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.73  E-value=1.8e-17  Score=143.98  Aligned_cols=127  Identities=31%  Similarity=0.533  Sum_probs=118.0

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      .-++|+|+|+|.++...+.+++++++.     .++..++++++|||+|...+++|+|+.+|+..                
T Consensus       186 dI~~Vedi~~P~~~~~yL~~~d~v~d~-----~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~----------------  244 (432)
T COG4109         186 DIITVEDIMTPLEDTSYLRETDTVEDW-----LDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLD----------------  244 (432)
T ss_pred             heeeHHHhccccccceeccccccHHHH-----HHHHHHcCCCccceecccceEEEEEEehhhhc----------------
Confidence            456899999988899999999999999     99999999999999999999999999999985                


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                       ..++.++..+|+++|+++.+.+++..+.++|...++..+||++++.+++|+||+.|+++.+..
T Consensus       245 -----------------~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~  307 (432)
T COG4109         245 -----------------KKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             -----------------CCCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence                             356789999999999999999999999999999999999999999999999999999999877


Q ss_pred             hhhhh
Q 025613          241 IKHAT  245 (250)
Q Consensus       241 ~~~~~  245 (250)
                      .+.+.
T Consensus       308 ~q~qp  312 (432)
T COG4109         308 IQRQP  312 (432)
T ss_pred             hccCC
Confidence            76554

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.71  E-value=1.5e-16  Score=119.76  Aligned_cols=111  Identities=24%  Similarity=0.337  Sum_probs=96.7

Q ss_pred             eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHH
Q 025613           95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK  174 (250)
Q Consensus        95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (250)
                      +.++.+++++.++     ++.|.++++..+||+|++|+++|+|+..|+.+.....+                        
T Consensus         3 ~~~v~~~~~l~~a-----~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~------------------------   53 (114)
T cd04619           3 LAKIDVNATLQRA-----AKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCG------------------------   53 (114)
T ss_pred             eEEECCCCcHHHH-----HHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcC------------------------
Confidence            5778999999999     99999999999999999999999999999986532100                        


Q ss_pred             HHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          175 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       175 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                        ......++.++|.++++++.+++++.+|++.|.+++..++||+|++|+++|+||++|+++
T Consensus        54 --~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          54 --GPGCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             --CCcccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence              012346788999999999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.71  E-value=1.7e-16  Score=119.05  Aligned_cols=109  Identities=26%  Similarity=0.350  Sum_probs=95.1

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.+++...+||+|++|+++|+|+..|+.+...                          
T Consensus         2 ~~~~v~~~~~l~~a-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~--------------------------   50 (111)
T cd04603           2 QTVSVNCENPLREA-----IKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP--------------------------   50 (111)
T ss_pred             ceEEeCCCCcHHHH-----HHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc--------------------------
Confidence            36788999999999     99999889999999998899999999999986310                          


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                         ......++.++|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||..|+++
T Consensus        51 ---~~~~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          51 ---NDYETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             ---ccccccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence               011134688899888999999999999999999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.71  E-value=1e-16  Score=140.57  Aligned_cols=131  Identities=21%  Similarity=0.360  Sum_probs=113.4

Q ss_pred             CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCC
Q 025613           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRAD  155 (250)
Q Consensus        77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~  155 (250)
                      ...+...+++++|+++.++.++++++++.++     ++.+.+++++.+||++++ ++++|+|+.+||+.....       
T Consensus        61 vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~-----~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~-------  128 (292)
T PRK15094         61 VMDIADQRVRDIMIPRSQMITLKRNQTLDEC-----LDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS-------  128 (292)
T ss_pred             HhccCCCEEeEEccchHHEEEEeCCCCHHHH-----HHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc-------
Confidence            3467788999999998789999999999999     999999999999999876 789999999999864210       


Q ss_pred             CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613          156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  235 (250)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil  235 (250)
                                            ......+.++|.+ ++++++++++.++++.|++.+.+.+||+|++|.++|+||.+||+
T Consensus       129 ----------------------~~~~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIl  185 (292)
T PRK15094        129 ----------------------DAEAFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDIL  185 (292)
T ss_pred             ----------------------cCCcCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHH
Confidence                                  0112347788876 66899999999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 025613          236 RAALQIK  242 (250)
Q Consensus       236 ~~l~~~~  242 (250)
                      +.+....
T Consensus       186 e~ivGei  192 (292)
T PRK15094        186 ELIVGEI  192 (292)
T ss_pred             HHHhCCC
Confidence            9988654

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.70  E-value=1e-16  Score=142.46  Aligned_cols=121  Identities=25%  Similarity=0.286  Sum_probs=107.6

Q ss_pred             CceeccccccCCc--eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCC
Q 025613           82 VYTVGDFMTTKEE--LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  159 (250)
Q Consensus        82 ~~~v~~~m~~~~~--~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~  159 (250)
                      ..+|+++|++  +  ++++++++++.++     .+.|.+++...+||+|++|+++|+|+..|+.+++...          
T Consensus       196 ~~~V~~im~~--~~~~~~v~~~~sv~~a-----~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~----------  258 (321)
T PRK11543        196 LNKVHHLMRR--DDAIPQVALTASVMDA-----MLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG----------  258 (321)
T ss_pred             HhHHHHHhcc--CCCCcEeCCCCCHHHH-----HHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC----------
Confidence            6789999998  6  9999999999999     9999888889999999999999999999998653210          


Q ss_pred             CCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                                        .....++.++|.++++++.+++++.+|++.|.+.+...+||||++|+++|+||+.|++++
T Consensus       259 ------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        259 ------------------GALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             ------------------CCcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence                              112456889999999999999999999999999999999999988999999999999864

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.70  E-value=1.9e-16  Score=144.96  Aligned_cols=128  Identities=21%  Similarity=0.261  Sum_probs=113.0

Q ss_pred             CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCC
Q 025613           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRAD  155 (250)
Q Consensus        77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~  155 (250)
                      .-.+...+++|+|+++.++.+++.+++++++     ++.+.+++++++||++++ ++++|+|+.+|++....        
T Consensus       185 vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~-----~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~--------  251 (408)
T TIGR03520       185 IVSFGNTDTKQVMRPRLDIFALDIETSFSEI-----IPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN--------  251 (408)
T ss_pred             HhccCCCEeeeeCCchHhEEEEECCCCHHHH-----HHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc--------
Confidence            4577888999999998899999999999999     999999999999999865 68999999999985311        


Q ss_pred             CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613          156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  235 (250)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil  235 (250)
                                             ....++.++|.+ +.+|++++++.++++.|++.+.+.++|+|++|.++|+||.+||+
T Consensus       252 -----------------------~~~~~l~~~~~~-~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDil  307 (408)
T TIGR03520       252 -----------------------KKNFDWQSLLRE-PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDII  307 (408)
T ss_pred             -----------------------cCCCCHHHHcCC-CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHH
Confidence                                   112456778865 88999999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 025613          236 RAALQI  241 (250)
Q Consensus       236 ~~l~~~  241 (250)
                      +.+...
T Consensus       308 eeivge  313 (408)
T TIGR03520       308 EEIVGD  313 (408)
T ss_pred             HHHhCC
Confidence            998644

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.70  E-value=1.6e-16  Score=141.65  Aligned_cols=124  Identities=26%  Similarity=0.352  Sum_probs=106.7

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      ..++++++|.+.++++++++++++.++     ++.|.+++...+||+|++|+++|+||..|+.+......          
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a-----~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----------  264 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDA-----LLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----------  264 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHH-----HHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----------
Confidence            677899999853368999999999999     99999888888888898999999999999986422110          


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                                       .....++.++|.++++++.+++++.+|++.|.+++++++||++ +|+++|+||+.|++++
T Consensus       265 -----------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        265 -----------------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             -----------------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence                             1124679999999999999999999999999999999999998 6899999999999875

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.70  E-value=8.1e-17  Score=125.54  Aligned_cols=123  Identities=24%  Similarity=0.365  Sum_probs=106.9

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      ..+++..+|+.  +++.+.+++++.++     +++|++++++++||+++ |+++|-||.+++.+++...+          
T Consensus        63 ~~ita~~iM~s--pvv~v~pdDsi~~v-----v~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~----------  124 (187)
T COG3620          63 TRITAKTIMHS--PVVSVSPDDSISDV-----VNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM----------  124 (187)
T ss_pred             ceEeHhhhccC--CeeEECchhhHHHH-----HHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc----------
Confidence            45688999999  99999999999999     99999999999999996 89999999999998642211          


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                      +...+..+.++|..++++|++++++..+.+++..++.  +.|++ +|+++||||+.||++.+..
T Consensus       125 ----------------e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e-~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         125 ----------------ESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE-NGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             ----------------cchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe-CCceEEEEeHHHHHHHHhc
Confidence                            1334678999999999999999999999999976654  77885 8999999999999998765

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.69  E-value=4.8e-16  Score=144.32  Aligned_cols=123  Identities=28%  Similarity=0.411  Sum_probs=110.3

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      .+..++++++|..  ++.++++++++.++     ++.|.++++.++||+|++|+++|+|+.+||...             
T Consensus        85 ~l~~VKv~~iMi~--~pvtv~~d~tv~eA-----~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~-------------  144 (479)
T PRK07807         85 VVAWVKSRDLVFD--TPVTLSPDDTVGDA-----LALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV-------------  144 (479)
T ss_pred             HHhhccccccccc--CCeEECCCCCHHHH-----HHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC-------------
Confidence            4456678899988  89999999999999     999999999999999999999999999999642             


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                          ....++.++|+++++++++++++.+|++.|.+++.+.+||+|++|+++|+||++||++..
T Consensus       145 --------------------~~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~  204 (479)
T PRK07807        145 --------------------DRFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRAT  204 (479)
T ss_pred             --------------------ccCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHh
Confidence                                123569999999999999999999999999999999999999889999999999999876


Q ss_pred             Hhh
Q 025613          239 LQI  241 (250)
Q Consensus       239 ~~~  241 (250)
                      ...
T Consensus       205 ~~~  207 (479)
T PRK07807        205 IYT  207 (479)
T ss_pred             hCC
Confidence            543

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=4.1e-16  Score=117.17  Aligned_cols=111  Identities=26%  Similarity=0.381  Sum_probs=96.0

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV  172 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (250)
                      +++++++++++.++     ++.|.++++..+||+|++ |+++|+|+..|+++++...+.                     
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~---------------------   55 (114)
T cd04630           2 NVVTIDGLATVAEA-----LQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR---------------------   55 (114)
T ss_pred             CcEEECCCCcHHHH-----HHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC---------------------
Confidence            57889999999999     999999999999999987 899999999999875321110                     


Q ss_pred             HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                           .....++.++|.++++++++++++.++++.|.+.+...+||+|+ |+++|+||+.|+++
T Consensus        56 -----~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          56 -----DPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             -----CCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence                 11235788999888999999999999999999999999999996 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.69  E-value=2.9e-16  Score=115.75  Aligned_cols=94  Identities=32%  Similarity=0.468  Sum_probs=86.0

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV  172 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (250)
                      .+.++++++++.++     .+.|.+++++++||+|++ |+++|+||..|+.+..                          
T Consensus         2 ~~~~v~~~~~l~~a-----~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~--------------------------   50 (98)
T cd04618           2 KLVVFDTKLPVKKA-----FNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL--------------------------   50 (98)
T ss_pred             eEEEECCCCcHHHH-----HHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe--------------------------
Confidence            47899999999999     999999999999999975 8999999999998530                          


Q ss_pred             HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHH
Q 025613          173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVR  236 (250)
Q Consensus       173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~  236 (250)
                                      .  +.++.+++++.+|++.|.+++.+++||+|++ |+++|+||.+|++.
T Consensus        51 ----------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          51 ----------------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             ----------------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence                            0  7889999999999999999999999999987 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.68  E-value=5.6e-16  Score=116.51  Aligned_cols=112  Identities=31%  Similarity=0.412  Sum_probs=96.3

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      +++++++++++.++     ++.|.+.++..+||+|++|+++|+|+..||.+......                       
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~-----------------------   53 (115)
T cd04593           2 PPPVLSATTPLREA-----AEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE-----------------------   53 (115)
T ss_pred             CCcEeCCCCCHHHH-----HHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc-----------------------
Confidence            56788999999999     99999999999999998899999999999987532110                       


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRA  237 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~--g~~vGiIt~~Dil~~  237 (250)
                          .....++.++|.++++++.+++++.++++.|.+++..++||+|++  |+++|+||+.|++++
T Consensus        54 ----~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          54 ----AGEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             ----ccccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence                112344788899999999999999999999999999999999976  799999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=6.9e-16  Score=117.07  Aligned_cols=119  Identities=21%  Similarity=0.352  Sum_probs=93.5

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.+++++.+||+|++|+++|+++.+||..+......              +....+..
T Consensus         2 ~~~~i~~~~~l~~a-----~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~--------------~~~~~~~~   62 (120)
T cd04641           2 NIATARPDTPLIDV-----LDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAY--------------NNLDLTVG   62 (120)
T ss_pred             CcEEEcCCCCHHHH-----HHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcc--------------ccccCCHH
Confidence            57889999999999     999999999999999989999999999999975321100              00000000


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                      .      .....+.|..++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|++++
T Consensus        63 ~------~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~  120 (120)
T cd04641          63 E------ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF  120 (120)
T ss_pred             H------HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence            0      011234566678899999999999999999999999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.68  E-value=5.8e-16  Score=117.25  Aligned_cols=111  Identities=30%  Similarity=0.373  Sum_probs=94.7

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.+++...+||+|++|+++|+|+..|+.+......                       
T Consensus         2 ~~~~~~~~~~~~~a-----~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~-----------------------   53 (118)
T cd04617           2 PPVVVRENTSVYDA-----IVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA-----------------------   53 (118)
T ss_pred             CCEEECCCCCHHHH-----HHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC-----------------------
Confidence            46789999999999     99999899999999998899999999999987532110                       


Q ss_pred             HHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD---GKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~---g~~vGiIt~~Dil~  236 (250)
                          .....++.++|.+  +++++++++++.++++.|.+++.+.+||+|++   |+++|+||+.|+++
T Consensus        54 ----~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          54 ----DLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             ----CccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence                1124567788874  68899999999999999999999999999876   69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.68  E-value=5.8e-16  Score=117.72  Aligned_cols=121  Identities=34%  Similarity=0.597  Sum_probs=98.7

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++++++++.++.++     .+.|.++++.++||++++|+++|+|+..||...+......           +.+..+    
T Consensus         3 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~-----------~~~~~~----   62 (124)
T cd04600           3 DVVTVTPDTSLEEA-----WALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR-----------PLRGRL----   62 (124)
T ss_pred             CcEEeCCCCCHHHH-----HHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-----------hhhhhh----
Confidence            67889999999999     9999999999999999889999999999998653211100           000000    


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                      .  ......++.++|.++++++.+++++.++++.|.+.+.+.+||+|++|+++|+||+.|+++
T Consensus        63 ~--~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          63 R--GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             h--cccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            0  012345788999999999999999999999999999999999998899999999999986

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.68  E-value=1e-15  Score=141.92  Aligned_cols=188  Identities=30%  Similarity=0.440  Sum_probs=135.0

Q ss_pred             CeeeeccccccccccCCCCCCCCCCcccccccceecCCC---ChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCC
Q 025613            2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSR---PGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA   77 (250)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |-+++|.-+.+.--...+..++  +.++.+.+|++.+..   +-.+....|.+... -+....-++....+.        
T Consensus         6 dv~l~p~~~~~~~~~~~~~~~~--~~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~--------   75 (450)
T TIGR01302         6 DVLLLPGFIDVEPDDVDLSTRI--TRNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQ--------   75 (450)
T ss_pred             ceEecccccccCcccccccccc--ccccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHH--------
Confidence            5567777555433222222222  236778888887633   33344455554433 222211111111111        


Q ss_pred             CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC---CcEEEEEehHHHHhhhhccCCCCC
Q 025613           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRA  154 (250)
Q Consensus        78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~---g~~~GiVt~~dL~~~~~~~~~~~~  154 (250)
                       .-...+.++.|..  ++.++++++++.++     ++.|.+++++++||+|++   ++++|+|+.+||+..         
T Consensus        76 -V~~Vk~~~~~~~~--~~vtl~~~~tv~ea-----l~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~---------  138 (450)
T TIGR01302        76 -VKRVKRAENGIIS--DPVTISPETTVADV-----LELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV---------  138 (450)
T ss_pred             -HhhhccccCceec--CceEeCCCCCHHHH-----HHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh---------
Confidence             1123356777887  89999999999999     999999999999999987   799999999999743         


Q ss_pred             CCCCCCCcccchhchHHHHHHHhccCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHH
Q 025613          155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGN  233 (250)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~D  233 (250)
                                             .....++.++|+ .+++++++++++.++++.|.+++.+.+||+|++|+++|+||++|
T Consensus       139 -----------------------~~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~D  195 (450)
T TIGR01302       139 -----------------------KDKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKD  195 (450)
T ss_pred             -----------------------hcCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHH
Confidence                                   112457899998 48999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 025613          234 VVRAAL  239 (250)
Q Consensus       234 il~~l~  239 (250)
                      |++.+.
T Consensus       196 Il~~~~  201 (450)
T TIGR01302       196 IVKRRK  201 (450)
T ss_pred             hhhccc
Confidence            999864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.68  E-value=6e-16  Score=115.15  Aligned_cols=105  Identities=30%  Similarity=0.495  Sum_probs=95.3

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++.+++++.++     ++.|.+++...+||+|++|+++|+|+..|+...                            
T Consensus         3 ~~~~~~~~~~~~~a-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~----------------------------   49 (108)
T cd04596           3 DTGYLTTTDTVKDW-----HELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK----------------------------   49 (108)
T ss_pred             ccEEeCCCCCHHHH-----HHHHHHcCCCceeEECCCCeEEEEecHHHHhcc----------------------------
Confidence            67889999999999     999999888899999988999999999999842                            


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                           ....++.++|..++.++++++++.++++.|.+.+...+||++++|+++|+||..|+++
T Consensus        50 -----~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          50 -----DPDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             -----cccccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence                 1235688899888999999999999999999999999999998899999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.67  E-value=4e-16  Score=148.91  Aligned_cols=131  Identities=21%  Similarity=0.279  Sum_probs=113.2

Q ss_pred             CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCC
Q 025613           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN  156 (250)
Q Consensus        77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~  156 (250)
                      ...+..++++|+|++  +..++++++++.++     .+.+.+++.+.+||+|++|+++|+|+.+|+.+.+....      
T Consensus       441 ~~~L~~~~V~dim~~--~~~~v~~~~tl~ea-----~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~------  507 (574)
T PRK01862        441 RERLRTTQMRELIQP--AQTVVPPTASVADM-----TRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR------  507 (574)
T ss_pred             hhHHhhCcHHHHhcC--CCceeCCCCCHHHH-----HHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc------
Confidence            446677899999998  78899999999999     99999999999999999999999999999986421100      


Q ss_pred             CCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHH
Q 025613          157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNV  234 (250)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~--g~~vGiIt~~Di  234 (250)
                                           .....++.++|+++++++++++++.++++.|.+++.+.+||+|++  ++++|+||++|+
T Consensus       508 ---------------------~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DI  566 (574)
T PRK01862        508 ---------------------DTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSL  566 (574)
T ss_pred             ---------------------ccccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHH
Confidence                                 112357889999999999999999999999999999999999876  489999999999


Q ss_pred             HHHHHhh
Q 025613          235 VRAALQI  241 (250)
Q Consensus       235 l~~l~~~  241 (250)
                      ++++.+.
T Consensus       567 l~~l~~~  573 (574)
T PRK01862        567 LDAYRRM  573 (574)
T ss_pred             HHHHHhh
Confidence            9998764

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=1.3e-15  Score=113.51  Aligned_cols=111  Identities=36%  Similarity=0.630  Sum_probs=95.6

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++..++++.++.++     ++.|.+.++..+||+|++|+++|+++..|+.+++...+.                      
T Consensus         2 ~~~~i~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~----------------------   54 (113)
T cd04623           2 DVITVRPDATVAEA-----AKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA----------------------   54 (113)
T ss_pred             CCEEECCCCcHHHH-----HHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC----------------------
Confidence            56788999999999     999999999999999988999999999999875321110                      


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|.+++.++.+++++.++++.|.+.+.+++||+++ |+++|+||.+|+++
T Consensus        55 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          55 ----SALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ----CccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence                11235788999888999999999999999999999999999996 99999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.66  E-value=1.5e-15  Score=112.53  Aligned_cols=106  Identities=34%  Similarity=0.524  Sum_probs=94.9

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++..+.++.++.++     ++.|.+.++..+||+|++|+++|+|+..|+.+..                           
T Consensus         3 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~---------------------------   50 (109)
T cd04583           3 NPVTITPDRTLAEA-----IKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY---------------------------   50 (109)
T ss_pred             CCEEECCCCCHHHH-----HHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh---------------------------
Confidence            56788999999999     9999998999999999889999999999998641                           


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                           ....++.++|...++++.+++++.++++.|.+.+..++||++++|+++|+||++|+++
T Consensus        51 -----~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          51 -----KEAKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             -----hcCCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence                 1234678889888999999999999999999999999999998899999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=1e-15  Score=114.08  Aligned_cols=109  Identities=30%  Similarity=0.450  Sum_probs=95.5

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++.+++++.++     ++.|.+.+...+||++++|+++|+|+..|+.+....                         
T Consensus         2 ~~~~v~~~~~i~e~-----~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-------------------------   51 (111)
T cd04639           2 HFETLSPADTLDDA-----ADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE-------------------------   51 (111)
T ss_pred             CceEcCCCCcHHHH-----HHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHh-------------------------
Confidence            46788999999999     999988888999999988999999999999865321                         


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|..+++++.+++++.++++.|.+++..++||++++|+++|+||+.|+.+
T Consensus        52 ----~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          52 ----GGPDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             ----cCCCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence                11234688899888999999999999999999999999999997799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.66  E-value=2.2e-15  Score=112.09  Aligned_cols=107  Identities=29%  Similarity=0.538  Sum_probs=94.9

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.++++..+||+|++|+++|+++..++++...                          
T Consensus         3 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~--------------------------   51 (110)
T cd04605           3 PVVTISEDASIKEA-----AKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA--------------------------   51 (110)
T ss_pred             CCEEECCCCCHHHH-----HHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh--------------------------
Confidence            57889999999999     99999999999999998899999999999986421                          


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                           ....++.++|.+++.++.+++++.++++.|.+.+...+||++++|+++|+||+.|+++
T Consensus        52 -----~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          52 -----RDKKSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             -----hCccCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence                 1123478889888999999999999999999999999999998899999999999965

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.66  E-value=4.6e-16  Score=119.39  Aligned_cols=113  Identities=26%  Similarity=0.274  Sum_probs=95.6

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.++++..+||+|++|+++|+|+..|+++......                       
T Consensus         3 ~~~~v~~~~~v~~a-----~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~-----------------------   54 (124)
T cd04608           3 APVTVLPTVTCAEA-----IEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK-----------------------   54 (124)
T ss_pred             CCEEECCCCCHHHH-----HHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc-----------------------
Confidence            57889999999999     99999999999999998899999999999986432111                       


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHH---------cCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLE---------TKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~---------~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                          .....++.++|.+++.++.+++++.++.++|..         .+...+||++++|+++|+||+.|+++++
T Consensus        55 ----~~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          55 ----VQPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             ----cCCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence                224578999999999999999999999996533         2566788898889999999999999863

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.66  E-value=1.8e-15  Score=111.83  Aligned_cols=104  Identities=25%  Similarity=0.426  Sum_probs=93.1

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++++++++.++.++     ++.|.+++...+||+|++|+++|+++..|+.+..                           
T Consensus         2 ~~~~v~~~~~~~~a-----~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~---------------------------   49 (106)
T cd04582           2 EPITVRPDDPLSDA-----LGLMDDSDLRALTVVDADGQPLGFVTRREAARAS---------------------------   49 (106)
T ss_pred             CCcEecCCCcHHHH-----HHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc---------------------------
Confidence            56789999999999     9999999989999999889999999999998531                           


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                             ..++.++|.+.+.++.+++++.++++.|.+.+...+||+|++|+++|+||+.|+++
T Consensus        50 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          50 -------GGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             -------ccchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                   12467888888888999999999999999999999999998899999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=2e-15  Score=112.85  Aligned_cols=110  Identities=26%  Similarity=0.475  Sum_probs=95.2

Q ss_pred             eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHH
Q 025613           95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK  174 (250)
Q Consensus        95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (250)
                      +..+.+++++.++     ++.|.+.+...+||+|++|+++|+|+..|+.+.....                         
T Consensus         3 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~-------------------------   52 (113)
T cd04615           3 PSCVVLNTDIARA-----VAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES-------------------------   52 (113)
T ss_pred             CEEeeCCCcHHHH-----HHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-------------------------
Confidence            5778999999999     9999999999999999889999999999998642111                         


Q ss_pred             HHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          175 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       175 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                        ......++.++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+||+.|+++
T Consensus        53 --~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          53 --EELKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             --hhhcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence              012345788899888999999999999999999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=1.5e-15  Score=113.95  Aligned_cols=114  Identities=31%  Similarity=0.432  Sum_probs=93.9

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      +++++++++++.++     ++.|.++++..+||+|++|+++|+|+..|+.++......            ..+.      
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~------------~~~~------   58 (116)
T cd04643           2 EVAYVQDTNTLRHA-----LLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLEN------------LDLE------   58 (116)
T ss_pred             CcEEECCCCcHHHH-----HHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCc------------hhHH------
Confidence            57889999999999     999999999999999988999999999999876421110            0000      


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|.+++.++.+++++.+|++.|.+.+  .+||++++|+++|+||..|+++
T Consensus        59 ----~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          59 ----RLVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             ----HHhCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence                00145688999989999999999999999998755  5899998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.65  E-value=1.8e-15  Score=112.86  Aligned_cols=111  Identities=34%  Similarity=0.563  Sum_probs=96.6

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      +++++++++++.++     ++.|.+.++..+||+|++|+++|+|+..||.++.....                       
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~-----------------------   53 (114)
T cd04613           2 DVVTIPEDTPLNEL-----LDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS-----------------------   53 (114)
T ss_pred             CceeeCCCCcHHHH-----HHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc-----------------------
Confidence            57789999999999     99999999999999998899999999999987532100                       


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|.+++.++.+++++.++++.|.+.+...+||+++ +|+++|++|.+|++.
T Consensus        54 ----~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          54 ----LYDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             ----ccccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence                11135788999999999999999999999999999999999997 789999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=3.9e-15  Score=111.13  Aligned_cols=110  Identities=28%  Similarity=0.456  Sum_probs=95.8

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.+++++.++.++     ++.|.+.++..+||+|++|+++|+|+..|++++....                        
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~------------------------   52 (112)
T cd04624           2 PVVTVDPDTSIREA-----AKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG------------------------   52 (112)
T ss_pred             CCeEECCCCcHHHH-----HHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc------------------------
Confidence            46788999999999     9999998999999999889999999999998653211                        


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|.++++++.+++++.++++.|.+.+...+||++++|+++|++|++|+++
T Consensus        53 ----~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          53 ----IDLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             ----CCCccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence                11234688899889999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.64  E-value=3.6e-15  Score=111.69  Aligned_cols=109  Identities=23%  Similarity=0.396  Sum_probs=94.8

Q ss_pred             eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHH
Q 025613           95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK  174 (250)
Q Consensus        95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (250)
                      ..++++++++.++     ++.|.+.++..++|++++|+++|+|+..|+.+++...                         
T Consensus         4 ~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~-------------------------   53 (113)
T cd04607           4 QLLVSPDASILDA-----LRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG-------------------------   53 (113)
T ss_pred             ceEECCCCCHHHH-----HHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC-------------------------
Confidence            5678999999999     9999988889999999889999999999998643210                         


Q ss_pred             HHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          175 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       175 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                         .....++.++|.+.+.++++++++.++++.|.+.+.+++||++++|+++|+||++||+.
T Consensus        54 ---~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          54 ---LSLDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             ---CCcCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence               11235688999988999999999999999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=2.7e-15  Score=113.66  Aligned_cols=120  Identities=35%  Similarity=0.521  Sum_probs=98.0

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++.+++++.++     .+.|.+.++..+||++++|+++|+++..|+++.+..... ....       ..+       
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~-~~~~-------~~~-------   61 (122)
T cd04803           2 PVVTLSEDDSLADA-----EELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLS-DNGE-------ESL-------   61 (122)
T ss_pred             CCEEeCCCCcHHHH-----HHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccc-cccc-------ccc-------
Confidence            56789999999999     999999999999999988999999999999875431110 0000       000       


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                         ......++.++|..+++++.+++++.++++.|.+.+.+.+||++++|+++|+||+.|+++
T Consensus        62 ---~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          62 ---TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             ---ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence               012356788999999999999999999999999999999999997789999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.64  E-value=1.9e-15  Score=113.40  Aligned_cols=109  Identities=29%  Similarity=0.423  Sum_probs=92.2

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcC-CCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV  172 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~-~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (250)
                      ++.++++++++.++     ++.|.+++ ...+||+|++|+++|+|+..||.+...                         
T Consensus         2 ~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-------------------------   51 (114)
T cd04801           2 DFPTVPAHLTLREF-----VREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT-------------------------   51 (114)
T ss_pred             CcceeCCCCCHHHH-----HHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH-------------------------
Confidence            57889999999999     99887664 789999998899999999999986521                         


Q ss_pred             HHHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          173 QKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       173 ~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          ......++.++|.+  .++++.+++++.+|++.|.+.+.+++||+|++|+++|+||.+||++
T Consensus        52 ----~~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          52 ----SQWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             ----hhccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence                01123567888864  3678999999999999999999999999997789999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.64  E-value=3.9e-15  Score=139.27  Aligned_cols=188  Identities=29%  Similarity=0.370  Sum_probs=134.4

Q ss_pred             CeeeeccccccccccCCCCCCCCCCcccccccceecC---CCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCC
Q 025613            2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLL---SRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA   77 (250)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |-+++|.-+.+.--....  .+.-..++.+.+|++..   .-+..+....+.+... -+....-++-...+         
T Consensus        13 dv~l~p~~~~~~~~~~~~--~t~l~~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~---------   81 (486)
T PRK05567         13 DVLLVPAHSEVLPNDVDL--STQLTKNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQAE---------   81 (486)
T ss_pred             ceEecccccCcCcccccc--cchhhhhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHH---------
Confidence            455666655443211122  11222356677887775   3344455555655544 22221111111111         


Q ss_pred             CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS  157 (250)
Q Consensus        78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~  157 (250)
                      .......++++|..  ++.++++++++.++     ++.|.++++..+||+|++|+++|+|+.+||...            
T Consensus        82 ~I~~vk~~~dim~~--~~v~i~~~~tv~ea-----~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~------------  142 (486)
T PRK05567         82 EVRKVKRSESGVVT--DPVTVTPDTTLAEA-----LALMARYGISGVPVVDENGKLVGIITNRDVRFE------------  142 (486)
T ss_pred             HHHHhhhhhhcccC--CCeEeCCCCCHHHH-----HHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhc------------
Confidence            11122357788888  89999999999999     999999999999999999999999999999742            


Q ss_pred             CCCCcccchhchHHHHHHHhccCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                                          .....++.++|. ++++++.+++++.++++.|.+.+.+.+||+|++|+++|+||++||++
T Consensus       143 --------------------~~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~  202 (486)
T PRK05567        143 --------------------TDLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEK  202 (486)
T ss_pred             --------------------ccCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhh
Confidence                                112457889998 78899999999999999999999999999999999999999999998


Q ss_pred             HHH
Q 025613          237 AAL  239 (250)
Q Consensus       237 ~l~  239 (250)
                      .+.
T Consensus       203 ~~~  205 (486)
T PRK05567        203 AEE  205 (486)
T ss_pred             hhh
Confidence            864

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=3.6e-15  Score=111.26  Aligned_cols=109  Identities=26%  Similarity=0.422  Sum_probs=94.6

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++..+++++++.++     ++.|.++++.++||+|++|+++|+++..|+..+....                        
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~------------------------   52 (111)
T cd04626           2 DFPTIDEDASIREA-----LHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE------------------------   52 (111)
T ss_pred             CceEECCCccHHHH-----HHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc------------------------
Confidence            57789999999999     9999999999999999889999999999998642100                        


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|.++++++.+++++.++++.|.+.+...+||+++ |+++|+||+.|+++
T Consensus        53 ----~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          53 ----SFLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             ----ccccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence                01134688889988999999999999999999999999999996 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.64  E-value=4.5e-15  Score=138.66  Aligned_cols=188  Identities=24%  Similarity=0.309  Sum_probs=135.1

Q ss_pred             CeeeeccccccccccCCCCCCCCCCcccccccceecCC---CChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCC
Q 025613            2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLS---RPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA   77 (250)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |-+++|.-+.+..-...  ..+.-..++.+.+|++...   -+-.+....|.+... -+....-++-...+.        
T Consensus        22 dv~l~p~~~~~~~~~v~--~~t~l~~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~--------   91 (495)
T PTZ00314         22 DVILLPGYIDFSRDDVD--LSTRLTRNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCSIEEQVEE--------   91 (495)
T ss_pred             ceEeccccccccccccc--ccccccCCcccCCceeecCccccccHHHHHHHHHCCCeEEecCCCCHHHHHHH--------
Confidence            55677776665332222  2222233677788877662   223445555666655 333222122111111        


Q ss_pred             CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC---CcEEEEEehHHHHhhhhccCCCCC
Q 025613           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRA  154 (250)
Q Consensus        78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~---g~~~GiVt~~dL~~~~~~~~~~~~  154 (250)
                       .-...+.++.|..  +++++++++++.++     ++.|.++++..+||+|++   |+++|+|+.+|+...         
T Consensus        92 -v~kvk~~e~g~i~--dpvtv~pd~tv~eA-----~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~---------  154 (495)
T PTZ00314         92 -VRKVKRFENGFIM--DPYVLSPNHTVADV-----LEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV---------  154 (495)
T ss_pred             -Hhhcccccccccc--CCeecCCCCCHHHH-----HHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc---------
Confidence             1122245567777  78999999999999     999999999999999973   899999999999742         


Q ss_pred             CCCCCCCcccchhchHHHHHHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehH
Q 025613          155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRG  232 (250)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~  232 (250)
                                             .....++.++|++  +++++++++++.+|+++|.+++.+.+||+|++++++|+||++
T Consensus       155 -----------------------~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~  211 (495)
T PTZ00314        155 -----------------------KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRS  211 (495)
T ss_pred             -----------------------ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEeh
Confidence                                   1235679999987  889999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 025613          233 NVVRAAL  239 (250)
Q Consensus       233 Dil~~l~  239 (250)
                      ||++...
T Consensus       212 DIl~~~~  218 (495)
T PTZ00314        212 DLKKNRG  218 (495)
T ss_pred             Hhhhccc
Confidence            9998754

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=2.8e-15  Score=115.68  Aligned_cols=131  Identities=37%  Similarity=0.596  Sum_probs=99.8

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.+.++.++||+|++|+++|+|+..||.++....... .....+..+     .+.+ .
T Consensus         2 ~~~~v~~~~~l~~~-----~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~-~~~~~~~~~-----~~~~-~   69 (132)
T cd04636           2 DVITVKKDDTLRDV-----VEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGL-FYVTLLYSV-----IFLD-E   69 (132)
T ss_pred             CCeEeCCCCcHHHH-----HHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCc-ccccccccc-----cccc-h
Confidence            56789999999999     9999988899999999889999999999998764321100 000000000     0000 1


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                      ..+......++.++|.++++.+.+++++.+++++|.+.+.+.+||+++ |+++|+||++|++++
T Consensus        70 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~  132 (132)
T cd04636          70 SKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS  132 (132)
T ss_pred             HHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence            122233345788999999999999999999999999999999999997 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=4e-15  Score=109.08  Aligned_cols=94  Identities=23%  Similarity=0.499  Sum_probs=86.2

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      +++.+++++++.++     ++.|.++++..+||+|++|+++|+|+..|+.+.                            
T Consensus         2 ~~~~v~~~~~i~~a-----~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~----------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVA-----VRIMELANVKALPVLDDDGKLSGIITERDLIAK----------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHH-----HHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC----------------------------
Confidence            57889999999999     999999999999999988999999999999852                            


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .            .+.++.+++++.++++.|.+++.+++||++++|+++|+||++|+++
T Consensus        49 ----~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          49 ----S------------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             ----C------------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                0            1789999999999999999999999999997799999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.63  E-value=4.5e-15  Score=110.89  Aligned_cols=111  Identities=31%  Similarity=0.415  Sum_probs=96.2

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      +++++++++++.++     ++.+.+.++..+||+|++|+++|+|+..++.+.+....                       
T Consensus         3 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~-----------------------   54 (114)
T cd04604           3 ALPLVSPDTSLKDA-----LLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL-----------------------   54 (114)
T ss_pred             cccccCCCCcHHHH-----HHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC-----------------------
Confidence            57788999999999     99998888889999998899999999999987532111                       


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|.+++.++.+++++.++++.|.+.+...+||++++|+++|+||..||++
T Consensus        55 ----~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          55 ----DILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             ----ccccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence                11234688999988999999999999999999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=5.1e-15  Score=113.30  Aligned_cols=124  Identities=23%  Similarity=0.352  Sum_probs=93.7

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.++++..+||+|++|+++|+|+..|+++...... .........        +.   
T Consensus         2 ~~~~v~~~~~~~~a-----~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~-~~~~~~~~~--------~~---   64 (126)
T cd04642           2 KVVSIDSDERVLDA-----FKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPD-DLLLYRTIT--------FK---   64 (126)
T ss_pred             CeEEECCCccHHHH-----HHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcc-hhhcccchh--------hh---
Confidence            57889999999999     99999999999999998899999999999987532110 000000000        00   


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                      ...  ..-....+.|..++.++++++++.+|++.|.+.+.+++||+|++|+++|+||..||++
T Consensus        65 ~~~--~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          65 ELS--EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             hhh--hhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            000  0011233567778999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=5.4e-15  Score=112.59  Aligned_cols=119  Identities=20%  Similarity=0.210  Sum_probs=92.8

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV  172 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (250)
                      ++.++++++++.++     ++.|.++++..+||+|++ |+++|+|+..|+.+++.......          +.|+.    
T Consensus         2 ~~~~v~~~~~i~~a-----~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~----------~~~~~----   62 (123)
T cd04627           2 PFIPVPSTASLFQA-----IEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSF----------PGLDP----   62 (123)
T ss_pred             CceecCCCCCHHHH-----HHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhc----------cchhh----
Confidence            57788999999999     999998889999999987 99999999999987532111000          00000    


Q ss_pred             HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613          173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  235 (250)
Q Consensus       173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil  235 (250)
                      .    ........++|..++.++++++++.+|++.|.+++.+++||+|++|+++|+||..|+-
T Consensus        63 ~----~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          63 L----YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             h----hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            0    0001223457888889999999999999999999999999999889999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.63  E-value=4.8e-15  Score=111.38  Aligned_cols=106  Identities=36%  Similarity=0.601  Sum_probs=92.7

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN  170 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (250)
                      ++.++.+++++.++     ++.|.+++...+||+|+   +|+++|+|+..|++..                         
T Consensus         3 ~~~~i~~~~~~~~~-----~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~-------------------------   52 (114)
T cd04602           3 DPSVLSPDHTVADV-----LEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL-------------------------   52 (114)
T ss_pred             CCeEcCCCCCHHHH-----HHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh-------------------------
Confidence            46788999999999     99999888889999997   7899999999999743                         


Q ss_pred             HHHHHHhccCCCcccccccCCCeEecC--CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          171 EVQKLLSKTNGKMVGDLMTPAPVVVRE--TTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       171 ~~~~~~~~~~~~~v~~im~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                             .....++.++|.+.+.++..  ++++.++++.|.+++...+||++++|+++|+||++|+++
T Consensus        53 -------~~~~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          53 -------TDSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             -------hccCCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence                   11234588999888888877  999999999999999999999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=3.5e-15  Score=113.55  Aligned_cols=123  Identities=33%  Similarity=0.510  Sum_probs=97.3

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV  172 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (250)
                      ++..+.++.++.++     ++.|.+.++..+||+|++ |+++|+|+..|+.+++.....              |..... 
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~--------------~~~~~~-   61 (125)
T cd04631           2 DVVTVPPTTPIMEA-----AKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEK--------------FNKIKT-   61 (125)
T ss_pred             CceEeCCCCcHHHH-----HHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccch--------------hccccc-
Confidence            56788999999999     999999999999999987 999999999999875421100              000000 


Q ss_pred             HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                       .........++.++|.++++++++++++.++++.|.+.+.+.+||++++|+++|+||+.||+++
T Consensus        62 -~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~  125 (125)
T cd04631          62 -GNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA  125 (125)
T ss_pred             -cccchhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence             0000112356888898889999999999999999999999999999977999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.62  E-value=4.2e-15  Score=110.33  Aligned_cols=106  Identities=44%  Similarity=0.652  Sum_probs=92.9

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++..++.++++.++     .+.|.++++..+||+|++|+++|+++.+++...                            
T Consensus         3 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~----------------------------   49 (110)
T cd04601           3 DPITVSPDATVAEA-----LELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE----------------------------   49 (110)
T ss_pred             CCeEeCCCCcHHHH-----HHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec----------------------------
Confidence            57788999999999     999998999999999988999999999998742                            


Q ss_pred             HHHhccCCCcccccccCCCeEecC-CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRE-TTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|...+.++.+ ++++.++++.|.+.+.+.+||++++|+++|+||++|+++
T Consensus        50 ----~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          50 ----TDLDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             ----ccCCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence                11235688899877777777 999999999999999999999998899999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=3.8e-15  Score=111.41  Aligned_cols=112  Identities=38%  Similarity=0.540  Sum_probs=95.4

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.++++..+||++++|+++|+|+..|+++.+....                       
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~-----------------------   53 (114)
T cd04629           2 NPVTFTPDMSVTEA-----VEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESS-----------------------   53 (114)
T ss_pred             CCeEeCCCCCHHHH-----HHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhh-----------------------
Confidence            46788999999999     99999888889999998899999999999986432100                       


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                        .......++.++|.++++++.+++++.++++.|.+.+...+||+|+ |+++|+||.+||++
T Consensus        54 --~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          54 --YHCDGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             --hccCCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence              0011345788999888999999999999999999999999999996 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=5.7e-15  Score=115.01  Aligned_cols=132  Identities=26%  Similarity=0.390  Sum_probs=98.5

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhc-hHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT-FNEV  172 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  172 (250)
                      ++.++++++++.++     ++.|.++++..+||+|++|+++|+|+..|+++....... .    ......+.|.+ +...
T Consensus         2 ~~~~v~~~~~~~~a-----~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~-~----~~~~~~~~~~~~~~~~   71 (135)
T cd04621           2 DIATVHPEHSLLHV-----VDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNE-R----GLPKKSIKMKRKAGQK   71 (135)
T ss_pred             CceEeCCCCcHHHH-----HHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccc-c----ccchhhhhhhhhcccc
Confidence            56789999999999     999999999999999998999999999999976421100 0    00000111110 0000


Q ss_pred             HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                      ..........++.++|.++++++.+++++.++++.|.+.+.+.+||+++ |+++|+||+.|+++
T Consensus        72 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          72 RYRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccccccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            0011112345789999988999999999999999999999999999995 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.62  E-value=9e-15  Score=108.79  Aligned_cols=108  Identities=36%  Similarity=0.500  Sum_probs=94.4

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++.+++++.++     ++.|.++++.++||+++ |+++|+++..|++++...                         
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~-------------------------   50 (110)
T cd04588           2 PLITLNPNATLREA-----ARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIAR-------------------------   50 (110)
T ss_pred             CcEEECCCCCHHHH-----HHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhc-------------------------
Confidence            57789999999999     99999999999999998 999999999999875221                         


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|..+++++++++++.++++.|.+.+.+++||++++|+++|+||..|+++
T Consensus        51 ----~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          51 ----GLELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             ----cccccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence                01125678888888999999999999999999999999999998799999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=4.2e-15  Score=112.65  Aligned_cols=120  Identities=28%  Similarity=0.493  Sum_probs=97.0

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++.+++++.++     ++.|.+.++..+||+|++|+++|+++..||++.......        ..  .        .
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~--------~~--~--------~   58 (122)
T cd04635           2 EPVTCTPDDPVSKV-----WDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTS--------VE--D--------Q   58 (122)
T ss_pred             CCEEeCCCCcHHHH-----HHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhcccccc--------cc--c--------h
Confidence            57889999999999     999998899999999988999999999999864211100        00  0        0


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                      .........++.++|..+++++.+++++.++++.|.+.+.+.+||++++|+++|++|+.|+++
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          59 QRTQTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             hhhhhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            000012345688899888999999999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.62  E-value=6.2e-15  Score=110.06  Aligned_cols=111  Identities=34%  Similarity=0.551  Sum_probs=94.1

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++.+++++.++     ++.|.+++...+||+++ |+++|+|+..|++......+.                      
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~----------------------   53 (113)
T cd04587           2 KPATVSPTTTVQEA-----AKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL----------------------   53 (113)
T ss_pred             CCeEeCCCCCHHHH-----HHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC----------------------
Confidence            56788999999999     99999888889999997 999999999999743211110                      


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|.+++.++.+++++.++++.|.+.+..++||++++|+++|+||..|++.
T Consensus        54 ----~~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          54 ----DPESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             ----CcCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence                11125788899988999999999999999999999999999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=8.6e-15  Score=109.87  Aligned_cols=110  Identities=25%  Similarity=0.489  Sum_probs=91.4

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcC-CCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV  172 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~-~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (250)
                      ++.++.++.++.++     ++.|.+++ ...++|++ +|+++|+|+..|++++.....                      
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~----------------------   53 (115)
T cd04620           2 HPLTVTPDTPVADA-----IALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK----------------------   53 (115)
T ss_pred             CCeEeCCCCcHHHH-----HHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC----------------------
Confidence            46788999999999     99998877 66777777 589999999999987532100                      


Q ss_pred             HHHHhccCCCcccccccCCCeEecCC--CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          173 QKLLSKTNGKMVGDLMTPAPVVVRET--TNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       173 ~~~~~~~~~~~v~~im~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                           .....++.++|.++++++.++  +++.+|++.|.+++...+||+|++|+++|+||++|+++
T Consensus        54 -----~~~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          54 -----DLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             -----CccccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence                 112356888998888899887  78999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.62  E-value=8.7e-15  Score=109.03  Aligned_cols=109  Identities=34%  Similarity=0.554  Sum_probs=93.9

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.+++++.++.++     .+.|.++++..+||+|+ |+++|+|+..|+.+.+...+                       
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~-----------------------   52 (111)
T cd04800           2 PPVTCSPDTTIREA-----ARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEG-----------------------   52 (111)
T ss_pred             CCEEECCCCcHHHH-----HHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccC-----------------------
Confidence            57789999999999     99999888999999997 99999999999986422111                       


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|..+++++++++++.++++.|.+.+..++||+++ |+++|+||++|+++
T Consensus        53 ----~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          53 ----LDPDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             ----CCccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence                11235688899889999999999999999999999999999996 99999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.62  E-value=5.5e-15  Score=137.09  Aligned_cols=125  Identities=26%  Similarity=0.383  Sum_probs=109.7

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHH-----cCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR  153 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~-----~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~  153 (250)
                      .....+++++|++  ++.++++++++.++     ++.+++     .+...++|+|++|+++|+|+.+|++..        
T Consensus       127 ~~~e~tvg~iMt~--~~~~v~~~~tv~ea-----l~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a--------  191 (449)
T TIGR00400       127 SYSDDSAGRIMTI--EYVELKEDYTVGKA-----LDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA--------  191 (449)
T ss_pred             CCCcchHHHhCcC--ceEEECCCCcHHHH-----HHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC--------
Confidence            4456689999998  99999999999999     999975     344678889988999999999999742        


Q ss_pred             CCCCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHH
Q 025613          154 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGN  233 (250)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~D  233 (250)
                                               ....+++++|.++++++++++++.+|++.|.+++...+||||++|+++|+||.+|
T Consensus       192 -------------------------~~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~D  246 (449)
T TIGR00400       192 -------------------------KPEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDD  246 (449)
T ss_pred             -------------------------CCCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHH
Confidence                                     1245799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh
Q 025613          234 VVRAALQIKH  243 (250)
Q Consensus       234 il~~l~~~~~  243 (250)
                      +++.+.+...
T Consensus       247 il~~l~~~~~  256 (449)
T TIGR00400       247 IIDVIQSEAT  256 (449)
T ss_pred             HHHHHHhhhH
Confidence            9999877554

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.62  E-value=9.8e-15  Score=108.68  Aligned_cols=107  Identities=34%  Similarity=0.544  Sum_probs=94.6

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.+++.+.++.++     .+.|.++++..+||+|+ |+++|+|+..|+.+....                         
T Consensus         3 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~-------------------------   51 (110)
T cd04595           3 PVKTVRPEATIEEA-----RELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRH-------------------------   51 (110)
T ss_pred             CceEeCCCCcHHHH-----HHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhc-------------------------
Confidence            57889999999999     99999889999999998 999999999999864210                         


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|.++++++.+++++.+++++|.+.+.+++||++ +|+++|+||+.|+++
T Consensus        52 ----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          52 ----GLGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ----ccccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence                1134678889999999999999999999999999999999999 899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.62  E-value=4.1e-15  Score=115.21  Aligned_cols=128  Identities=36%  Similarity=0.646  Sum_probs=98.7

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++.+++++.++     ++.|.++++.++||+|++|+++|+|+..|+.+.......         .....|.......
T Consensus         3 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~---------~~~~~~~~~~~~~   68 (135)
T cd04586           3 DVVTVSPETSVAEA-----ARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTE---------RRRARWLDLLAGA   68 (135)
T ss_pred             CCEEeCCCCCHHHH-----HHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCc---------chhhhHHHHhcch
Confidence            67889999999999     999999999999999988999999999999865321100         0001121110000


Q ss_pred             H----HHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 K----LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~----~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                      .    ........++.++|.++++++.+++++.++++.|.+.+.+++||+| +|+++|+||+.|+++
T Consensus        69 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          69 EELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHHHHHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            0    0011234578999998999999999999999999999999999999 899999999999986

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.61  E-value=9.4e-15  Score=108.96  Aligned_cols=110  Identities=22%  Similarity=0.328  Sum_probs=94.3

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      +++.++++.++.++     ++.|.+++...++|+|+ |++.|+++..|+++......                       
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~-----------------------   52 (111)
T cd04589           2 PPLIVDASTSIRDA-----ARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDG-----------------------   52 (111)
T ss_pred             CCEEECCCCcHHHH-----HHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCC-----------------------
Confidence            46788999999999     99999888899999998 89999999999987532100                       


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                          .....++.++|.+++.++++++++.++++.|.+.+...+||++ +|+++|+||..|++++
T Consensus        53 ----~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~~  111 (111)
T cd04589          53 ----LPSSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-GGEVVGVLEQTDLLSF  111 (111)
T ss_pred             ----CCCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEee-CCEEEEEEEhHHhhcC
Confidence                1234578889998899999999999999999999999999998 5899999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.61  E-value=1e-14  Score=135.43  Aligned_cols=122  Identities=30%  Similarity=0.381  Sum_probs=107.3

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      ....+++.++|..  +++++.+++++.++     ++.|.++++..+||+|+ ++++|+||.+||...             
T Consensus        84 ~v~~VKv~eim~~--~pvtv~p~~tI~eA-----~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~-------------  142 (475)
T TIGR01303        84 TVAFVKSRDLVLD--TPITLAPHDTVSDA-----MALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV-------------  142 (475)
T ss_pred             HHhhcchhhcccc--CCeEECCCCCHHHH-----HHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC-------------
Confidence            3446678888988  88999999999999     99999999988988884 799999999999632             


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                          ....++.++|+++++++++++++.+|+++|.+++++++||+|++|+++|+||++||++..
T Consensus       143 --------------------~~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~  202 (475)
T TIGR01303       143 --------------------DRFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRAT  202 (475)
T ss_pred             --------------------CCCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence                                123579999999999999999999999999999999999999889999999999999876


Q ss_pred             Hhh
Q 025613          239 LQI  241 (250)
Q Consensus       239 ~~~  241 (250)
                      ...
T Consensus       203 ~~~  205 (475)
T TIGR01303       203 IYT  205 (475)
T ss_pred             hCC
Confidence            543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=9.6e-15  Score=109.03  Aligned_cols=111  Identities=39%  Similarity=0.680  Sum_probs=93.7

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.++++..+||+++ |+++|+++..|++......+.                      
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~----------------------   53 (113)
T cd04622           2 DVVTVSPDDTIREA-----ARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR----------------------   53 (113)
T ss_pred             CCEEECCCCcHHHH-----HHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC----------------------
Confidence            57789999999999     99999999999999997 999999999998732111110                      


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|..++.++.+++++.++++.|.+.+...+||++++|+++|+||+.|+++
T Consensus        54 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          54 ----DPDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             ----CcccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                11123488899989999999999999999999999999999997799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.61  E-value=5.2e-15  Score=110.24  Aligned_cols=102  Identities=38%  Similarity=0.509  Sum_probs=89.5

Q ss_pred             eCCCCchhcccchhHHHHHHHcC-----CCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613           98 VKPTTTVDEAFVPTALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV  172 (250)
Q Consensus        98 v~~~~~v~~a~~~~~~~~~~~~~-----~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (250)
                      +.+++++.++     ++.|.+++     +..+||+|++|+++|+|+.+++.+.                           
T Consensus         2 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~---------------------------   49 (109)
T cd04606           2 VREDWTVGEA-----LEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA---------------------------   49 (109)
T ss_pred             ccccCcHHHH-----HHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC---------------------------
Confidence            5678899999     99998776     4689999988999999999999852                           


Q ss_pred             HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                            ....++.++|.++++++.+++++.++++.|.+.+...+||++++|+++|+||+.|+++.
T Consensus        50 ------~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          50 ------DPDTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             ------CCcchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence                  12356888898889999999999999999999999999999988999999999999975

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.61  E-value=1.3e-14  Score=107.80  Aligned_cols=109  Identities=31%  Similarity=0.514  Sum_probs=94.9

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.++++..+||+++ |+++|+++..||.++....                        
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~------------------------   51 (111)
T cd04611           2 QILTCPPDTSLAEA-----ASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASG------------------------   51 (111)
T ss_pred             CceEECCCCcHHHH-----HHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcC------------------------
Confidence            46789999999999     99999888889999987 8999999999998753210                        


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|.++++++.+++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus        52 ----~~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          52 ----PDLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             ----CCCCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence                01346788899888999999999999999999999999999998899999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.61  E-value=5.2e-15  Score=138.15  Aligned_cols=119  Identities=25%  Similarity=0.368  Sum_probs=101.9

Q ss_pred             eeccccccC-CceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCCCCCCC
Q 025613           84 TVGDFMTTK-EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMF  159 (250)
Q Consensus        84 ~v~~~m~~~-~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~  159 (250)
                      .++++|... .+.+++++++++.++     ++.|.++++..+||+|+   +|+++|+||..||+...             
T Consensus        95 kVk~~~~g~i~~~~tV~pd~tl~eA-----l~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-------------  156 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTPDNTLADV-----LDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-------------  156 (502)
T ss_pred             HHHHHhcCCcCCCCEeCCCCcHHHH-----HHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-------------
Confidence            466666521 145789999999999     99999999999999996   58999999999997420             


Q ss_pred             CCcccchhchHHHHHHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                                        .....++.++|++  +++++++++++.+|+++|.++++..+||+|++|+++|+||++|+++.
T Consensus       157 ------------------~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        157 ------------------MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             ------------------cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence                              1235679999986  77889999999999999999999999999988999999999999986


Q ss_pred             H
Q 025613          238 A  238 (250)
Q Consensus       238 l  238 (250)
                      .
T Consensus       219 ~  219 (502)
T PRK07107        219 K  219 (502)
T ss_pred             c
Confidence            4

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=4.8e-15  Score=113.55  Aligned_cols=114  Identities=26%  Similarity=0.453  Sum_probs=91.5

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++.+++++.++     ++.|.+++...+||+|++|+++|+|+..|+.+....                        .
T Consensus         2 ~~~~v~~~~~i~~a-----~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~------------------------~   52 (126)
T cd04640           2 KPIVIPADTSIDEA-----LELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPI------------------------K   52 (126)
T ss_pred             CCeEECCCCcHHHH-----HHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhh------------------------H
Confidence            46788999999999     999998898999999988999999999999852100                        0


Q ss_pred             HHHh---ccCCCcccccccCCCeEe------cCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHH
Q 025613          174 KLLS---KTNGKMVGDLMTPAPVVV------RETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~---~~~~~~v~~im~~~~~~v------~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~  236 (250)
                      ....   .....++.++|.+++.++      .+++++.++++.|.+.+.+++||+|++ |+++|+||+.||++
T Consensus        53 ~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          53 RIQEGGISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHHHcCCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            0000   112456889998765443      368999999999999999999999976 79999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11573 hypothetical protein; Provisional

Probab=99.61  E-value=6.7e-15  Score=134.95  Aligned_cols=189  Identities=13%  Similarity=0.060  Sum_probs=135.8

Q ss_pred             ccccccCCCCCCCCCCcccccccceecCC------CChhHHHHHhhhcCCeeeeeCCCcccccccccccCCCCCCCCCce
Q 025613           11 SVARLRAPPAGRTSGRTSFALQLPCLLLS------RPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYT   84 (250)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (250)
                      .+..+.+|+.|..++.+++..++......      .+..++...++....         ....+...+.. ..-.++..+
T Consensus       119 ~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~eEl~~lv~~~~~---------~l~~~e~~mi~-~vl~l~~~~  188 (413)
T PRK11573        119 PLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVHESRS---------QISRRNQDMLL-SVLDLEKVT  188 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHhh---------hcCHHHHHHHH-HHhccCCCC
Confidence            45567777788777777776654443322      112233332322111         11111111111 245778889


Q ss_pred             eccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCCCcc
Q 025613           85 VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  163 (250)
Q Consensus        85 v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~  163 (250)
                      ++++|+|+.++..++.++++.++     ++.+.+++++++||++++ ++++|+|+.+|++.......             
T Consensus       189 v~eiMtPr~~i~~l~~~~~~~e~-----~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-------------  250 (413)
T PRK11573        189 VDDIMVPRNEIVGIDINDDWKSI-----LRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-------------  250 (413)
T ss_pred             hhhcCCccceEEEEECCCCHHHH-----HHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------------
Confidence            99999999999999999999999     999999999999999865 78999999999986421000             


Q ss_pred             cchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613          164 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                                    ......+.+++. ++.+|++++++.++++.|++.+.+.+.|+||.|...|+||.+||++.+....
T Consensus       251 --------------~~~~~~l~~~~r-~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei  314 (413)
T PRK11573        251 --------------EFTKENMLRAAD-EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF  314 (413)
T ss_pred             --------------cCCHHHHHhhcc-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence                          001122445554 5889999999999999999999999999999999999999999999988544

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=8.3e-15  Score=112.25  Aligned_cols=124  Identities=26%  Similarity=0.373  Sum_probs=95.9

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++..+.+++++.++     ++.|.+.+.+++||+|++|+++|+|+..|+.+++......             + .+....
T Consensus         2 ~~~~i~~~~~~~~~-----~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~-------------~-~~~~~~   62 (128)
T cd04632           2 DVITVREDDSVGKA-----INVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDK-------------A-RTGDRS   62 (128)
T ss_pred             CceEeCCCCCHHHH-----HHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhh-------------c-chhhhh
Confidence            56788999999999     9999999999999999889999999999998653211000             0 000000


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD--ADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd--~~g~~vGiIt~~Dil~  236 (250)
                      .........++.++|.++++++.+++++.++++.|.+.+...+||++  ++|+++|+||++|+++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          63 GEKERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             hhhhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            00001224568899988899999999999999999999999999985  3689999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.61  E-value=2.2e-14  Score=134.20  Aligned_cols=113  Identities=26%  Similarity=0.389  Sum_probs=101.6

Q ss_pred             cccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccc
Q 025613           89 MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST  165 (250)
Q Consensus        89 m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~  165 (250)
                      |.+  +++++.+++++.++     ++.|.++++..+||+|+   +|+++|+|+.+|+...                    
T Consensus       106 mi~--dpvtV~pd~tV~dA-----~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v--------------------  158 (505)
T PLN02274        106 FVS--DPVVKSPSSTISSL-----DELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFV--------------------  158 (505)
T ss_pred             ccC--CCeeeCCCCcHHHH-----HHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhc--------------------
Confidence            666  79999999999999     99999999999999997   4899999999999743                    


Q ss_pred             hhchHHHHHHHhccCCCcccccccCC--CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          166 WKTFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                  .....++.++|+++  ++++.+++++.+|++.|.+++...+||||++|+++|+||++||++.+..
T Consensus       159 ------------~~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        159 ------------NDRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             ------------cccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence                        12356799999876  7899999999999999999999999999988999999999999998765

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.60  E-value=1.3e-14  Score=108.03  Aligned_cols=108  Identities=27%  Similarity=0.416  Sum_probs=92.4

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV  172 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (250)
                      ++.++++++++.++     .+.|.+.++..+||++++ |+++|+++..|+.++....                       
T Consensus         2 ~~~~i~~~~~i~~a-----~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~-----------------------   53 (111)
T cd04590           2 DIVALDADDTLEEI-----LELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG-----------------------   53 (111)
T ss_pred             ceEEEcCCCCHHHH-----HHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC-----------------------
Confidence            57889999999999     999999889999999988 9999999999999763210                       


Q ss_pred             HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                            ....++.++|. ++.++.+++++.++++.|.+++.+++||++++|+++|+||+.|+++
T Consensus        54 ------~~~~~~~~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          54 ------EEDLDLRDLLR-PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             ------CCcCCHHHHhc-CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence                  00134566664 5889999999999999999999999999998899999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.60  E-value=1.5e-14  Score=109.05  Aligned_cols=120  Identities=38%  Similarity=0.586  Sum_probs=96.4

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.+++++.++.++     ++.|.+.++..+||+|+ |+++|+++..|+.++.........          .|+.     
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~----------~~~~-----   60 (122)
T cd04585           2 NPITVTPDTSLMEA-----LKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLD----------IWEL-----   60 (122)
T ss_pred             CCEEeCCCCcHHHH-----HHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhccccccc----------chhh-----
Confidence            46788999999999     99999999999999997 999999999999976421110000          0000     


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                        .......++.++|.+++.++.+++++.+++..|.+.+.+.+||++++|+++|+||+.|+++
T Consensus        61 --~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          61 --YYLLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             --hhhhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence              0001235688899999999999999999999999999999999997799999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.60  E-value=1.7e-14  Score=106.58  Aligned_cols=104  Identities=38%  Similarity=0.640  Sum_probs=92.9

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++++++.+.++.++     ++.|.+.+...+||+|+ |+++|+++..||...                            
T Consensus         3 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~----------------------------   48 (107)
T cd04610           3 DVITVSPDNTVKDV-----IKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK----------------------------   48 (107)
T ss_pred             CcEEECCCCcHHHH-----HHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc----------------------------
Confidence            57889999999999     99998888889999997 899999999999842                            


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                           ....++.++|...+.++.+++++.++++.|.+++...+||++++|+++|+|+..|+++
T Consensus        49 -----~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          49 -----DPDETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             -----CccccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence                 1134688899888999999999999999999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.60  E-value=1.6e-14  Score=106.35  Aligned_cols=103  Identities=36%  Similarity=0.594  Sum_probs=91.6

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++..+++++++.++     ++.|.++++..+||+| +|+++|+++..|+.++                            
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~----------------------------   47 (105)
T cd04599           2 DPITIDPLDSVGRA-----ARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA----------------------------   47 (105)
T ss_pred             CCEEECCCCcHHHH-----HHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc----------------------------
Confidence            46778999999999     9999988889999998 5899999999999853                            


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                           ....++.++|.+++.++++++++.++++.|.+.+..++||+++ |+++|+||..|++.
T Consensus        48 -----~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          48 -----HPNRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             -----cccCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence                 1134578889889999999999999999999999999999996 99999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.60  E-value=1.9e-14  Score=106.90  Aligned_cols=109  Identities=38%  Similarity=0.637  Sum_probs=94.2

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++..+++++++.++     ++.|.+.++..+||+|+ |+++|+++..||.+.....                        
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~------------------------   51 (111)
T cd04612           2 DVVTVPVDLTVDEV-----LALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEG------------------------   51 (111)
T ss_pred             CCEEeCCCCcHHHH-----HHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcC------------------------
Confidence            57889999999999     99999988999999998 9999999999998653210                        


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          .....++.++|.++++++.+++++.++++.|.+.+.+++||++++|+++|+||..|+++
T Consensus        52 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          52 ----REATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             ----cccccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence                01113577889899999999999999999999999999999997799999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=2.1e-14  Score=107.07  Aligned_cols=110  Identities=28%  Similarity=0.520  Sum_probs=91.7

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.+++...++|.+ +|+++|+|+..|+.+.....+                       
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~-----------------------   52 (112)
T cd04625           2 TIYTVAPETLLSEA-----VATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHG-----------------------   52 (112)
T ss_pred             CcEEECCCCcHHHH-----HHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcC-----------------------
Confidence            57789999999999     9999888877777665 589999999999986532110                       


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                         ......++.++|...+.++.+++++.++++.|.+.+...+||++ +|+++|+||++|+++
T Consensus        53 ---~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          53 ---AGVLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             ---CchhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence               01123568899988889999999999999999999999999998 689999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.59  E-value=1.7e-14  Score=106.72  Aligned_cols=100  Identities=33%  Similarity=0.401  Sum_probs=89.6

Q ss_pred             eEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHH
Q 025613           96 HVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL  175 (250)
Q Consensus        96 ~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (250)
                      .++++++++.++     ++.|.+.++..+||+|+ |+++|+|+..|+.+.                              
T Consensus         4 ~~v~~~~~~~~~-----~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~------------------------------   47 (104)
T cd04594           4 IKVKDYDKVYEA-----KRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA------------------------------   47 (104)
T ss_pred             eEECCCCCHHHH-----HHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh------------------------------
Confidence            567899999999     99999999999999998 999999999999853                              


Q ss_pred             HhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          176 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       176 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          ...++.++|.+.++++++++++.++++.|.+++...+||++ +|+++|+||..|+++
T Consensus        48 ----~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          48 ----TYGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             ----cccchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence                12346778888899999999999999999999999999998 699999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.58  E-value=2e-14  Score=106.58  Aligned_cols=109  Identities=30%  Similarity=0.411  Sum_probs=91.1

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.++++..+||+++ |+++|+++..|+.+......                       
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~-----------------------   52 (110)
T cd04609           2 DVVSVAPDDTVSQA-----IERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGK-----------------------   52 (110)
T ss_pred             CcEEECCCCcHHHH-----HHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccc-----------------------
Confidence            56788999999999     99999999999999997 99999999999997532111                       


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                          .....++.++|.++++++++++++.+++++|.+ .. .+||++++|+++|+||++|++++
T Consensus        53 ----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          53 ----AKFSLPVREVMGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLKY  110 (110)
T ss_pred             ----cccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhcC
Confidence                011356888898889999999999999999988 33 47888888999999999999863

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=2.1e-14  Score=108.84  Aligned_cols=121  Identities=31%  Similarity=0.459  Sum_probs=96.0

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.++++.++||+|+ |+++|+++..++.+.+.....            ..++..   .
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~------------~~~~~~---~   60 (122)
T cd04637           2 RVVTVEMDDRLEEV-----REIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLG------------TAGETE---K   60 (122)
T ss_pred             CceEeCCCCCHHHH-----HHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhc------------cccchH---H
Confidence            46789999999999     99999999999999997 899999999999875321000            000000   0


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                      ..  .....++.++|.++++++.+++++.++++.|.+++...+||++++|+++|++|+.|++++
T Consensus        61 ~~--~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~  122 (122)
T cd04637          61 DL--ATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY  122 (122)
T ss_pred             HH--HHHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence            00  011346888899999999999999999999999999999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=3.4e-14  Score=107.41  Aligned_cols=119  Identities=32%  Similarity=0.505  Sum_probs=95.6

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++..+.+++++.++     ++.|.+.++..+||+|+ |+++|+++..++.+.......             .|..    .
T Consensus         2 ~~~~i~~~~~~~~~-----~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~-------------~~~~----~   58 (121)
T cd04633           2 PVITVSPDDRVSHA-----RRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRP-------------LVRD----R   58 (121)
T ss_pred             CCEEECCCCcHHHH-----HHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhh-------------cccc----h
Confidence            46788999999999     99999989999999997 999999999999875432110             0000    0


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                      .........++.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+||..|+++
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          59 HQERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             hhhhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            000011345788899889999999999999999999999999999996 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.55  E-value=4.5e-14  Score=105.08  Aligned_cols=100  Identities=33%  Similarity=0.539  Sum_probs=89.5

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN  170 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (250)
                      +...+.+++++.++     .+.+.+.++..+||+++   +|+++|+|+.+|+.+...                       
T Consensus         3 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~-----------------------   54 (105)
T cd04591           3 LVVLLPEGMTVEDL-----ESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK-----------------------   54 (105)
T ss_pred             ceEEecccccHHHH-----HHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH-----------------------
Confidence            57788999999999     99999988889999998   689999999999986411                       


Q ss_pred             HHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          171 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       171 ~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                             .        +|.++++++++++++.++++.|.+.+.+.+||++ +|+++|+||+.|++++
T Consensus        55 -------~--------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          55 -------N--------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA  105 (105)
T ss_pred             -------H--------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence                   0        7888899999999999999999999999999996 7899999999999763

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.55  E-value=1.5e-14  Score=132.61  Aligned_cols=127  Identities=25%  Similarity=0.409  Sum_probs=114.6

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      .+-..+++++++.  +.++|++..++.+|     .+.|.+.+.+.+.++++++...||||++|+.......|        
T Consensus       145 e~~~trv~~~~~~--~~~~v~~~~~i~~a-----a~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g--------  209 (610)
T COG2905         145 EFILTRVGEVKTL--PAVTVSPQASIQDA-----ARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG--------  209 (610)
T ss_pred             hHHHHHHHHHhcC--CCcccCccCcHHHH-----HHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC--------
Confidence            3344578899988  89999999999999     99999999999999999999999999999998755444        


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                         .....+++++|+.++++|..++.+.+|+-+|.+.+++++||++ +|+++|+||..||++..
T Consensus       210 -------------------~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         210 -------------------RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF  269 (610)
T ss_pred             -------------------CCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence                               3457899999999999999999999999999999999999998 79999999999999887


Q ss_pred             Hh
Q 025613          239 LQ  240 (250)
Q Consensus       239 ~~  240 (250)
                      .+
T Consensus       270 s~  271 (610)
T COG2905         270 SQ  271 (610)
T ss_pred             CC
Confidence            64

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.55  E-value=3.1e-14  Score=123.31  Aligned_cols=114  Identities=32%  Similarity=0.403  Sum_probs=100.8

Q ss_pred             CceeccccccCCc-eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           82 VYTVGDFMTTKEE-LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        82 ~~~v~~~m~~~~~-~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      .++++++|.+  + ++++++++++.++     ++.|.+.++..+||+|++|+++|+|+..|+.++... +          
T Consensus       154 ~~~v~~im~~--~~~~~v~~~~~v~~a-----~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-~----------  215 (268)
T TIGR00393       154 LVKVKDLMQT--TDLPLIAPTTSFKDA-----LLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-G----------  215 (268)
T ss_pred             hhhHHHHhCC--CCCCcCCCCCcHHHH-----HHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc-C----------
Confidence            4789999988  6 8999999999999     999998899999999988999999999999875321 0          


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT  230 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt  230 (250)
                                       .....++.++|.++++++.+++++.+|++.|.+.+...+||+|++|+++|+|+
T Consensus       216 -----------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       216 -----------------GSLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             -----------------CcccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                             12346799999999999999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.2e-13  Score=103.01  Aligned_cols=110  Identities=35%  Similarity=0.551  Sum_probs=92.6

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.+.+...+||++++ +++|+++..|+++.+...+                       
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~-~~~G~v~~~dl~~~~~~~~-----------------------   52 (112)
T cd04802           2 NVITVDPDTTVYEA-----ANIMTENNIGRLIVVDNE-KPVGIITERDLVKKVVSRN-----------------------   52 (112)
T ss_pred             CcEEECCCCCHHHH-----HHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHhhcc-----------------------
Confidence            46788999999999     999998889999999964 9999999999997532110                       


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                         ......++.++|.++++++.+++++.++++.|.+.+...+||++++ +++|+||+.|+++
T Consensus        53 ---~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          53 ---LKPREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             ---CCcccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence               0112356888998889999999999999999999999999999954 9999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.55  E-value=4.5e-14  Score=134.12  Aligned_cols=147  Identities=29%  Similarity=0.426  Sum_probs=116.2

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCC-----------
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS-----------  151 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~-----------  151 (250)
                      .+++++|.+  ++.++++++++.+|     ++.|.++++..+||+|++|+++|+|+..|+.+.......           
T Consensus        68 ~~V~dim~~--~~~~v~~~~~l~~a-----~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~  140 (546)
T PRK14869         68 PQVRDLEID--KPVTVSPDTSLKEA-----WNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSL  140 (546)
T ss_pred             CcHHHhcCC--CCcEECCCCcHHHH-----HHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCH
Confidence            589999998  89999999999999     999999999999999998999999999999875332110           


Q ss_pred             ---------------CCCC---C--------------C------------------------------------------
Q 025613          152 ---------------GRAD---N--------------S------------------------------------------  157 (250)
Q Consensus       152 ---------------~~~~---~--------------~------------------------------------------  157 (250)
                                     ....   .              .                                          
T Consensus       141 ~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~l  220 (546)
T PRK14869        141 ENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLEL  220 (546)
T ss_pred             HHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence                           0000   0              0                                          


Q ss_pred             ----CCCCcccchhchHHHHHHHhccCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehH
Q 025613          158 ----MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRG  232 (250)
Q Consensus       158 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~  232 (250)
                          -.+.+.+.|++|...+.+   ....++.++|+ ++++++++++++.++.+.|.+.+.+.+||+|++|+++|+||++
T Consensus       221 a~~~~i~ii~t~~dt~~t~~~l---~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~  297 (546)
T PRK14869        221 AKENGVTVISTPYDTFTTARLI---NQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRY  297 (546)
T ss_pred             HHhCCCeEEEecccHHHHHHHh---hcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHH
Confidence                000112333444444443   34678999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 025613          233 NVVRAAL  239 (250)
Q Consensus       233 Dil~~l~  239 (250)
                      |+++...
T Consensus       298 dl~~~~~  304 (546)
T PRK14869        298 HLLSPVR  304 (546)
T ss_pred             Hhhcccc
Confidence            9998654

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.54  E-value=9.3e-14  Score=128.19  Aligned_cols=193  Identities=22%  Similarity=0.177  Sum_probs=136.6

Q ss_pred             ccccccCCCCCCCCCCcccccccceecCC--CChhHHHHHhhhcCCeeeeeCCCcccccccccccCCCCCCCCCceeccc
Q 025613           11 SVARLRAPPAGRTSGRTSFALQLPCLLLS--RPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF   88 (250)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   88 (250)
                      ++.++.+|..|...+++++-+....+...  ..........+    .+...........+...+.. ....+...+++++
T Consensus       137 ~~~~l~~P~i~~~~~~a~~il~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~E~~mi~-~v~~l~~~~v~ei  211 (429)
T COG1253         137 FFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELE----LVSESAEEGVLEEEEREMIN-NVLDLDDRTVREI  211 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccCccHHHHH----HHHhHHhcCCcCHHHHHHHH-HHhccCCcEeeeE
Confidence            45566677777778877777776655531  11111000000    00111112222222222221 2457788899999


Q ss_pred             cccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEe-CCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchh
Q 025613           89 MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  167 (250)
Q Consensus        89 m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd-~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~  167 (250)
                      |+|+.++..++.+.++.++     .+.+.+++++.+||++ +.+.++|+|+.+||+.......                 
T Consensus       212 MtPR~~i~~l~~~~~~~~~-----~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~-----------------  269 (429)
T COG1253         212 MTPRTDIVALDLTDTVEEL-----IELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ-----------------  269 (429)
T ss_pred             eeecccEEEEcCCCCHHHH-----HHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc-----------------
Confidence            9999999999999999999     9999999999999999 4478999999999997532111                 


Q ss_pred             chHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhh
Q 025613          168 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH  243 (250)
Q Consensus       168 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~  243 (250)
                                  ........+. +|+.|++++++.++++.|++.+.+.+.|+||.|.+.|+||.+||++.+.....
T Consensus       270 ------------~~~~~~~~~~-~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~  332 (429)
T COG1253         270 ------------SDLDLRVLVR-PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIP  332 (429)
T ss_pred             ------------cccchhhccc-CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCc
Confidence                        0111222233 68999999999999999999999999999999999999999999999987543

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.3e-13  Score=101.58  Aligned_cols=111  Identities=48%  Similarity=0.747  Sum_probs=94.0

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++..++.+.++.++     .+.|.+++...+||++++++++|+++..|+.+......                       
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~-----------------------   53 (113)
T cd02205           2 DVVTVSPDDTVAEA-----LRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG-----------------------   53 (113)
T ss_pred             CceEecCCCCHHHH-----HHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc-----------------------
Confidence            46788999999999     99999988899999998899999999999987532110                       


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                          ......+.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+++
T Consensus        54 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          54 ----LDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             ----CCccccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence                01112266788888999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.54  E-value=7.2e-14  Score=105.52  Aligned_cols=119  Identities=35%  Similarity=0.530  Sum_probs=95.7

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++++++++.++     ++.|.+.++..+||+|++|+++|+|+..++.+..........                 ..
T Consensus         2 ~~~~~~~~~~l~~a-----~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-----------------~~   59 (121)
T cd04584           2 DVVTITPTTTIAEA-----LELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS-----------------EH   59 (121)
T ss_pred             CCEEECCCCCHHHH-----HHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch-----------------hh
Confidence            46788999999999     999998899999999988999999999999864321100000                 00


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                      .. ......++.++|.++++++.+++++.++++.|.+.+..++||+++ |+++|++|.+||++
T Consensus        60 ~~-~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          60 EL-YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             hh-hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            00 012345688899889999999999999999999999999999985 99999999999985

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.53  E-value=6.1e-14  Score=130.29  Aligned_cols=124  Identities=25%  Similarity=0.335  Sum_probs=103.9

Q ss_pred             CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS  157 (250)
Q Consensus        78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~  157 (250)
                      ..+..++++++|.+  ++.++.+++++.++     ++.|.++++..+||+|++|+++|+|+..|+++.+....       
T Consensus       330 ~~l~~~~v~~im~~--~~~~v~~~~tl~ea-----~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------  395 (454)
T TIGR01137       330 DVLKNATVKDLHLP--APVTVHPTETVGDA-----IEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK-------  395 (454)
T ss_pred             HHhccCCHHHhCcC--CCeEECCCCcHHHH-----HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC-------
Confidence            44677899999988  89999999999999     99999999999999998899999999999987532110       


Q ss_pred             CCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                                          .....++.++|.++++++++++++.+++++|.+.+.   +||+++|+++|+||++||+++
T Consensus       396 --------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~---~vV~~~g~liGvvt~~dll~~  452 (454)
T TIGR01137       396 --------------------ANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNSS---AIVTEEGKPIGVVTKIDLLSF  452 (454)
T ss_pred             --------------------CCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHCCe---eEEEECCEEEEEEEHHHHHHh
Confidence                                112347889999989999999999999999987542   445447999999999999987


Q ss_pred             H
Q 025613          238 A  238 (250)
Q Consensus       238 l  238 (250)
                      +
T Consensus       453 l  453 (454)
T TIGR01137       453 L  453 (454)
T ss_pred             h
Confidence            5

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=2.3e-13  Score=100.61  Aligned_cols=104  Identities=39%  Similarity=0.648  Sum_probs=90.7

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++.++.++.++     ++.|.+.++..+||++++|+++|+++..++...                            
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~----------------------------   48 (106)
T cd04638           2 NVVYVTLPGTRDDV-----LELLKEYKVSGVPVVKKSGELVGIITRKDLLRN----------------------------   48 (106)
T ss_pred             CcEEECCCCCHHHH-----HHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc----------------------------
Confidence            46778889999999     999998888999999988999999999999742                            


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                           ....++.++|..++.++.+++++.++++.|.+.+.+.+||++ +|+++|+||.+|+++
T Consensus        49 -----~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          49 -----PEEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             -----cccchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence                 012346777888899999999999999999999999999998 579999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.51  E-value=2e-13  Score=102.87  Aligned_cols=113  Identities=29%  Similarity=0.449  Sum_probs=91.9

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcC-CCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV  172 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~-~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (250)
                      +++++++++++.++     ++.|...+ +..+||+|+ |+++|+|+..|+.++....                |.     
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~----------------~~-----   54 (119)
T cd04598           2 PAPTVSPDTTVNDV-----LERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTP----------------YG-----   54 (119)
T ss_pred             CcCccCCCCcHHHH-----HHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhch----------------hh-----
Confidence            46788999999999     99998876 889999998 9999999999998642210                00     


Q ss_pred             HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCC---EEEEEcCCCcEEEEEehHHHHH
Q 025613          173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR---RLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                      .   ......++.++|.++++++.+++++.+++..|.+.+..   ..+|++++|+++|+||..|+++
T Consensus        55 ~---~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          55 R---ALYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             H---HHHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            0   01134578899999999999999999999999988864   3468887899999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=2.5e-13  Score=106.59  Aligned_cols=133  Identities=34%  Similarity=0.550  Sum_probs=98.4

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCC--CCCCCCCCCC----c--ccc
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS--GRADNSMFPE----V--DST  165 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~--~~~~~~~~~~----~--~~~  165 (250)
                      +++++++++++.++     ++.|.+.++..+||+|+ |+++|+++..|+.+++.....  ....+.....    +  .-.
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (143)
T cd04634           2 NPITCNADDTISDA-----ARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFIN   75 (143)
T ss_pred             CcEEecCCCCHHHH-----HHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheee
Confidence            57789999999999     99999999999999997 999999999999876532210  0000000000    0  011


Q ss_pred             hhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          166 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                      |+   +...........++.++|.++++++.+++++.+++..|.+.+...+||+++ |+++|+||.+|+++
T Consensus        76 ~~---~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          76 WE---ETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             hH---HHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            21   111111122345788899999999999999999999999999999999996 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.48  E-value=8.4e-13  Score=98.92  Aligned_cols=108  Identities=44%  Similarity=0.662  Sum_probs=94.1

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      .++++.++.++.++     ...|.++++..+||++. ++++|++|.+|+.++....+                       
T Consensus         8 ~~~~v~~~~~~~~a-----~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~-----------------------   58 (117)
T COG0517           8 DVITVKPDTSVRDA-----LLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGG-----------------------   58 (117)
T ss_pred             CCEEECCCCcHHHH-----HHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccC-----------------------
Confidence            78999999999999     99999999999999984 37999999999998643221                       


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHH-cCCCEEEEEcCCC-cEEEEEehHHHH
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLE-TKYRRLPVVDADG-KLVGIITRGNVV  235 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVVd~~g-~~vGiIt~~Dil  235 (250)
                           ....++.++|..+++++.+++++.++.+.|.+ .+++.+||+++++ +++|++|+.|++
T Consensus        59 -----~~~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          59 -----KRLLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             -----CccccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                 01116899999889999999999999999999 6999999999875 999999999974

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.44  E-value=5.7e-13  Score=122.36  Aligned_cols=124  Identities=35%  Similarity=0.450  Sum_probs=111.9

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHc-----CCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD  155 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~-----~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~  155 (250)
                      ..-+++.+|+.  +++.++++.|+.++     +..+++.     .+..++|+|.++++.|+|+.++|+..          
T Consensus       130 ~e~taG~~Mt~--e~v~l~~~~Tv~~a-----l~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a----------  192 (451)
T COG2239         130 PEDTAGRIMTT--EFVTLPEDVTVDEA-----LDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA----------  192 (451)
T ss_pred             Chhhhhcccee--eeEEeccCcCHHHH-----HHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC----------
Confidence            34479999999  99999999999999     9999853     35789999999999999999999942          


Q ss_pred             CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613          156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  235 (250)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil  235 (250)
                                             .....+.++|.+.+++|.+++..+++++.|++++.-.+||||++++++|+||..|++
T Consensus       193 -----------------------~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDii  249 (451)
T COG2239         193 -----------------------EPDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDII  249 (451)
T ss_pred             -----------------------CcHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHH
Confidence                                   356789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhh
Q 025613          236 RAALQIKHA  244 (250)
Q Consensus       236 ~~l~~~~~~  244 (250)
                      ..+.+...+
T Consensus       250 dvi~eEa~e  258 (451)
T COG2239         250 DVIEEEATE  258 (451)
T ss_pred             HHHHHHHHH
Confidence            998887654

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=99.44  E-value=2e-13  Score=126.31  Aligned_cols=173  Identities=24%  Similarity=0.288  Sum_probs=134.2

Q ss_pred             hcCCeeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC
Q 025613           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD  130 (250)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~  130 (250)
                      .....+...++-|++.++       .+..+++++++++|.+  +++.++..+.+..+     .+.++.+.+++|||+|+.
T Consensus       557 giYd~~i~LkgvP~Le~~-------pe~~mr~L~a~ev~~~--pvi~l~~~ekV~~I-----v~vLk~t~HngFPVvd~~  622 (762)
T KOG0474|consen  557 GIYDIIIQLKGVPFLEWE-------PEPYMRNLTAGEVMSK--PVICLNRVEKVAVI-----VDVLKSTNHNGFPVVDEP  622 (762)
T ss_pred             hhHHHhhhccCCccccCC-------CchHhhhhhHhhhccC--CeEEEechhhHHHH-----HHHHHhcCcCCCccccCC
Confidence            333467778889999988       4778889999999999  99999999999999     999999999999999852


Q ss_pred             -----CcEEEEEehHHHHhhhhccCCC---CC-------CCCCCCCcccchhchHHHHHH-HhccCCCcccccccCCCeE
Q 025613          131 -----WKLVGLVSDYDLLALDSISGSG---RA-------DNSMFPEVDSTWKTFNEVQKL-LSKTNGKMVGDLMTPAPVV  194 (250)
Q Consensus       131 -----g~~~GiVt~~dL~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~im~~~~~~  194 (250)
                           +++.|+|-+..|...+...--.   ..       ....+.+..+..+.+++..-. .+...-.+++.+|++.|.+
T Consensus       623 ~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPyt  702 (762)
T KOG0474|consen  623 PSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYT  702 (762)
T ss_pred             CCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcc
Confidence                 5799999999998764432110   01       111111223333334443222 1234567899999999999


Q ss_pred             ecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          195 VRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       195 v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                      |.+++++..++.+|++.|.+++.||+..+.++|++|++|+..+
T Consensus       703 V~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  703 VPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY  745 (762)
T ss_pred             cCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence            9999999999999999999999999988889999999999865

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.43  E-value=5.2e-13  Score=117.39  Aligned_cols=134  Identities=22%  Similarity=0.240  Sum_probs=113.6

Q ss_pred             CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCC
Q 025613           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRAD  155 (250)
Q Consensus        77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~  155 (250)
                      .-.++.++|+|+|.++..+..++.+++.+++     .+.+....++.+|++.++ +.++|++..+|+++++...+     
T Consensus       194 vLDLe~~tV~DIMvpR~~i~~id~d~~~e~i-----v~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~-----  263 (423)
T COG4536         194 VLDLENLTVSDIMVPRNEIIGIDIDDPWEEI-----VRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN-----  263 (423)
T ss_pred             ccccccceeeeeeccccceeeecCCCCHHHH-----HHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC-----
Confidence            4577889999999999999999999999999     999999999999999865 67999999999998854221     


Q ss_pred             CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613          156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  235 (250)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil  235 (250)
                                            .....++..+. .+|.+|++.+++.+-+..|++++.+...||||.|.+.|+||.+||+
T Consensus       264 ----------------------~~~k~d~~~~a-~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIl  320 (423)
T COG4536         264 ----------------------EFTKEDILRAA-DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDIL  320 (423)
T ss_pred             ----------------------cccHhHHHHHh-cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHH
Confidence                                  01122233333 4588999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhh
Q 025613          236 RAALQIKH  243 (250)
Q Consensus       236 ~~l~~~~~  243 (250)
                      +.+.....
T Consensus       321 EEIVGdft  328 (423)
T COG4536         321 EEIVGDFT  328 (423)
T ss_pred             HHHhcccc
Confidence            99876554

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.34  E-value=1.6e-12  Score=107.89  Aligned_cols=131  Identities=21%  Similarity=0.345  Sum_probs=112.8

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNS  157 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~  157 (250)
                      ....++|+|+|.++.+..+++.+.++.++     +..+.+..++.|||+.++ ..+.|++..+||+.++..         
T Consensus        63 ~iadl~vrDiMIPRSQM~~l~~~~~l~~~-----l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~---------  128 (293)
T COG4535          63 DIADLRVRDIMIPRSQMITLKRNQTLDEC-----LDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRS---------  128 (293)
T ss_pred             HHHHhhHhhhcccHHHheeccccCCHHHH-----HHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcC---------
Confidence            34567999999999999999999999999     999999999999999764 679999999999986431         


Q ss_pred             CCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                                          ......+.++.. +..+|+++-.+...++.|+....+.++|||+.|.+.|+||.+||++.
T Consensus       129 --------------------~~~~F~i~~lLR-Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEq  187 (293)
T COG4535         129 --------------------DAEPFDIKELLR-PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQ  187 (293)
T ss_pred             --------------------CcccccHHHhcc-cceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHH
Confidence                                122356777764 47889999999999999999999999999999999999999999999


Q ss_pred             HHhhhhh
Q 025613          238 ALQIKHA  244 (250)
Q Consensus       238 l~~~~~~  244 (250)
                      +....+.
T Consensus       188 IVGdIED  194 (293)
T COG4535         188 IVGDIED  194 (293)
T ss_pred             Hhccccc
Confidence            8765543

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.32  E-value=1.2e-11  Score=96.25  Aligned_cols=108  Identities=26%  Similarity=0.298  Sum_probs=80.1

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      ++.++.+++++.++     ++.|.++++..+||+|++|+++|+|+..||++++.........  ...+   -|       
T Consensus         2 ~~~~v~~~~~l~ea-----~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~--~~~~---~~-------   64 (133)
T cd04592           2 KYIKVSPTTTLKEA-----LNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQ--PEDE---TK-------   64 (133)
T ss_pred             CceEECCCCCHHHH-----HHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccc--cchh---hc-------
Confidence            57899999999999     9999999999999999989999999999999865321110000  0000   00       


Q ss_pred             HHHhccCCCccccc---------ccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 025613          174 KLLSKTNGKMVGDL---------MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD  222 (250)
Q Consensus       174 ~~~~~~~~~~v~~i---------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~  222 (250)
                          ......+.++         |..+++++++++++.+|++.|.+++++.+||+|++
T Consensus        65 ----~~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          65 ----QTNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             ----ccccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence                0011122333         45678999999999999999999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.27  E-value=2.1e-11  Score=80.44  Aligned_cols=56  Identities=50%  Similarity=0.869  Sum_probs=53.1

Q ss_pred             ccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       184 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      ++++|.++++++++++++.++++.|.+.+.+++||+|++|+++|+||.+||++++.
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            46789999999999999999999999999999999999999999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=99.14  E-value=1.5e-10  Score=102.87  Aligned_cols=186  Identities=26%  Similarity=0.358  Sum_probs=129.1

Q ss_pred             CeeeeccccccccccCCCCCCCCCCcccccccceecCCC---ChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCC
Q 025613            2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSR---PGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA   77 (250)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |-++||..+.|..--..+..+.+.  +..++.|++....   +-.+-.-.|..+.. -.....-.|...+...       
T Consensus        34 DfliLPg~idF~s~eVsL~t~ltr--~itl~tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v-------  104 (503)
T KOG2550|consen   34 DFLILPGFIDFASDEVSLQTKLTR--NITLNTPLVSSPMDTVTESEMAIAMALLGGIGFIHHNCTPEDQADMV-------  104 (503)
T ss_pred             ceeecccccccccccceeehhhhh--cccccCceeccCCcccchhHHHHHHHhcCCceeeecCCCHHHHHHHH-------
Confidence            556778777776554444444333  4445557665411   11223333444443 2222333343333321       


Q ss_pred             CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCC
Q 025613           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRA  154 (250)
Q Consensus        78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~  154 (250)
                      +....+..+-++    +++++.|+.++.++     ++....+++.++||.++   .++++|+||.+|+-..         
T Consensus       105 ~~vK~~~~g~~~----~p~v~sp~~tvg~v-----~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~---------  166 (503)
T KOG2550|consen  105 RRVKNYENGFIN----NPIVISPTTTVGEV-----KEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL---------  166 (503)
T ss_pred             HHHHHhhccccc----CCcccCCcccchhh-----hhhcccccccccccccCCcccceeEEEEehhhhhhh---------
Confidence            111222222222    46889999999999     99999999999999974   3779999999999743         


Q ss_pred             CCCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHH
Q 025613          155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV  234 (250)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Di  234 (250)
                                             ......+.++|++++++.+.+.++.++-+++.+.+...+||||++|.++.+|++.||
T Consensus       167 -----------------------~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl  223 (503)
T KOG2550|consen  167 -----------------------EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDL  223 (503)
T ss_pred             -----------------------hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhh
Confidence                                   345678999999999999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 025613          235 VRA  237 (250)
Q Consensus       235 l~~  237 (250)
                      .+.
T Consensus       224 ~k~  226 (503)
T KOG2550|consen  224 MKN  226 (503)
T ss_pred             hhh
Confidence            864

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.06  E-value=2.2e-09  Score=98.19  Aligned_cols=122  Identities=26%  Similarity=0.295  Sum_probs=97.7

Q ss_pred             CceeccccccCCc-eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           82 VYTVGDFMTTKEE-LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        82 ~~~v~~~m~~~~~-~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      .+++.++|..... .+...++.+..++     +..|...+...++|+|+++++.|+|+.+++.+...             
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------  334 (400)
T PRK10070        273 VFSAKDIARRTPNGLIRKTPGFGPRSA-----LKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT-------------  334 (400)
T ss_pred             ccchhhhhhcCcccccccCCCCCHHHH-----HHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh-------------
Confidence            3566677754111 1223355677788     99999999999999999999999999999986421             


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                         ....+.+.+.....++++++++.+++..+.+.... +||||++|+++|+||+.++++.+..
T Consensus       335 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        335 -------------------QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             -------------------cCCchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence                               12356777778888999999999999999998776 9999999999999999999999865


Q ss_pred             h
Q 025613          241 I  241 (250)
Q Consensus       241 ~  241 (250)
                      .
T Consensus       395 ~  395 (400)
T PRK10070        395 E  395 (400)
T ss_pred             c
Confidence            3

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.05  E-value=2.7e-09  Score=96.38  Aligned_cols=109  Identities=28%  Similarity=0.405  Sum_probs=92.9

Q ss_pred             eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHH
Q 025613           95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK  174 (250)
Q Consensus        95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (250)
                      .....++.+..++     ++.|...+.....|+|+++++.|+|+.+++..+..                           
T Consensus       252 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------------------  299 (363)
T TIGR01186       252 PITKTADKGPRSA-----LQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK---------------------------  299 (363)
T ss_pred             ceeecCCCCHHHH-----HHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh---------------------------
Confidence            3445566677888     99999989889999999999999999999986421                           


Q ss_pred             HHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          175 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       175 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                           ....+.+.|.....++++++++.+++..|.+.+.. +||+|++|+++|+||+.++++.+...
T Consensus       300 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       300 -----KAQGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             -----cCCchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence                 12357777888888999999999999999999998 99999999999999999999998654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.01  E-value=6e-10  Score=73.38  Aligned_cols=55  Identities=45%  Similarity=0.685  Sum_probs=51.6

Q ss_pred             eccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613           85 VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus        85 v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      |+++|++  +++.+++++++.++     ++.|.++++.++||+|++|+++|+|+.+||++++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEA-----LEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHH-----HHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHHHH-----HHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            4688998  89999999999999     9999999999999999999999999999999763

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.95  E-value=5.3e-09  Score=94.94  Aligned_cols=125  Identities=29%  Similarity=0.416  Sum_probs=96.9

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ  173 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (250)
                      .+..+..++++.+|     ++.|.+++++.+||+++.|+.+|+++..|+.........        ..++.  ....+  
T Consensus       238 ~i~~i~~~~~v~~a-----l~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~--------~~~~~--~~l~~--  300 (381)
T KOG1764|consen  238 NIASISEDTPVIEA-----LKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTY--------NNLDL--SCLSE--  300 (381)
T ss_pred             hheeecCCCcHHHH-----HHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCcc--------Cccch--hHHHH--
Confidence            48889999999999     999999999999999999999999999999875332111        00000  00000  


Q ss_pred             HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613          174 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       174 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                             .......-...+++++++.++.+++..|..++++++.|||++|.++|+||..|++.++....
T Consensus       301 -------~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p  362 (381)
T KOG1764|consen  301 -------ALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTP  362 (381)
T ss_pred             -------HhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCc
Confidence                   01111122234799999999999999999999999999999999999999999999987653

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.90  E-value=5.6e-09  Score=97.34  Aligned_cols=161  Identities=19%  Similarity=0.250  Sum_probs=109.0

Q ss_pred             eeeeeCCCcccccccccccCCCCCCCCCceeccccccC---CceeEeCCC-CchhcccchhHHHHHHHcCCCeeEEEe--
Q 025613           55 RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTK---EELHVVKPT-TTVDEAFVPTALEILVEKRITGFPVID--  128 (250)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~---~~~~~v~~~-~~v~~a~~~~~~~~~~~~~~~~~~Vvd--  128 (250)
                      +....++-|+++...         .....-..++|.+.   +.+.+++.+ +++.+.     ...|.++.+++|||+-  
T Consensus       524 a~I~~ng~P~l~~k~---------e~~~t~~~~v~~p~~~~~~L~~i~~~s~tl~~l-----e~~~~~t~~sgfpvvl~~  589 (696)
T KOG0475|consen  524 AHIELNGYPFLDSKS---------EFSSTLAIPVMEPCRSESCLIVITQDSMTLEDL-----ESLMEDTDFSGFPVVLSE  589 (696)
T ss_pred             HHHHhcCCCCccccc---------ccccchhhhhhchhcCchhheeccccceeHHHH-----HHHHhhcccCCceEEEcc
Confidence            555667777775441         11122334455442   235566655 889999     9999999999999984  


Q ss_pred             CCCcEEEEEehHHHHhhhhccCC----CCCCCCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHH
Q 025613          129 DDWKLVGLVSDYDLLALDSISGS----GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA  204 (250)
Q Consensus       129 ~~g~~~GiVt~~dL~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a  204 (250)
                      ++.+++|+|.++|+.-.......    ...+...+.+-.+..        .........+.++|+..|+++...+|.+.+
T Consensus       590 ~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~--------~~~~~~~~~lk~il~~tp~tv~d~tp~~~v  661 (696)
T KOG0475|consen  590 DSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSA--------VAGIPSRLDLKDILDMTPFTVTDLTPMETV  661 (696)
T ss_pred             ccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccc--------cCCCCCCcCceeeccCCcccccccCcHHHH
Confidence            34779999999999754332111    011111111100000        001234567899999999999999999999


Q ss_pred             HHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          205 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       205 ~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                      +.+|++.+.+.+.|.. +|++.|+||++|++++.
T Consensus       662 ~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  662 VDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT  694 (696)
T ss_pred             HHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence            9999999998887755 89999999999999874

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.64  E-value=1.9e-08  Score=93.51  Aligned_cols=163  Identities=11%  Similarity=0.149  Sum_probs=115.1

Q ss_pred             cccceecCCCChhHHHHHhhhcC------Ceee--eeCCCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCC
Q 025613           31 LQLPCLLLSRPGCRVFSVLATSS------DRVS--ALRRSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP  100 (250)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~------~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~  100 (250)
                      ..+.++..+.+..++.+.+.+..      ..+.  ...+...  ...+ .+  .   ......+++++|++  +++++++
T Consensus       139 ~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~-dL--l---~a~~~~~v~~im~~--~~~~v~~  210 (449)
T TIGR00400       139 IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIR-DL--I---LAKPEEILSSIMRS--SVFSIVG  210 (449)
T ss_pred             CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHH-HH--h---cCCCCCcHHHHhCC--CCeeECC
Confidence            44567888999999998886411      1111  1111110  1000 00  0   01133479999998  8899999


Q ss_pred             CCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccC
Q 025613          101 TTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN  180 (250)
Q Consensus       101 ~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (250)
                      ++++.++     ++.|.++++..+||+|++|+++|+||.+|+.+.+.                                 
T Consensus       211 ~~~~~ea-----l~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~---------------------------------  252 (449)
T TIGR00400       211 VNDQEEV-----ARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ---------------------------------  252 (449)
T ss_pred             CCCHHHH-----HHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHH---------------------------------
Confidence            9999999     99999999999999999999999999999997632                                 


Q ss_pred             CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhhh
Q 025613          181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA  244 (250)
Q Consensus       181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~~  244 (250)
                      ...-+++|....++..+++.+.++...|.+++..+++|.    .+.|++| ..++..+.+...+
T Consensus       253 ~~~~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~~~l~~  311 (449)
T TIGR00400       253 SEATEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNYEDLLLS  311 (449)
T ss_pred             hhhHHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHHHHHHHH
Confidence            112356676655555567888999999999999888885    5778888 7788776655443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.62  E-value=1.4e-07  Score=70.17  Aligned_cols=103  Identities=18%  Similarity=0.177  Sum_probs=71.2

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeee--eCCCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSA--LRRSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      +.++..+.+..++...+..... .++.  ..+.+.  .... .+... ........++.++|..  ++.++++++++.++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~-dl~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a   78 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLS-DLLEI-GPNDYETLKVCEVYIV--PVPIVYCDSKVTDL   78 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHH-HHHhh-ccccccccChhheeec--CCcEECCCCcHHHH
Confidence            4466778888988888865543 2222  222211  1111 00000 0111123468899987  78999999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                           ++.|.+++...+||+|++|+++|+||.+|+++
T Consensus        79 -----l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          79 -----LRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             -----HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence                 99999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.56  E-value=9.9e-08  Score=82.03  Aligned_cols=65  Identities=31%  Similarity=0.530  Sum_probs=59.1

Q ss_pred             HHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          173 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       173 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                      +.+.....+..-.++|++++++++.++++.+|..+|.+++++.+||+|++.+++||||+.|+++.
T Consensus       236 qa~~R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~  300 (382)
T COG3448         236 QALRRRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKH  300 (382)
T ss_pred             HHHHHHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhc
Confidence            34444567788999999999999999999999999999999999999999999999999999984

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.52  E-value=1.9e-07  Score=78.83  Aligned_cols=62  Identities=37%  Similarity=0.526  Sum_probs=57.6

Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          179 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       179 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                      .+..++.++|+++++++.+++++.+|..+|.+++++.+||+| +++++|++|..||..++.+-
T Consensus       169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd-~dk~vGiit~~dI~~aia~g  230 (294)
T COG2524         169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD-DDKIVGIITLSDIAKAIANG  230 (294)
T ss_pred             cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec-CCceEEEEEHHHHHHHHHcC
Confidence            356789999999999999999999999999999999999999 56999999999999999873

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.48  E-value=3.2e-07  Score=68.99  Aligned_cols=55  Identities=38%  Similarity=0.556  Sum_probs=51.3

Q ss_pred             CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          182 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       182 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                      .++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||..||.+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            5689999999999999999999999999999999999998899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.45  E-value=5.2e-08  Score=92.79  Aligned_cols=143  Identities=21%  Similarity=0.315  Sum_probs=96.9

Q ss_pred             CCceeccccc-cCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCC
Q 025613           81 GVYTVGDFMT-TKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  159 (250)
Q Consensus        81 ~~~~v~~~m~-~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~  159 (250)
                      ...+++++|+ +  +++++++++++.++     .+.|.++++..+||+|++|+++|+|+..|+.+.....- -.-+....
T Consensus       244 ~~~~V~~iM~~~--~~~~~~~~~~~~~~-----~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~-iLVD~~e~  315 (546)
T PRK14869        244 QSIPVSYIMTTE--DLVTFSKDDYLEDV-----KEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKV-ILVDHNEK  315 (546)
T ss_pred             cCCCHHHhccCC--CcEEECCCCcHHHH-----HHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCce-EEEcCccc
Confidence            4568999999 6  89999999999999     99999999999999999999999999999997421100 00000000


Q ss_pred             CCcccchhchHHHHHHHhccCCCcccccccCCCeEe---cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVV---RETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v---~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                      ...   ...+.+ ....+-....+++++|...|+.+   +..++...+.++|.+.++...|++. ..-+.||++-.+.++
T Consensus       316 ~q~---~~~~~~-~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~  390 (546)
T PRK14869        316 SQA---VEGIEE-AEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFK  390 (546)
T ss_pred             ccc---ccchhh-ceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCcc
Confidence            000   000000 00000112335667888777665   4467788899999999998888776 446778887777664

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.44  E-value=5.4e-07  Score=67.29  Aligned_cols=105  Identities=14%  Similarity=0.214  Sum_probs=72.9

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeee--CCCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSAL--RRSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~  106 (250)
                      +-++..+.++.++...+.+... .++..  .+.+.  .. .+...............+++++|..  +++++.+++++.+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~   80 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLLHD   80 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCHHH
Confidence            3456778889998888876654 33322  22211  11 1110000000112334578899988  8899999999999


Q ss_pred             ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      +     ++.|.+++...+||+|++|+++|+|+.+|++.
T Consensus        81 a-----~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          81 V-----WQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             H-----HHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            9     99999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.42  E-value=6.1e-07  Score=70.64  Aligned_cols=79  Identities=25%  Similarity=0.396  Sum_probs=64.1

Q ss_pred             ccchhchHHHHHHHhc--cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          163 DSTWKTFNEVQKLLSK--TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~--~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      ++.+.+++.+....+.  ........+|+.+.+.+++++++.+++.+|.++|+..+||+++ |+++|-||..+|.+...+
T Consensus        44 dPrlSt~k~Il~aL~e~e~~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le  122 (187)
T COG3620          44 DPRLSTVKRILEALEEAEKTRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLE  122 (187)
T ss_pred             CccHHHHHHHHHHHHHhhcceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhc
Confidence            3444445554443332  2446678899999999999999999999999999999999994 999999999999999866


Q ss_pred             hh
Q 025613          241 IK  242 (250)
Q Consensus       241 ~~  242 (250)
                      ..
T Consensus       123 ~~  124 (187)
T COG3620         123 GM  124 (187)
T ss_pred             cc
Confidence            54

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.38  E-value=2.9e-06  Score=79.72  Aligned_cols=162  Identities=24%  Similarity=0.302  Sum_probs=103.1

Q ss_pred             cccceecCCCChhHHHHHhhhcCC-eeeeeCCCc-----ccccccccccCCCCCCCCCceeccccc-cCCceeEeCCCCc
Q 025613           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS-----AVFASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPTTT  103 (250)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~m~-~~~~~~~v~~~~~  103 (250)
                      ..+.++..+.++.++...+.+... .++...+..     +...+..  .    ......++.++|+ .  ++++++++++
T Consensus        95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~--~----~~~~~~~V~dim~~~--~~v~v~~~~s  166 (486)
T PRK05567         95 TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVR--F----ETDLSQPVSEVMTKE--RLVTVPEGTT  166 (486)
T ss_pred             CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhh--h----cccCCCcHHHHcCCC--CCEEECCCCC
Confidence            456677888899998888876654 444333211     0111100  0    0112346889997 4  7899999999


Q ss_pred             hhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccCCCc
Q 025613          104 VDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM  183 (250)
Q Consensus       104 v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (250)
                      +.++     ++.|.++++..+||+|++|+++|+||..||++.......                       .........
T Consensus       167 l~ea-----l~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a-----------------------~~d~~g~l~  218 (486)
T PRK05567        167 LEEA-----LELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNA-----------------------CKDEQGRLR  218 (486)
T ss_pred             HHHH-----HHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCc-----------------------ccccCCCEE
Confidence            9999     999999999999999999999999999999975311000                       000111233


Q ss_pred             ccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHH
Q 025613          184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVR  236 (250)
Q Consensus       184 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~~vGiIt~~Dil~  236 (250)
                      +...|..++      .+ .+.++.|.+.+++.+ |+|. +|+..|+++.-+.++
T Consensus       219 V~aai~~~~------~~-~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~  264 (486)
T PRK05567        219 VGAAVGVGA------DN-EERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIK  264 (486)
T ss_pred             EEeecccCc------ch-HHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHH
Confidence            455554432      12 667777788999854 5653 577666554444433

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.37  E-value=1.7e-06  Score=63.71  Aligned_cols=98  Identities=21%  Similarity=0.254  Sum_probs=71.7

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCC--Ccc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR--SSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~  106 (250)
                      +.++..+.+..++...+.+... .++...+  .+.   ...+.       .......+++++|..  ++.++++++++.+
T Consensus         4 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l-------~~~~~~~~v~~~~~~--~~~~v~~~~~l~~   74 (108)
T cd04596           4 TGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDV-------AGKDPDTTIEKVMTK--NPITVNPKTSVAS   74 (108)
T ss_pred             cEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHH-------hcccccccHHHHhcC--CCeEECCCCCHHH
Confidence            4567788899998888876653 3333322  111   11110       011124468899987  7899999999999


Q ss_pred             ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      +     ++.|.+++...+||++++|+++|+++..|+.+
T Consensus        75 ~-----~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          75 V-----AHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             H-----HHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            9     99999999999999998899999999999974

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.33  E-value=1.1e-06  Score=66.03  Aligned_cols=83  Identities=22%  Similarity=0.231  Sum_probs=61.8

Q ss_pred             eeeeeCCCcccccccccccCCC--CCCCCC--ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC
Q 025613           55 RVSALRRSSAVFASGTLTANSA--APSSGV--YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD  130 (250)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~  130 (250)
                      +...+.+++....++.+.....  ...+..  .+++++|..  ++.++++++++.++     ++.|.+.++..+||+|++
T Consensus        26 ~~~~~~g~~n~e~~~vl~~~~~~~p~ll~~v~~~v~dim~~--~~~~v~~~~~l~~a-----~~~~~~~~~~~lpVvd~~   98 (113)
T cd04597          26 VTAARLGEPNPQTRYVLEYLGIEPPILLADVHPRVRDVINR--KPVTARPNDPLREA-----LNLMHEHNIRTLPVVDDD   98 (113)
T ss_pred             eeehhcCCCCHHHHHHHHHcCCCCchhhcchhhhHHHhcCC--CCCEECCcCcHHHH-----HHHHHHcCCCEEEEECCC
Confidence            4455555555555433322110  111222  679999988  88999999999999     999999999999999988


Q ss_pred             CcEEEEEehHHHHh
Q 025613          131 WKLVGLVSDYDLLA  144 (250)
Q Consensus       131 g~~~GiVt~~dL~~  144 (250)
                      |+++|+|+..||..
T Consensus        99 ~~l~Givt~~dl~~  112 (113)
T cd04597          99 GTPAGIITLLDLAE  112 (113)
T ss_pred             CeEEEEEEHHHhhc
Confidence            99999999999973

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.33  E-value=2.5e-06  Score=62.46  Aligned_cols=94  Identities=19%  Similarity=0.281  Sum_probs=67.3

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccch
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVP  110 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~  110 (250)
                      ++..+..+.+..++...+.+... .++...+.     +        ....+-++..|+.... .+.++.+++++.++   
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----~--------~~~~Givt~~Dl~~~~-~~~~v~~~~~l~~a---   64 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR-----K--------QQFVGMLTITDFILIL-RLVSIHPERSLFDA---   64 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC-----C--------CEEEEEEEHHHHhhhe-eeEEeCCCCcHHHH---
Confidence            34567788999999988866653 33322210     0        1122333445544331 16789999999999   


Q ss_pred             hHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHh
Q 025613          111 TALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA  144 (250)
Q Consensus       111 ~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~  144 (250)
                        ++.|.++++..+||+|++ |+++|+|+.+|++.
T Consensus        65 --~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          65 --ALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             --HHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence              999999999999999987 99999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=1.8e-06  Score=64.82  Aligned_cols=107  Identities=16%  Similarity=0.185  Sum_probs=70.8

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eee--eeCCCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVS--ALRRSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      +.++..+.++.++...|..+.. ..+  ..++...  ...................+++++|....+++++++++++.++
T Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   82 (118)
T cd04617           3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLEA   82 (118)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHHH
Confidence            4567778888888888755443 222  2222211  1111000000011223355677888732258899999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCC---CcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~---g~~~GiVt~~dL~~  144 (250)
                           ++.|.++++..+||+|++   |+++|+||..|+.+
T Consensus        83 -----~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          83 -----AKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             -----HHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence                 999999999999999976   69999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=2.6e-06  Score=63.38  Aligned_cols=104  Identities=15%  Similarity=0.234  Sum_probs=69.6

Q ss_pred             cceecCCCChhHHHHHhhhcC-C-eeeeeC-CCc---ccccccccccCCCCCCCCCceeccccccCCceeEeCCC--Cch
Q 025613           33 LPCLLLSRPGCRVFSVLATSS-D-RVSALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPT--TTV  104 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~-~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~--~~v  104 (250)
                      .+++..+.+..++...+.... . .++... +..   +...+. .............++.++|..  +++++.++  +++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl-~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~~~l   79 (115)
T cd04620           3 PLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDI-VRLTAIGKDLSDLPIGEVMTQ--PVVTLQESEIQDI   79 (115)
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHH-HHHHhcCCCccccCHHHhcCC--CcEEEecccccCH
Confidence            345677888888888886554 2 233222 211   111110 000000111223568899987  78888877  688


Q ss_pred             hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      .++     ++.|.+++...+||+|++|+++|+|+.+|+++
T Consensus        80 ~~a-----~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          80 FTA-----LSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             HHH-----HHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            999     99999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.26  E-value=3.5e-06  Score=63.41  Aligned_cols=104  Identities=23%  Similarity=0.325  Sum_probs=72.2

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCC--Ccc--cc-cccccccCCCCC----------CCCCceeccccccCCcee
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR--SSA--VF-ASGTLTANSAAP----------SSGVYTVGDFMTTKEELH   96 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~~--~~-~~~~~~~~~~~~----------~~~~~~v~~~m~~~~~~~   96 (250)
                      ++++..+.++.++...+.+... .++...+  .+.  .. .+. ........          .....+++++|..  .++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~   80 (124)
T cd04600           4 VVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDL-LRHARPDGRRPLRGRLRGRDKPETVGDIMSP--PVV   80 (124)
T ss_pred             cEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHH-HhhhcccccchhhhhhhcccccccHHHhccC--CCe
Confidence            4567778888888888765543 3333322  211  11 110 00000000          1234478899987  899


Q ss_pred             EeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           97 VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        97 ~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ++++++++.++     ++.|.+++...+||+|++|+++|+|+..|+++
T Consensus        81 ~~~~~~~l~~~-----~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          81 TVRPDTPIAEL-----VPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             eeCCCCcHHHH-----HHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            99999999999     99999999999999998899999999999974

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.24  E-value=4.9e-06  Score=51.18  Aligned_cols=47  Identities=51%  Similarity=0.784  Sum_probs=43.0

Q ss_pred             CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       192 ~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                      ++++.+++++.++++.|.+.+...+||++++++++|+++..++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            57889999999999999999999999999878999999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=4.1e-06  Score=61.97  Aligned_cols=103  Identities=18%  Similarity=0.264  Sum_probs=71.5

Q ss_pred             ceecCCCChhHHHHHhhhcCC-eeeeeCC--Ccc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           34 PCLLLSRPGCRVFSVLATSSD-RVSALRR--SSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      .++..+.+..+++..+.+... .++...+  .+.   ...+...... ........++.++|..  ++.++++++++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~   80 (113)
T cd04615           4 SCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYAL-ESEELKDAKVREVMNS--PVITIDANDSIAKA   80 (113)
T ss_pred             EEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhh-hhhhhcCCcHHHhccC--CceEECCCCcHHHH
Confidence            456677888888887766554 3333322  221   1111100000 1222344578899987  78999999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                           ++.|.+++...+||++++|+++|+|+..|+.+
T Consensus        81 -----~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          81 -----RWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             -----HHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence                 99999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.23  E-value=1.6e-05  Score=74.78  Aligned_cols=103  Identities=22%  Similarity=0.207  Sum_probs=75.8

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCC-----C---cccccccccccCCCCCCCCCceeccccccCCceeEeCCCCc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR-----S---SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~  103 (250)
                      .+.+..+.++.++...|.+... .++...+     .   .+...+...     .......+++++|++.+++++++++++
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~-----~~~~~~~~V~dIMt~~~~~itv~~d~~  181 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRI-----SRMSLDTKVKDFMTPFEKLVTANEGTT  181 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhc-----cccCCCCCHHHHhCCCCCeEEECCCCc
Confidence            3577888999999988876654 3332221     0   011111100     112345679999996557899999999


Q ss_pred             hhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          104 VDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       104 v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      +.+|     ++.|.++++..+||+|++|+++|+||.+|+++.
T Consensus       182 l~eA-----l~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        182 LKEA-----NDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             HHHH-----HHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence            9999     999999999999999988999999999999974

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=4.5e-06  Score=62.09  Aligned_cols=104  Identities=13%  Similarity=0.162  Sum_probs=71.1

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC---CCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR---RSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~---~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      ++.+..+.+..++...+.++.. .++...   +...  .. .+...............++.++|..  +++++++++++.
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~   80 (114)
T cd04630           3 VVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDMDIK   80 (114)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCCCHH
Confidence            4556777888888888866554 333222   1111  11 1110000000112234578899987  799999999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ++     ++.|.+++...+||+|+ |+++|+|+..|+.+
T Consensus        81 ~~-----~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          81 YC-----ARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             HH-----HHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            99     99999999999999997 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.22  E-value=5.5e-06  Score=62.28  Aligned_cols=49  Identities=33%  Similarity=0.491  Sum_probs=45.2

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      ++.++++++++.+|++.|.+.+.+.+||+|++|+++|++|.+|++.+..
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~   50 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK   50 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence            5688999999999999999999999999998899999999999997654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.21  E-value=6.7e-06  Score=60.57  Aligned_cols=104  Identities=24%  Similarity=0.258  Sum_probs=70.8

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~  106 (250)
                      +.++..+.++.++...+..... .++...  +.+.   ...+...............+++++|..  ++..+.+++++.+
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~   80 (113)
T cd04623           3 VITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTVDE   80 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcHHH
Confidence            3456678888888888765543 344332  2211   111110000000112224578899987  7899999999999


Q ss_pred             ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      +     ++.|.+.+...+||+++ |+++|+|+..|+.+
T Consensus        81 ~-----l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          81 A-----MALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             H-----HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            9     99999999999999997 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.21  E-value=5.5e-06  Score=61.22  Aligned_cols=105  Identities=22%  Similarity=0.251  Sum_probs=71.6

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      .++.+..+.+..++...+..... .++...  +.+.   ...+...... ........++.++|.+  +..++.+++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~~~   79 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALE-KGLDILTLPVADVMTR--NPKTIDPDALAA   79 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHh-ccCccccCCHHHhhcc--CCeEECCCCcHH
Confidence            34566778888888887765443 333322  2221   1111000000 0112223468899988  788999999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ++     ++.|.+++...+||++++|+++|+|+..||++
T Consensus        80 ~~-----~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          80 EA-----LELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HH-----HHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            99     99999999999999998899999999999974

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.20  E-value=7.3e-06  Score=60.43  Aligned_cols=57  Identities=23%  Similarity=0.445  Sum_probs=51.6

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      ..+++++|.+  ++..+.+++++.++     ++.|.+++...+||++++|+++|+|+..||++.
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~~~-----~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQEEV-----ARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHHHH-----HHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            4568899987  78999999999999     999999999999999988999999999999853

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.19  E-value=7.3e-06  Score=63.61  Aligned_cols=50  Identities=36%  Similarity=0.474  Sum_probs=46.3

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      +++++.+++++.+|++.|.+.+...+||+|++|+++|+||..|+++++..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~   51 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT   51 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence            57899999999999999999999999999988999999999999998764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.19  E-value=7.9e-06  Score=60.58  Aligned_cols=100  Identities=18%  Similarity=0.153  Sum_probs=69.0

Q ss_pred             eecCCCChhHHHHHhhhcCC-eeeee--CCCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhccc
Q 025613           35 CLLLSRPGCRVFSVLATSSD-RVSAL--RRSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAF  108 (250)
Q Consensus        35 ~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~  108 (250)
                      .+..+.++.++...+..... .++..  .+.+.  .. .+......  .......++.++|.+  .+.++++++++.++ 
T Consensus         6 ~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~--~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~-   80 (113)
T cd04607           6 LVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL--KGLSLDDPVSEVMNR--NPITAKVGSSREEI-   80 (113)
T ss_pred             EECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh--cCCCcCCCHHHhhcC--CCEEEcCCCCHHHH-
Confidence            45677788888888865543 23322  22211  11 11000000  111123468899987  78899999999999 


Q ss_pred             chhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHH
Q 025613          109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  143 (250)
Q Consensus       109 ~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~  143 (250)
                          ++.|.+++...+||++++|+++|+|+.+|++
T Consensus        81 ----~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  111 (113)
T cd04607          81 ----LALMRERSIRHLPILDEEGRVVGLATLDDLL  111 (113)
T ss_pred             ----HHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence                9999999999999999889999999999987

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.19  E-value=6.3e-06  Score=73.26  Aligned_cols=104  Identities=19%  Similarity=0.201  Sum_probs=74.8

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeee--CCCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSAL--RRSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~  106 (250)
                      ++.+..+.++.++...+..... .++..  ++.+.  .. .+......  .......+++++|++  +++++.+++++.+
T Consensus       209 ~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~--~~~~~~~~v~~im~~--~~~~v~~~~~l~~  284 (321)
T PRK11543        209 IPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV--GGGALTTPVNEAMTR--GGTTLQAQSRAID  284 (321)
T ss_pred             CcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh--CCCCcCCcHHHhcCC--CCEEECCCCCHHH
Confidence            6778889999999988866553 33322  22211  11 11100000  111223468899998  8899999999999


Q ss_pred             ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      +     ++.|.+++...+||+|++|+++|+|+..|+.++
T Consensus       285 a-----~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        285 A-----KEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             H-----HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            9     999999999999999988999999999999864

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.18  E-value=3.3e-06  Score=62.78  Aligned_cols=104  Identities=20%  Similarity=0.248  Sum_probs=69.2

Q ss_pred             cceecCCCChhHHHHHhhhcC-C-eeeee--CCCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           33 LPCLLLSRPGCRVFSVLATSS-D-RVSAL--RRSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~-~-~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      ++.+..+.++.++...+.... . .++..  .+.+.   ...+. ....  .......++.++|.+...++++.+++++.
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl-~~~~--~~~~~~~~v~~~~~~~~~~~~v~~~~~l~   79 (114)
T cd04801           3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADL-RAIP--TSQWAQTTVIQVMTPAAKLVTVLSEESLA   79 (114)
T ss_pred             cceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHH-HHHH--HhhccccchhhhhcccccceEECCCCcHH
Confidence            456777888888888765432 2 33322  22211   11110 0000  01112356888897532467899999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ++     ++.|.+++.+.+||+|++|+++|+|+.+|+.+
T Consensus        80 ~a-----~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          80 EV-----LKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HH-----HHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            99     99999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.18  E-value=3.7e-05  Score=72.04  Aligned_cols=103  Identities=21%  Similarity=0.221  Sum_probs=75.8

Q ss_pred             cccccceecCCCChhHHHHHhhhcCC-eeeeeCCC--c---ccccccccccCCCCCCCCCceeccccccCCceeEeCCCC
Q 025613           29 FALQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS--S---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT  102 (250)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~  102 (250)
                      +...+..+..+.++.++...|.+... .++...+.  +   +...+.    .   ......+++++|+.  +++++++++
T Consensus        95 Mi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL----~---~~~~~~~V~diMt~--~~itV~~d~  165 (479)
T PRK07807         95 VFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADC----A---GVDRFTQVRDVMST--DLVTLPAGT  165 (479)
T ss_pred             cccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHH----h---cCccCCCHHHhccC--CceEECCCC
Confidence            34456677889999999998876654 33322211  1   111110    0   00112468999998  899999999


Q ss_pred             chhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          103 TVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       103 ~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      ++.++     ++.|.++++..+||+|++|+++|+||..||++.
T Consensus       166 sL~eA-----l~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~  203 (479)
T PRK07807        166 DPREA-----FDLLEAARVKLAPVVDADGRLVGVLTRTGALRA  203 (479)
T ss_pred             cHHHH-----HHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence            99999     999999999999999988999999999999975

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.18  E-value=7.6e-06  Score=60.89  Aligned_cols=103  Identities=19%  Similarity=0.259  Sum_probs=69.6

Q ss_pred             ceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           34 PCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      +.+..+.+..++...+..... .++...  +...  .. .+... ...........+++++|..  +++++.+++++.++
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~-~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~   80 (115)
T cd04593           4 PVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLR-ALEADEAGEPSAVDEVATP--PLLTVHPDEPLAHA   80 (115)
T ss_pred             cEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHH-HHhcccccccccHHHhccC--CceEECCCCCHHHH
Confidence            456677888888888866543 333222  2211  11 11000 0000111223347788887  89999999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCC--CcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~--g~~~GiVt~~dL~~  144 (250)
                           ++.|.+++...+||+|++  |+++|+|+..|+.+
T Consensus        81 -----l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          81 -----LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             -----HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence                 999999999999999987  79999999999974

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.16  E-value=6.3e-06  Score=60.67  Aligned_cols=100  Identities=14%  Similarity=0.196  Sum_probs=69.4

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~  106 (250)
                      ++.+..+.+..++...+.+... .++...  +.+.   ...+. ....    ......+.++|..  ++..+++++++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l-~~~~----~~~~~~~~~~~~~--~~~~v~~~~~l~~   76 (110)
T cd04605           4 VVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDI-SKAV----ARDKKSVEDIMTR--NVITATPDEPIDV   76 (110)
T ss_pred             CEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHH-HHHH----hhCccCHHHhcCC--CCeEECCCCcHHH
Confidence            4456778888888887765543 333222  2211   11111 0000    0011247888877  7899999999999


Q ss_pred             ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      +     ++.|.+++...+||++++|+++|+|+..|+.+
T Consensus        77 ~-----~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          77 A-----ARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             H-----HHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            9     99999999999999998899999999999964

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.16  E-value=4.9e-06  Score=61.21  Aligned_cols=103  Identities=20%  Similarity=0.192  Sum_probs=71.6

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCC-Ccc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR-SSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      ++.+..+.++.++.+.+.+... .++...+ .+.   ...+......  .......+++++|..  +++.+++++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~--~~~~~~~~v~~~~~~--~~~~~~~~~~l~~~   78 (111)
T cd04611           3 ILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLA--SGPDLQTPVGEVMSS--PLLTVPADTSLYDA   78 (111)
T ss_pred             ceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHh--cCCCCCcCHHHhcCC--CceEECCCCCHHHH
Confidence            5567788888988888765543 3332222 111   1111000000  111145678899987  88999999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                           ++.|.+.+...+||+|++|+++|+|+.+|+.+
T Consensus        79 -----l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          79 -----RQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             -----HHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence                 99999999999999998899999999999974

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.16  E-value=6.5e-06  Score=60.75  Aligned_cols=104  Identities=22%  Similarity=0.298  Sum_probs=72.3

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCC--Cc---ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR--SS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~  106 (250)
                      ++.+..+.++.++...+..... .++...+  ..   +...+. .............++.++|.+  ++.++++++++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l-~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~   79 (114)
T cd04613           3 VVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDI-REILFDPSLYDLVVASDIMTK--PPVVVYPEDSLED   79 (114)
T ss_pred             ceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHH-HHHHhcccccccEEHHHhccC--CCcEEcCCCCHHH
Confidence            3456778888888888876553 3333322  11   111111 000001112223678899988  8999999999999


Q ss_pred             ccchhHHHHHHHcCCCeeEEEeC-CCcEEEEEehHHHHh
Q 025613          107 AFVPTALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLA  144 (250)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~Vvd~-~g~~~GiVt~~dL~~  144 (250)
                      +     ++.|.+.+...+||+++ +|+++|+|+..|+.+
T Consensus        80 ~-----~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          80 A-----LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             H-----HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            9     99999999999999997 789999999999974

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.14  E-value=5.5e-06  Score=61.09  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=68.6

Q ss_pred             ceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           34 PCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      .++..+.+..++...+.+... .++...  +.+.   ...+......   ......++.++|..  +++.+.+++++.++
T Consensus         4 ~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~---~~~~~~~v~~~~~~--~~~~i~~~~~~~~~   78 (111)
T cd04639           4 ETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA---EGGPDAPVRGVMRR--DFPTVSPSATLDAV   78 (111)
T ss_pred             eEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH---hcCCCCcHHHHhcC--CCcEECCCCcHHHH
Confidence            456677888888877754432 333222  2211   1111000000   01122468889987  89999999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                           ++.|.+++...+||++++|+++|+|+..|+.+
T Consensus        79 -----~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          79 -----LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             -----HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence                 99999999999999998799999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.13  E-value=8.9e-06  Score=59.09  Aligned_cols=47  Identities=38%  Similarity=0.529  Sum_probs=43.5

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                      +++++.+++++.+|++.|.+.+...+||+|++|+++|+++.+|++..
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence            57889999999999999999999999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.13  E-value=1.2e-05  Score=58.55  Aligned_cols=98  Identities=19%  Similarity=0.260  Sum_probs=68.0

Q ss_pred             ceecCCCChhHHHHHhhhcCC-eeeeeC-CCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccchh
Q 025613           34 PCLLLSRPGCRVFSVLATSSD-RVSALR-RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPT  111 (250)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~  111 (250)
                      ..+..+.+..++...+.+... ..+... +.+.  +  .+............++.++|.+  ++.++++++++.++    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~--G--iv~~~~l~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~----   73 (105)
T cd04599           4 ITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLV--G--IITSRDVRRAHPNRLVADAMTR--EVVTISPEASLLEA----   73 (105)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEEEEEECCEEE--E--EEehHHhhcccccCCHHHHccC--CCEEECCCCCHHHH----
Confidence            456677888888887766543 333222 2211  0  0000000011123457889987  89999999999999    


Q ss_pred             HHHHHHHcCCCeeEEEeCCCcEEEEEehHHHH
Q 025613          112 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  143 (250)
Q Consensus       112 ~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~  143 (250)
                       ++.|.+++...+||+++ |+++|+||..|+.
T Consensus        74 -~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          74 -KRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             -HHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence             99999999999999997 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.12  E-value=7.7e-06  Score=61.34  Aligned_cols=105  Identities=24%  Similarity=0.283  Sum_probs=70.9

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc---cccccccccCC-CCC-------CCCCceeccccccCCceeEe
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA---VFASGTLTANS-AAP-------SSGVYTVGDFMTTKEELHVV   98 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~~~-~~~-------~~~~~~v~~~m~~~~~~~~v   98 (250)
                      +.++..+.+..++...+.+... .++...  +.+.   ...+....... ...       .....++.++|..  ++..+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v   80 (122)
T cd04803           3 VVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT--DVLTV   80 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC--CCeEe
Confidence            4566778888888887765543 333222  2211   11110000000 000       1245678889987  78999


Q ss_pred             CCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           99 KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        99 ~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ++++++.++     ++.|.+.+...+||++++|+++|+|+..|+.+
T Consensus        81 ~~~~~~~~~-----~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          81 TPDTPLREA-----AEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CCCCcHHHH-----HHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            999999999     99999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.12  E-value=9.8e-06  Score=59.35  Aligned_cols=100  Identities=18%  Similarity=0.301  Sum_probs=70.5

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      ++.+..+.+..++...+.+... .++...  +.+.  .... .+..    ......++.++|..  .+..+.+++++.++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~-dl~~----~~~~~~~v~~~~~~--~~~~v~~~~~~~~~   76 (109)
T cd04583           4 PVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLE-SLEQ----AYKEAKSLEDIMLE--DVFTVQPDASLRDV   76 (109)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHH-HHHH----HhhcCCcHhHhhcC--CceEECCCCcHHHH
Confidence            4567778888888888876544 333322  2211  1111 0000    00122467888987  78999999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                           ++.|.+.+...+||++++|+++|+|+..|+++
T Consensus        77 -----~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          77 -----LGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             -----HHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence                 99999999999999998899999999999974

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.12  E-value=1.6e-05  Score=58.67  Aligned_cols=105  Identities=25%  Similarity=0.279  Sum_probs=70.6

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCC-Ccc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR-SSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      ++.+..+.++.++...+..... .++...+ .+.  .. .+...............++.++|..  .+..+.+++++.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~   80 (113)
T cd04622           3 VVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTEDDDVDEA   80 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECCCCCHHHH
Confidence            4566778888888888765443 3332222 111  10 1100000000112223358899987  78999999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                           ++.|.+.+...+||++++|+++|+|+..|+.+
T Consensus        81 -----~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          81 -----ARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             -----HHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                 99999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.12  E-value=9e-06  Score=60.04  Aligned_cols=105  Identities=17%  Similarity=0.149  Sum_probs=70.2

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC-CCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      ++.+..+.++.++...+.+... .++... +.+.  .. .+...............++.++|.+  ++.++++++++.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~~~~l~~~   80 (113)
T cd04587           3 PATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATSDTPVLEA   80 (113)
T ss_pred             CeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcCCCCHHHH
Confidence            4456677888888888765543 222211 2211  11 1100000000111112578899987  78899999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                           ++.|.+++...+||++++|+++|+|+..|++.
T Consensus        81 -----~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          81 -----LHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             -----HHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence                 99999999999999998899999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.11  E-value=1.1e-05  Score=59.60  Aligned_cols=104  Identities=19%  Similarity=0.148  Sum_probs=70.5

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCC-Ccc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhccc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR-SSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAF  108 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~  108 (250)
                      .+++..+.++.++...+.++.. .++...+ ...  ...................+++++|.+  +++.+++++++.++ 
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~-   79 (111)
T cd04589           3 PLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATF--PLITVDPDDFLFNA-   79 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCC--CcEEECCCCcHHHH-
Confidence            3456778888888888866554 3332222 211  111100000000112234568899987  89999999999999 


Q ss_pred             chhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       109 ~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                          ++.|.+++...+||+++ |+++|+|+..|+.+
T Consensus        80 ----~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          80 ----LLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             ----HHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence                99999999999999985 89999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.11  E-value=1.7e-05  Score=58.12  Aligned_cols=100  Identities=24%  Similarity=0.268  Sum_probs=67.9

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCC-CCchhc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP-TTTVDE  106 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~-~~~v~~  106 (250)
                      +..+..+.+..++...+.+... .++...  +.+.  .... .+..    ......++.++|..  .+..+.+ ++++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~-~l~~----~~~~~~~v~~~~~~--~~~~~~~~~~~l~~   76 (110)
T cd04601           4 PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNR-DLRF----ETDLDKPVSEVMTP--ENLLTTVEGTSLEE   76 (110)
T ss_pred             CeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhh-Heee----cccCCCCHHHhccc--CceEEecCCCCHHH
Confidence            3456677788888877765543 333222  2221  1111 0000    01123578899976  5666666 999999


Q ss_pred             ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      +     ++.|.+++...+||++++|+++|+|+..|+++
T Consensus        77 ~-----~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          77 A-----LELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             H-----HHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            9     99999999999999998899999999999974

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.10  E-value=6e-05  Score=70.55  Aligned_cols=101  Identities=15%  Similarity=0.138  Sum_probs=73.8

Q ss_pred             cccceecCCCChhHHHHHhhhcCC-eeeeeCCC-c---ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-S---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      ....++..+.++.++...|.++.. ..+...+. +   +...+.       .......+++++|+.  +++++++++++.
T Consensus        96 ~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL-------~~~~~~~~V~dIMt~--~litv~~~~sL~  166 (475)
T TIGR01303        96 DTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDL-------LGVDRFTQVRDIMST--DLVTAPADTEPR  166 (475)
T ss_pred             cCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHh-------hcCCCCCCHHHHccC--CceEeCCCCcHH
Confidence            345567778899999988876654 22221111 0   001110       001122469999998  899999999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      ++     ++.|.++++..+||+|++|+++|+|+.+||++.
T Consensus       167 eA-----l~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~  201 (475)
T TIGR01303       167 KA-----FDLLEHAPRDVAPLVDADGTLAGILTRTGALRA  201 (475)
T ss_pred             HH-----HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence            99     999999999999999988999999999999975

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.10  E-value=1.5e-05  Score=58.24  Aligned_cols=98  Identities=16%  Similarity=0.271  Sum_probs=68.3

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC-CCc---ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      ++.+..+.+..++...+..... .++... +.+   +...+.  .     ......+++++|.+  .+..+.+++++.++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l--~-----~~~~~~~~~~~~~~--~~~~v~~~~~l~~~   74 (107)
T cd04610           4 VITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDL--L-----GKDPDETVEEIMSK--DLVVAVPEMDIMDA   74 (107)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHh--h-----ccCccccHHHhCCC--CCeEECCCCCHHHH
Confidence            4456677788888877754432 232222 211   111110  0     01123468899987  78899999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                           ++.|.+++...+||++++|+++|+|+..|+++
T Consensus        75 -----~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          75 -----ARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             -----HHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence                 99999999999999998899999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.10  E-value=7.9e-06  Score=60.21  Aligned_cols=101  Identities=24%  Similarity=0.305  Sum_probs=71.0

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC-CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      ++++..+.+..++...+..... .++... +.+.   ...+.....   .......++.++|..  ++..+.+++++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~---~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~   78 (110)
T cd04595           4 VKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKAL---RHGLGHAPVKDYMST--DVVTVPPDTPLSEV   78 (110)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHH---hcccccCcHHHHhcC--CCEEECCCCcHHHH
Confidence            4567778888888888765443 333222 2221   111110000   111145678899987  88999999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                           ++.|.+++...+||++ +|+++|+|+..|+.+
T Consensus        79 -----~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          79 -----QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             -----HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence                 9999999999999999 789999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.10  E-value=1.3e-05  Score=60.75  Aligned_cols=51  Identities=22%  Similarity=0.420  Sum_probs=46.3

Q ss_pred             cccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           87 DFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        87 ~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      +.|..  ++..+++++++.++     ++.|.+++...+||+|++|+++|+||..|+++
T Consensus        75 ~~~~~--~~~~v~~~~~l~~a-----~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSR--PLITCTPSSTLKEV-----ITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccC--CCeEECCCCcHHHH-----HHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            45656  78999999999999     99999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.08  E-value=1.1e-05  Score=59.54  Aligned_cols=102  Identities=25%  Similarity=0.301  Sum_probs=70.0

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      ++.+..+.++.++...+.+... .++...  +.+.  .......... ........++.++|..  ++..+.+++++.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~   79 (111)
T cd04626           3 FPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLD-LFESFLEKKVFNIVSQ--DVFYVNEEDTIDEA   79 (111)
T ss_pred             ceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHH-hhcccccCcHHHHhcC--CcEEEcCCCcHHHH
Confidence            4556778888888888866553 334332  2211  1111000000 0111123468888987  88999999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHH
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  143 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~  143 (250)
                           ++.|.+++...+||+++ |+++|+|+..|+.
T Consensus        80 -----~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~  109 (111)
T cd04626          80 -----LDIMREKQIGRLPVVDD-NKLIGVVRTKDIL  109 (111)
T ss_pred             -----HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhc
Confidence                 99999999999999997 8999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.08  E-value=1.9e-05  Score=60.10  Aligned_cols=51  Identities=37%  Similarity=0.625  Sum_probs=46.5

Q ss_pred             CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          190 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       190 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      ++++++++++++.++++.|.+.+...+||+|++|+++|+|+.+|++..+.+
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~   52 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS   52 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH
Confidence            468899999999999999999999999999988999999999999986654

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.08  E-value=8.9e-06  Score=72.51  Aligned_cols=60  Identities=25%  Similarity=0.222  Sum_probs=53.0

Q ss_pred             CCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          180 NGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       180 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      ...++.++|.+  +++++++++++.+|++.|.+.+...+||+|++|+++|+||..|+.+.+.
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~  261 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD  261 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh
Confidence            34568999987  8999999999999999999999888888898899999999999987554

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.08  E-value=1.8e-05  Score=71.98  Aligned_cols=121  Identities=25%  Similarity=0.369  Sum_probs=94.8

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEe-CCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEV  172 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd-~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (250)
                      .+..+.+..++.++     ...+.+++++.+||.| +.|.+..++|.+-+++++...+..            .|  +   
T Consensus       163 ~~~~i~p~~s~l~~-----~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~------------~~--~---  220 (381)
T KOG1764|consen  163 PFVSISPESSLLDA-----VLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRL------------LP--L---  220 (381)
T ss_pred             CceeecCcHHHHHH-----HHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcc------------cc--c---
Confidence            34788889999999     9999999999999999 458999999999999886544421            00  0   


Q ss_pred             HHHHhccCCCccccc---ccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          173 QKLLSKTNGKMVGDL---MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       173 ~~~~~~~~~~~v~~i---m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                          ......++.++   +..+...+..++++.+|+++|.+.++..+|||+++|+.+|++++.|+.....+
T Consensus       221 ----~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~  287 (381)
T KOG1764|consen  221 ----PSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLARE  287 (381)
T ss_pred             ----HHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhc
Confidence                01112222222   12358889999999999999999999999999999999999999999887654

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.07  E-value=2.2e-05  Score=57.32  Aligned_cols=98  Identities=13%  Similarity=0.142  Sum_probs=68.2

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeee--CCCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSAL--RRSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      ++.+..+.+..+++..+.+... .++..  .+.+.  .... .+.      .....+++++|.+  .+..+.+++++.++
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~-dl~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~   73 (106)
T cd04582           3 PITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRR-EAA------RASGGCCGDHAEP--FKVTVSVDDDLRIV   73 (106)
T ss_pred             CcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHH-HHH------Hhcccchhhhccc--CCEEECCCCCHHHH
Confidence            4456677788888877765543 33322  22221  1110 000      0011247888987  67889999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                           ++.|.+++...+||+|++|+++|+|+.+++.+
T Consensus        74 -----~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          74 -----LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             -----HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                 99999999999999998899999999999974

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.07  E-value=1.5e-05  Score=58.75  Aligned_cols=103  Identities=22%  Similarity=0.189  Sum_probs=70.4

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC-CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      ++++..+.++.++...+.+... .++... +.+.   ...+...... ........++.++|..  +++.+++++++.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~   79 (111)
T cd04800           3 PVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVV-AEGLDPDTPVSEVMTA--PPITIPPDATVFEA   79 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHh-ccCCCccCCHHHHhCC--CCeEECCCCcHHHH
Confidence            4556778888888887765543 333222 2211   1111000000 0112223578899987  89999999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                           ++.|.+++...+||+++ |+++|+++..|+.+
T Consensus        80 -----~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          80 -----LLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             -----HHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence                 99999999999999997 89999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.06  E-value=8.3e-06  Score=61.55  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=46.6

Q ss_pred             ccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHH
Q 025613           86 GDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  143 (250)
Q Consensus        86 ~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~  143 (250)
                      .++|..  ++.++++++++.++     ++.|.+++.+.+||+|++|+++|+||.+|+.
T Consensus        71 ~~~~~~--~~~~v~~~~~l~~a-----~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          71 LTIGTS--DVISINGDQPLIDA-----LHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             cccCcC--CceEeCCCCCHHHH-----HHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            346766  78999999999999     9999999999999999889999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.05  E-value=7.2e-06  Score=61.18  Aligned_cols=56  Identities=39%  Similarity=0.748  Sum_probs=51.2

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ..++.++|.+  +..++++++++.++     ++.|.+++...+||++++|+++|+|+..|+++
T Consensus        66 ~~~~~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTR--DPITVSPDASVEEA-----AELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccC--CCeEeCCCCcHHHH-----HHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            4568889987  89999999999999     99999999999999998899999999999974

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.05  E-value=1.7e-05  Score=58.26  Aligned_cols=103  Identities=25%  Similarity=0.336  Sum_probs=69.5

Q ss_pred             ceecCCCChhHHHHHhhhcCC-eeeeeC-CCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccc
Q 025613           34 PCLLLSRPGCRVFSVLATSSD-RVSALR-RSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFV  109 (250)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~  109 (250)
                      ..+..+.+..++.+.+.+... .++..+ +.++  .... .+............++.++|..  ++..+.+++++.++  
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~-dl~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~--   78 (111)
T cd04612           4 VTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLA-DIRRVPAEGREATVLVGDVMTR--DPVTASPDETLRDA--   78 (111)
T ss_pred             EEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHH-HHHHHHhcCcccccCHHHhccC--CCeEECCCCCHHHH--
Confidence            456678888888888765543 332222 2211  1111 0000000111112367788887  89999999999999  


Q ss_pred             hhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          110 PTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       110 ~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                         ++.|.+++...+||++++|+++|+|+..|+.+
T Consensus        79 ---~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          79 ---LKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             ---HHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence               99999999999999998899999999999974

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.05  E-value=2.3e-05  Score=57.84  Aligned_cols=50  Identities=34%  Similarity=0.522  Sum_probs=45.4

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      ++.++++++++.++++.|.+.+...+||+|++|+++|+|+..|+++.+.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~   51 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA   51 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc
Confidence            57789999999999999999999999999988999999999999887644

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.03  E-value=2.1e-05  Score=58.26  Aligned_cols=50  Identities=28%  Similarity=0.456  Sum_probs=45.7

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      +++++++++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++.+.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~   51 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG   51 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc
Confidence            46789999999999999999999999999988999999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.03  E-value=3.5e-05  Score=70.97  Aligned_cols=141  Identities=13%  Similarity=0.139  Sum_probs=96.5

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc------ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v  104 (250)
                      .+.++..+.+..++...+.+..+ ++|..++..      .+..+... ..  ..  ....++++|++   +..+++++++
T Consensus       202 ~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~-~~--~~--~~~~l~~~~~~---~~~Vpe~~~l  273 (408)
T TIGR03520       202 DIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLP-HL--NK--KNFDWQSLLRE---PYFVPENKKL  273 (408)
T ss_pred             hEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHh-Hh--cc--CCCCHHHHcCC---CeEeCCCCcH
Confidence            46678889999999999887777 888877642      12222110 00  00  23456788876   7899999999


Q ss_pred             hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccCCCcc
Q 025613          105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMV  184 (250)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  184 (250)
                      .++     ++.|++++.+.++|+|+.|..+|+||.+|+++.+.  |.          ..+++           ......+
T Consensus       274 ~~l-----l~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeiv--ge----------i~de~-----------d~~~~~i  325 (408)
T TIGR03520       274 DDL-----LRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIV--GD----------ISDEF-----------DDEDLIY  325 (408)
T ss_pred             HHH-----HHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHh--CC----------CCCcC-----------CcCccce
Confidence            999     99999999999999999899999999999998642  21          00000           0001111


Q ss_pred             cccccCCCeEecCCCCHHHHHHHHH
Q 025613          185 GDLMTPAPVVVRETTNLEDAARLLL  209 (250)
Q Consensus       185 ~~im~~~~~~v~~~~~l~~a~~~m~  209 (250)
                      .. .......++..+++.++.+.|.
T Consensus       326 ~~-~~~~~~~v~G~~~l~~l~~~l~  349 (408)
T TIGR03520       326 SK-IDDNNYVFEGKTSLKDFYKILK  349 (408)
T ss_pred             EE-eCCCeEEEEeccCHHHHHHHhC
Confidence            11 1344577888999999888773

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.02  E-value=1.3e-05  Score=60.00  Aligned_cols=104  Identities=22%  Similarity=0.302  Sum_probs=70.2

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC-CCcc---cccccccccCC-C--------CCCCCCceeccccccCCceeEe
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSA---VFASGTLTANS-A--------APSSGVYTVGDFMTTKEELHVV   98 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~---~~~~~~~~~~~-~--------~~~~~~~~v~~~m~~~~~~~~v   98 (250)
                      ++++..+.+..++...+.+... .++... +.+.   ...+....... .        .......++.++|..  +...+
T Consensus         3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v   80 (121)
T cd04633           3 VITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR--PVITI   80 (121)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC--CceEE
Confidence            4466778888888887765443 333222 2211   11110000000 0        012234578888987  89999


Q ss_pred             CCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           99 KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        99 ~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ++++++.++     ++.|.+.+...+||+++ |+++|+|+..|+.+
T Consensus        81 ~~~~~l~~~-----~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          81 EPDTSVSDV-----ASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             CCCCcHHHH-----HHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            999999999     99999999999999997 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.00  E-value=9e-06  Score=61.25  Aligned_cols=56  Identities=41%  Similarity=0.723  Sum_probs=50.8

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ..++.++|.+  +++++++++++.++     ++.|.+.+...+||++++|+++|+|+..|+++
T Consensus        69 ~~~~~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTR--NVITITPDDSIKDA-----AELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcC--CceEeCCCCcHHHH-----HHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            3468888887  89999999999999     99999999999999998799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.99  E-value=2.8e-05  Score=57.37  Aligned_cols=103  Identities=20%  Similarity=0.320  Sum_probs=68.8

Q ss_pred             ceecCCCChhHHHHHhhhcCC-eeeeeCCCcc----cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhccc
Q 025613           34 PCLLLSRPGCRVFSVLATSSD-RVSALRRSSA----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAF  108 (250)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~  108 (250)
                      ..+..+.+..++...+..+.. .++...+.-+    ...+...............++.++|.+  ++..+++++++.++ 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~-   80 (112)
T cd04802           4 ITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDPNASLNEA-   80 (112)
T ss_pred             EEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECCCCCHHHH-
Confidence            345677888888888876553 3332222110    101100000000111234578899987  78999999999999 


Q ss_pred             chhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       109 ~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                          ++.|.+++...+||++++ +++|+|+..|+.+
T Consensus        81 ----~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          81 ----AKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             ----HHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence                999999999999999865 9999999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.97  E-value=3.7e-05  Score=58.32  Aligned_cols=49  Identities=41%  Similarity=0.632  Sum_probs=44.7

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      ++.++.+++++.++++.|.+.+...+||+|++|+++|+||..|+++.+.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~   50 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVV   50 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHh
Confidence            4678999999999999999999999999998899999999999997653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.96  E-value=1.1e-05  Score=60.41  Aligned_cols=57  Identities=32%  Similarity=0.538  Sum_probs=51.2

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ...++.++|..  ++..+.+++++.++     ++.|.+++...+||++++|+++|+++..|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIATA-----VELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHHHH-----HHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            34567888877  78999999999999     99999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.96  E-value=1.3e-05  Score=59.24  Aligned_cols=104  Identities=18%  Similarity=0.186  Sum_probs=68.3

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eee-eeCCCcc--cc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVS-ALRRSSA--VF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~-~~~~~~~--~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      ++.+..+.++.++.+.+.+... ... ...+.+.  .. .+...............++.++|..  ++.++++++++.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a   80 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNP--EPIVASPDDSIDEV   80 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCC--CCeEECCCCCHHHH
Confidence            3456677788888877754443 222 2222211  11 1100000000011223578899987  78899999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                           ++.|.+++...+||++ +|+++|+||.+|+.+
T Consensus        81 -----~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          81 -----RRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             -----HHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence                 9999999999999998 589999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.96  E-value=3e-05  Score=73.06  Aligned_cols=108  Identities=17%  Similarity=0.171  Sum_probs=79.4

Q ss_pred             cccccceecCCCChhHHHHHhhhcCC-eeeeeCC-----Cc--ccc-cccccccCCCCCCCCCceeccccccCCceeEeC
Q 025613           29 FALQLPCLLLSRPGCRVFSVLATSSD-RVSALRR-----SS--AVF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVK   99 (250)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-----~~--~~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~   99 (250)
                      +...++.+..+.++.++...+.++.. .++...+     ..  ... .+.  ..   . .....++.++|++.+.+++++
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL--~~---v-~~~~~~V~eIMt~~~~lvtv~  179 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDW--DF---V-NDRETKLSEVMTSDDDLVTAP  179 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHH--hh---c-cccCCcHHHHhccCCCcEEEC
Confidence            45567788889999999988877665 3333321     10  011 110  00   0 123567999999833488999


Q ss_pred             CCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhh
Q 025613          100 PTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  147 (250)
Q Consensus       100 ~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~  147 (250)
                      +++++.++     ++.|.++++..+||+|++|+++|+||..|+.+...
T Consensus       180 ~~~sL~eA-----l~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        180 AGIDLEEA-----EAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             CCCCHHHH-----HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            99999999     99999999999999998999999999999998754

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.95  E-value=2.3e-05  Score=57.81  Aligned_cols=93  Identities=19%  Similarity=0.277  Sum_probs=64.2

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceecc-------ccccCCceeEeCCCCch
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGD-------FMTTKEELHVVKPTTTV  104 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------~m~~~~~~~~v~~~~~v  104 (250)
                      ++++..+.++.++...+.+... .++...... .  +        ....+.++.++       +|..  ++.++++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~--~--------~~~~G~v~~~dl~~~~~~~m~~--~~~~v~~~~~l   70 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE-E--S--------PRLVGYILRSQLVVALKNYIDP--SPFTVSPRTSL   70 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceEcCCC-C--C--------CEEEEEEeHHHHHHHHHHhccC--CCceECCCCcH
Confidence            5567788888888887765532 222222100 0  0        00111112122       7877  78899999999


Q ss_pred             hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      .++     ++.|.+++...+||++ +|+++|+|+.+|+.+
T Consensus        71 ~~~-----~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          71 EKV-----HQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             HHH-----HHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            999     9999999999999995 689999999999974

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.95  E-value=3.1e-05  Score=70.55  Aligned_cols=113  Identities=21%  Similarity=0.228  Sum_probs=80.2

Q ss_pred             CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCC
Q 025613           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN  156 (250)
Q Consensus        77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~  156 (250)
                      ......++++++|.+   ...+...... .+     ++.   .+...+.|+|.     |+++..+...+..         
T Consensus       268 ~~~~~~l~a~~~m~~---~~~~~~~~~~-~~-----~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~---------  321 (382)
T TIGR03415       268 TNPLNVLTARSLMRP---LTDLEHVDGG-WC-----VSD---RRDTWLFTIDK-----QVRRRDAKLPVQA---------  321 (382)
T ss_pred             cCcccceeHHHHhcc---cccccccCcc-hh-----hhh---cccceeEeecc-----ceecccchHhHhh---------
Confidence            345667788899965   3333222222 34     433   67778888885     8888877664311         


Q ss_pred             CCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                                           ......+.+ +..+..++++++++.+++..+.+.+. .++|+|+ |+++|+|++.+++.
T Consensus       322 ---------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~  377 (382)
T TIGR03415       322 ---------------------WAAEQEVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYH  377 (382)
T ss_pred             ---------------------cccccchhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHH
Confidence                                 012234666 56668899999999999999988887 4889985 99999999999999


Q ss_pred             HHH
Q 025613          237 AAL  239 (250)
Q Consensus       237 ~l~  239 (250)
                      ++.
T Consensus       378 ~~~  380 (382)
T TIGR03415       378 ALL  380 (382)
T ss_pred             HHh
Confidence            875

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.93  E-value=2.8e-05  Score=72.37  Aligned_cols=62  Identities=35%  Similarity=0.538  Sum_probs=56.2

Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          179 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       179 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      ....++.++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+||.+|+++.+..
T Consensus       332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~  393 (454)
T TIGR01137       332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFA  393 (454)
T ss_pred             hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhc
Confidence            45678999999999999999999999999999999999999988999999999999986643

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.93  E-value=2.6e-05  Score=58.30  Aligned_cols=104  Identities=20%  Similarity=0.254  Sum_probs=70.2

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC--CCcc---ccccccccc-CCC--C-----CCCCCceeccccccCCceeEe
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSSA---VFASGTLTA-NSA--A-----PSSGVYTVGDFMTTKEELHVV   98 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~-~~~--~-----~~~~~~~v~~~m~~~~~~~~v   98 (250)
                      ++++..+.++.++...+..... .++...  +.+.   ...+..... ...  .     ......++.++|..  .+.++
T Consensus         3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~i   80 (121)
T cd04584           3 VVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK--DVITV   80 (121)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC--CCeEE
Confidence            4566778888888887765543 333222  2211   111100000 000  0     02334568889987  78999


Q ss_pred             CCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           99 KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        99 ~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ++++++.++     ++.|.+++...+||+++ |+++|+|+..|+.+
T Consensus        81 ~~~~~l~~~-----~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          81 HPLDTVEEA-----ALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CCCCcHHHH-----HHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            999999999     99999999999999987 89999999999974

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.93  E-value=1.9e-05  Score=61.16  Aligned_cols=55  Identities=31%  Similarity=0.583  Sum_probs=50.2

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ..+++++|.+  ++..+.+++++.++     ++.|.++++..+||+++ |+++|+|+..|+.+
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTE--EIITVSPNDDVVDA-----AKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCC--CCeEECCCCCHHHH-----HHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            4578899987  78899999999999     99999999999999997 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.90  E-value=1.5e-05  Score=58.97  Aligned_cols=55  Identities=38%  Similarity=0.607  Sum_probs=49.9

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ..++.++|..  ++..+.+++++.++     ++.|.+++...+||+|+ |+++|+|+..|+.+
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIVDL-----AQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHHHH-----HHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            4568889987  78899999999999     99999999999999997 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.89  E-value=1.3e-05  Score=61.49  Aligned_cols=55  Identities=38%  Similarity=0.498  Sum_probs=50.5

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ..++.++|.+  ++..+.+++++.++     ++.|.+.+.+.+||+| +|+++|+|+..|+.+
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~~~~~-----~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          80 GRKVADVMTR--PVVTVGEDTPLAEV-----AELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCCHHHHhCC--CceEeCCCCcHHHH-----HHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            4578899987  89999999999999     9999999999999999 899999999999874

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.89  E-value=1.7e-05  Score=59.00  Aligned_cols=100  Identities=22%  Similarity=0.238  Sum_probs=67.0

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeC-----CCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCC--CC
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-----RSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP--TT  102 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~--~~  102 (250)
                      ..++..+.+..++...+.+... ..+...     +.+.  .... .+...    .....+++++|..  ....+..  ++
T Consensus         4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~-dl~~~----~~~~~~v~~~~~~--~~~~~~~~~~~   76 (114)
T cd04602           4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSR-DIDFL----TDSETPLSEVMTP--REVLVVAPTGI   76 (114)
T ss_pred             CeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhH-Hhhhh----hccCCCHHHhcCC--CceEEECCCCC
Confidence            3456678888888888765543 222222     1111  1111 00000    0112458899987  5666655  99


Q ss_pred             chhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          103 TVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       103 ~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ++.++     ++.|.+++...+||++++|+++|+|+..|+.+
T Consensus        77 ~l~~~-----l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          77 TLEEA-----NEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CHHHH-----HHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            99999     99999999999999998899999999999873

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.88  E-value=2.1e-05  Score=60.15  Aligned_cols=53  Identities=36%  Similarity=0.605  Sum_probs=49.0

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      ++.++|.+  +++.+.+++++.++     ++.|.+.+...+||+++ |+++|+|+..|+++
T Consensus        79 ~v~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          79 KVEEIMTK--KVITVDEDTTIEDV-----ARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CHHHhccC--CceEECCCCcHHHH-----HHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            68888987  78999999999999     99999999999999997 99999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=97.88  E-value=6.2e-05  Score=55.36  Aligned_cols=50  Identities=26%  Similarity=0.490  Sum_probs=45.5

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHh
Q 025613          191 APVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~~l~~  240 (250)
                      ++.++++++++.+|++.|.+.+...+||++++ |+++|+++..|+++...+
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~   52 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE   52 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc
Confidence            46789999999999999999999999999987 999999999999987654

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.88  E-value=2.5e-05  Score=67.52  Aligned_cols=58  Identities=33%  Similarity=0.436  Sum_probs=53.3

Q ss_pred             CcccccccCC-CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          182 KMVGDLMTPA-PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       182 ~~v~~im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      .+++++|.++ ++++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..|+.+.+.
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~  213 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL  213 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence            5788999888 899999999999999999999999999998899999999999988654

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.88  E-value=2.3e-05  Score=57.63  Aligned_cols=100  Identities=16%  Similarity=0.189  Sum_probs=67.2

Q ss_pred             eecCCCChhHHHHHhhhcCC-eeeeeC-CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccc
Q 025613           35 CLLLSRPGCRVFSVLATSSD-RVSALR-RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFV  109 (250)
Q Consensus        35 ~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~  109 (250)
                      .+..+.+..++...+.+... .++... +.+.   ...+... ..  .......++.++|..  ++..+++++++.++  
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~-~~--~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~--   77 (110)
T cd04588           5 TLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAH-AI--ARGLELAKVKDVMTK--DVITIDEDEQLYDA--   77 (110)
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHH-HH--hccccccCHHHHhcC--CceEECCCCCHHHH--
Confidence            35566777888777765543 333222 2111   1111100 00  011122567888877  78999999999999  


Q ss_pred             hhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          110 PTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       110 ~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                         ++.|.+.+...+||++++|+++|+|+..|+.+
T Consensus        78 ---~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          78 ---IRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             ---HHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence               99999999999999998899999999999973

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.87  E-value=2.9e-05  Score=68.12  Aligned_cols=117  Identities=27%  Similarity=0.319  Sum_probs=89.0

Q ss_pred             CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCC
Q 025613           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN  156 (250)
Q Consensus        77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~  156 (250)
                      ......++++++|.+......-.+...-..+     +..+.......+.+++..++.+|+|+..++...           
T Consensus       268 v~~~~VltA~~IM~~~~~~~~~~~~~~~~~a-----l~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-----------  331 (386)
T COG4175         268 VDRSRVLTAKDIMRRPDLLIRKTPGDGPRVA-----LKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA-----------  331 (386)
T ss_pred             CChhheeeHHHhhcccccccccccccccchh-----hhhhhhccchhhHHHhccCceeeEEeccchhcc-----------
Confidence            4566777899999852122222233334455     777777776667777777889999999988731           


Q ss_pred             CCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                                                    .+.+.+.++..++++.+.+....+.+. .++|+|++|+++|+|++..+++
T Consensus       332 ------------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~  380 (386)
T COG4175         332 ------------------------------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLE  380 (386)
T ss_pred             ------------------------------cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHH
Confidence                                          356668889999999999999988887 5789999999999999999999


Q ss_pred             HHHh
Q 025613          237 AALQ  240 (250)
Q Consensus       237 ~l~~  240 (250)
                      ++..
T Consensus       381 aL~~  384 (386)
T COG4175         381 ALAR  384 (386)
T ss_pred             HHhc
Confidence            8864

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.86  E-value=0.0002  Score=67.46  Aligned_cols=104  Identities=22%  Similarity=0.223  Sum_probs=76.4

Q ss_pred             cccceecCCCChhHHHHHhhhcCC-eeeeeCC----Cc----ccccccccccCCCCCCCCCceeccccccCCceeEeCCC
Q 025613           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRR----SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPT  101 (250)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~  101 (250)
                      ..+.++..+.++.++...+.++.. .++...+    ..    +...+..     .. .....+++++|++..++++++++
T Consensus       104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~-----~~-~~~~~~V~diMt~~~~lvtv~~~  177 (495)
T PTZ00314        104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID-----FV-KDKSTPVSEVMTPREKLVVGNTP  177 (495)
T ss_pred             cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh-----hc-ccCCCCHHHhhCCcCCceEeCCC
Confidence            345577888999999988877664 4443322    10    0111100     00 11245799999865578999999


Q ss_pred             CchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          102 TTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       102 ~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      .++.++     ++.|.+++...+||+|++++++|+||.+||.+.
T Consensus       178 ~sl~eA-----l~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~  216 (495)
T PTZ00314        178 ISLEEA-----NEVLRESRKGKLPIVNDNGELVALVSRSDLKKN  216 (495)
T ss_pred             CCHHHH-----HHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhc
Confidence            999999     999999999999999999999999999999975

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.84  E-value=5.8e-05  Score=55.90  Aligned_cols=104  Identities=26%  Similarity=0.337  Sum_probs=74.0

Q ss_pred             cccceecCCCChhHHHHHhhhcCC-eeeeeCCC-c---ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-S---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      ..++++..+.+..++...|.++.. .++...+. .   +...+.... . ........++.++|..  ++.++.++.++.
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~-~-~~~~~~~~~v~~v~~~--~~~~~~~~~~~~   82 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRA-L-AAGGKRLLPVKEVMTK--PVVTVDPDTPLE   82 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHH-H-hccCCccccHHHhccC--CcEEECCCCCHH
Confidence            446778889999999999988885 44444332 1   111111000 0 0111111168899997  789999999999


Q ss_pred             cccchhHHHHHHH-cCCCeeEEEeCCC-cEEEEEehHHHH
Q 025613          106 EAFVPTALEILVE-KRITGFPVIDDDW-KLVGLVSDYDLL  143 (250)
Q Consensus       106 ~a~~~~~~~~~~~-~~~~~~~Vvd~~g-~~~GiVt~~dL~  143 (250)
                      ++     .+.|.+ +++..+||+++++ +++|+++..|+.
T Consensus        83 ~~-----~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          83 EA-----LELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             HH-----HHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            99     999999 6999999999886 999999999873

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.82  E-value=2.8e-05  Score=58.33  Aligned_cols=55  Identities=36%  Similarity=0.582  Sum_probs=50.2

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      .+++++|..  +++.+++++++.++     ++.|.+++...+||++++|+++|+++..|+++
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVDEA-----SKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHHHH-----HHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            357888887  89999999999999     99999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.82  E-value=7.1e-05  Score=56.76  Aligned_cols=46  Identities=30%  Similarity=0.595  Sum_probs=42.7

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                      ++.++..++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~   47 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG   47 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence            4678999999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.81  E-value=0.00043  Score=64.58  Aligned_cols=101  Identities=21%  Similarity=0.270  Sum_probs=75.7

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc--------ccccccccccCCCCCCCCCceeccccc-cCCceeEeCCC
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS--------AVFASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPT  101 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~m~-~~~~~~~v~~~  101 (250)
                      .+.++..+.++.++...+.++.. .++...+..        +...+..  .   . .....+++++|+ .  ++++++++
T Consensus        89 ~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~--~---~-~~~~~~V~dvm~~~--~~~~V~~~  160 (450)
T TIGR01302        89 DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR--F---V-KDKGKPVSEVMTRE--EVITVPEG  160 (450)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHh--h---h-hcCCCCHHHhhCCC--CCEEECCC
Confidence            46678889999999998877654 444443220        1111100  0   0 112457889998 4  68999999


Q ss_pred             CchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          102 TTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       102 ~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      +++.++     ++.|.+++...+||+|++|+++|+||.+|+++.
T Consensus       161 ~sl~ea-----l~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~  199 (450)
T TIGR01302       161 IDLEEA-----LKVLHEHRIEKLPVVDKNGELVGLITMKDIVKR  199 (450)
T ss_pred             CcHHHH-----HHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhc
Confidence            999999     999999999999999999999999999999975

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.81  E-value=4.9e-05  Score=46.51  Aligned_cols=46  Identities=41%  Similarity=0.710  Sum_probs=41.5

Q ss_pred             eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613           95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus        95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      ++++.+++++.++     ++.|.+.++..+||++++++++|+++..++.+.
T Consensus         2 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEA-----LELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHH-----HHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            4678899999999     999999999999999988899999999999864

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.81  E-value=0.00012  Score=53.12  Aligned_cols=51  Identities=41%  Similarity=0.612  Sum_probs=46.1

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                      +++++..++++.++.+.|.+.+...+||++++++++|+++..|++..+...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~   52 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEG   52 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhc
Confidence            467899999999999999998889999999889999999999999887653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.80  E-value=4e-05  Score=73.56  Aligned_cols=60  Identities=30%  Similarity=0.484  Sum_probs=55.0

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      ...+++++|++++.++++++++.++++.|.+.+.+.+||+|++|+++|+||.+|+.+.+.
T Consensus       445 ~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~  504 (574)
T PRK01862        445 RTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLL  504 (574)
T ss_pred             hhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            457899999999999999999999999999999999999998899999999999988653

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.79  E-value=3.8e-05  Score=56.17  Aligned_cols=94  Identities=18%  Similarity=0.256  Sum_probs=64.9

Q ss_pred             ecCCCChhHHHHHhhhcCC-eeeeeC-CCcc--cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccchh
Q 025613           36 LLLSRPGCRVFSVLATSSD-RVSALR-RSSA--VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPT  111 (250)
Q Consensus        36 ~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~  111 (250)
                      +..+.+..++...+..... .++... +.+.  ..... +  .   . ....++.++|..  ...+++++.++.++    
T Consensus         6 v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~-l--~---~-~~~~~~~~~~~~--~~~~v~~~~~l~~a----   72 (104)
T cd04594           6 VKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKD-I--E---N-ATYGDVVDYIVR--GIPYVRLTSTAEEA----   72 (104)
T ss_pred             ECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHH-H--h---h-hcccchhhhhhc--CCcEEcCCCCHHHH----
Confidence            4567788888877765443 333222 2211  11000 0  0   0 011247778877  78999999999999    


Q ss_pred             HHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          112 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       112 ~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                       ++.|.+++...+||++ +|+++|+|+..|+..
T Consensus        73 -~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          73 -WEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             -HHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence             9999999999999998 589999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.76  E-value=0.0001  Score=53.82  Aligned_cols=49  Identities=29%  Similarity=0.445  Sum_probs=44.5

Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      +++++.+++++.++++.|.+.+.+.+||+++ |+++|++|..|+.+.+.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~   50 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIE   50 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhc
Confidence            4678999999999999999999999999997 999999999999987654

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.75  E-value=0.00023  Score=68.47  Aligned_cols=54  Identities=26%  Similarity=0.311  Sum_probs=49.6

Q ss_pred             cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhh
Q 025613          189 TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH  243 (250)
Q Consensus       189 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~  243 (250)
                      ++.|+-+.+.+++.++..+|.-.|++++-|.+ -|+++|+|..+++-+++.+...
T Consensus       809 DpaPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie~I~~  862 (931)
T KOG0476|consen  809 DPAPFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIENIYT  862 (931)
T ss_pred             CCCceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHHhccc
Confidence            56788899999999999999999999999988 7999999999999999998554

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=97.73  E-value=0.0001  Score=64.93  Aligned_cols=61  Identities=20%  Similarity=0.455  Sum_probs=54.8

Q ss_pred             cCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHH
Q 025613          179 TNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAAL  239 (250)
Q Consensus       179 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~~l~  239 (250)
                      .....+.++|.+  ++.+++.++++.++++.+.+.+..++||++++ ++++|+|+.+|++....
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~  127 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR  127 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh
Confidence            457789999987  68999999999999999999999999999876 78999999999997553

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.70  E-value=0.00012  Score=56.95  Aligned_cols=50  Identities=36%  Similarity=0.655  Sum_probs=45.1

Q ss_pred             CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          190 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       190 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      ++++++++++++.++++.|.+.+...+||+|+ |+++|++|..|+++.+..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~   50 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVT   50 (143)
T ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHh
Confidence            35788999999999999999999999999996 999999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11573 hypothetical protein; Provisional

Probab=97.68  E-value=0.00011  Score=67.63  Aligned_cols=106  Identities=14%  Similarity=0.050  Sum_probs=76.3

Q ss_pred             cccceecCCCChhHHHHHhhhcCC-eeeeeCCCc------ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCc
Q 025613           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (250)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~  103 (250)
                      ..+.+++.+.+..++...+.+..+ ++|.+++..      .+..+...... .........+.++|++   +..++++.+
T Consensus       197 ~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~-~~~~~~~~~l~~~~r~---~~~Vpe~~~  272 (413)
T PRK11573        197 NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT-EKKEFTKENMLRAADE---IYFVPEGTP  272 (413)
T ss_pred             ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh-ccCcCCHHHHHhhccC---CeEeCCCCc
Confidence            456788899999999998876666 888887652      12222100000 0011111223355654   789999999


Q ss_pred             hhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          104 VDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       104 v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      +.++     ++.|++++.+-+.|+|+.|...|+||.+|++..
T Consensus       273 l~~l-----L~~~~~~~~~~AiVvDEyG~~~GiVTleDilEe  309 (413)
T PRK11573        273 LSTQ-----LVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEE  309 (413)
T ss_pred             HHHH-----HHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHH
Confidence            9999     999999999999999999999999999999975

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.65  E-value=0.00024  Score=51.88  Aligned_cols=53  Identities=38%  Similarity=0.578  Sum_probs=47.2

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      .+.++|..  .+.++.+++++.++     ++.|.+++...+||+++ |+++|+|+..|+.+
T Consensus        53 ~~~~~~~~--~~~~v~~~~~l~~~-----~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          53 QLALLMTR--DPPTVSPDDDVKEA-----AKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             hHHHHhcC--CCceECCCCCHHHH-----HHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            46777877  78889999999999     99999999999999985 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.60  E-value=0.00021  Score=53.17  Aligned_cols=48  Identities=25%  Similarity=0.340  Sum_probs=42.7

Q ss_pred             CCeEecCCCCHHHHHHHHHHcC-CCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          191 APVVVRETTNLEDAARLLLETK-YRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       191 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      +++++++++++.++++.|...+ ...+||+|+ |+++|+++..|+++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~   50 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLS   50 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHh
Confidence            4678999999999999998877 789999998 99999999999987654

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.59  E-value=0.00017  Score=67.34  Aligned_cols=104  Identities=18%  Similarity=0.132  Sum_probs=74.8

Q ss_pred             ceecCCCChhHHHHHhhhcCC-eeeeeCCC-cc----cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           34 PCLLLSRPGCRVFSVLATSSD-RVSALRRS-SA----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      +.+....++.++...|..... .+.....+ |.    ...+... ..-........+|+++|+.  +++++..++-+.||
T Consensus       160 ~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~-~v~~~g~~~~~~V~evmT~--p~~svd~~~~~feA  236 (610)
T COG2905         160 VTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRS-RVIADGRSKTQKVSEVMTS--PVISVDRGDFLFEA  236 (610)
T ss_pred             cccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHH-HHHhcCCCcccchhhhhcc--CceeecCcchHHHH
Confidence            345557788888888765544 23333322 11    1111111 1112355667799999999  99999999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                           +-.|..+++.++||++ +|+++|+||..||++..
T Consensus       237 -----ml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         237 -----MLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF  269 (610)
T ss_pred             -----HHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence                 9999999999999998 68999999999999863

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.34  E-value=0.00072  Score=62.72  Aligned_cols=105  Identities=16%  Similarity=0.099  Sum_probs=72.9

Q ss_pred             cccceecCCCChhHHHHHhhhcC-CeeeeeCCCc------ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCc
Q 025613           31 LQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (250)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~  103 (250)
                      ..+.+++.+.+..++...+.+.. +++|..++..      .+..+.-.... ....  .........   +++.++++.+
T Consensus       216 ~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~-~~~~--~~~~~~~~~---~~~~Vpet~~  289 (429)
T COG1253         216 TDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALL-DGQS--DLDLRVLVR---PPLFVPETLS  289 (429)
T ss_pred             ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHh-cCcc--ccchhhccc---CCeEecCCCc
Confidence            44667888899999998885555 4888887431      12222111001 0100  112222222   4889999999


Q ss_pred             hhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          104 VDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       104 v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      +.++     ++.|++.+.+...|+|+.|...|+||.+|++...
T Consensus       290 ~~~l-----L~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeI  327 (429)
T COG1253         290 LSDL-----LEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEI  327 (429)
T ss_pred             HHHH-----HHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHH
Confidence            9999     9999999999999999999999999999999863

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.33  E-value=0.00071  Score=60.00  Aligned_cols=105  Identities=19%  Similarity=0.272  Sum_probs=77.3

Q ss_pred             eecCCCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccchhHH
Q 025613           35 CLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTAL  113 (250)
Q Consensus        35 ~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~  113 (250)
                      .+..+..+.+.....++..+ +.|....+.-..+-  +............++..+|++  ++.++.+.+++..+     .
T Consensus       202 yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGv--Vt~rDv~~~~~~t~ieKVMtk--np~tv~~~tsVAsv-----a  272 (432)
T COG4109         202 YLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGV--VTMRDVLDKKPSTTIEKVMTK--NPITVRAKTSVASV-----A  272 (432)
T ss_pred             eccccccHHHHHHHHHHcCCCccceecccceEEEE--EEehhhhcCCCCccHHHHhcc--CCeeecccchHHHH-----H
Confidence            34456666666666665555 55555544322211  111222445567789999999  89999999999999     9


Q ss_pred             HHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhc
Q 025613          114 EILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  148 (250)
Q Consensus       114 ~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~  148 (250)
                      +.|.-.++..+||+|++.+++|+||++|++..+..
T Consensus       273 q~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~  307 (432)
T COG4109         273 QMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             HHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence            99999999999999999999999999999987654

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=97.25  E-value=0.0017  Score=58.09  Aligned_cols=104  Identities=18%  Similarity=0.167  Sum_probs=75.9

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCCCc------ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      +-.++.+.|...+.+++....+ +++.++++.      ++..+...... ..+.   .+-.++++-..++..+++++++.
T Consensus       212 i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~-e~~~---~~k~d~~~~a~epyFVPe~Tpl~  287 (423)
T COG4536         212 IIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLN-EKNE---FTKEDILRAADEPYFVPEGTPLS  287 (423)
T ss_pred             eeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhh-ccCc---ccHhHHHHHhcCCeecCCCCcHH
Confidence            4468889999999999877766 999999873      22222111111 1111   23334443333589999999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      +.     +..|.+++-+-..|||+-|.+.|+||.+|+++-
T Consensus       288 ~Q-----L~~F~~~k~hialVVDEYG~i~GLVTLEDIlEE  322 (423)
T COG4536         288 DQ-----LVAFQRNKKHIALVVDEYGDIQGLVTLEDILEE  322 (423)
T ss_pred             HH-----HHHHHHhcceEEEEEeccCcEEeeeeHHHHHHH
Confidence            99     999999988888999999999999999999964

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=96.89  E-value=0.00088  Score=62.18  Aligned_cols=108  Identities=13%  Similarity=0.189  Sum_probs=73.4

Q ss_pred             ccccceecCCCChhHHHHHhhhcCCeeeeeCCC-ccccccc----ccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613           30 ALQLPCLLLSRPGCRVFSVLATSSDRVSALRRS-SAVFASG----TLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (250)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v  104 (250)
                      ...+..+..+.+..+++..+.+... ....... ...+...    .+.............++++|.+  +++.+.+++..
T Consensus       139 t~e~v~l~~~~Tv~~al~~ir~~~~-~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~~~~i~~im~~--~~~~V~~~~dq  215 (451)
T COG2239         139 TTEFVTLPEDVTVDEALDRIRERAE-DAETIYYLYVVDEKGKLLGVVSLRDLLTAEPDELLKDLMED--DVVSVLADDDQ  215 (451)
T ss_pred             eeeeEEeccCcCHHHHHHHHHHhcc-cccccceEEEECCccceEEEeeHHHHhcCCcHhHHHHHhcc--cceeecccCCH
Confidence            3445567778888888877654433 0000000 0111110    0000001123345678999999  79999999999


Q ss_pred             hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      +++     .+.+.+++.-.+||||++++++|+||..|+...
T Consensus       216 eev-----A~~~~~ydl~a~PVVd~~~~LiG~itiDDiidv  251 (451)
T COG2239         216 EEV-----ARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDV  251 (451)
T ss_pred             HHH-----HHHHHHhCCeecceECCCCceeeeeeHHHHHHH
Confidence            999     999999999999999999999999999999865

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=96.87  E-value=0.0017  Score=58.90  Aligned_cols=55  Identities=25%  Similarity=0.438  Sum_probs=49.6

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      .+.+.|..  ...++++++++.++     +..+.+++.+ +||+|++|+++|+|+..++++.+
T Consensus       303 ~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~  357 (363)
T TIGR01186       303 GLQDVLID--DIYTVDAGTLLRET-----VRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL  357 (363)
T ss_pred             chhhhhcc--CCceECCCCcHHHH-----HHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence            46677776  78899999999999     9999999988 99999999999999999999764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.43  E-value=0.0052  Score=56.49  Aligned_cols=57  Identities=23%  Similarity=0.266  Sum_probs=49.3

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhc
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  148 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~  148 (250)
                      .+++.+..  ...++.+++++.++     +..+.+.... +||+|++|+++|+|+..++++.+..
T Consensus       338 ~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        338 GLDAALID--APLAVDAQTPLSEL-----LSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             chhhhhcc--CCceeCCCCCHHHH-----HHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            46666766  78899999999999     9999987766 9999999999999999999987643

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=95.07  E-value=0.04  Score=50.05  Aligned_cols=58  Identities=33%  Similarity=0.367  Sum_probs=51.2

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      ....+.++|++  ..++.+.+.++.++     -+++.+++-..+||||++|.++-+|++.||.+.
T Consensus       169 ~~~~~~~vmt~--~~~~~~~gi~l~~~-----neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  169 NSLLVSDVMTK--NPVTGAQGITLKEA-----NEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             ccchhhhhccc--ccccccccccHHHH-----HHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence            34568899999  56888889999999     999999888889999999999999999999863

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=94.89  E-value=0.068  Score=45.28  Aligned_cols=102  Identities=18%  Similarity=0.153  Sum_probs=69.6

Q ss_pred             cceecCCCChhHHHHHhhhcC-CeeeeeCCC------cccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           33 LPCLLLSRPGCRVFSVLATSS-DRVSALRRS------SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      +-.+..+..+.+.+..+-.+. ++.|...+.      .++..+.... .  ........+.++.++   .+.|++.-.+.
T Consensus        79 M~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~-~--~~~~~~F~i~~lLRP---av~VPESKrvd  152 (293)
T COG4535          79 MITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPF-M--RSDAEPFDIKELLRP---AVVVPESKRVD  152 (293)
T ss_pred             heeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHH-h--cCCcccccHHHhccc---ceecccchhHH
Confidence            344566777777777664443 355555443      2222221100 0  112233466777766   78899999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      -.     ++.++.++.+..+|+|+-|-..|+||.+|++..
T Consensus       153 ~l-----LkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEq  187 (293)
T COG4535         153 RL-----LKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQ  187 (293)
T ss_pred             HH-----HHHHHhhcCceEEEEeccCCeeeeEEHHHHHHH
Confidence            99     999999999999999999999999999999974

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=94.74  E-value=0.033  Score=52.60  Aligned_cols=130  Identities=18%  Similarity=0.163  Sum_probs=93.4

Q ss_pred             CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCC
Q 025613           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRAD  155 (250)
Q Consensus        77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~  155 (250)
                      .-.+....++++|++-.++..+..+..+...    ......+.+++.+||.+.+ ...+|.+-...+..+....      
T Consensus       198 ~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~----~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~------  267 (498)
T KOG2118|consen  198 ALELTEKLVGEVMTPIEDVFALDANTKLDRE----TVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE------  267 (498)
T ss_pred             hHHHHHHHHHHhccchhhheeeccccccchH----HHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc------
Confidence            3455667899999998888888888877733    1556668899999999864 2344443334444331100      


Q ss_pred             CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613          156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  235 (250)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil  235 (250)
                                           ......++...+.....-+++++++.+.++.|++.+.+++.|.+ ...-+|+++..|+ 
T Consensus       268 ---------------------~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-  324 (498)
T KOG2118|consen  268 ---------------------VPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-  324 (498)
T ss_pred             ---------------------cccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-
Confidence                                 02235677788888788899999999999999988887777766 6678899999998 


Q ss_pred             HHHH
Q 025613          236 RAAL  239 (250)
Q Consensus       236 ~~l~  239 (250)
                      +...
T Consensus       325 ~~~~  328 (498)
T KOG2118|consen  325 EEVV  328 (498)
T ss_pred             hhhc
Confidence            6554

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=93.99  E-value=0.072  Score=50.88  Aligned_cols=56  Identities=18%  Similarity=0.278  Sum_probs=50.1

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      +...-+|++  .++++++++++..+     ..++++-+.+++.|++...+.+|++|++|+.+.
T Consensus       690 vDl~p~~n~--sPytV~~~mSl~k~-----~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  690 VDLHPFMNP--SPYTVPETMSLAKA-----FILFRQLGLRHLLVVPKTNRVVGILTRKDLARY  745 (762)
T ss_pred             cccccccCC--CCcccCcccchHHH-----HHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence            356678888  89999999999999     999999999999999988888999999999854

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=92.85  E-value=0.17  Score=46.38  Aligned_cols=53  Identities=15%  Similarity=0.283  Sum_probs=42.9

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      ++.+ +..  +..++++++++.++     +..+.+.+++ ++|+|+ |+++|+|+..+++.++
T Consensus       327 ~~~~-~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~  379 (382)
T TIGR03415       327 EVES-LEA--APTVINPDTLMRDV-----LAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHAL  379 (382)
T ss_pred             chhh-hcc--cCcccCCCCcHHHH-----HHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHH
Confidence            3444 344  67889999999999     9988887754 788885 9999999999999764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=92.52  E-value=0.24  Score=42.81  Aligned_cols=99  Identities=23%  Similarity=0.210  Sum_probs=59.1

Q ss_pred             eeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHH-HHHhccCCCcccccccCCCe----EecC
Q 025613          123 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQ-KLLSKTNGKMVGDLMTPAPV----VVRE  197 (250)
Q Consensus       123 ~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~im~~~~~----~v~~  197 (250)
                      .+.|++ +|+++-+=+..++++-.+..-               -..|-... ..........+.+.|.+...    .+..
T Consensus       205 ri~vm~-~G~i~Q~~~P~~il~~Pan~F---------------V~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  268 (309)
T COG1125         205 RIAVMD-AGEIVQYDTPDEILANPANDF---------------VEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLE  268 (309)
T ss_pred             eEEEec-CCeEEEeCCHHHHHhCccHHH---------------HHHHhccccccccccchhhHHHhhcccccccCCcccc
Confidence            466777 689999999988885311100               00000000 00011122334444433221    1333


Q ss_pred             CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          198 TTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       198 ~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                      .....+++..+...+...+||+|++|+++|.||+.+++..
T Consensus       269 ~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         269 GFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             chhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence            4445558888888999999999999999999999999864

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=90.91  E-value=0.3  Score=47.75  Aligned_cols=63  Identities=17%  Similarity=0.233  Sum_probs=54.8

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHHHHHHHhhh
Q 025613          180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~--g~~vGiIt~~Dil~~l~~~~  242 (250)
                      ....++++|.+++.++..+++..+.-+.+....++.+|+||+.  -.++|.|.+..+...+..+.
T Consensus       586 h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~i  650 (931)
T KOG0476|consen  586 HTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHI  650 (931)
T ss_pred             eEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhc
Confidence            3567899999999999999999999999887779999999853  35899999999999888744

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=89.48  E-value=0.56  Score=41.79  Aligned_cols=48  Identities=25%  Similarity=0.367  Sum_probs=40.5

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhh
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  147 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~  147 (250)
                      .+..+..++++.+.     +..+.+.+. .++|+|++|+++|+++...++.++.
T Consensus       336 ~~~~v~~d~~~~~~-----~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         336 DVLTVDADTPLSEI-----LARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             cccccCccchHHHH-----HHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence            57788899999888     877777664 5889999999999999999998753

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=85.33  E-value=1.6  Score=37.84  Aligned_cols=32  Identities=31%  Similarity=0.503  Sum_probs=28.9

Q ss_pred             HHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh
Q 025613          113 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  144 (250)
Q Consensus       113 ~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~  144 (250)
                      +..+...+...+||+|++|+++|.|+..+|+.
T Consensus       276 ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         276 LSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             HHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            77777888889999999999999999999974

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=83.78  E-value=2  Score=41.34  Aligned_cols=59  Identities=14%  Similarity=0.228  Sum_probs=49.1

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      ....+..+++|..  .+.++...++...+     ++++++-+.....| +++|++.|+||.+|++++
T Consensus       635 ~~~~~~lk~il~~--tp~tv~d~tp~~~v-----~~~F~~lg~~~~~v-~~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  635 IPSRLDLKDILDM--TPFTVTDLTPMETV-----VDLFRKLGLRQILV-TKNGILLGIITKKDCLRH  693 (696)
T ss_pred             CCCCcCceeeccC--CcccccccCcHHHH-----HHHHHhhCceEEEE-ccCCeeEeeeehHHHHHh
Confidence            3345567788877  78889999999999     99999999888766 458999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	250
4gqv_A	166	Crystal Structure Of Cbs-pair Protein, Cbsx1 From A		5e-79
3sl7_A	180	Crystal Structure Of Cbs-Pair Protein, Cbsx2 From A		2e-67
4gqw_A	152	Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop		4e-67
2cu0_A	486	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		4e-09
2yzq_A	282	Crystal Structure Of Uncharacterized Conserved Prot		9e-09
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		9e-08
3kpb_A	122	Crystal Structure Of The Cbs Domain Pair Of Protein		2e-06
3kpc_A	124	Crystal Structure Of The Cbs Domain Pair Of Protein		2e-06
3kh5_A	280	Crystal Structure Of Protein Mj1225 From Methanocal		4e-06
2yvy_A	278	Crystal Structure Of Magnesium Transporter Mgte Cyt		9e-06
2yvx_A	473	Crystal Structure Of Magnesium Transporter Mgte Len		1e-05
2yvz_A	278	Crystal Structure Of Magnesium Transporter Mgte Cyt		1e-04
4esy_B	170	Crystal Structure Of The Cbs Domain Of Cbs Domain C		3e-04
2o16_A	160	Crystal Structure Of A Putative Acetoin Utilization		4e-04
4esy_A	170	Crystal Structure Of The Cbs Domain Of Cbs Domain C		5e-04
2p9m_A	138	Crystal Structure Of Conserved Hypothetical Protein		6e-04

>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From Arabidopsis Thaliana Length = 166

Iteration: 1
 Score =  290 bits (743), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 143/170 (84%), Positives = 155/170 (91%), Gaps = 5/170 (2%)
Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSD 139
           SGVYTVG+FMT KE+LHVVKPTTTVDEA     LE+LVE RITGFPVID+DWKLVGLVSD
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEA-----LELLVENRITGFPVIDEDWKLVGLVSD 56
Query: 140 YDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETT 199
           YDLLALDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E T
Sbjct: 57  YDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKT 116
Query: 200 NLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 249
           NLEDAA++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQIK + +  A
Sbjct: 117 NLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRNA 166

>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score =  251 bits (642), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/164 (73%), Positives = 145/164 (88%), Gaps = 5/164 (3%)
Query: 83  YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
           YTVGDF T ++ LHVVKP+T+VD+A     LE+LVEK++TG PVIDD+W LVG+VSDYDL
Sbjct: 4   YTVGDFXTPRQNLHVVKPSTSVDDA-----LELLVEKKVTGLPVIDDNWTLVGVVSDYDL 58
Query: 143 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 202
           LALDSISG  + D ++FP+VDSTWKTFNE+QKL+SKT GK+VGDL TP+P+VVR++TNLE
Sbjct: 59  LALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLXTPSPLVVRDSTNLE 118
Query: 203 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 246
           DAARLLLETK+RRLPVVDADGKL+GI+TRGNVVRAALQIK   +
Sbjct: 119 DAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNAD 162

>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop Deletion) From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  251 bits (640), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 130/170 (76%), Positives = 141/170 (82%), Gaps = 19/170 (11%)
Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSD 139
           SGVYTVG+FMT KE+LHVVKPTTTVDEA     LE+LVE RITGFPVID+DWKLVGLVSD
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEA-----LELLVENRITGFPVIDEDWKLVGLVSD 56
Query: 140 YDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETT 199
           YDLLALDS               DSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E T
Sbjct: 57  YDLLALDS--------------GDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKT 102
Query: 200 NLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 249
           NLEDAA++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQIK + +  A
Sbjct: 103 NLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRNA 152

>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 42/144 (29%)
Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGS 151
           E++  + P  TVD A        L+EK  I G PV++D+ K+VG+++  D+ A +     
Sbjct: 101 EDVITIAPDETVDFAL------FLMEKHGIDGLPVVEDE-KVVGIITKKDIAARE----- 148
Query: 152 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLET 211
                                        GK+V +LMT   + V E+  +E+A ++++E 
Sbjct: 149 -----------------------------GKLVKELMTKEVITVPESIEVEEALKIMIEN 179
Query: 212 KYRRLPVVDADGKLVGIITRGNVV 235
           +  RLPVVD  GKLVG+IT  ++V
Sbjct: 180 RIDRLPVVDERGKLVGLITMSDLV 203

>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Pyrococcus Horikoshii Length = 282

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 33/125 (26%)
Query: 112 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE 171
           ALE+  + ++  FPV++ + KLVG++S                                 
Sbjct: 23  ALELFKKYKVRSFPVVNKEGKLVGIIS--------------------------------- 49
Query: 172 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 231
           V+++L   + + +  L+     VV+E   L+ AA+L+LE  YRR+ VVD+ GK VGI+T 
Sbjct: 50  VKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTV 109
Query: 232 GNVVR 236
           G+++R
Sbjct: 110 GDIIR 114

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 34/136 (25%)
Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
           +  P T   +  V  A++++ E +I G PV+D++ +LVGL+++ D+              
Sbjct: 102 IYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV-------------- 147
Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYR 214
                           +K LSK     + DLMTP    +V     +LE A  +L + +  
Sbjct: 148 --------------RFEKNLSKK----IKDLMTPREKLIVAPPDISLEKAKEILHQHRIE 189
Query: 215 RLPVVDADGKLVGIIT 230
           +LP+V  D KLVG+IT
Sbjct: 190 KLPLVSKDNKLVGLIT 205

>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100 In Complex With 5 -Methylthioadenosine And S-Adenosyl-L- Methionine. Length = 122

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 242
           +V D+++  P+      ++ +AA++L++     LP+VD  GKLVGIIT  ++ +A  Q K
Sbjct: 2   LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 61
Query: 243 HATE 246
              E
Sbjct: 62  KTIE 65

>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100 In Complex With 5 -Methylthioadenosine And S-Adenosyl-L- Methionine Length = 124

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 242
           +V D+++  P+      ++ +AA++L++     LP+VD  GKLVGIIT  ++ +A  Q K
Sbjct: 4   LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 63
Query: 243 HATE 246
              E
Sbjct: 64  KTIE 67

>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From Methanocaldococcus Jannaschii, A Putative Archaeal Homolog Of G-Ampk. Length = 280

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 34/145 (23%)
Query: 92  KEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS 151
           +E +  +K    +DEA     +E  + K + G P+++D+ +L+ L+++ D++        
Sbjct: 91  EENVITLKENADIDEA-----IETFLTKNVGGAPIVNDENQLISLITERDVIR------- 138
Query: 152 GRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLET 211
                ++  ++D      NEV           + D +T   +V      L+D AR ++  
Sbjct: 139 -----ALLDKIDE-----NEV-----------IDDYITRDVIVATPGERLKDVARTMVRN 177
Query: 212 KYRRLPVVDADGKLVGIITRGNVVR 236
            +RRLPVV ++G+LVGIIT  + ++
Sbjct: 178 GFRRLPVV-SEGRLVGIITSTDFIK 201

>pdb|2YVY|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic Domain, Mg2+ Bound Form Length = 278

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235
           V ++M P  V VR  T+ E+ ARL+ +  +  LPVVD +G+LVGI+T  +V+
Sbjct: 201 VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 252

>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Length = 473

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235
           V ++M P  V VR  T+ E+ ARL+ +  +  LPVVD +G+LVGI+T  +V+
Sbjct: 221 VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 272

>pdb|2YVZ|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic Domain, Mg2+-Free Form Length = 278

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235
           V ++  P  V VR  T+ E+ ARL  +  +  LPVVD +G+LVGI+T  +V+
Sbjct: 201 VAEIXNPKVVYVRTDTDQEEVARLXADYDFTVLPVVDEEGRLVGIVTVDDVL 252

>pdb|4ESY|B Chain B, Crystal Structure Of The Cbs Domain Of Cbs Domain Containing Membrane Protein From Sphaerobacter Thermophilus Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ--I 241
           + D++T   V VRE   L+  A+  LE +    PVVD +G LVGIIT  + +R ++   I
Sbjct: 20  IRDILTSPVVTVREDDTLDAVAKTXLEHQIGXAPVVDQNGHLVGIITESDFLRGSIPFWI 79
Query: 242 KHATEM 247
             A+E+
Sbjct: 80  YEASEI 85

>pdb|2O16|A Chain A, Crystal Structure Of A Putative Acetoin Utilization Protein (Acub) From Vibrio Cholerae Length = 160

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           V D+MT  P  +  T  L DA  L+     R +P+VDA+ KL+GI+++ +++ A
Sbjct: 7   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAA 60

>pdb|4ESY|A Chain A, Crystal Structure Of The Cbs Domain Of Cbs Domain Containing Membrane Protein From Sphaerobacter Thermophilus Length = 170

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ--I 241
           + D++T   V VRE   L+  A+  LE +    PVVD +G LVGIIT  + +R ++   I
Sbjct: 20  IRDILTSPVVTVREDDTLDAVAKTXLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWI 79
Query: 242 KHATEM 247
             A+E+
Sbjct: 80  YEASEI 85

>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922 From Methanocaldococcus Jannaschii Dsm 2661 Length = 138

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 32/138 (23%)
Query: 109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 168
           V  A E  ++ +I+  PVIDD+ K++G+V+  D+                          
Sbjct: 27  VVEAFEKXLKYKISSLPVIDDENKVIGIVTTTDI-------------------------G 61
Query: 169 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL-----LETKYRRLPVVDADG 223
           +N ++     T    +GD+ T   + + E  ++ +A +        E    +LPVVD + 
Sbjct: 62  YNLIRD--KYTLETTIGDVXTKDVITIHEDASILEAIKKXDISGKKEEIINQLPVVDKNN 119
Query: 224 KLVGIITRGNVVRAALQI 241
           KLVGII+ G+++R   +I
Sbjct: 120 KLVGIISDGDIIRTISKI 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	4e-60
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	4e-14
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	4e-46
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-17
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	7e-39
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	5e-16
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	3e-38
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	4e-15
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	7e-38
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	4e-16
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-37
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	8e-16
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-35
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-35
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-15
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-34
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-33
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	3e-15
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-32
1pvm_A	184	Conserved hypothetical protein TA0289; structural	4e-14
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	2e-32
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	3e-31
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	6e-16
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-09
1pbj_A	125	Hypothetical protein; structural genomics, domain,	7e-31
1vr9_A	213	CBS domain protein/ACT domain protein; structural	9e-31
1vr9_A	213	CBS domain protein/ACT domain protein; structural	7e-10
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-30
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	4e-30
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-29
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-26
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-11
3ddj_A	296	CBS domain-containing protein; structural genomics	4e-28
3ddj_A	296	CBS domain-containing protein; structural genomics	7e-26
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	9e-28
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-24
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	1e-27
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	5e-27
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	6e-14
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-13
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	5e-27
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-16
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	5e-26
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-25
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-24
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-22
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	9e-22
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-12
4fry_A	157	Putative signal-transduction protein with CBS DOM;	3e-24
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	4e-24
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	8e-08
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	1e-22
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	2e-10
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	6e-21
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	5e-19
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	4e-11
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-06
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	2e-16
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	9e-05
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	1e-15
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	1e-06
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	8e-05
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	3e-15
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	1e-06
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	5e-05
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	3e-15
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	9e-07
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	8e-15
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	5e-07
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	3e-14
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	5e-05
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	4e-14
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	5e-05
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	3e-13
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	2e-11
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	4e-11
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	5e-11
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	9e-11
2oux_A	286	Magnesium transporter; 10001B, structural genomics	3e-10
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	3e-10
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	7e-10
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	6e-08
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-06
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	1e-05
3fio_A	70	A cystathionine beta-synthase domain protein fused	9e-05
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	4e-04
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	7e-04

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score =  186 bits (475), Expect = 4e-60
 Identities = 122/164 (74%), Positives = 147/164 (89%), Gaps = 5/164 (3%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
           YTVGDFMT ++ LHVVKP+T+VD+A     LE+LVEK++TG PVIDD+W LVG+VSDYDL
Sbjct: 4   YTVGDFMTPRQNLHVVKPSTSVDDA-----LELLVEKKVTGLPVIDDNWTLVGVVSDYDL 58

Query: 143 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 202
           LALDSISG  + D ++FP+VDSTWKTFNE+QKL+SKT GK+VGDLMTP+P+VVR++TNLE
Sbjct: 59  LALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLE 118

Query: 203 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 246
           DAARLLLETK+RRLPVVDADGKL+GI+TRGNVVRAALQIK   +
Sbjct: 119 DAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNAD 162

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 67.4 bits (165), Expect = 4e-14
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 15/89 (16%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            VGD MT      VV+ +T +++A       +L+E +    PV+D D KL+G+++  +++
Sbjct: 99  VVGDLMTP--SPLVVRDSTNLEDA-----ARLLLETKFRRLPVVDADGKLIGILTRGNVV 151

Query: 144 --------ALDSISGSGRADNSMFPEVDS 164
                     DSISG  + D ++FP+VDS
Sbjct: 152 RAALQIKRNADSISGRSQNDTNLFPDVDS 180

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score =  150 bits (380), Expect = 4e-46
 Identities = 35/161 (21%), Positives = 73/161 (45%), Gaps = 20/161 (12%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYD 141
           V  V   ++   +  VV+  T ++E      ++ ++E  +T    +  D KLVG++    
Sbjct: 15  VKDVCKLISL--KPTVVEEDTPIEEI-----VDRILEDPVTRTVYVARDNKLVGMIPVMH 67

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNL 201
           LL          +    F  +       + +++L++K       ++M   PV V   T L
Sbjct: 68  LLK--------VSGFHFFGFIPKEELIRSSMKRLIAKN----ASEIML-DPVYVHMDTPL 114

Query: 202 EDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 242
           E+A +L+++   + +PVVD  G++VG +    ++ A  + +
Sbjct: 115 EEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR 155

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query: 170 NEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGII 229
           +++         K V  L++  P VV E T +E+    +LE    R   V  D KLVG+I
Sbjct: 4   DKIHHHHHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMI 63

Query: 230 TRGNVVRAA 238
              ++++ +
Sbjct: 64  PVMHLLKVS 72

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score =  131 bits (332), Expect = 7e-39
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 29/165 (17%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           TV  F+   +++  V+P   +D A     L +L +   +  PV+D  +KL GL+S   ++
Sbjct: 12  TVKPFLIPADKVAHVQPGNYLDHA-----LLVLTKTGYSAIPVLDTSYKLHGLISMTMMM 66

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                                        +    +     V ++M      +R   +L  
Sbjct: 67  ----------------------DAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMK 104

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMG 248
           A  L++   +  + V + DG   GI TR  V++   +  H    G
Sbjct: 105 AVGLIVN--HPFVCVENDDGYFAGIFTRREVLKQLNKQLHRPNGG 147

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 72.1 bits (177), Expect = 5e-16
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 171 EVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGI 228
           E  + +  T    V   + PA     V+    L+ A  +L +T Y  +PV+D   KL G+
Sbjct: 4   EHNEFMQMT----VKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGL 59

Query: 229 ITRGNVVRAALQIKH 243
           I+   ++ A L ++ 
Sbjct: 60  ISMTMMMDAILGLER 74

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score =  129 bits (325), Expect = 7e-38
 Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 29/154 (18%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V D M + E++  V+    ++ A     L +LV+   +  PV+D  +KL GL+S   + 
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHA-----LLVLVKSGYSAIPVLDPMYKLHGLISTAMI- 69

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
            LD I G  R +     E+                     V  +M     V++   +   
Sbjct: 70  -LDGILGLERIEFERLEEMK--------------------VEQVMKQDIPVLKLEDSFAK 108

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           A  + ++  +  +  V+ DG   GI+TR  +++ 
Sbjct: 109 ALEMTID--HPFICAVNEDGYFEGILTRRAILKL 140

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 72.0 bits (177), Expect = 4e-16
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 15/90 (16%)

Query: 156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVV--VRETTNLEDAARLLLETKY 213
           N+M           +E Q++        V DLM  +  V  V+    LE A  +L+++ Y
Sbjct: 2   NAMI------SIPKDEFQQIF-------VKDLMISSEKVAHVQIGNGLEHALLVLVKSGY 48

Query: 214 RRLPVVDADGKLVGIITRGNVVRAALQIKH 243
             +PV+D   KL G+I+   ++   L ++ 
Sbjct: 49  SAIPVLDPMYKLHGLISTAMILDGILGLER 78

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score =  128 bits (324), Expect = 1e-37
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 29/160 (18%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           TVG FM   +++  V+    ++ A     L +L +   T  PV+D  ++L GL+    ++
Sbjct: 15  TVGQFMIEADKVAHVQVGNNLEHA-----LLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM 69

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                                    F   +    K +   V ++M      +     +  
Sbjct: 70  ----------------------NSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMK 107

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
              +++      + V + +    GI TR  V++   +   
Sbjct: 108 GFGMVIN--NGFVCVENDEQVFEGIFTRRVVLKELNKHIR 145

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 71.7 bits (176), Expect = 8e-16
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 171 EVQKLLSKTNGKMVGDLMTPAPVV--VRETTNLEDAARLLLETKYRRLPVVDADGKLVGI 228
           +  +LL  T    VG  M  A  V  V+   NLE A  +L +T Y  +PV+D   +L G+
Sbjct: 7   QSDQLLEAT----VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGL 62

Query: 229 ITRGNVVRAALQIKHA 244
           I    ++ +   ++  
Sbjct: 63  IGTNMIMNSIFGLERI 78

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  122 bits (309), Expect = 2e-35
 Identities = 29/157 (18%), Positives = 67/157 (42%), Gaps = 26/157 (16%)

Query: 84  TVGDF-MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
            +GD  + T++ +   + TT V +      +++L + R++  P+ID++  L+ +   YD+
Sbjct: 9   PIGDLNIITQDNMKSCQMTTPVIDV-----IQMLTQGRVSSVPIIDENGYLINVYEAYDV 63

Query: 143 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 202
           L L            ++ ++  +      V + L + +                +   L 
Sbjct: 64  LGL--------IKGGIYNDLSLS------VGEALMRRSD------DFEGVYTCTKNDKLS 103

Query: 203 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239
                + + +  R  VVD  G+LVG++T  ++++  L
Sbjct: 104 TIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 140

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score =  122 bits (309), Expect = 2e-35
 Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 27/166 (16%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V D MT     H +  T T+++A       ++    I   P++D + KL+G+VS  DLL
Sbjct: 6   KVEDMMTR--HPHTLLRTHTLNDA-----KHLMEALDIRHVPIVDANKKLLGIVSQRDLL 58

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
           A                  +S+ +   +   L  +T    + ++M      V     L++
Sbjct: 59  A----------------AQESSLQRSAQGDSLAFETP---LFEVMHTDVTSVAPQAGLKE 99

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 249
           +A  + + K   LPVV     LVGIIT  + V  A+ +    E   
Sbjct: 100 SAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLLELQEESE 144

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 182 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
             V D+MT  P  +  T  L DA  L+     R +P+VDA+ KL+GI+++ +++ A
Sbjct: 5   IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAA 60

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score =  116 bits (294), Expect = 2e-33
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 39/163 (23%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V D MT    +   K    V EA      E +++ +I+  PVIDD+ K++G+V+  D+ 
Sbjct: 9   KVKDVMTKN--VITAKRHEGVVEA-----FEKMLKYKISSLPVIDDENKVIGIVTTTDIG 61

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                                        +  L  T    +GD+MT   + + E  ++ +
Sbjct: 62  -----------------------YNLIRDKYTLETT----IGDVMTKDVITIHEDASILE 94

Query: 204 AARLLL-----ETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241
           A + +      E    +LPVVD + KLVGII+ G+++R   +I
Sbjct: 95  AIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI 137

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 17/64 (26%), Positives = 34/64 (53%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
           V D+MT   +  +    + +A   +L+ K   LPV+D + K++GI+T  ++    ++ K+
Sbjct: 10  VKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKY 69

Query: 244 ATEM 247
             E 
Sbjct: 70  TLET 73

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score =  115 bits (291), Expect = 2e-32
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 33/154 (21%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V   M +      V   TTV +A     ++I+ E  + G  V DD+   VGL+S+  ++
Sbjct: 10  RVEKIMNS--NFKTVNWNTTVFDA-----VKIMNENHLYGLVVKDDNGNDVGLLSERSII 62

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                                  +     +K         +  +M      V+   +++D
Sbjct: 63  ----------------------KRFIPRNKKPDEVP----IRLVMRKPIPKVKSDYDVKD 96

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
            A  L E    R  VVD  G++VGI+T  ++ R 
Sbjct: 97  VAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY 130

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239
           V  +M      V   T + DA +++ E     L V D +G  VG+++  ++++  +
Sbjct: 11  VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI 66

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score =  115 bits (290), Expect = 2e-32
 Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 11/164 (6%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD--WKLVGLVSDYD 141
              D M  +    ++    T D   V     I+ E   +GFPV+      +LVG V   D
Sbjct: 12  LAMDVMKPRRNDPLL-TVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRD 70

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM--VGDLMTPAPVVVRETT 199
           L+          A       V ++   F E    L         + +++  +P  V + T
Sbjct: 71  LIISIE-----NARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLT 125

Query: 200 NLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
            +E    +  +   R+  V   +G+L+GIIT+ +V++   Q+ +
Sbjct: 126 PMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMAN 168

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score =  111 bits (279), Expect = 3e-31
 Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 38/153 (24%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
           V D ++            ++ EA      +IL++  I   P++D+  KLVG+++ +D+  
Sbjct: 3   VKDILSKP--PITAHSNISIMEA-----AKILIKHNINHLPIVDEHGKLVGIITSWDIA- 54

Query: 145 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 204
                   +A                         N K + ++MT   +   E   ++  
Sbjct: 55  --------KA----------------------LAQNKKTIEEIMTRNVITAHEDEPVDHV 84

Query: 205 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           A  + +     +PVVD   ++VGI+T  ++ R 
Sbjct: 85  AIKMSKYNISGVPVVDDYRRVVGIVTSEDISRL 117

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 71.0 bits (175), Expect = 6e-16
 Identities = 19/55 (34%), Positives = 35/55 (63%)

Query: 183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           +V D+++  P+      ++ +AA++L++     LP+VD  GKLVGIIT  ++ +A
Sbjct: 2   LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKA 56

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           T+ + MT    +        VD          + +  I+G PV+DD  ++VG+V+  D+ 
Sbjct: 63  TIEEIMT--RNVITAHEDEPVDHV-----AIKMSKYNISGVPVVDDYRRVVGIVTSEDIS 115

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score =  109 bits (276), Expect = 7e-31
 Identities = 29/160 (18%), Positives = 64/160 (40%), Gaps = 36/160 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V D M T  ++  +  T ++++      L   VE       V+ +    VG+V+ +D+L
Sbjct: 2   RVEDVMVT--DVDTIDITASLEDV-----LRNYVENAKGSSVVVKEG-VRVGIVTTWDVL 53

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                                  +   E   L        V ++M    V +     +++
Sbjct: 54  -----------------------EAIAEGDDLAEVK----VWEVMERDLVTISPRATIKE 86

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
           AA  +++    RL V + D +++G+I+  +++RA +  ++
Sbjct: 87  AAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAKMAKRY 125

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score =  112 bits (282), Expect = 9e-31
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 40/167 (23%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V  ++T   +  +V+ + TV E      L  + + +     V D +    G+V+  DLL
Sbjct: 14  KVKKWVTQ--DFPMVEESATVREC-----LHRMRQYQTNECIVKDREGHFRGVVNKEDLL 66

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
            LD                                     V + ++     V E  N+  
Sbjct: 67  DLD---------------------------------LDSSVFNKVSLPDFFVHEEDNITH 93

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGAQ 250
           A  L LE +   LPVVD + +L G ++  + + A ++       G +
Sbjct: 94  ALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALAMDVPGIR 140

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 56.3 bits (136), Expect = 7e-10
 Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 14/147 (9%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           +V + ++       V     +  A     L + +E +    PV+D++ +L G VS +D L
Sbjct: 73  SVFNKVSL--PDFFVHEEDNITHA-----LLLFLEHQEPYLPVVDEEMRLKGAVSLHDFL 125

Query: 144 -ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP-----VVVR- 196
            AL                ++       +V   L+ +N  ++  + T +      V+++ 
Sbjct: 126 EALIEALAMDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITTRSGDGKREVLIKV 185

Query: 197 ETTNLEDAARLLLETKYRRLPVVDADG 223
           +  +     +L      +   +   +G
Sbjct: 186 DAVDEGTLIKLFESLGIKIESIEKEEG 212

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score =  108 bits (272), Expect = 3e-30
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 36/161 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           T  D M     +  V    T+  A      + + E  I   P+  DD +L G+++D D++
Sbjct: 9   TARDIMNA--GVTCVGEHETLTAA-----AQYMREHDIGALPICGDDDRLHGMLTDRDIV 61

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                                      +        N    G+L   +   V    ++++
Sbjct: 62  --------------------------IKGLAAGLDPNTATAGELARDSIYYVDANASIQE 95

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA 244
              ++ E + RR+PV+  + +LVGI+T  ++ R     +HA
Sbjct: 96  MLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH--LPEHA 133

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score =  108 bits (272), Expect = 4e-30
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 38/155 (24%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V ++M T  ++  V     +++       +++ EK I    V+D + K VG++++ D+ 
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDI-----AKVMTEKNIGSVIVVDGN-KPVGIITERDI- 55

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLE 202
                                       V+ +    + +    + MT + + +RE + + 
Sbjct: 56  ----------------------------VKAIGKGKSLETKAEEFMTASLITIREDSPIT 87

Query: 203 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
            A  L+ +   R LPVVD  G L GII+  ++ RA
Sbjct: 88  GALALMRQFNIRHLPVVDDKGNLKGIISIRDITRA 122

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  110 bits (276), Expect = 4e-29
 Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 24/156 (15%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYD 141
              + D++T   ++ V  P   + +         +V       PV+ +  +LVG+++  D
Sbjct: 147 NEVIDDYITR--DVIVATPGERLKDV-----ARTMVRNGFRRLPVVSEG-RLVGIITSTD 198

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNL 201
            + L                + S W   +     + +     + ++M    +  +E   L
Sbjct: 199 FIKL----------------LGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKL 242

Query: 202 EDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           +  A +++      LPVVD + ++ GIIT  +V++ 
Sbjct: 243 KKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKY 278

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  101 bits (254), Expect = 4e-26
 Identities = 28/154 (18%), Positives = 64/154 (41%), Gaps = 21/154 (13%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVID-DDWKLVGLVSDYDLL 143
           +      K  +  V PTTT+ +A     L  + E +    PV++  + K+VG+++  D++
Sbjct: 6   MKIAQNKK--IVTVYPTTTIRKA-----LMTMNENKYRRLPVVNAGNNKVVGIITSMDIV 58

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                                      + ++       + V ++M    + ++E  ++++
Sbjct: 59  DF-------------MGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDE 105

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           A    L       P+V+ + +L+ +IT  +V+RA
Sbjct: 106 AIETFLTKNVGGAPIVNDENQLISLITERDVIRA 139

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 182 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVRA 237
           +++        V V  TT +  A   + E KYRRLPVV+A + K+VGIIT  ++V  
Sbjct: 4   RVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDF 60

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  107 bits (269), Expect = 4e-28
 Identities = 35/165 (21%), Positives = 72/165 (43%), Gaps = 28/165 (16%)

Query: 77  APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGL 136
                ++ V  FM+TK  +  +     +D+A     +++++ +     PVIDDD K+VG+
Sbjct: 150 KDLDEIFPVKVFMSTK--VQTIYKEVRLDQA-----VKLMLRRGFRRLPVIDDDNKVVGI 202

Query: 137 VSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVR 196
           V+  + +         +       ++D  +              GK+V D+M    V + 
Sbjct: 203 VTVVNAI---------KQLAKAVDKLDPDYFY------------GKVVKDVMVTNLVTID 241

Query: 197 ETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241
           E  ++  AA  ++  +   L +++ D  + GIIT  +++ A   I
Sbjct: 242 ELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI 286

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score =  101 bits (254), Expect = 7e-26
 Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 26/160 (16%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            +   M       ++     +  A      + + E  I    V ++  K+ GL++  DLL
Sbjct: 21  NIETLMIK--NPPILSKEDRLGSA-----FKKINEGGIGRIIVANE--KIEGLLTTRDLL 71

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                                ++   +  Q  L   +   + D MTP PV V  T++   
Sbjct: 72  -----------------STVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFT 114

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
           A  +++   +  LPVVD + K VGI+T    +     +  
Sbjct: 115 AINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDE 154

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  107 bits (268), Expect = 9e-28
 Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 27/207 (13%)

Query: 35  CLLLSRPGCRVFSVLATSSDRVSA-LRRSSAVFASGTLTANSAAPSSGVYTVGDFMT-TK 92
              L R       V+   S      L     +            P     ++ +    T 
Sbjct: 141 VSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTY 200

Query: 93  EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG 152
             + +V+ TT V  A     L I V+ R++  PV+D+  ++V + S +D++ L       
Sbjct: 201 ANIAMVRTTTPVYVA-----LGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL------- 248

Query: 153 RADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK 212
            A    +  +D +     + +                   +       LE     L+E +
Sbjct: 249 -AAEKTYNNLDVSVTKALQHR------------SHYFEGVLKCYLHETLEAIINRLVEAE 295

Query: 213 YRRLPVVDADGKLVGIITRGNVVRAAL 239
             RL VVD    + GI++  ++++A +
Sbjct: 296 VHRLVVVDEHDVVKGIVSLSDILQALV 322

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 98.1 bits (244), Expect = 3e-24
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 19/157 (12%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVID-DDWKLVGLVSDYD 141
           +   D + T  +L V   +  V +AF       LV   +   P+ D      VG+++  D
Sbjct: 35  HRCYDLIPTSSKLVVFDTSLQVKKAF-----FALVTNGVRAAPLWDSKKQSFVGMLTITD 89

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNL 201
            + +            +     S      E+++   +T  ++         V +    +L
Sbjct: 90  FINI------------LHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASL 137

Query: 202 EDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRA 237
            DA   L+  K  RLPV+D + G  + I+T   +++ 
Sbjct: 138 FDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF 174

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score =  102 bits (256), Expect = 1e-27
 Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 35/157 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            +  +MT K  L  VKP+T+V EA       +++E  +    VI+DD  +VG  +  D+ 
Sbjct: 8   PIKVYMTKK--LLGVKPSTSVQEA-----SRLMMEFDVGSLVVINDDGNVVGFFTKSDI- 59

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                         + P +                     V  +MT   +     T L +
Sbjct: 60  ----------IRRVIVPGLPYDIP----------------VERIMTRNLITANVNTPLGE 93

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
             R + E + + + + + +GK+VGI T  +++ A+ +
Sbjct: 94  VLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRR 129

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  105 bits (263), Expect = 5e-27
 Identities = 25/151 (16%), Positives = 59/151 (39%), Gaps = 25/151 (16%)

Query: 89  MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 148
           + T++ +   + TT V +       ++L + R++  P+ID++  L+ +   YD+L L   
Sbjct: 194 IITQDNMKSCQMTTPVIDVI-----QMLTQGRVSSVPIIDENGYLINVYEAYDVLGL--- 245

Query: 149 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 208
                    ++ ++  +       +                       +   L      +
Sbjct: 246 -----IKGGIYNDLSLSVGEALMRRSD------------DFEGVYTCTKNDKLSTIMDNI 288

Query: 209 LETKYRRLPVVDADGKLVGIITRGNVVRAAL 239
            + +  R  VVD  G+LVG++T  ++++  L
Sbjct: 289 RKARVHRFFVVDDVGRLVGVLTLSDILKYIL 319

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 69.2 bits (169), Expect = 6e-14
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 31/143 (21%)

Query: 94  ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLALDSI 148
           +   + P+  + EA        ++E R    P+ID D       +V +++ Y +L     
Sbjct: 123 DTASIHPSRPLFEA-----CLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILK---- 173

Query: 149 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 208
                            +   N  +    K     +  +        + TT + D  ++L
Sbjct: 174 -----------------FVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQML 216

Query: 209 LETKYRRLPVVDADGKLVGIITR 231
            + +   +P++D +G L+ +   
Sbjct: 217 TQGRVSSVPIIDENGYLINVYEA 239

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 68.4 bits (167), Expect = 1e-13
 Identities = 24/161 (14%), Positives = 60/161 (37%), Gaps = 22/161 (13%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVID-DDWKLVGLVSDYD 141
            T  D +     L V+  +  V ++       +L++  I   P+ D    +  GL++  D
Sbjct: 30  KTSYDVLPVSYRLIVLDTSLLVKKSL-----NVLLQNSIVSAPLWDSKTSRFAGLLTTTD 84

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNL 201
            + +     S      +  +            +L    + +    +       +  +  L
Sbjct: 85  FINVIQYYFSNPDKFELVDK-----------LQLDGLKDIERALGVDQLDTASIHPSRPL 133

Query: 202 EDAARLLLETKYRRLPVVDAD-----GKLVGIITRGNVVRA 237
            +A   +LE++  R+P++D D       +V ++T+  +++ 
Sbjct: 134 FEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKF 174

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score =  101 bits (253), Expect = 5e-27
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 40/164 (24%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V DF +      V+    +V +A     +  +  + +    V+D D  LVG++S  DLL
Sbjct: 18  QVKDFQSIP---VVIHENVSVYDA-----ICTMFLEDVGTLFVVDRDAVLVGVLSRKDLL 69

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNL 201
                                  +     Q+L S      V  +MT  P   V R    +
Sbjct: 70  -----------------------RASIGQQELTSVP----VHIIMTRMPNITVCRREDYV 102

Query: 202 EDAARLLLETKYRRLPVVDADG---KLVGIITRGNVVRAALQIK 242
            D A+ L+E +   LPV+       +++G +T+ N+ +  + + 
Sbjct: 103 MDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLS 146

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 168 TFNEVQKLLSKTNGKM-VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLV 226
           T     +LL+    K+ V D  +  PVV+ E  ++ DA   +       L VVD D  LV
Sbjct: 2   TGKTGTQLLADKLKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLV 60

Query: 227 GIITRGNVVRAALQIKHATEM 247
           G+++R +++RA++  +  T +
Sbjct: 61  GVLSRKDLLRASIGQQELTSV 81

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 98.1 bits (245), Expect = 5e-26
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 34/162 (20%)

Query: 80  SGVYTVGDFMTTK-EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVS 138
             + TV   +  K   +  + P  +V  A     ++ +    I    V+ D+ KLVG+++
Sbjct: 3   GHMKTVKHLLQEKGHTVVAIGPDDSVFNA-----MQKMAADNIGALLVMKDE-KLVGILT 56

Query: 139 DYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRET 198
           + D           +                              V ++MT     V   
Sbjct: 57  ERDFS--RKSYLLDKPVKDT------------------------QVKEIMTRQVAYVDLN 90

Query: 199 TNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
              ED   L+ E + R LPV+D DGK++G+++ G++V+ A+ 
Sbjct: 91  NTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 131

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 97.0 bits (242), Expect = 2e-25
 Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 33/158 (20%)

Query: 84  TVGDFMTTK-EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
            V D +  K  ++  V P  ++ EA        L   +I    V D D  ++G+ ++ DL
Sbjct: 25  FVKDLLDRKGRDVVTVGPDVSIGEA-----AGTLHAHKIGAVVVTDADGVVLGIFTERDL 79

Query: 143 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 202
           +   +++G G A                             V   MT   V  +  +  +
Sbjct: 80  VK--AVAGQGAASLQQ------------------------SVSVAMTKNVVRCQHNSTTD 113

Query: 203 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
               ++   ++R +PV + +G+L GII+ G+VV+A + 
Sbjct: 114 QLMEIMTGGRFRHVPVEE-NGRLAGIISIGDVVKARIG 150

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 97.2 bits (242), Expect = 3e-24
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 40/156 (25%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
           V   MT       +    T + A     LE+  + ++  FPV++ + KLVG++S   +L 
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYA-----LELFKKYKVRSFPVVNKEGKLVGIISVKRIL- 54

Query: 145 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 204
                                              + + +  L+     VV+E   L+ A
Sbjct: 55  --------------------------------VNPDEEQLAMLVKRDVPVVKENDTLKKA 82

Query: 205 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
           A+L+LE  YRR+ VVD+ GK VGI+T G+++R    
Sbjct: 83  AKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA 118

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 91.4 bits (227), Expect = 3e-22
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            +  +      + +V   T +  A     L+ L+       PV+D +  LVG+V + DLL
Sbjct: 127 EIEPYYQRY--VSIVWEGTPLKAA-----LKALLLSNSMALPVVDSEGNLVGIVDETDLL 179

Query: 144 ----ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETT 199
                +  +  +  A +S    +  +  T    +  L   N   V ++MT   +V     
Sbjct: 180 RDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKP-VAEIMTRDVIVATPHM 238

Query: 200 NLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
            + + A  + +    +LPV+  +G L+G+I   ++++ 
Sbjct: 239 TVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV 276

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 90.2 bits (224), Expect = 9e-22
 Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 33/154 (21%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
           +   +    ++ VVK   T+ +A      ++++E       V+D   K VG+++  D++ 
Sbjct: 62  LAMLVK--RDVPVVKENDTLKKA-----AKLMLEYDYRRVVVVDSKGKPVGILTVGDIIR 114

Query: 145 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 204
                                            K  G  +         +V E T L+ A
Sbjct: 115 R--------------------------YFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAA 148

Query: 205 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 238
            + LL +    LPVVD++G LVGI+   +++R +
Sbjct: 149 LKALLLSNSMALPVVDSEGNLVGIVDETDLLRDS 182

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 64.0 bits (156), Expect = 3e-12
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
           V  +MT  PV +        A  L  + K R  PVV+ +GKLVGII+   ++    + + 
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQL 62

Query: 244 ATEM 247
           A  +
Sbjct: 63  AMLV 66

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 93.9 bits (234), Expect = 3e-24
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 37/168 (22%)

Query: 77  APSSGVYTVGDFMTTKE----ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWK 132
            P S   TV   +  K      ++ V     V +A     ++++ EK I    V+D D  
Sbjct: 1   GPGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDA-----IKLMAEKGIGALLVVDGD-D 54

Query: 133 LVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP 192
           + G+V++ D      +    R+  +                          V ++MT   
Sbjct: 55  IAGIVTERDYAR--KVVLQERSSKAT------------------------RVEEIMTAKV 88

Query: 193 VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
             V  + + ++   L+ E + R LPV+D  GKL+G+I+ G++V++ + 
Sbjct: 89  RYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIA 135

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 92.5 bits (230), Expect = 4e-24
 Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 36/154 (23%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           T      T  +  V     +  +A        L        PV+D + + +G+V    LL
Sbjct: 6   TFSYLAET--DYPVFTLGGSTADA-----ARRLAASGCACAPVLDGE-RYLGMVHLSRLL 57

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                  + +                            + +G+ +       R    L D
Sbjct: 58  EGRKGWPTVK----------------------------EKLGEELLETVRSYRPGEQLFD 89

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
               +   K   +P+ D DG+  G+++R  ++  
Sbjct: 90  NLISVAAAKCSVVPLADEDGRYEGVVSRKRILGF 123

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
              L      V     +  DAAR L  +     PV+D   + +G++    ++        
Sbjct: 7   FSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLD-GERYLGMVHLSRLLEGRKGWPT 65

Query: 244 ATE 246
             E
Sbjct: 66  VKE 68

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 89.7 bits (222), Expect = 1e-22
 Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 27/156 (17%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD--DWKLVGLVSDYD 141
            V  FM     +  +   T ++E      ++++    +T +P+++      LVG+V    
Sbjct: 14  RVEHFMNH--SITTLAKDTPLEEV-----VKVVTSTDVTEYPLVESTESQILVGIVQRAQ 66

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNL 201
           L+         RA        D   +                      P  + +   T L
Sbjct: 67  LVQALQAEPPSRAPGHQQCLQDILARGCP-----------------TEPVTLTLFSETTL 109

Query: 202 EDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
             A  L      + L V    G+ VG ++   + +A
Sbjct: 110 HQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKA 144

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA--DGKLVGIITRGNVVRAALQI 241
           V   M  +   + + T LE+  +++  T     P+V++     LVGI+ R  +V+A    
Sbjct: 15  VEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAE 74

Query: 242 KHATEMGAQ 250
             +   G Q
Sbjct: 75  PPSRAPGHQ 83

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 84.6 bits (210), Expect = 6e-21
 Identities = 22/163 (13%), Positives = 55/163 (33%), Gaps = 40/163 (24%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVI--DDDWKLVGLVSDYD 141
              + +        +  T T+ E         L + R+    +   D+  + V +VS+ D
Sbjct: 6   RTSELLKR--PPVSLPETATIREV-----ATELAKNRVGLAVLTARDNPKRPVAVVSERD 58

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN-GKMVGDLMTPAPVVVRETTN 200
           +                             ++ +  + +       +   +P+ V +T  
Sbjct: 59  I-----------------------------LRAVAQRLDLDGPAMPIAN-SPITVLDTDP 88

Query: 201 LEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
           +  AA  +     R + VV+ +G+LVG+++  ++      +  
Sbjct: 89  VHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILLE 131

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 83.8 bits (207), Expect = 5e-19
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 25/147 (17%)

Query: 91  TKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 150
           T   L      T V +      +++L EK I+  P+++ +  L+ +    D++ L     
Sbjct: 191 TWSNLATASMETKVYDV-----IKMLAEKNISAVPIVNSEGTLLNVYESVDVMHL----- 240

Query: 151 SGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLE 210
                +  +  +D +      V + L K      G          R T  L+     +  
Sbjct: 241 ---IQDGDYSNLDLS------VGEALLKRPANFDG------VHTCRATDRLDGIFDAIKH 285

Query: 211 TKYRRLPVVDADGKLVGIITRGNVVRA 237
           ++  RL VVD + KL GI++  +++  
Sbjct: 286 SRVHRLFVVDENLKLEGILSLADILNY 312

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVID-DDWKLVGLVSDYDL 142
           T  D + T   L V   T  V  +       +L    I   P+ D +  K  GL++  D 
Sbjct: 23  TSYDVLPTSFRLIVFDVTLFVKTSL-----SLLTLNNIVSAPLWDSEANKFAGLLTMADF 77

Query: 143 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 202
           + +        +      E+D          +LL     +     + P  + V    +L 
Sbjct: 78  VNVIKYYYQSSSFPEAIAEIDK--------FRLLGLREVERKIGAIPPETIYVHPMHSLM 129

Query: 203 DAARLLLETKYRRLPVVDAD-----GKLVGIITRGNVVR 236
           DA   + +++ RR+P++D D       +V ++T+  +++
Sbjct: 130 DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILK 168

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 26/145 (17%)

Query: 92  KEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLALD 146
           K      +         +  A   + + R    P+ID D       +V +++ Y +L   
Sbjct: 111 KIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFI 170

Query: 147 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 206
           S++    A                    L        +              T + D  +
Sbjct: 171 SMNCKETA---------------MLRVPL------NQMTIGTWSNLATASMETKVYDVIK 209

Query: 207 LLLETKYRRLPVVDADGKLVGIITR 231
           +L E     +P+V+++G L+ +   
Sbjct: 210 MLAEKNISAVPIVNSEGTLLNVYES 234

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 77.2 bits (191), Expect = 2e-16
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 35/134 (26%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
           V    T   +  V  AL ++ +  I G PV++D+ K+VG+++  D+           A  
Sbjct: 100 VEDVITIAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDI----------AARE 148

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 216
                                    K+V +LMT   + V E+  +E+A ++++E +  RL
Sbjct: 149 G------------------------KLVKELMTKEVITVPESIEVEEALKIMIENRIDRL 184

Query: 217 PVVDADGKLVGIIT 230
           PVVD  GKLVG+IT
Sbjct: 185 PVVDERGKLVGLIT 198

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 42.1 bits (100), Expect = 9e-05
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 7/53 (13%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLV 137
           V + MT  +E+  V  +  V+EA     L+I++E RI   PV+D+  KLVGL+
Sbjct: 152 VKELMT--KEVITVPESIEVEEA-----LKIMIENRIDRLPVVDERGKLVGLI 197

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 74.4 bits (184), Expect = 1e-15
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 34/136 (25%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
           V  P T   E  +   +E+       GFPV+ ++ +LVG+++  D+          R   
Sbjct: 96  VTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV----------R--- 142

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYR 214
             F   D T                  V  +MTP      V+E     +    + + +  
Sbjct: 143 --F-VTDLTKS----------------VAAVMTPKERLATVKEGATGAEVQEKMHKARVE 183

Query: 215 RLPVVDADGKLVGIIT 230
           ++ VV+ + +L G+IT
Sbjct: 184 KILVVNDEFQLKGMIT 199

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLV 137
           V   MT KE L  VK   T  E       E + + R+    V++D+++L G++
Sbjct: 151 VAAVMTPKERLATVKEGATGAEV-----QEKMHKARVEKILVVNDEFQLKGMI 198

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 42.5 bits (101), Expect = 8e-05
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
           +V       PV VR    + D   L     +   PVV  + +LVGIIT
Sbjct: 95  VVTH-----PVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIIT 137

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 34/136 (25%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 156
           +  P T   +  V  A++++ E +I G PV+D++ +LVGL+++ D+          R   
Sbjct: 102 IYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV----------R--- 148

Query: 157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYR 214
             F E + + K                + DLMTP    +V     +LE A  +L + +  
Sbjct: 149 --F-EKNLSKK----------------IKDLMTPREKLIVAPPDISLEKAKEILHQHRIE 189

Query: 215 RLPVVDADGKLVGIIT 230
           +LP+V  D KLVG+IT
Sbjct: 190 KLPLVSKDNKLVGLIT 205

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLV 137
           + D MT +E+L V  P  ++++A      EIL + RI   P++  D KLVGL+
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKA-----KEILHQHRIEKLPLVSKDNKLVGLI 204

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 230
           ++ D     P+ V     +++A  L+ E K   LPVVD +G+LVG++T
Sbjct: 101 IIYD-----PITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLT 143

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 73.3 bits (181), Expect = 3e-15
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 40/140 (28%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSISGSGR 153
           V+ P+ TV +      LE  +    +G P+ +      KLVG+V+  D+           
Sbjct: 120 VLSPSHTVGDV-----LEAKMRHGFSGIPITETGTMGSKLVGIVTSRDI----------- 163

Query: 154 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLET 211
                  E D T                  + ++MTP    VV      L++A  +L  +
Sbjct: 164 ---DFLAEKDHTTL----------------LSEVMTPRIELVVAPAGVTLKEANEILQRS 204

Query: 212 KYRRLPVVDADGKLVGIITR 231
           K  +LP+V+   +LV II R
Sbjct: 205 KKGKLPIVNDCDELVAIIAR 224

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 48.3 bits (116), Expect = 9e-07
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
           + + MT + EL V     T+ EA      EIL   +    P+++D  +LV +++  DL
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEA-----NEILQRSKKGKLPIVNDCDELVAIIARTDL 227

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 72.2 bits (178), Expect = 8e-15
 Identities = 31/140 (22%), Positives = 45/140 (32%), Gaps = 36/140 (25%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSISGSGR 153
           VV  +    +      L I          V DD      L+GLV+  D            
Sbjct: 104 VVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDY----------P 153

Query: 154 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLET 211
                     +  K                V D+MTP    V   + T L +A +++ E 
Sbjct: 154 -----IDLTQTETK----------------VSDMMTPFSKLVTAHQDTKLSEANKIIWEK 192

Query: 212 KYRRLPVVDADGKLVGIITR 231
           K   LP++D D  L  I+ R
Sbjct: 193 KLNALPIIDDDQHLRYIVFR 212

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 49.1 bits (118), Expect = 5e-07
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLV 137
           V D MT   +L      T + EA      +I+ EK++   P+IDDD  L  +V
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEA-----NKIIWEKKLNALPIIDDDQHLRYIV 210

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 71.0 bits (175), Expect = 3e-14
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 35/137 (25%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRA 154
           +  P     E  V  A  ++ + RI+G PV++  D+ KLVG++++ D+          R 
Sbjct: 120 ISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM----------R- 168

Query: 155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP-VVVRETTNLEDAARLLLETKY 213
               F   D + K                + D+MT    +     T L +A ++L + K 
Sbjct: 169 ----F-IQDYSIK----------------ISDVMTKEQLITAPVGTTLSEAEKILQKYKI 207

Query: 214 RRLPVVDADGKLVGIIT 230
            +LP+VD +G L G+IT
Sbjct: 208 EKLPLVDNNGVLQGLIT 224

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLV 137
           + D MT KE+L      TT+ EA      +IL + +I   P++D++  L GL+
Sbjct: 177 ISDVMT-KEQLITAPVGTTLSEA-----EKILQKYKIEKLPLVDNNGVLQGLI 223

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 70.2 bits (173), Expect = 4e-14
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 35/137 (25%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRA 154
           ++ P     E  V  A E++   RI+G P+++   + KLVG++++ D+          R 
Sbjct: 97  IIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM----------R- 145

Query: 155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP-VVVRETTNLEDAARLLLETKY 213
               F   D                    + + MT    V     T+LE A R+L E + 
Sbjct: 146 ----F-ISDYNAP----------------ISEHMTSEHLVTAAVGTDLETAERILHEHRI 184

Query: 214 RRLPVVDADGKLVGIIT 230
            +LP+VD  G+L G+IT
Sbjct: 185 EKLPLVDNSGRLSGLIT 201

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 42.8 bits (102), Expect = 5e-05
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLV 137
           + + MT  E L      T ++ A       IL E RI   P++D+  +L GL+
Sbjct: 154 ISEHMT-SEHLVTAAVGTDLETA-----ERILHEHRIEKLPLVDNSGRLSGLI 200

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 30/181 (16%), Positives = 55/181 (30%), Gaps = 27/181 (14%)

Query: 78  PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVE-KRITGFPVIDDDWKLVGL 136
             S   T  + M   E    + P +            IL +      FPVID +  L+G 
Sbjct: 448 DRSPEMTAREIMHPIEGEPHLFPDSEPQHI-----KGILEKFPNRLVFPVIDANGYLLGA 502

Query: 137 VSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL-----------------LSKT 179
           +S  +++           +              +  + +                  + T
Sbjct: 503 ISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTAT 562

Query: 180 NGKMVGDL---MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 236
             +    L      +P+VV   + +     L +      + V +  GKLVGI+ R +V  
Sbjct: 563 VLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE-RGKLVGIVEREDVAY 621

Query: 237 A 237
            
Sbjct: 622 G 622

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 41/150 (27%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
             +G +     ++ V+    TV +A        +         ++D+  K +G V     
Sbjct: 54  NEIGRYTDH--QMLVLSDKATVAQAQ--RFFRRIELDCNDNLFIVDEADKYLGTVR---- 105

Query: 143 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 202
                                           +      + +  L++     +   T L 
Sbjct: 106 -----------------------------RYDIFKHEPHEPLISLLSEDSRALTANTTLL 136

Query: 203 DAARLLLETKYRRL--PVVDADGKLVGIIT 230
           DAA  +     R +  PV+D  G+L+G +T
Sbjct: 137 DAAEAI--EHSREIELPVIDDAGELIGRVT 164

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 41/151 (27%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEAFVPT-ALEILVEKRITGFPVIDDDWKLVGLVSDYD 141
              G  MT   E   V+   TV+E            E  I    V+D+  +L G++S   
Sbjct: 135 DEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAE-TIYYIYVVDEKGRLKGVLS--- 188

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNL 201
                                         ++ L+       V ++M P  V VR  T+ 
Sbjct: 189 ------------------------------LRDLIVADPRTRVAEIMNPKVVYVRTDTDQ 218

Query: 202 EDAARLLLETKYRRL--PVVDADGKLVGIIT 230
           E+ ARL+    Y     PVVD +G+LVGI+T
Sbjct: 219 EEVARLM--ADYDFTVLPVVDEEGRLVGIVT 247

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 38/150 (25%), Positives = 56/150 (37%), Gaps = 41/150 (27%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPT-ALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
             G  MT   E   V+   TV+E            E  I    V+D+  +L G++S    
Sbjct: 156 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAE-TIYYIYVVDEKGRLKGVLS---- 208

Query: 143 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 202
                                        ++ L+       V ++M P  V VR  T+ E
Sbjct: 209 -----------------------------LRDLIVADPRTRVAEIMNPKVVYVRTDTDQE 239

Query: 203 DAARLLLETKYRRL--PVVDADGKLVGIIT 230
           + ARL+    Y     PVVD +G+LVGI+T
Sbjct: 240 EVARLM--ADYDFTVLPVVDEEGRLVGIVT 267

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 57.5 bits (140), Expect = 9e-11
 Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 37/156 (23%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKR--ITGFPVIDDDWKLVGLVSDYD 141
            V D M T +E+  V    T+ +     AL  +  K   +T   + DDD  ++G+ +D D
Sbjct: 29  RVNDIMHTGDEIPHVGLQATLRD-----ALLEITRKNLGMTA--ICDDDMNIIGIFTDGD 81

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNL 201
           L          R             + F+    +   +    + D+MT   + +R  T  
Sbjct: 82  L----------R-------------RVFDTGVDMRDAS----IADVMTRGGIRIRPGTLA 114

Query: 202 EDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
            DA  L+       + V D    L+G++   +++RA
Sbjct: 115 VDALNLMQSRHITCVLVAD-GDHLLGVVHMHDLLRA 149

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 53/157 (33%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFP-------VIDDDWKLVG 135
            T G  MTT  E   +    TV  A     + +L  K             V+D +  LVG
Sbjct: 137 ETAGAIMTT--EFVSIVANQTVRSA-----MYVL--KNQADMAETIYYVYVVDQENHLVG 187

Query: 136 LVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVV 195
           ++S                                 ++ L+   +  ++ D++    + V
Sbjct: 188 VIS---------------------------------LRDLIVNDDDTLIADILNERVISV 214

Query: 196 RETTNLEDAARLLLETKYRRL--PVVDADGKLVGIIT 230
               + ED A+ +    Y  L  PV D D  L+GI+T
Sbjct: 215 HVGDDQEDVAQTI--RDYDFLAVPVTDYDDHLLGIVT 249

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 58.0 bits (139), Expect = 3e-10
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
            V V     +ED    + ET+Y   PV+D + K+VG I R +++  
Sbjct: 196 LVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIST 241

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 56.9 bits (136), Expect = 7e-10
 Identities = 12/64 (18%), Positives = 29/64 (45%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
           V DL       +    +L+ A  ++ +   + +PV D +  L+G+++  N+    + I  
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWD 68

Query: 244 ATEM 247
           +  +
Sbjct: 69  SNIL 72

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 51.1 bits (121), Expect = 6e-08
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 87  DFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           D++ TK+ L  V     V++         + E R + +PVID++ K+VG ++ + L+
Sbjct: 188 DYVMTKDNLVAVSTDDLVEDV-----KVTMSETRYSNYPVIDENNKVVGSIARFHLI 239

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 18/147 (12%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLV--SDYD 141
            V D      ++  + P  ++  A       I+ +K +   PV D +  L+G++  S+  
Sbjct: 8   KVEDLEMD--KIAPLAPEVSLKMA-----WNIMRDKNLKSIPVADGNNHLLGMLSTSNIT 60

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEV--QKLLSKTNGKMVGDLMTPAPVVVRE-- 197
              +D    +  A ++   +      +       +      GK+V   M    +      
Sbjct: 61  ATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISE 120

Query: 198 -----TTNLEDAARLLLETKYRRLPVV 219
                  +  +    L+E K   L V 
Sbjct: 121 GDIAIAGDRAEIQAELIELKVSLLIVT 147

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 39/145 (26%)

Query: 92  KEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISG 150
                ++K   TV EA       ++ + R+   PV+D DD  ++G+V    L  +  I  
Sbjct: 392 PAPPVILKSDATVGEAI-----ALMKKHRVDQLPVVDQDDGSVLGVVGQETL--ITQIV- 443

Query: 151 SGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLE 210
           S     S                              +    + + E+  L   AR+L  
Sbjct: 444 SMNRQQS------------------------DPAIKALNKRVIRLNESEILGKLARVLEV 479

Query: 211 TKYRRLPVVDADG----KLVGIITR 231
                + ++  +     +L  + T+
Sbjct: 480 DPS--VLILGKNPAGKVELKALATK 502

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 188 MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           +  +P  + E T+L+    L       R  V    GKLVG++    +  A
Sbjct: 195 IDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-GKLVGVVALAEIQAA 243

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
           VGD+M      +  T+   D   +L +TK +  P VD           G++ R  ++
Sbjct: 15  VGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTN---TLLGSIDRTEVE 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.91
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.89
4esy_A	170	CBS domain containing membrane protein; structural	99.89
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.88
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.88
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.88
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.88
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.87
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.87
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.87
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.87
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.87
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.87
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.86
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.86
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.86
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.86
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.85
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.85
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.85
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.85
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.85
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.84
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.84
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.84
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.84
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.84
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.84
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.83
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.83
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.83
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.83
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.83
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.82
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.82
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.82
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.81
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.81
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.81
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.81
3ddj_A	296	CBS domain-containing protein; structural genomics	99.8
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.79
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.79
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.78
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.78
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.78
3ddj_A	296	CBS domain-containing protein; structural genomics	99.77
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.76
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.76
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.74
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.73
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.73
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.72
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.72
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.71
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.71
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.66
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.65
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.64
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.63
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.63
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.63
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.62
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.61
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.58
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.57
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.51
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.42
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.27
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.22
4esy_A	170	CBS domain containing membrane protein; structural	99.03
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.99
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.84
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.83
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.82
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.81
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.8
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.79
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.79
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.79
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.78
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.77
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.76
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.76
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.74
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.73
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.73
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.72
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.72
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.71
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.7
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.7
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.69
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.69
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.68
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.66
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.65
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.65
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.65
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.64
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.64
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.63
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.63
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.63
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.63
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.62
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.61
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.59
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.59
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.58
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.58
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.57
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.55
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.53
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.51
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.48
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.44
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.41
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.37
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.16
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.09
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.04
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.04
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.0
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.9
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.87
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.77
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.57

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.91  E-value=2.7e-24  Score=172.96  Aligned_cols=159  Identities=77%  Similarity=1.218  Sum_probs=129.5

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCC
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  161 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~  161 (250)
                      .++++++|++..+++++.+++++.+|     ++.|.+++++++||+|++|+++|+|+..||+++....+........++.
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a-----~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~   77 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDA-----LELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPD   77 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC----------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHH-----HHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCccccccc
Confidence            46899999876568999999999999     9999999999999999999999999999999765544444445556667


Q ss_pred             cccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                      ..+.|..|.+...........++.++|.++++++++++++.+|+++|.+++++++||+|++|+++|+||++||++++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~  157 (180)
T 3sl7_A           78 VDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQI  157 (180)
T ss_dssp             ---CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ccchhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence            78889999888887777778899999999999999999999999999999999999999899999999999999999887


Q ss_pred             hhhh
Q 025613          242 KHAT  245 (250)
Q Consensus       242 ~~~~  245 (250)
                      .+..
T Consensus       158 ~~~~  161 (180)
T 3sl7_A          158 KRNA  161 (180)
T ss_dssp             HHTC
T ss_pred             hhhh
Confidence            7654

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.89  E-value=5.7e-23  Score=160.39  Aligned_cols=148  Identities=86%  Similarity=1.272  Sum_probs=118.2

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      +.++++++|++..+++++++++++.++     ++.|.+++++++||+|++|+++|+|+..||++++..            
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~------------   65 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEA-----LELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSG------------   65 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHH-----HHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC--------------
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHH-----HHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcc------------
Confidence            457899999886568999999999999     999999999999999998999999999999865321            


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                        ...|..+.+...........++.++|.++++++++++++.+|++.|.+++.+.+||+|++|+++|+||.+||++++.+
T Consensus        66 --~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           66 --DSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             ----CCHHHHHHHTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             --cCcccchHHHHHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence              123444444444333455678999999999999999999999999999999999999988999999999999999998


Q ss_pred             hhhhhhc
Q 025613          241 IKHATEM  247 (250)
Q Consensus       241 ~~~~~~~  247 (250)
                      ......+
T Consensus       144 ~~~~~~~  150 (152)
T 4gqw_A          144 IKRSGDR  150 (152)
T ss_dssp             -------
T ss_pred             ccccccC
Confidence            7766544

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.89  E-value=1.3e-23  Score=168.48  Aligned_cols=149  Identities=24%  Similarity=0.308  Sum_probs=117.2

Q ss_pred             CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCC
Q 025613           80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  159 (250)
Q Consensus        80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~  159 (250)
                      +..++|+|+|++  +++++.+++++.+|     ++.|.+++++++||+|++|+++|+||.+||++.........     .
T Consensus        15 l~~~~V~diM~~--~v~~v~~~~tl~~a-----~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~-----~   82 (170)
T 4esy_A           15 IRQVPIRDILTS--PVVTVREDDTLDAV-----AKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYE-----A   82 (170)
T ss_dssp             HHTSBGGGGCCS--CCCCEETTSBHHHH-----HHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHH-----H
T ss_pred             HcCCCHHHhcCC--CCcEECCcCcHHHH-----HHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccc-----h
Confidence            356789999998  89999999999999     99999999999999999999999999999987532111000     0


Q ss_pred             CCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      .......................++.++|+++++++++++++.+|+++|.+++++++||+| +|+++|+||+.||++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~  161 (170)
T 4esy_A           83 SEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLL  161 (170)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSC
T ss_pred             hhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            0000000011112223334567889999999999999999999999999999999999999 699999999999999875


Q ss_pred             hh
Q 025613          240 QI  241 (250)
Q Consensus       240 ~~  241 (250)
                      ..
T Consensus       162 ~~  163 (170)
T 4esy_A          162 LE  163 (170)
T ss_dssp             CC
T ss_pred             hc
Confidence            43

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.88  E-value=7.2e-23  Score=162.55  Aligned_cols=132  Identities=25%  Similarity=0.342  Sum_probs=113.2

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcc
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  163 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~  163 (250)
                      +++++|+|+.++.++.+++|+.+|     ++.|.+++++++||+|++|+++|+||.+|+++++...+.            
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a-----~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~------------   78 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHA-----TLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL------------   78 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHH-----HHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC------------
T ss_pred             cHHHhCcchhHeEEECCcCCHHHH-----HHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhccc------------
Confidence            688999998899999999999999     999999999999999988999999999999876432210            


Q ss_pred             cchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhh
Q 025613          164 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH  243 (250)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~  243 (250)
                                 ........++.++|.++++++++++++.+|++.|.+++  .+||||++|+++|+||++||++++....+
T Consensus        79 -----------~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~~  145 (156)
T 3k6e_A           79 -----------SQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLH  145 (156)
T ss_dssp             -----------CHHHHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHSC
T ss_pred             -----------ccccccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHhc
Confidence                       00123467899999999999999999999999998765  49999999999999999999999988765


Q ss_pred             hh
Q 025613          244 AT  245 (250)
Q Consensus       244 ~~  245 (250)
                      ..
T Consensus       146 ~~  147 (156)
T 3k6e_A          146 DF  147 (156)
T ss_dssp             C-
T ss_pred             cc
Confidence            54

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.88  E-value=5.5e-22  Score=155.13  Aligned_cols=128  Identities=17%  Similarity=0.276  Sum_probs=114.7

Q ss_pred             CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCC
Q 025613           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADN  156 (250)
Q Consensus        78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~  156 (250)
                      ..+...+++++|+++.+++++++++++.++     ++.|.+++++++||+|++ |+++|+|+.+||++++.         
T Consensus        18 ~~l~~~~v~diM~~~~~~~~v~~~~~~~~a-----~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~---------   83 (148)
T 3lv9_A           18 FEFEEKKIREIMVPRTDMVCIYESDSEEKI-----LAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI---------   83 (148)
T ss_dssp             CGGGTCBGGGTSEETTTCCCEETTCCHHHH-----HHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHH---------
T ss_pred             hccCCCCHHHccccHHHeEEECCCCCHHHH-----HHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh---------
Confidence            355678999999986679999999999999     999999999999999987 89999999999997532         


Q ss_pred             CCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                                           .....++.++| ++++++++++++.+|++.|.+++.+.+||+|++|+++|+||+.||++
T Consensus        84 ---------------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~  141 (148)
T 3lv9_A           84 ---------------------NENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILE  141 (148)
T ss_dssp             ---------------------HHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHH
T ss_pred             ---------------------cCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHH
Confidence                                 11267899999 88999999999999999999999999999998899999999999999


Q ss_pred             HHHhh
Q 025613          237 AALQI  241 (250)
Q Consensus       237 ~l~~~  241 (250)
                      ++...
T Consensus       142 ~l~~~  146 (148)
T 3lv9_A          142 EIVGE  146 (148)
T ss_dssp             HHHHT
T ss_pred             HHhCc
Confidence            98753

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.88  E-value=5.6e-22  Score=151.81  Aligned_cols=124  Identities=22%  Similarity=0.361  Sum_probs=109.4

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMF  159 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~  159 (250)
                      ...+++++|++..+++++++++++.++     ++.|.+++++++||+|++ |+++|+|+.+||+++..            
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a-----~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~------------   65 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQL-----LATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML------------   65 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHH-----HHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT------------
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHH-----HHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc------------
Confidence            356899999965588999999999999     999999999999999985 89999999999997532            


Q ss_pred             CCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                                         ....++.++|.+ ++++++++++.+|++.|.+++.+.+||+|++|+++|+||++||++++.
T Consensus        66 -------------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           66 -------------------EPALDIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             -------------------CTTSCGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred             -------------------cCCcCHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                               135678999965 889999999999999999999999999998899999999999999987


Q ss_pred             hh
Q 025613          240 QI  241 (250)
Q Consensus       240 ~~  241 (250)
                      ..
T Consensus       126 ge  127 (129)
T 3jtf_A          126 GD  127 (129)
T ss_dssp             HT
T ss_pred             CC
Confidence            53

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.88  E-value=2.4e-22  Score=153.89  Aligned_cols=126  Identities=20%  Similarity=0.292  Sum_probs=109.0

Q ss_pred             CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      +...+++++|++..+++++++++++.+|     ++.|.+++++++||+|++ |+++|+|+.+||+++...          
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a-----~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~----------   67 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEF-----LDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS----------   67 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHH-----HHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT----------
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHH-----HHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc----------
Confidence            4567899999975577899999999999     999999999999999987 899999999999976321          


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                         .....++.++|. +++++++++++.+|++.|.+++.+.+||+|++|+++|+||+.||++++
T Consensus        68 -------------------~~~~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l  127 (130)
T 3i8n_A           68 -------------------GSGQKQLGAVMR-PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHL  127 (130)
T ss_dssp             -------------------TTTTSBHHHHSE-ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             -------------------CCCcCCHHHHhc-CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHH
Confidence                               123568999995 588999999999999999999999999999889999999999999987


Q ss_pred             Hh
Q 025613          239 LQ  240 (250)
Q Consensus       239 ~~  240 (250)
                      ..
T Consensus       128 ~g  129 (130)
T 3i8n_A          128 VG  129 (130)
T ss_dssp             HT
T ss_pred             cC
Confidence            53

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.87  E-value=7.3e-22  Score=158.75  Aligned_cols=129  Identities=19%  Similarity=0.211  Sum_probs=111.7

Q ss_pred             CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCC
Q 025613           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADN  156 (250)
Q Consensus        78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~  156 (250)
                      ..+...+++++|++..+++++++++++.++     ++.|.+++++++||+|++ |+++|+|+.+||+++..         
T Consensus        37 ~~l~~~~v~diM~~~~~~~~v~~~~~v~~a-----~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~---------  102 (172)
T 3lhh_A           37 FRLDERTISSLMVPRSDIVFLDLNLPLDAN-----LRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI---------  102 (172)
T ss_dssp             ------CTTTTSEEGGGCCCEETTSCHHHH-----HHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH---------
T ss_pred             hccCCCCHHHhCccHHHeEEEcCCCCHHHH-----HHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh---------
Confidence            456778999999954489999999999999     999999999999999987 99999999999997632         


Q ss_pred             CCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                                           .....++.++| ++++++++++++.+|++.|.+++++.+||+|++|+++|+||+.||++
T Consensus       103 ---------------------~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~  160 (172)
T 3lhh_A          103 ---------------------AGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMD  160 (172)
T ss_dssp             ---------------------TTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             ---------------------hcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHH
Confidence                                 11257899999 88999999999999999999999999999998899999999999999


Q ss_pred             HHHhhh
Q 025613          237 AALQIK  242 (250)
Q Consensus       237 ~l~~~~  242 (250)
                      ++....
T Consensus       161 ~l~~~~  166 (172)
T 3lhh_A          161 ALTGEF  166 (172)
T ss_dssp             HHHTTC
T ss_pred             HHhCCC
Confidence            987644

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.87  E-value=2.9e-22  Score=153.78  Aligned_cols=125  Identities=14%  Similarity=0.126  Sum_probs=108.5

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC-CCcEEEEEehHHHHhhhhccCCCCCCCCCCCC
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPE  161 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~-~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~  161 (250)
                      ++++++|++..+++++++++++.+|     ++.|.+++++++||+++ +|+++|+|+.+||+++.....           
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a-----~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~-----------   65 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSI-----VRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-----------   65 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHH-----HHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSS-----------
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHH-----HHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccC-----------
Confidence            5789999865579999999999999     99999999999999975 589999999999998643111           


Q ss_pred             cccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                      .....++.++| ++++++++++++.+|++.|.+++.+.+||+|++|+++|+||++||++++..
T Consensus        66 ----------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           66 ----------------EFTKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             ----------------CCCHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred             ----------------ccchhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence                            01124688889 668999999999999999999999999999989999999999999999865

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.87  E-value=3.8e-22  Score=152.19  Aligned_cols=123  Identities=23%  Similarity=0.408  Sum_probs=108.2

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      .++++++|++..+++++++++++.++     ++.|.+++++++||+|++ |+++|+|+.+||++++..            
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a-----~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~------------   64 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDEC-----LDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS------------   64 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHH-----HHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST------------
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHH-----HHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc------------
Confidence            45899999973359999999999999     999999999999999987 899999999999976321            


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                                       .....++.++|.+ ++++++++++.+|++.|.+++.+.+||+|++|+++|+||+.||++++.
T Consensus        65 -----------------~~~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           65 -----------------DAEAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             -----------------TCCCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC-
T ss_pred             -----------------cCCCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                             1235689999966 889999999999999999999999999998999999999999999864

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.87  E-value=3.5e-22  Score=154.43  Aligned_cols=127  Identities=23%  Similarity=0.318  Sum_probs=109.2

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      .++++++|+++.++.++++++++.+|     ++.|.+++++++||++++ |+++|+|+.+||++++...           
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a-----~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~-----------   65 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREF-----LPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKA-----------   65 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHH-----HHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSS-----------
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHH-----HHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhc-----------
Confidence            45899999965578999999999999     999999999999999987 8999999999999764211           


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                       .....++.++|.+ ++++++++++.+|++.|.+++++.+||+|++|+++|+||++||++++..
T Consensus        66 -----------------~~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           66 -----------------DGDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             -----------------SGGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC--
T ss_pred             -----------------cCCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence                             1235689999976 8999999999999999999999999999989999999999999998775


Q ss_pred             hh
Q 025613          241 IK  242 (250)
Q Consensus       241 ~~  242 (250)
                      ..
T Consensus       128 ~~  129 (136)
T 3lfr_A          128 DI  129 (136)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.87  E-value=1.4e-21  Score=154.75  Aligned_cols=136  Identities=23%  Similarity=0.295  Sum_probs=118.3

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      .+..++++++|++  . +++.+++++.+|     ++.|.+++++++||+|++|+++|+|+.+||+++.....        
T Consensus        13 ~l~~~~v~~im~~--~-~~v~~~~~~~~a-----~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------   76 (159)
T 3fv6_A           13 KLKKLQVKDFQSI--P-VVIHENVSVYDA-----ICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ--------   76 (159)
T ss_dssp             HHTTCBGGGSCBC--C-CEEETTSBHHHH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCS--------
T ss_pred             HHhhCCHHHHcCC--C-EEECCCCcHHHH-----HHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccC--------
Confidence            4466799999987  4 599999999999     99999999999999998899999999999997642111        


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCC---cEEEEEehHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADG---KLVGIITRGN  233 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g---~~vGiIt~~D  233 (250)
                                         .....++.++|.+  +++++.+++++.+|++.|.+++++.+||+|++|   +++|+||+.|
T Consensus        77 -------------------~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~d  137 (159)
T 3fv6_A           77 -------------------ELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTN  137 (159)
T ss_dssp             -------------------CTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHH
T ss_pred             -------------------cccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHH
Confidence                               2245789999998  899999999999999999999999999999877   9999999999


Q ss_pred             HHHHHHhhhhhhhcCC
Q 025613          234 VVRAALQIKHATEMGA  249 (250)
Q Consensus       234 il~~l~~~~~~~~~~~  249 (250)
                      |++++.++......+.
T Consensus       138 il~~l~~~~~~~~~~~  153 (159)
T 3fv6_A          138 MTKILVSLSENEILLQ  153 (159)
T ss_dssp             HHHHHHHHHTTCCC--
T ss_pred             HHHHHHHHhhcchhhh
Confidence            9999999988766554

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.87  E-value=1.3e-21  Score=147.57  Aligned_cols=119  Identities=24%  Similarity=0.412  Sum_probs=108.9

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcc
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  163 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~  163 (250)
                      +++++|++  +++++++++++.++     ++.|.+++++.+||+|++|+++|+|+..||++++.                
T Consensus         2 ~v~~im~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~----------------   58 (122)
T 3kpb_A            2 LVKDILSK--PPITAHSNISIMEA-----AKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA----------------   58 (122)
T ss_dssp             BHHHHCCS--CCCCEETTSBHHHH-----HHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHH----------------
T ss_pred             chHHhhCC--CCEEeCCCCcHHHH-----HHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHH----------------
Confidence            68899998  89999999999999     99999999999999999999999999999997632                


Q ss_pred             cchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          164 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                     ....++.++|.++++++++++++.+|++.|.+.+.+++||+|++|+++|+||.+||++++.+
T Consensus        59 ---------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           59 ---------------QNKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             ---------------TTCCBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             ---------------hcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence                           12348999999999999999999999999999999999999988999999999999998764

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.86  E-value=3.3e-21  Score=147.64  Aligned_cols=129  Identities=26%  Similarity=0.403  Sum_probs=113.4

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      ...+++++|.+  +++++++++++.++     ++.|.+++++++||+| +|+++|+|+..|+.+++...           
T Consensus         2 ~~~~v~~im~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~-----------   62 (133)
T 2ef7_A            2 EEEIVKEYMKT--QVISVTKDAKLNDI-----AKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKG-----------   62 (133)
T ss_dssp             CCCBGGGTSBC--SCCEEETTCBHHHH-----HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT-----------
T ss_pred             CcccHHHhccC--CCEEECCCCcHHHH-----HHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcC-----------
Confidence            45689999998  89999999999999     9999999999999999 89999999999998753211           


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                       .....++.++|.++++++++++++.+|++.|.+.+.+.+||+|++|+++|+||+.||++++.+
T Consensus        63 -----------------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           63 -----------------KSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             -----------------CCTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             -----------------CCcccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence                             123578999999889999999999999999999999999999988999999999999999988


Q ss_pred             hhhhh
Q 025613          241 IKHAT  245 (250)
Q Consensus       241 ~~~~~  245 (250)
                      ..++.
T Consensus       126 ~~~~l  130 (133)
T 2ef7_A          126 MFETM  130 (133)
T ss_dssp             HC---
T ss_pred             HHHHh
Confidence            76654

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.86  E-value=1.3e-21  Score=149.27  Aligned_cols=125  Identities=19%  Similarity=0.206  Sum_probs=112.0

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      ..++++++|.+  +++++++++++.++     ++.|.+++++++||+|+ |+++|+|+.+||.++....           
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~-----------   63 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTADA-----ARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGW-----------   63 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHHHH-----HHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSS-----------
T ss_pred             cceEHHHhhcC--CcceECCCCCHHHH-----HHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhC-----------
Confidence            45789999999  89999999999999     99999999999999998 9999999999999753211           


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                       .....++.++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||+.|+++++.+
T Consensus        64 -----------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           64 -----------------PTVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             -----------------CCTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             -----------------CcccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence                             112367999999999999999999999999999999999999989999999999999999876


Q ss_pred             h
Q 025613          241 I  241 (250)
Q Consensus       241 ~  241 (250)
                      .
T Consensus       127 ~  127 (128)
T 3gby_A          127 R  127 (128)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.86  E-value=1.4e-21  Score=152.83  Aligned_cols=138  Identities=21%  Similarity=0.271  Sum_probs=115.3

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      .+..++++++|++..+++++.+++++.+|     ++.|.+++++++||+|++|+++|+|+.+||++++......      
T Consensus        11 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a-----~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~------   79 (150)
T 3lqn_A           11 EFQQIFVKDLMISSEKVAHVQIGNGLEHA-----LLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERI------   79 (150)
T ss_dssp             HHHHCBHHHHSEEGGGSCCBCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSB------
T ss_pred             hhhcCChhhcccCCCceEEECCCCcHHHH-----HHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhccc------
Confidence            34567999999964369999999999999     9999999999999999999999999999999864311100      


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                       .               .......++.++|.++++++++++++.+|++.|.++++  +||+|++|+++|+||+.||++++
T Consensus        80 -~---------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l  141 (150)
T 3lqn_A           80 -E---------------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLL  141 (150)
T ss_dssp             -C---------------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHH
T ss_pred             -c---------------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHH
Confidence             0               01224578999999999999999999999999999887  99999899999999999999999


Q ss_pred             Hhhhhhh
Q 025613          239 LQIKHAT  245 (250)
Q Consensus       239 ~~~~~~~  245 (250)
                      .+..++.
T Consensus       142 ~~~~~~~  148 (150)
T 3lqn_A          142 NKKVRQH  148 (150)
T ss_dssp             HHHC---
T ss_pred             HHHhHhh
Confidence            8877654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.86  E-value=7.1e-21  Score=146.64  Aligned_cols=129  Identities=26%  Similarity=0.401  Sum_probs=113.7

Q ss_pred             CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh-hhhccCCCCCCCCC
Q 025613           80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSM  158 (250)
Q Consensus        80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~-~~~~~~~~~~~~~~  158 (250)
                      +...+++++|++  +++++++++++.++     ++.|.+++++++||+|++|+++|+|+..||++ ++. .+        
T Consensus         4 l~~~~v~~im~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~-~~--------   67 (138)
T 2yzi_A            4 DMKAPIKVYMTK--KLLGVKPSTSVQEA-----SRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV-PG--------   67 (138)
T ss_dssp             CTTSBGGGTCBC--CCCEECTTSBHHHH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT-TC--------
T ss_pred             hhhhhHHHHhcC--CCeEECCCCcHHHH-----HHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh-cC--------
Confidence            456789999998  89999999999999     99999999999999998899999999999974 321 11        


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                         .....++.++|.++++++++++++.+|++.|.+++.+++ |+|++|+++|+||..||++++
T Consensus        68 -------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~  127 (138)
T 2yzi_A           68 -------------------LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEAS  127 (138)
T ss_dssp             -------------------CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHH
T ss_pred             -------------------CcccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHH
Confidence                               123578999999999999999999999999999999999 999889999999999999998


Q ss_pred             Hhhhhh
Q 025613          239 LQIKHA  244 (250)
Q Consensus       239 ~~~~~~  244 (250)
                      .+..++
T Consensus       128 ~~~~~~  133 (138)
T 2yzi_A          128 RRRLET  133 (138)
T ss_dssp             HCCSCC
T ss_pred             HHHHHh
Confidence            876544

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.85  E-value=1.4e-21  Score=153.91  Aligned_cols=127  Identities=23%  Similarity=0.337  Sum_probs=111.3

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEE-eC-CCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vv-d~-~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      ...+++++|+++.+++++++++++.+|     ++.|.+++++++||+ ++ +|+++|+|+.+||++++.           
T Consensus        18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a-----~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~-----------   81 (153)
T 3oco_A           18 NDKVASDVMVDRTSMSVVDVDETIADA-----LLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR-----------   81 (153)
T ss_dssp             HHCBHHHHSEEGGGCCCEETTSBHHHH-----HHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH-----------
T ss_pred             CCCEeeeEecchhheEEEcCCCCHHHH-----HHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh-----------
Confidence            456899999865578999999999999     999999999999999 65 489999999999997532           


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                         .....++.++| ++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||+.||++++
T Consensus        82 -------------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l  141 (153)
T 3oco_A           82 -------------------IDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEEL  141 (153)
T ss_dssp             -------------------HHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHH
T ss_pred             -------------------cCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHH
Confidence                               11267899999 8899999999999999999999999999999889999999999999998


Q ss_pred             Hhhhh
Q 025613          239 LQIKH  243 (250)
Q Consensus       239 ~~~~~  243 (250)
                      .....
T Consensus       142 ~~~~~  146 (153)
T 3oco_A          142 FGNLR  146 (153)
T ss_dssp             HC---
T ss_pred             hccCC
Confidence            86543

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=3.7e-21  Score=153.27  Aligned_cols=136  Identities=24%  Similarity=0.358  Sum_probs=117.5

Q ss_pred             CCCCCCceeccccccC-CceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCC
Q 025613           77 APSSGVYTVGDFMTTK-EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD  155 (250)
Q Consensus        77 ~~~~~~~~v~~~m~~~-~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~  155 (250)
                      ...+..++++++|+++ .+++++.+++++.+|     ++.|.++++..+||+|++|+++|+|+..||++++...+     
T Consensus        18 ~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a-----~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-----   87 (165)
T 3fhm_A           18 YFQGMATFVKDLLDRKGRDVVTVGPDVSIGEA-----AGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQG-----   87 (165)
T ss_dssp             CCSSSSCBHHHHHHHHCSCCCEECTTSBHHHH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHG-----
T ss_pred             hHhhhhcCHHHHhccCCCCCeEECCCCCHHHH-----HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcC-----
Confidence            5677888999999962 368999999999999     99999999999999999999999999999997643211     


Q ss_pred             CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613          156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  235 (250)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil  235 (250)
                                           ......++.++|.++++++.+++++.+|++.|.+++.+++||+|+ |+++|+||+.||+
T Consensus        88 ---------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil  145 (165)
T 3fhm_A           88 ---------------------AASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVV  145 (165)
T ss_dssp             ---------------------GGGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHH
T ss_pred             ---------------------CccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHH
Confidence                                 123467899999999999999999999999999999999999997 9999999999999


Q ss_pred             HHHHhhhhh
Q 025613          236 RAALQIKHA  244 (250)
Q Consensus       236 ~~l~~~~~~  244 (250)
                      +++.+....
T Consensus       146 ~~~~~~~~~  154 (165)
T 3fhm_A          146 KARIGEIEA  154 (165)
T ss_dssp             HHTTCC---
T ss_pred             HHHHHHHHH
Confidence            998776544

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.85  E-value=6.6e-21  Score=153.71  Aligned_cols=127  Identities=18%  Similarity=0.176  Sum_probs=110.9

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNS  157 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~  157 (250)
                      .+...+++++|+++.+++++++++++.++     ++.|.+++++++||++++ |+++|+|+.+||+.++.          
T Consensus        32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea-----~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~----------   96 (173)
T 3ocm_A           32 TLAERSIRSIMTPRTDVSWVNIDDDAATI-----RQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI----------   96 (173)
T ss_dssp             HHTTSCSTTTSEEGGGCCCEETTSCHHHH-----HHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH----------
T ss_pred             ccCCCCHHHhCCcHHHeEEEeCCCCHHHH-----HHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh----------
Confidence            34667999999865579999999999999     999999999999999986 89999999999997532          


Q ss_pred             CCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                                          .....++. +| ++++++++++++.+|++.|.+++.+.+||+|++|+++|+||+.||+++
T Consensus        97 --------------------~~~~~~v~-~~-~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~  154 (173)
T 3ocm_A           97 --------------------TEGRVRRN-RL-RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEA  154 (173)
T ss_dssp             --------------------HHSSCCGG-GS-BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHH
T ss_pred             --------------------cCCcchhH-hc-CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHH
Confidence                                11245677 44 678999999999999999999999999999989999999999999999


Q ss_pred             HHhhh
Q 025613          238 ALQIK  242 (250)
Q Consensus       238 l~~~~  242 (250)
                      +....
T Consensus       155 l~~~i  159 (173)
T 3ocm_A          155 IAGEF  159 (173)
T ss_dssp             HHCCC
T ss_pred             HhCcC
Confidence            88644

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.85  E-value=9.1e-21  Score=150.37  Aligned_cols=137  Identities=28%  Similarity=0.335  Sum_probs=114.2

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCC
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  161 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~  161 (250)
                      .++++++|++  +++++.+++++.+|     ++.|.+++++++||+|++|+++|+|+..||++++......         
T Consensus         4 ~~~v~dim~~--~~~~v~~~~tl~~a-----~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~---------   67 (160)
T 2o16_A            4 MIKVEDMMTR--HPHTLLRTHTLNDA-----KHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQR---------   67 (160)
T ss_dssp             CCBGGGTSEE--SCCCBCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC----------
T ss_pred             cCcHHHHhcC--CCeEECCCCcHHHH-----HHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcc---------
Confidence            4689999998  89999999999999     9999999999999999889999999999999764321000         


Q ss_pred             cccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                             +.   .........++.++|.++++++++++++.+|++.|.+.+.+.+||+|+ |+++|+||+.||++++.+.
T Consensus        68 -------~~---~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~  136 (160)
T 2o16_A           68 -------SA---QGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINL  136 (160)
T ss_dssp             ------------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHH
T ss_pred             -------cc---cccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHH
Confidence                   00   000123467899999999999999999999999999999999999996 9999999999999998876


Q ss_pred             hhhh
Q 025613          242 KHAT  245 (250)
Q Consensus       242 ~~~~  245 (250)
                      ....
T Consensus       137 ~~~~  140 (160)
T 2o16_A          137 LELQ  140 (160)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            6544

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.85  E-value=1.7e-20  Score=145.35  Aligned_cols=125  Identities=17%  Similarity=0.187  Sum_probs=111.6

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCC--cEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g--~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      ++++++|++  ++.++.+++++.++     ++.|.+++++.+||+|++|  +++|+|+.+||++++...           
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~-----------   66 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIREV-----ATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR-----------   66 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHH-----HHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT-----------
T ss_pred             eEHHHHhcC--CCeEeCCCCcHHHH-----HHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC-----------
Confidence            579999998  89999999999999     9999999999999999888  999999999999763211           


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                       .....++.++|.+++++++++ ++.+|++.|.+.+.+.+||+|++|+++|+||+.||++++..
T Consensus        67 -----------------~~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           67 -----------------LDLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             -----------------CCTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             -----------------CCCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence                             123578999999999999999 99999999999999999999988999999999999988776


Q ss_pred             hhh
Q 025613          241 IKH  243 (250)
Q Consensus       241 ~~~  243 (250)
                      ...
T Consensus       129 ~~~  131 (141)
T 2rih_A          129 LLE  131 (141)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.84  E-value=1.5e-20  Score=144.64  Aligned_cols=127  Identities=31%  Similarity=0.484  Sum_probs=111.7

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHH-HhhhhccCCCCCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDSISGSGRADNS  157 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL-~~~~~~~~~~~~~~~  157 (250)
                      .+...+++++|++  ++.++.+++++.++     ++.|.+++++++||+|++|+++|+|+.+|+ .+++...        
T Consensus         4 ~l~~~~v~~im~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------   68 (138)
T 2p9m_A            4 TLKNIKVKDVMTK--NVITAKRHEGVVEA-----FEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDK--------   68 (138)
T ss_dssp             -CTTCBGGGTSBC--SCCCEETTSBHHHH-----HHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTC--------
T ss_pred             ccccCCHHHhhcC--CceEECCCCcHHHH-----HHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhc--------
Confidence            4556799999988  89999999999999     999999999999999988999999999999 7653210        


Q ss_pred             CCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcC-----CCEEEEEcCCCcEEEEEehH
Q 025613          158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK-----YRRLPVVDADGKLVGIITRG  232 (250)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVVd~~g~~vGiIt~~  232 (250)
                                          .....++.++|.++++++++++++.++++.|.+.+     .+.+||+|++|+++|+||..
T Consensus        69 --------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~  128 (138)
T 2p9m_A           69 --------------------YTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDG  128 (138)
T ss_dssp             --------------------CCSSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHH
T ss_pred             --------------------ccCCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHH
Confidence                                12356899999999999999999999999999999     99999999889999999999


Q ss_pred             HHHHHHHh
Q 025613          233 NVVRAALQ  240 (250)
Q Consensus       233 Dil~~l~~  240 (250)
                      |+++++.+
T Consensus       129 dll~~~~~  136 (138)
T 2p9m_A          129 DIIRTISK  136 (138)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998765

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.84  E-value=2.4e-20  Score=154.47  Aligned_cols=124  Identities=21%  Similarity=0.300  Sum_probs=112.6

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHc---CCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEK---RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS  157 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~---~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~  157 (250)
                      ...+++++|++  +++++++++|+.++     ++.|.+.   ++..+||+|++|+++|+|+.+||+..            
T Consensus        52 ~~~~v~~iM~~--~~~~v~~~~tv~ea-----l~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~------------  112 (205)
T 3kxr_A           52 SENEIGRYTDH--QMLVLSDKATVAQA-----QRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH------------  112 (205)
T ss_dssp             CTTCGGGGCBC--CCCEEETTCBHHHH-----HHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS------------
T ss_pred             CcchHHhhccC--ceEEECCCCcHHHH-----HHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC------------
Confidence            45589999999  89999999999999     9999987   78899999999999999999999852            


Q ss_pred             CCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                                           ....++.++|+++++++++++++.+|++.|.+++++.+||||++|+++|+||..||++.
T Consensus       113 ---------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~  171 (205)
T 3kxr_A          113 ---------------------EPHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATAL  171 (205)
T ss_dssp             ---------------------CTTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             ---------------------CCcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence                                 23578999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhh
Q 025613          238 ALQIKHA  244 (250)
Q Consensus       238 l~~~~~~  244 (250)
                      +.+...+
T Consensus       172 i~~e~~e  178 (205)
T 3kxr_A          172 VREHYEA  178 (205)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHH
Confidence            9876543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.84  E-value=1.7e-20  Score=144.13  Aligned_cols=123  Identities=27%  Similarity=0.457  Sum_probs=108.5

Q ss_pred             eeccccc---cCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           84 TVGDFMT---TKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        84 ~v~~~m~---~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      +++++|+   +  +++++++++++.++     ++.|.+++++++||+| +|+++|+|+.+||++.....+.         
T Consensus         7 ~v~~im~~~~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~---------   69 (135)
T 2rc3_A            7 TVKHLLQEKGH--TVVAIGPDDSVFNA-----MQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK---------   69 (135)
T ss_dssp             BHHHHHHHHCC--CCCEECTTSBHHHH-----HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS---------
T ss_pred             eHHHHHhcCCC--CcEEECCCCcHHHH-----HHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCC---------
Confidence            8999998   6  89999999999999     9999999999999999 8999999999999863221110         


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                       .....++.++|.++++++++++++.+|++.|.+++.+++||+| +|+++|+||+.||++++.+
T Consensus        70 -----------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           70 -----------------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             -----------------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             -----------------CcccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence                             1235789999999999999999999999999999999999999 7999999999999998876


Q ss_pred             h
Q 025613          241 I  241 (250)
Q Consensus       241 ~  241 (250)
                      .
T Consensus       132 ~  132 (135)
T 2rc3_A          132 Q  132 (135)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.84  E-value=1.2e-20  Score=142.76  Aligned_cols=122  Identities=21%  Similarity=0.347  Sum_probs=107.7

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      ++++++|++  +++++++++++.++     ++.|.+++++.+||+| +|+++|+|+.+|++++.....            
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~------------   60 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLEDV-----LRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD------------   60 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHHHH-----HHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC------------
T ss_pred             CCHHHhcCC--CceEECCCCcHHHH-----HHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCC------------
Confidence            368899998  89999999999999     9999999999999999 899999999999987532110            


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                     .....++.++|.++++++++++++.++++.|.+.+.+.+||+|+ |+++|+||+.|+++++.+
T Consensus        61 ---------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           61 ---------------DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             ---------------CTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred             ---------------cccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence                           12357899999999999999999999999999999999999997 999999999999998754

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.84  E-value=5.4e-21  Score=151.15  Aligned_cols=121  Identities=21%  Similarity=0.355  Sum_probs=107.6

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNS  157 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~  157 (250)
                      .+...+++++|+++.+++++++++++.++     ++.|.+++++++||+|++ |+++|+|+.+||+++..          
T Consensus        34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a-----~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~----------   98 (156)
T 3oi8_A           34 DFSDLEVRDAMITRSRMNVLKENDSIERI-----TAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMF----------   98 (156)
T ss_dssp             HHTTCBGGGTCEEGGGCCCEETTCCHHHH-----HHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSS----------
T ss_pred             ccCCCCHhheeeeHHHeEEECCCCCHHHH-----HHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH----------
Confidence            34567999999976578999999999999     999999999999999987 49999999999997532          


Q ss_pred             CCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613          158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  235 (250)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil  235 (250)
                                          .....++.++|.+ ++++++++++.+|++.|.+++.+.+||+|++|+++|+||++||+
T Consensus        99 --------------------~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A           99 --------------------NPEQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             --------------------CGGGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             --------------------cCCcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence                                0135679999976 88999999999999999999999999999899999999999986

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.83  E-value=4e-20  Score=145.47  Aligned_cols=137  Identities=23%  Similarity=0.308  Sum_probs=113.9

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      .+..++++++|.+..+++++.+++++.++     ++.|.+++++++||+|++|+++|+|+..||++++.....       
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a-----~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~-------   74 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHA-----LLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLER-------   74 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHH-----HHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSS-------
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHH-----HHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccc-------
Confidence            45667999999854468899999999999     999999999999999988999999999999976432100       


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                             |..        ......++.++|.++++++++++++.+|++.|.++++  +||+|++|+++|+||+.||++++
T Consensus        75 -------~~~--------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~  137 (157)
T 2emq_A           75 -------IEF--------ERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQL  137 (157)
T ss_dssp             -------BCG--------GGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHH
T ss_pred             -------cch--------HHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHH
Confidence                   000        0123578999999999999999999999999999987  99999889999999999999998


Q ss_pred             Hhhhhh
Q 025613          239 LQIKHA  244 (250)
Q Consensus       239 ~~~~~~  244 (250)
                      ......
T Consensus       138 ~~~~~~  143 (157)
T 2emq_A          138 NKQLHR  143 (157)
T ss_dssp             HHTTCC
T ss_pred             HHHhhc
Confidence            876554

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.83  E-value=1.5e-20  Score=148.68  Aligned_cols=139  Identities=18%  Similarity=0.242  Sum_probs=114.4

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      .+..++++++|+++.+++++.+++++.++     ++.|.++++..+||+|++|+++|+|+..||+++....+.       
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a-----~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~-------   77 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLEHA-----LLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLER-------   77 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHHHH-----HHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSS-------
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHHHH-----HHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcc-------
Confidence            45567999999865568999999999999     999999999999999988999999999999976432110       


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                             +.        .......++.++|.++++++.+++++.+|++.|.+.++  +||+|++|+++|+||+.||++++
T Consensus        78 -------~~--------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~  140 (159)
T 1yav_A           78 -------IE--------FEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKEL  140 (159)
T ss_dssp             -------BC--------GGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHH
T ss_pred             -------cc--------hhhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHH
Confidence                   00        00134678999999999999999999999999998876  99999889999999999999998


Q ss_pred             Hhhhhhhh
Q 025613          239 LQIKHATE  246 (250)
Q Consensus       239 ~~~~~~~~  246 (250)
                      .+...+..
T Consensus       141 ~~~~~~~~  148 (159)
T 1yav_A          141 NKHIRSLN  148 (159)
T ss_dssp             HHHC----
T ss_pred             HHHHHhhc
Confidence            88765543

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.83  E-value=3e-20  Score=146.73  Aligned_cols=145  Identities=24%  Similarity=0.387  Sum_probs=115.5

Q ss_pred             CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCe-eEEEeCCCcEEEEEehHHHHhhhhccCCCCCC
Q 025613           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITG-FPVIDDDWKLVGLVSDYDLLALDSISGSGRAD  155 (250)
Q Consensus        77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~-~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~  155 (250)
                      .......+++++|++  +++++++++++.+|     ++.|.+++++. +||+|++ +++|+|+..||++++....     
T Consensus        10 ~~~~~~~~v~~im~~--~~~~v~~~~tl~ea-----~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~-----   76 (157)
T 1o50_A           10 HHHMKVKDVCKLISL--KPTVVEEDTPIEEI-----VDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHF-----   76 (157)
T ss_dssp             CTTCBHHHHTTSSCC--CCEEECTTCBHHHH-----HHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHH-----
T ss_pred             hhhhccccHhhcccC--CCceECCCCCHHHH-----HHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhH-----
Confidence            455677899999998  89999999999999     99999999999 9999987 9999999999997642100     


Q ss_pred             CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613          156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  235 (250)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil  235 (250)
                      .....    .+.   .+..........++.++|.+ ++++++++++.+|++.|.+.+++.+||+|++|+++|+||+.||+
T Consensus        77 ~~~~~----~~~---~~~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll  148 (157)
T 1o50_A           77 FGFIP----KEE---LIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL  148 (157)
T ss_dssp             HCCCC--------------CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHH
T ss_pred             Hhhhc----cHH---HHHHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHH
Confidence            00000    000   00000012346789999999 99999999999999999999999999999889999999999999


Q ss_pred             HHHHhhh
Q 025613          236 RAALQIK  242 (250)
Q Consensus       236 ~~l~~~~  242 (250)
                      +++.+..
T Consensus       149 ~~l~~~~  155 (157)
T 1o50_A          149 LALWKGR  155 (157)
T ss_dssp             HHHHHSC
T ss_pred             HHHHHhh
Confidence            9987643

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.83  E-value=8.2e-21  Score=145.40  Aligned_cols=126  Identities=24%  Similarity=0.381  Sum_probs=108.1

Q ss_pred             CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh-hhhccCCCCCCCCC
Q 025613           80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSM  158 (250)
Q Consensus        80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~-~~~~~~~~~~~~~~  158 (250)
                      +...+++++|.+  +++++++++++.++     ++.|.+++++++||+|++|+++|+|+..||++ ++....        
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~--------   69 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLTAA-----AQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL--------   69 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHHHH-----HHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC--------
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHHHH-----HHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCC--------
Confidence            345689999998  89999999999999     99999999999999988899999999999983 422110        


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                         .....++.++|.++++++++++++.+|++.|.+.+.+++||+|+ |+++|+||++||++++
T Consensus        70 -------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           70 -------------------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             -------------------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             -------------------CccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence                               11357899999999999999999999999999999999999996 9999999999999876


Q ss_pred             Hh
Q 025613          239 LQ  240 (250)
Q Consensus       239 ~~  240 (250)
                      .+
T Consensus       130 ~~  131 (133)
T 1y5h_A          130 PE  131 (133)
T ss_dssp             C-
T ss_pred             Hh
Confidence            43

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.83  E-value=2.3e-20  Score=146.10  Aligned_cols=121  Identities=26%  Similarity=0.362  Sum_probs=107.7

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      ++++++|++..+++++.+++++.++     ++.|.++++..+||+|++|+++|+|+..||.+++....            
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a-----~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~------------   90 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDA-----LLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGV------------   90 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHH-----HHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSS------------
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHH-----HHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCC------------
Confidence            5899999875568999999999999     99999999999999998999999999999997643211            


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                                     .....++.++|.++++++++++++.+|++.|.+++++.+||+|++ +++|+||+.||++
T Consensus        91 ---------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           91 ---------------DMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             ---------------CCTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             ---------------CcccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence                           124578999999999999999999999999999999999999954 9999999999975

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.82  E-value=1.1e-19  Score=154.90  Aligned_cols=156  Identities=22%  Similarity=0.280  Sum_probs=112.3

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC--CcEEEEEehHHHHhhhhccC--CCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALDSISG--SGRA  154 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~--g~~~GiVt~~dL~~~~~~~~--~~~~  154 (250)
                      ....++|+|+|++  +++++.+++++.++     .++|.++++++|||||++  |+++|+|++.||++++...-  ....
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~~~-----~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~   81 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYGDL-----LHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQ   81 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHHHH-----HHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSS
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHHHH-----HHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhh
Confidence            4566799999999  89999999999999     999999999999999974  68999999999997643210  0000


Q ss_pred             --C---------------------CCCCCCccc------------------chh--------------------------
Q 025613          155 --D---------------------NSMFPEVDS------------------TWK--------------------------  167 (250)
Q Consensus       155 --~---------------------~~~~~~~~~------------------~~~--------------------------  167 (250)
                        .                     ...+..+..                  .+.                          
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (250)
T 2d4z_A           82 PAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTG  161 (250)
T ss_dssp             CCCCCCBCCC----------------------------------------------------------------------
T ss_pred             hhhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCcccccccccccccccccccccccccc
Confidence              0                     000000000                  000                          


Q ss_pred             ----------chHHHHHHHhccCCCcc--c-ccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHH
Q 025613          168 ----------TFNEVQKLLSKTNGKMV--G-DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV  234 (250)
Q Consensus       168 ----------~~~~~~~~~~~~~~~~v--~-~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Di  234 (250)
                                ..++...........++  . .+|++.|++|.+++++.+++.+|...|++++||++ +|+++||||++||
T Consensus       162 ~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl  240 (250)
T 2d4z_A          162 QVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEI  240 (250)
T ss_dssp             -----CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHH
T ss_pred             ccCcccccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHH
Confidence                      00000111111233444  4 47999999999999999999999999999999998 7999999999999


Q ss_pred             HHHHHhhh
Q 025613          235 VRAALQIK  242 (250)
Q Consensus       235 l~~l~~~~  242 (250)
                      ++++....
T Consensus       241 ~kai~~~~  248 (250)
T 2d4z_A          241 QAAIEGSY  248 (250)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHh
Confidence            99987643

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.82  E-value=7e-20  Score=148.46  Aligned_cols=125  Identities=27%  Similarity=0.340  Sum_probs=111.1

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      ++++++|++  +++++.+++++.+|     ++.|.+++++.+||+|++|+++|+|+.+||++.+...+            
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~ea-----~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~------------   69 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVFDA-----VKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRN------------   69 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHH-----HHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGC------------
T ss_pred             cCHHHhcCC--CCeEECCCCcHHHH-----HHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc------------
Confidence            689999998  89999999999999     99999999999999998899999999999997533111            


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                    ......++.++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||+.||++++.+
T Consensus        70 --------------~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           70 --------------KKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             --------------CCGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             --------------cCcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence                          0123568999999999999999999999999999999999999988999999999999987655

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.82  E-value=1.1e-19  Score=140.40  Aligned_cols=125  Identities=22%  Similarity=0.380  Sum_probs=106.2

Q ss_pred             ceecc---ccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCC
Q 025613           83 YTVGD---FMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  159 (250)
Q Consensus        83 ~~v~~---~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~  159 (250)
                      .++++   +|..  +++++.+++++.++     ++.|.+++++.+||+|++|+++|+|+..||.+++....         
T Consensus         8 ~~v~~~~~~~~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~---------   71 (144)
T 2nyc_A            8 IPIGDLNIITQD--NMKSCQMTTPVIDV-----IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI---------   71 (144)
T ss_dssp             SBGGGSSCCBCS--SCCCBCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----------
T ss_pred             cchhhcCCCCCC--CceEECCCCcHHHH-----HHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccc---------
Confidence            35666   7877  89999999999999     99999999999999998899999999999997632110         


Q ss_pred             CCcccchhchHHHHHHHhccCCCcccccccC------CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHH
Q 025613          160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGN  233 (250)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~D  233 (250)
                                       ......++.++|.+      +++++++++++.+|++.|.+.+.+.+||+|++|+++|+||+.|
T Consensus        72 -----------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~d  134 (144)
T 2nyc_A           72 -----------------YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSD  134 (144)
T ss_dssp             --------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred             -----------------cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHH
Confidence                             01235678999875      6889999999999999999999999999998899999999999


Q ss_pred             HHHHHHh
Q 025613          234 VVRAALQ  240 (250)
Q Consensus       234 il~~l~~  240 (250)
                      |++++.+
T Consensus       135 il~~l~~  141 (144)
T 2nyc_A          135 ILKYILL  141 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999865

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.81  E-value=9.8e-20  Score=146.89  Aligned_cols=156  Identities=22%  Similarity=0.327  Sum_probs=115.2

Q ss_pred             CCCCceeccccccCCc--eeEe--CCCCchhcccchhHHHHHHHcCCCeeEEE--eCCCcEEEEEehHHHHhhhhccCCC
Q 025613           79 SSGVYTVGDFMTTKEE--LHVV--KPTTTVDEAFVPTALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSG  152 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~--~~~v--~~~~~v~~a~~~~~~~~~~~~~~~~~~Vv--d~~g~~~GiVt~~dL~~~~~~~~~~  152 (250)
                      .+...+++++|++..+  ++++  .+++++.+|     ++.|.+++++++||+  |++|+++|+|+..||++++......
T Consensus         7 ~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a-----~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~   81 (185)
T 2j9l_A            7 FAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDV-----ETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKK   81 (185)
T ss_dssp             --CCCBHHHHSBSCTTSCCCCCEESSCEEHHHH-----HHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTS
T ss_pred             hhccCcHHHHhcccccCceEEEecCCCccHHHH-----HHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhccc
Confidence            4567799999998321  7788  999999999     999999999999999  7789999999999999864321100


Q ss_pred             CCCCCCCCCcccchhchHHHH--HHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q 025613          153 RADNSMFPEVDSTWKTFNEVQ--KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT  230 (250)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt  230 (250)
                      .. ..    +...+..+....  .........++.++|.++++++.+++++.+|++.|.+++.+++||+| +|+++|+||
T Consensus        82 ~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit  155 (185)
T 2j9l_A           82 QD-GV----VSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIIT  155 (185)
T ss_dssp             CS-CC----CTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEE
T ss_pred             CC-Cc----cccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEE
Confidence            00 00    000000000000  00001245689999999999999999999999999999999999999 899999999


Q ss_pred             hHHHHHHHHhhhhhh
Q 025613          231 RGNVVRAALQIKHAT  245 (250)
Q Consensus       231 ~~Dil~~l~~~~~~~  245 (250)
                      +.||++++.+.....
T Consensus       156 ~~dll~~l~~~~~~~  170 (185)
T 2j9l_A          156 KKDVLKHIAQMANQD  170 (185)
T ss_dssp             HHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHhhccc
Confidence            999999998776543

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.81  E-value=9.6e-20  Score=143.55  Aligned_cols=129  Identities=25%  Similarity=0.435  Sum_probs=112.2

Q ss_pred             ceeccccccC----CceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           83 YTVGDFMTTK----EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        83 ~~v~~~m~~~----~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      .+++++|++.    .+++++.+++++.+|     ++.|.+++++.+||++ +|+++|+|+.+||++++...+.       
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a-----~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~-------   73 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDA-----IKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQER-------   73 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHH-----HHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTC-------
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHH-----HHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccC-------
Confidence            4799999863    367999999999999     9999999999999965 8899999999999976432220       


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                         .....++.++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||+.||++++
T Consensus        74 -------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l  133 (157)
T 4fry_A           74 -------------------SSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSV  133 (157)
T ss_dssp             -------------------CSSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             -------------------CccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence                               1246789999999999999999999999999999999999999 79999999999999999


Q ss_pred             Hhhhhh
Q 025613          239 LQIKHA  244 (250)
Q Consensus       239 ~~~~~~  244 (250)
                      .+....
T Consensus       134 ~~~~~~  139 (157)
T 4fry_A          134 IADQQF  139 (157)
T ss_dssp             HTTCCC
T ss_pred             HHHHHh
Confidence            876544

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.81  E-value=1.9e-19  Score=142.30  Aligned_cols=134  Identities=19%  Similarity=0.329  Sum_probs=112.4

Q ss_pred             CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC--CCcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613           80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNS  157 (250)
Q Consensus        80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~--~g~~~GiVt~~dL~~~~~~~~~~~~~~~  157 (250)
                      ...++++++|++  +++++.+++++.+|     ++.|.+++++++||+|+  +|+++|+|+..||.+++.......    
T Consensus        10 ~~~~~v~dim~~--~~~~v~~~~~~~~a-----~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~----   78 (164)
T 2pfi_A           10 SHHVRVEHFMNH--SITTLAKDTPLEEV-----VKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSR----   78 (164)
T ss_dssp             CCSCBHHHHCBC--CCCCEETTCBHHHH-----HHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC---------
T ss_pred             ccCCCHHHHcCC--CCeEECCCCcHHHH-----HHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhcccc----
Confidence            456789999998  89999999999999     99999999999999996  799999999999997643211000    


Q ss_pred             CCCCcccchhchHHHHHHHhccCCCcccccccCC------CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeh
Q 025613          158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA------PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR  231 (250)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~  231 (250)
                                         ......++.++|.++      ++++.+++++.+|++.|.+.+.+.+||+| +|+++|+||+
T Consensus        79 -------------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~  138 (164)
T 2pfi_A           79 -------------------APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSW  138 (164)
T ss_dssp             ---------------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEH
T ss_pred             -------------------CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEH
Confidence                               011245678888776      78999999999999999999999999999 7999999999


Q ss_pred             HHHHHHHHhhhhh
Q 025613          232 GNVVRAALQIKHA  244 (250)
Q Consensus       232 ~Dil~~l~~~~~~  244 (250)
                      .||++++.+....
T Consensus       139 ~dil~~~~~~~~~  151 (164)
T 2pfi_A          139 VEMKKAISNLTNP  151 (164)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHhhhCC
Confidence            9999999886644

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.80  E-value=3.2e-19  Score=154.40  Aligned_cols=183  Identities=19%  Similarity=0.283  Sum_probs=140.2

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc-----ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS-----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      .+.++..+.++.++...|.+... .++...+..     +...+. ...  ........+++++|.+  +++++.+++++.
T Consensus       102 ~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl-~~~--~~~~~~~~~v~~~m~~--~~~~v~~~~~l~  176 (296)
T 3ddj_A          102 NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREF-LLL--YKDLDEIFPVKVFMST--KVQTIYKEVRLD  176 (296)
T ss_dssp             SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH-GGG--GGGSCCCCBHHHHSBC--SCCCEETTSBHH
T ss_pred             CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHH-HHh--hhcccccccHHHhhcC--CCeEECCCCCHH
Confidence            45677888999999998877664 455443211     111111 000  0112344589999988  899999999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccCCCccc
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVG  185 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  185 (250)
                      ++     ++.|.+++++.+||+|++|+++|+||..|+++.+...                |..+..     ......++.
T Consensus       177 ~~-----~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------~~~~~~-----~~~~~~~v~  230 (296)
T 3ddj_A          177 QA-----VKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA----------------VDKLDP-----DYFYGKVVK  230 (296)
T ss_dssp             HH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH----------------HHHTCT-----HHHHTCBHH
T ss_pred             HH-----HHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH----------------HhhcCh-----hhhcCcCHH
Confidence            99     9999999999999999999999999999999763200                000000     112357899


Q ss_pred             ccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhhhh
Q 025613          186 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT  245 (250)
Q Consensus       186 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~~~  245 (250)
                      ++|.++++++.+++++.+|++.|.+.+++++||+|++|+++|+||+.||++++.+.....
T Consensus       231 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~~~~  290 (296)
T 3ddj_A          231 DVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVME  290 (296)
T ss_dssp             HHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHhcch
Confidence            999999999999999999999999999999999998999999999999999998876543

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.79  E-value=8.4e-19  Score=145.77  Aligned_cols=121  Identities=26%  Similarity=0.345  Sum_probs=110.2

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCC
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  161 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~  161 (250)
                      ..+++++|.+  +++++.+++++.++     ++.|.++++.++||+|++|+++|+|+.+|+.+..               
T Consensus        12 ~~~~~~~~~~--~~~~v~~~~tv~ea-----~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~---------------   69 (213)
T 1vr9_A           12 HMKVKKWVTQ--DFPMVEESATVREC-----LHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD---------------   69 (213)
T ss_dssp             -CBGGGGCBS--CSCEEETTCBHHHH-----HHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC---------------
T ss_pred             ccCHHHhhcC--CCeEECCCCcHHHH-----HHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhc---------------
Confidence            3478899998  89999999999999     9999999999999999889999999999998641               


Q ss_pred             cccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                                        ...++.++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+...
T Consensus        70 ------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~  131 (213)
T 1vr9_A           70 ------------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  131 (213)
T ss_dssp             ------------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             ------------------CCCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence                              24679999999999999999999999999999999999999889999999999999988764


Q ss_pred             h
Q 025613          242 K  242 (250)
Q Consensus       242 ~  242 (250)
                      .
T Consensus       132 ~  132 (213)
T 1vr9_A          132 L  132 (213)
T ss_dssp             C
T ss_pred             h
Confidence            4

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.79  E-value=6e-19  Score=153.16  Aligned_cols=125  Identities=26%  Similarity=0.372  Sum_probs=113.5

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHc-----CCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR  153 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~-----~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~  153 (250)
                      .....+++++|++  +++++++++++.++     ++.|.++     ++.++||+|++|+++|+|+.+|++..        
T Consensus       133 ~~~~~~v~~iM~~--~~~~v~~~~tv~ea-----~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~--------  197 (286)
T 2oux_A          133 HYEDETAGAIMTT--EFVSIVANQTVRSA-----MYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN--------  197 (286)
T ss_dssp             TSCTTBHHHHCBS--CCCEECSSSBHHHH-----HHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS--------
T ss_pred             cCChHHHHHhCCC--CceEECCCCcHHHH-----HHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC--------
Confidence            3456789999998  89999999999999     9999987     78889999988999999999999853        


Q ss_pred             CCCCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHH
Q 025613          154 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGN  233 (250)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~D  233 (250)
                                               ....++.++|.+++++|++++++.+|++.|.+++.+.+||||++|+++|+||..|
T Consensus       198 -------------------------~~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~D  252 (286)
T 2oux_A          198 -------------------------DDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDD  252 (286)
T ss_dssp             -------------------------CTTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHH
T ss_pred             -------------------------CCCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHH
Confidence                                     2357899999999999999999999999999999999999998999999999999


Q ss_pred             HHHHHHhhhh
Q 025613          234 VVRAALQIKH  243 (250)
Q Consensus       234 il~~l~~~~~  243 (250)
                      |++.+.+...
T Consensus       253 il~~i~~e~~  262 (286)
T 2oux_A          253 IIDVIDDEAA  262 (286)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhH
Confidence            9999877553

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.78  E-value=1.5e-18  Score=149.92  Aligned_cols=122  Identities=34%  Similarity=0.474  Sum_probs=108.9

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHc-----CCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD  155 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~-----~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~  155 (250)
                      ...+++++|++  +++++++++++.++     ++.|.++     ++..+||+|++|+++|+|+.+|++..          
T Consensus       133 ~~~~v~~iM~~--~~~~v~~~~tv~ea-----~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----------  195 (278)
T 2yvy_A          133 EEDEAGGLMTP--EYVAVREGMTVEEV-----LRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA----------  195 (278)
T ss_dssp             CTTBGGGTCBS--CCCEECTTSBHHHH-----HHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS----------
T ss_pred             CcchHHhhcCC--CceEECCCCcHHHH-----HHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC----------
Confidence            45589999998  89999999999999     9999987     68999999988999999999999853          


Q ss_pred             CCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613          156 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  235 (250)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil  235 (250)
                                             ....++.++|.+++++|++++++.+|++.|.+++.+.+||||++|+++|+||..||+
T Consensus       196 -----------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil  252 (278)
T 2yvy_A          196 -----------------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL  252 (278)
T ss_dssp             -----------------------CTTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHH
T ss_pred             -----------------------CCCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHH
Confidence                                   235789999999999999999999999999999999999999899999999999999


Q ss_pred             HHHHhhh
Q 025613          236 RAALQIK  242 (250)
Q Consensus       236 ~~l~~~~  242 (250)
                      +.+.+..
T Consensus       253 ~~i~~e~  259 (278)
T 2yvy_A          253 DVLEAEA  259 (278)
T ss_dssp             HHC----
T ss_pred             HHHHHHh
Confidence            9877654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.78  E-value=1.1e-18  Score=149.72  Aligned_cols=199  Identities=18%  Similarity=0.236  Sum_probs=133.8

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCCC----ccc-ccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRS----SAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~  106 (250)
                      ++.+..+.++.+++..|.+... .++...+.    +.. ..+...............+++++|.+  +++++++++++.+
T Consensus        70 ~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~  147 (282)
T 2yzq_A           70 VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQR--YVSIVWEGTPLKA  147 (282)
T ss_dssp             CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSBS--CCCCEETTSBHHH
T ss_pred             CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCcccCcHHHHhCC--CCEEECCCCCHHH
Confidence            5677889999999999876654 44444322    111 11111101101112235688999987  8999999999999


Q ss_pred             ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCC-CCCCc----ccchhchHHHHHHHhccCC
Q 025613          107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS-MFPEV----DSTWKTFNEVQKLLSKTNG  181 (250)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~  181 (250)
                      +     ++.|.+++++++||+|++|+++|+|+..|++........-..... ..+..    .+.+..+..  ........
T Consensus       148 ~-----~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  220 (282)
T 2yzq_A          148 A-----LKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFE--KFELQLPN  220 (282)
T ss_dssp             H-----HHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------------------------CC
T ss_pred             H-----HHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHh--Hhhhhhcc
Confidence            9     999999999999999988999999999999832110000000000 00000    000000000  00112346


Q ss_pred             CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          182 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       182 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      .++.++|+++++++++++++.+|+++|.+++++++||+|++|+++|+||+.||++++.+
T Consensus       221 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          221 KPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             CBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred             CCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence            78999999999999999999999999999999999999977899999999999987654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.78  E-value=6.6e-19  Score=148.95  Aligned_cols=148  Identities=22%  Similarity=0.320  Sum_probs=108.5

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCC--------
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR--------  153 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~--------  153 (250)
                      ..+++++|++  +++++.+++++.+|     ++.|.+++++.+||+|++|+++|+||..|+++++.......        
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a-----~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~   78 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMA-----WNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATS   78 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHH-----HHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCC
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHH-----HHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCC
Confidence            3589999998  89999999999999     99999999999999999899999999999998653211000        


Q ss_pred             -----------------CCCCC----------------------------------------------------------
Q 025613          154 -----------------ADNSM----------------------------------------------------------  158 (250)
Q Consensus       154 -----------------~~~~~----------------------------------------------------------  158 (250)
                                       .....                                                          
T Consensus        79 ~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~  158 (245)
T 3l2b_A           79 LDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIE  158 (245)
T ss_dssp             HHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHH
T ss_pred             HHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHH
Confidence                             00000                                                          


Q ss_pred             ------CCCcccchhchHHHHHHHhccCCCccccccc-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeh
Q 025613          159 ------FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR  231 (250)
Q Consensus       159 ------~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~  231 (250)
                            .+.+.+.++.|.....   .....++.++|+ ++++++++++++.+|+++|.+++++.+||+|++|+++|+||+
T Consensus       159 ~a~~~~~~~i~t~~d~~~~~~~---~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~  235 (245)
T 3l2b_A          159 LAKKNNITVITTPHDSFTASRL---IVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIAR  235 (245)
T ss_dssp             HHHHHTCEEEECSSCHHHHHHH---GGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEC
T ss_pred             HHHHcCCeEEEeCCChHHHHHH---HhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEH
Confidence                  0000111111211111   123567999999 899999999999999999999999999999988999999999


Q ss_pred             HHHHHHHH
Q 025613          232 GNVVRAAL  239 (250)
Q Consensus       232 ~Dil~~l~  239 (250)
                      +|++++..
T Consensus       236 ~dll~~~~  243 (245)
T 3l2b_A          236 FHLISTHK  243 (245)
T ss_dssp             C-------
T ss_pred             HHhhchhh
Confidence            99998754

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.77  E-value=3.5e-18  Score=147.86  Aligned_cols=174  Identities=24%  Similarity=0.287  Sum_probs=137.7

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc---ccccccccccCCCCC---------CCCCceeccccccCCceeEe
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS---AVFASGTLTANSAAP---------SSGVYTVGDFMTTKEELHVV   98 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~v~~~m~~~~~~~~v   98 (250)
                      .++++..+.++.+++..|.+... .++...+..   +...+..........         .....+++++|++  +++++
T Consensus        29 ~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v  106 (296)
T 3ddj_A           29 NPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTP--NPVTV  106 (296)
T ss_dssp             SCCEECTTSBHHHHHHHTTGGGCCEEEEESSSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEE--SCCCE
T ss_pred             CCcEECCCccHHHHHHHHHHCCCceEEEECCeEEEEEeHHHHHHHhcccccccccchhhHHHhcccHHHhccC--CCEEE
Confidence            57789999999999999987765 444444221   111111110000000         0125689999998  89999


Q ss_pred             CCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhc
Q 025613           99 KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  178 (250)
Q Consensus        99 ~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (250)
                      .+++++.++     ++.|.+++++++||+|++|+++|+||.+|+++++..                             .
T Consensus       107 ~~~~~~~~a-----~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~-----------------------------~  152 (296)
T 3ddj_A          107 YNTSDEFTA-----INIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD-----------------------------L  152 (296)
T ss_dssp             ETTSCHHHH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG-----------------------------S
T ss_pred             cCCCCHHHH-----HHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhc-----------------------------c
Confidence            999999999     999999999999999989999999999999975321                             2


Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          179 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       179 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                      ....++.++|.++++++.+++++.+|++.|.+.+.+.+||+|++|+++|+||..|+++++.+.
T Consensus       153 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~  215 (296)
T 3ddj_A          153 DEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA  215 (296)
T ss_dssp             CCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             cccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence            235689999999999999999999999999999999999999899999999999999998743

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.76  E-value=2.1e-18  Score=147.39  Aligned_cols=181  Identities=15%  Similarity=0.249  Sum_probs=132.9

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc-----ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS-----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      .+.++..+.++.++...+.+... .++...+..     ....+......  .......+++++|++  ++.++++++++.
T Consensus        93 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~--~~~~~~~~v~~~m~~--~~~~v~~~~~l~  168 (280)
T 3kh5_A           93 NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALL--DKIDENEVIDDYITR--DVIVATPGERLK  168 (280)
T ss_dssp             SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHG--GGSCTTCBSGGGCBC--SCCCBCTTCBHH
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHh--hcCCCCCCHHHHhCC--CCeEECCCCcHH
Confidence            46678889999999999887665 444443221     11111100000  112234489999988  899999999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccCCCccc
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVG  185 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  185 (250)
                      ++     ++.|.+++++.+||+ ++|+++|+||..|+++.+....              .|+.+..  .........++.
T Consensus       169 ~~-----~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~~--------------~~~~~~~--~~~~~~~~~~v~  226 (280)
T 3kh5_A          169 DV-----ARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSDW--------------AFNHMQT--GNVREITNVRME  226 (280)
T ss_dssp             HH-----HHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSHH--------------HHHHHHS--CCTHHHHHCBHH
T ss_pred             HH-----HHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhhh--------------hhhhhcc--cchhhhhCCcHH
Confidence            99     999999999999999 5789999999999997642110              0000000  000011346899


Q ss_pred             ccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          186 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       186 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                      ++|.++++++++++++.+|++.|.+++++++||+|++|+++|+||++||++++
T Consensus       227 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          227 EIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             HHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred             HHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence            99999999999999999999999999999999999888999999999999865

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.76  E-value=5.5e-18  Score=148.37  Aligned_cols=176  Identities=20%  Similarity=0.272  Sum_probs=132.8

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCCCcc-----cc-----ccccccc--CCCCCCCCCceeccc---cccCCcee
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSSA-----VF-----ASGTLTA--NSAAPSSGVYTVGDF---MTTKEELH   96 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~-----~~-----~~~~~~~--~~~~~~~~~~~v~~~---m~~~~~~~   96 (250)
                      +.++..+.++.+++..+.+... .++...+...     ..     .+.....  ..........+++++   |.+  +++
T Consensus       124 ~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~--~~~  201 (323)
T 3t4n_C          124 TASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQD--NMK  201 (323)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCT--TCC
T ss_pred             ceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCC--CcE
Confidence            4466778889998888866554 3333322110     00     0000000  000022334578999   877  899


Q ss_pred             EeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHH
Q 025613           97 VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLL  176 (250)
Q Consensus        97 ~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (250)
                      ++.+++++.++     ++.|.+++++.+||+|++|+++|+||..|+++++....                          
T Consensus       202 ~v~~~~~~~~~-----~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~--------------------------  250 (323)
T 3t4n_C          202 SCQMTTPVIDV-----IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI--------------------------  250 (323)
T ss_dssp             CBCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTH--------------------------
T ss_pred             EECCCCcHHHH-----HHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhch--------------------------
Confidence            99999999999     99999999999999999999999999999997643110                          


Q ss_pred             hccCCCcccccccC------CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          177 SKTNGKMVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       177 ~~~~~~~v~~im~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                      ......++.++|.+      +++++++++++.+|++.|.+++++++||+|++|+++|+||..||++++...
T Consensus       251 ~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          251 YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             HHHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             hhhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            01235689999987      789999999999999999999999999999889999999999999998753

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.74  E-value=1.7e-17  Score=141.71  Aligned_cols=173  Identities=20%  Similarity=0.349  Sum_probs=135.0

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCC-Cc-----ccccccccccC----------CCCC---CCCCceecccccc
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR-SS-----AVFASGTLTAN----------SAAP---SSGVYTVGDFMTT   91 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~-----~~~~~~~~~~~----------~~~~---~~~~~~v~~~m~~   91 (250)
                      .+.++..+.++.+++..|.+... .++...+ ..     +...+......          ....   .....+++++|++
T Consensus        13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~   92 (280)
T 3kh5_A           13 KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEE   92 (280)
T ss_dssp             CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSBC
T ss_pred             CcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHHhcCC
Confidence            46678889999999999987765 5665553 11     11111100000          0000   0114589999998


Q ss_pred             CCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHH
Q 025613           92 KEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE  171 (250)
Q Consensus        92 ~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (250)
                        ++.++++++++.++     ++.|.+++++++||+|++|+++|+|+..|+++.+...                      
T Consensus        93 --~~~~v~~~~~~~~a-----~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------------  143 (280)
T 3kh5_A           93 --NVITLKENADIDEA-----IETFLTKNVGGAPIVNDENQLISLITERDVIRALLDK----------------------  143 (280)
T ss_dssp             --SCCCEETTCBHHHH-----HHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGG----------------------
T ss_pred             --CCEEECCCCCHHHH-----HHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhc----------------------
Confidence              89999999999999     9999999999999999999999999999999763211                      


Q ss_pred             HHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          172 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       172 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                            .....++.++|.++++++++++++.++++.|.+.+.+.+||+ ++|+++|+||.+|+++++.+
T Consensus       144 ------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~  205 (280)
T 3kh5_A          144 ------IDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGS  205 (280)
T ss_dssp             ------SCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTS
T ss_pred             ------CCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhh
Confidence                  122458999999999999999999999999999999999999 48999999999999998754

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.73  E-value=2.4e-17  Score=152.48  Aligned_cols=123  Identities=33%  Similarity=0.465  Sum_probs=111.6

Q ss_pred             CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHc-----CCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCC
Q 025613           80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRA  154 (250)
Q Consensus        80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~-----~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~  154 (250)
                      ....+++++|++  +++++++++++.++     ++.|+++     ++..+||+|++|+++|+|+.+|++..         
T Consensus       152 ~~~~~v~~iM~~--~~v~v~~~~tv~ea-----~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~---------  215 (473)
T 2zy9_A          152 YEEDEAGGLMTP--EYVAVREGMTVEEV-----LRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---------  215 (473)
T ss_dssp             SCTTBSTTTCBS--CEEEECTTCBHHHH-----HHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS---------
T ss_pred             CCCCCHHHhCCC--CceEeCCCCcHHHH-----HHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC---------
Confidence            356689999998  89999999999999     9999986     47899999988999999999999852         


Q ss_pred             CCCCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHH
Q 025613          155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV  234 (250)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Di  234 (250)
                                              ....++.++|+++++++++++++.++++.|.+++.+.+||||++|+++|+||.+|+
T Consensus       216 ------------------------~~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Di  271 (473)
T 2zy9_A          216 ------------------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDV  271 (473)
T ss_dssp             ------------------------CTTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHH
T ss_pred             ------------------------CCCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhh
Confidence                                    23578999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 025613          235 VRAALQIK  242 (250)
Q Consensus       235 l~~l~~~~  242 (250)
                      ++.+.+..
T Consensus       272 l~~i~~e~  279 (473)
T 2zy9_A          272 LDVLEAEA  279 (473)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987644

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.73  E-value=1.2e-18  Score=166.54  Aligned_cols=157  Identities=18%  Similarity=0.122  Sum_probs=109.6

Q ss_pred             CCCceeccccccCCceeEeCCCCchhcccchhHHHHHH-HcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILV-EKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~-~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      ...++++|+|++++++.++++++++.|+     .+.|. +++++++||+|++|+++|+|+.+||++.+.........+..
T Consensus       450 ~~~~~V~diM~p~~~v~~v~~~~t~~e~-----~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~  524 (632)
T 3org_A          450 SPEMTAREIMHPIEGEPHLFPDSEPQHI-----KGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIA  524 (632)
T ss_dssp             CTTSBHHHHCBCTTTSCCBCSSSCHHHH-----HHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------
T ss_pred             cccCcHHHHhhcCCCceEecCCCcHHHH-----HHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccc
Confidence            3678999999954589999999999999     99999 79999999999999999999999999865432111000000


Q ss_pred             ---CCCcccchhchHHHHHHHh-----------------ccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEE
Q 025613          159 ---FPEVDSTWKTFNEVQKLLS-----------------KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPV  218 (250)
Q Consensus       159 ---~~~~~~~~~~~~~~~~~~~-----------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV  218 (250)
                         .....+.++--+.......                 .....++.++|+++|+++++++++.+|+++|.+++++++||
T Consensus       525 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpV  604 (632)
T 3org_A          525 GHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYV  604 (632)
T ss_dssp             ----------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEE
T ss_pred             cccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEE
Confidence               0000000000000000000                 01122488999999999999999999999999999999999


Q ss_pred             EcCCCcEEEEEehHHHHHHHHhhh
Q 025613          219 VDADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       219 Vd~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                      + ++|+++||||++||++++.+..
T Consensus       605 v-e~G~lvGIVT~~Dll~~~~~~~  627 (632)
T 3org_A          605 T-ERGKLVGIVEREDVAYGYSNSL  627 (632)
T ss_dssp             E-ETTEEEEEEEGGGTEECCCC--
T ss_pred             E-ECCEEEEEEehhhHHHHHhhhH
Confidence            9 5899999999999987765543

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.72  E-value=1e-17  Score=156.97  Aligned_cols=130  Identities=18%  Similarity=0.215  Sum_probs=113.2

Q ss_pred             CCCCceeccccccCCceeEeCCC-CchhcccchhHHHHHHHcCCCeeEEEe-CCCcEEEEEehHHHHhhhhccCCCCCCC
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPT-TTVDEAFVPTALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADN  156 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~-~~v~~a~~~~~~~~~~~~~~~~~~Vvd-~~g~~~GiVt~~dL~~~~~~~~~~~~~~  156 (250)
                      .+...+++++|++  +++++.++ +++.++     ++.|.+++++++||+| ++|+++|+||.+||++.+....      
T Consensus       380 ~l~~~~V~diM~~--~~vtv~~~~~tv~ea-----~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~------  446 (527)
T 3pc3_A          380 WWWSLAIAELELP--APPVILKSDATVGEA-----IALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMN------  446 (527)
T ss_dssp             TTTTSBGGGGCCC--CCSCCEETTCBHHHH-----HHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHC------
T ss_pred             cccCCcHHHhCcC--CCeEEcCCCCcHHHH-----HHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhcc------
Confidence            4567899999998  89999999 999999     9999999999999999 7899999999999997643111      


Q ss_pred             CCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC----CcEEEEEehH
Q 025613          157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD----GKLVGIITRG  232 (250)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~----g~~vGiIt~~  232 (250)
                                           .....++.++|+++++++++++++.+++++|.+.++  +||||++    |+++||||+.
T Consensus       447 ---------------------~~~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~  503 (527)
T 3pc3_A          447 ---------------------RQQSDPAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKL  503 (527)
T ss_dssp             ---------------------CCTTSBGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHH
T ss_pred             ---------------------CcCCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHH
Confidence                                 234678999999999999999999999999976664  7999974    8999999999


Q ss_pred             HHHHHHHhhhhh
Q 025613          233 NVVRAALQIKHA  244 (250)
Q Consensus       233 Dil~~l~~~~~~  244 (250)
                      ||++++.+....
T Consensus       504 Dll~~l~~~~~~  515 (527)
T 3pc3_A          504 DVTTFIAAGKQK  515 (527)
T ss_dssp             HHHHHHHTCCCC
T ss_pred             HHHHHHHhcccc
Confidence            999999887643

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.72  E-value=3.9e-17  Score=139.89  Aligned_cols=167  Identities=20%  Similarity=0.275  Sum_probs=114.7

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccchh
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPT  111 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~  111 (250)
                      +.++..+.++.+++..+.+... .++...+..-..+  .+............+++++|.+  +++++++++++.++    
T Consensus        11 ~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~G--iv~~~dl~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a----   82 (282)
T 2yzq_A           11 PVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVG--IISVKRILVNPDEEQLAMLVKR--DVPVVKENDTLKKA----   82 (282)
T ss_dssp             CCCEESSCC------------CCEEEEECTTCCEEE--EEESSCC----------CCCBS--CCCEEETTSBHHHH----
T ss_pred             CeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEE--EEEHHHHHhhhccCCHHHHcCC--CCcEECCCCcHHHH----
Confidence            5567778888888888866554 4554442110000  0000111123345689999998  78999999999999    


Q ss_pred             HHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHh-hhhccCCCCCCCCCCCCcccchhchHHHHHHHhccCCCcccccccC
Q 025613          112 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP  190 (250)
Q Consensus       112 ~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~  190 (250)
                       ++.|.+++...+||+|++|+++|+||..|+.+ .+....                           .....++.++|.+
T Consensus        83 -~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~---------------------------~~~~~~v~~~m~~  134 (282)
T 2yzq_A           83 -AKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSE---------------------------KYKGVEIEPYYQR  134 (282)
T ss_dssp             -HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCS---------------------------GGGGCBSTTTSBS
T ss_pred             -HHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccC---------------------------CcccCcHHHHhCC
Confidence             99999999999999998899999999999997 532110                           1124678899999


Q ss_pred             CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613          191 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  235 (250)
Q Consensus       191 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil  235 (250)
                      +++++++++++.++++.|.+++++.+||+|++|+++|+||..|++
T Consensus       135 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          135 YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL  179 (282)
T ss_dssp             CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGG
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHh
Confidence            999999999999999999999999999999889999999999999

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.71  E-value=4.9e-17  Score=142.93  Aligned_cols=178  Identities=16%  Similarity=0.160  Sum_probs=131.3

Q ss_pred             ceecCCCChhHHHHHhhhcCC-eeeeeCC--C-----cc--c-ccccccccC--CCCCCCCCceecc---ccccCCceeE
Q 025613           34 PCLLLSRPGCRVFSVLATSSD-RVSALRR--S-----SA--V-FASGTLTAN--SAAPSSGVYTVGD---FMTTKEELHV   97 (250)
Q Consensus        34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~-----~~--~-~~~~~~~~~--~~~~~~~~~~v~~---~m~~~~~~~~   97 (250)
                      .++..+.++.+++..|.+... .++...+  .     ..  . ..+......  .........++++   +|.+  ++.+
T Consensus       120 ~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~--~~~~  197 (334)
T 2qrd_G          120 IYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWS--NLAT  197 (334)
T ss_dssp             CCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCS--SCCC
T ss_pred             eeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHhCCcccC--CceE
Confidence            566678889999988876654 3333221  1     10  0 001000000  0001122457888   4877  8999


Q ss_pred             eCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHh
Q 025613           98 VKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS  177 (250)
Q Consensus        98 v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (250)
                      +.+++++.++     ++.|.+++++++||+|++|+++|+|+..||++++....                          .
T Consensus       198 v~~~~~~~~~-----~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~--------------------------~  246 (334)
T 2qrd_G          198 ASMETKVYDV-----IKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGD--------------------------Y  246 (334)
T ss_dssp             BCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSC--------------------------G
T ss_pred             ECCCCcHHHH-----HHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccc--------------------------c
Confidence            9999999999     99999999999999998899999999999997642110                          0


Q ss_pred             ccCCCcccccccC------CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhhhh
Q 025613          178 KTNGKMVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA  244 (250)
Q Consensus       178 ~~~~~~v~~im~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~~~  244 (250)
                      .....++.++|.+      +++++.+++++.+|++.|.+++++++||+|++|+++|+||+.||++++......
T Consensus       247 ~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~~~  319 (334)
T 2qrd_G          247 SNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTT  319 (334)
T ss_dssp             GGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCCC-
T ss_pred             ccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhcccc
Confidence            1124678889984      799999999999999999999999999999889999999999999998876543

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.71  E-value=4.4e-17  Score=151.91  Aligned_cols=118  Identities=25%  Similarity=0.441  Sum_probs=107.3

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC--CCcEEEEEehHHHHhhhhccCCCCCCCCCCCC
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPE  161 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~--~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~  161 (250)
                      +.++.|..  +++++.+++++.++     +++|.+++++++||+|+  +|+++|+|+.+||+..                
T Consensus       114 ~~~~~m~~--d~v~l~~~~tv~ea-----~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~----------------  170 (511)
T 3usb_A          114 RSESGVIS--DPFFLTPEHQVYDA-----EHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI----------------  170 (511)
T ss_dssp             TSSSCSSS--SCCCBCTTSBHHHH-----HHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC----------------
T ss_pred             cccccccc--CCEEECCCCCHHHH-----HHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh----------------
Confidence            45566777  88999999999999     99999999999999998  8999999999999741                


Q ss_pred             cccchhchHHHHHHHhccCCCcccccccC-CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                      .....++.++|++ +++++++++++.+++++|.+++++.+||||++|+++|+||.+||++.+..
T Consensus       171 ----------------~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          171 ----------------QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             ----------------CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ----------------ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence                            2346789999997 89999999999999999999999999999999999999999999999865

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.66  E-value=4.9e-16  Score=136.39  Aligned_cols=178  Identities=20%  Similarity=0.271  Sum_probs=128.1

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCC---Cc--cc-ccccccccC-----CCCCCCCCceeccc--cc-cCCcee
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR---SS--AV-FASGTLTAN-----SAAPSSGVYTVGDF--MT-TKEELH   96 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~---~~--~~-~~~~~~~~~-----~~~~~~~~~~v~~~--m~-~~~~~~   96 (250)
                      .+.++..+.++.+++..|.+... .++...+   ..  .. ..+......     .........+++++  |. .  +++
T Consensus       127 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~  204 (330)
T 2v8q_E          127 PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA--NIA  204 (330)
T ss_dssp             CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCS--SCC
T ss_pred             CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccCcC--Cce
Confidence            35667778899999988865554 3443332   11  11 111000000     00001112344554  43 4  789


Q ss_pred             EeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHH
Q 025613           97 VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLL  176 (250)
Q Consensus        97 ~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (250)
                      ++.+++++.++     ++.|.+++++++||+|++|+++|+|+..|++++....+.                         
T Consensus       205 ~v~~~~~l~~~-----~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~-------------------------  254 (330)
T 2v8q_E          205 MVRTTTPVYVA-----LGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTY-------------------------  254 (330)
T ss_dssp             CEETTCBHHHH-----HHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCC-------------------------
T ss_pred             EECCCCCHHHH-----HHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhcccc-------------------------
Confidence            99999999999     999999999999999988999999999999976432110                         


Q ss_pred             hccCCCcccccc------cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613          177 SKTNGKMVGDLM------TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       177 ~~~~~~~v~~im------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                       .....++.++|      .++++++++++++.+|++.|.+++++++||+|++|+++|+||..||++++.+..
T Consensus       255 -~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~~  325 (330)
T 2v8q_E          255 -NNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG  325 (330)
T ss_dssp             -CCCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSSC
T ss_pred             -ccccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhhc
Confidence             01134666666      578999999999999999999999999999998899999999999999987754

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.65  E-value=2.9e-17  Score=152.59  Aligned_cols=117  Identities=22%  Similarity=0.346  Sum_probs=93.1

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcc
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  163 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~  163 (250)
                      +++++|..  +++++.+++++.++     ++.|.+++++++||+|++|+++|+||.+||+..                  
T Consensus        90 ~~~~~m~~--d~v~v~~~~tv~ea-----~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~------------------  144 (496)
T 4fxs_A           90 IFEAGVVT--HPVTVRPEQTIADV-----MELTHYHGFAGFPVVTENNELVGIITGRDVRFV------------------  144 (496)
T ss_dssp             HCCC--CB--CCCCBCSSSBHHHH-----HHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC------------------
T ss_pred             cccccccc--CceEECCCCCHHHH-----HHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc------------------
Confidence            56788988  89999999999999     999999999999999988999999999999732                  


Q ss_pred             cchhchHHHHHHHhccCCCccccccc-C-CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          164 STWKTFNEVQKLLSKTNGKMVGDLMT-P-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~v~~im~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                                    .....++.++|+ + +++++++++++.+++++|.+++++.+||||++|+++|+||++||++...
T Consensus       145 --------------~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          145 --------------TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             --------------CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred             --------------ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence                          234678999998 4 5899999999999999999999999999999999999999999998743

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.64  E-value=5.2e-16  Score=136.27  Aligned_cols=145  Identities=19%  Similarity=0.232  Sum_probs=110.9

Q ss_pred             CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      +...+++++|+++.++.++++++++.+|     ++.|.+++++++||++++ ++++|+|+..|++..+........  ..
T Consensus        32 l~~~~v~dim~p~~~v~~v~~~~~v~~a-----~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~--~~  104 (330)
T 2v8q_E           32 MKSHRCYDLIPTSSKLVVFDTSLQVKKA-----FFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL--VQ  104 (330)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHH-----HHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT--TT
T ss_pred             HHcCcHhhhccCCCcEEEEeCCCcHHHH-----HHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc--cc
Confidence            3456899999655589999999999999     999999999999999987 789999999999975421100000  00


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVRA  237 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~~vGiIt~~Dil~~  237 (250)
                      ...+.. . .+...        ...++++|.++++++++++++.+|++.|.+++.+.+||+|+ +|+++|+||.+|++++
T Consensus       105 ~~~l~~-~-~~~~~--------~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~  174 (330)
T 2v8q_E          105 IYELEE-H-KIETW--------REVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF  174 (330)
T ss_dssp             CCCGGG-C-BHHHH--------HHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHH
T ss_pred             hhHHhh-c-cHHHH--------HHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHH
Confidence            000000 0 00000        01345789999999999999999999999999999999998 8999999999999998


Q ss_pred             HHhh
Q 025613          238 ALQI  241 (250)
Q Consensus       238 l~~~  241 (250)
                      +...
T Consensus       175 ~~~~  178 (330)
T 2v8q_E          175 LKLF  178 (330)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8653

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.63  E-value=3.4e-17  Score=152.30  Aligned_cols=190  Identities=26%  Similarity=0.369  Sum_probs=37.7

Q ss_pred             CeeeeccccccccccCCCCCCCCCCcccccccceecCCC---ChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCC
Q 025613            2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSR---PGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA   77 (250)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   77 (250)
                      |-+++|..+.+.-.+...-....+  ++...+|.+....   ...+....+.+... .+.....++......        
T Consensus        21 dvll~p~~s~~~p~~v~~~~eLt~--~~~l~iP~is~~m~~v~~~~lA~al~~~GglG~i~~~~~~e~~~~~--------   90 (494)
T 1vrd_A           21 DVLLVPQYSEVLPKDVKIDTRLTR--QIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLTPDEQARQ--------   90 (494)
T ss_dssp             GEEECCCCCCCCGGGSCCCEESSS--SCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSCHHHHHHH--------
T ss_pred             cEEeccccccCCCCceEEEehhhC--CCccCceeEecchHHHhHHHHHHHHHHcCCceEEecCCChHHHHHH--------
Confidence            445667777766666555555544  5666777765532   12234444444433 112111111111110        


Q ss_pred             CCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCC
Q 025613           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS  157 (250)
Q Consensus        78 ~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~  157 (250)
                       .....+++++|.+  +++++++++++.++     ++.|.+++++++||+|++|+++|+||.+||+..            
T Consensus        91 -v~~v~~~~~iM~~--~~~~v~~~~tv~ea-----~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~------------  150 (494)
T 1vrd_A           91 -VSIVKKTENGIIY--DPITVTPDMTVKEA-----IDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFE------------  150 (494)
T ss_dssp             -HHHHHTC------------------------------------------------------------------------
T ss_pred             -HHhhhhHhhcCcc--CCeEECCCCCHHHH-----HHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhh------------
Confidence             0112356788998  89999999999999     999999999999999988999999999999852            


Q ss_pred             CCCCcccchhchHHHHHHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHH
Q 025613          158 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV  235 (250)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil  235 (250)
                                          .....++.++|++  +++++++++++.+++++|.+++++.+||||++|+++|+||++|++
T Consensus       151 --------------------~~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll  210 (494)
T 1vrd_A          151 --------------------KNLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIM  210 (494)
T ss_dssp             ------------------------------------------------------------------------------CH
T ss_pred             --------------------cCCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHH
Confidence                                1135689999998  899999999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 025613          236 RAALQI  241 (250)
Q Consensus       236 ~~l~~~  241 (250)
                      +.+...
T Consensus       211 ~~~~~~  216 (494)
T 1vrd_A          211 SVIEHP  216 (494)
T ss_dssp             HHHTCT
T ss_pred             hhhccc
Confidence            987644

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.63  E-value=2.1e-15  Score=140.00  Aligned_cols=118  Identities=28%  Similarity=0.471  Sum_probs=108.5

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEe--CCCcEEEEEehHHHHhhhhccCCCCCCCCCCCC
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  161 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd--~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~  161 (250)
                      .++++|++  ++.++++++++.++     ++.|.++++.++||+|  ++++++|+|+.+||+..                
T Consensus        91 ~~~~im~~--~~~~v~~~~tv~ea-----~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~----------------  147 (491)
T 1zfj_A           91 RSENGVII--DPFFLTPEHKVSEA-----EELMQRYRISGVPIVETLANRKLVGIITNRDMRFI----------------  147 (491)
T ss_dssp             HHTTTTSS--SCCCBCSSSBHHHH-----HHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC----------------
T ss_pred             hHHhcCcC--CCeEECCCCcHHHH-----HHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh----------------
Confidence            46789998  89999999999999     9999999999999999  78999999999999853                


Q ss_pred             cccchhchHHHHHHHhccCCCcccccccC-CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          162 VDSTWKTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                      .....++.++|++ +++++++++++.++++.|.+++.+.+||||++|+++|+||++||++.+.+
T Consensus       148 ----------------~~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          148 ----------------SDYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             ----------------SCSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ----------------ccCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence                            1235789999998 89999999999999999999999999999999999999999999999875

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.63  E-value=1.5e-15  Score=132.79  Aligned_cols=180  Identities=17%  Similarity=0.176  Sum_probs=129.3

Q ss_pred             cccceecCCCChhHHHHHhhhcCC-eeeeeCCCc-----cc-cccccccc-----C----CCCCCCCC------ceeccc
Q 025613           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS-----AV-FASGTLTA-----N----SAAPSSGV------YTVGDF   88 (250)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~-----~~-~~~~~~~~-----~----~~~~~~~~------~~v~~~   88 (250)
                      .++.++..+.++.+++..|.+... .++...+..     .. ..+.....     .    ........      +++.++
T Consensus        40 ~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~  119 (323)
T 3t4n_C           40 YRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGV  119 (323)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC
T ss_pred             CcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCC
Confidence            345678889999999999987776 455544211     00 00000000     0    00000011      123344


Q ss_pred             cccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCc-----EEEEEehHHHHhhhhccCCCCCCCCCCCCcc
Q 025613           89 MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWK-----LVGLVSDYDLLALDSISGSGRADNSMFPEVD  163 (250)
Q Consensus        89 m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~-----~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~  163 (250)
                      |.+  +++++++++++.++     ++.|.+++++++||+|++|.     ++|+||.+|+++++.....            
T Consensus       120 ~~~--~~v~v~~~~~l~~a-----~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~------------  180 (323)
T 3t4n_C          120 DQL--DTASIHPSRPLFEA-----CLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCR------------  180 (323)
T ss_dssp             ------CCCBCTTSBHHHH-----HHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCG------------
T ss_pred             CCC--CceEeCCCCcHHHH-----HHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCC------------
Confidence            566  78999999999999     99999999999999998775     9999999999976432110            


Q ss_pred             cchhchHHHHHHHhccCCCccccc---ccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          164 STWKTFNEVQKLLSKTNGKMVGDL---MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~v~~i---m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                  .......++.++   |.++++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++++..
T Consensus       181 ------------~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  248 (323)
T 3t4n_C          181 ------------ETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG  248 (323)
T ss_dssp             ------------GGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHT
T ss_pred             ------------chhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhh
Confidence                        012345688999   98899999999999999999999999999999988999999999999998765


Q ss_pred             h
Q 025613          241 I  241 (250)
Q Consensus       241 ~  241 (250)
                      .
T Consensus       249 ~  249 (323)
T 3t4n_C          249 G  249 (323)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.62  E-value=5.2e-17  Score=151.30  Aligned_cols=119  Identities=28%  Similarity=0.321  Sum_probs=2.3

Q ss_pred             eccc-cccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC---CcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           85 VGDF-MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        85 v~~~-m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~---g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      ..++ |++  +++++++++++.++     ++.|.+++++++||+|++   |+++|+|+.+||+..    .          
T Consensus        98 ~~e~gM~~--~~~~v~~~~tv~ea-----l~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~----~----------  156 (503)
T 1me8_A           98 NFKAGFVV--SDSNVKPDQTFADV-----LAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID----L----------  156 (503)
T ss_dssp             TTTC----------------------------------------------------------------------------
T ss_pred             hcccCccc--CCeEECCCCcHHHH-----HHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh----h----------
Confidence            3455 888  89999999999999     999999999999999987   899999999999852    0          


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCC--CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                       .....++.++|+++  ++++++++++.+|+++|.+++++.+||||++|+++|+||.+||++.+
T Consensus       157 -----------------~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~  219 (503)
T 1me8_A          157 -----------------TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQ  219 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhh
Confidence                             12356899999987  99999999999999999999999999999999999999999999988


Q ss_pred             Hhh
Q 025613          239 LQI  241 (250)
Q Consensus       239 ~~~  241 (250)
                      ...
T Consensus       220 ~~~  222 (503)
T 1me8_A          220 VCH  222 (503)
T ss_dssp             --C
T ss_pred             hcc
Confidence            654

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.61  E-value=5.6e-17  Score=150.56  Aligned_cols=118  Identities=30%  Similarity=0.409  Sum_probs=3.8

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      .+++++|..  +++++++++++.++     +++|.+++++++||+| +|+++|+||.+||+..                 
T Consensus        88 k~~~~~m~~--~~v~v~~~~tv~ea-----~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~-----------------  142 (490)
T 4avf_A           88 KKHETAIVR--DPVTVTPSTKIIEL-----LQMAREYGFSGFPVVE-QGELVGIVTGRDLRVK-----------------  142 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCccc--CceEeCCCCcHHHH-----HHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhc-----------------
Confidence            357888988  89999999999999     9999999999999999 8899999999999732                 


Q ss_pred             ccchhchHHHHHHHhccCCCccccccc-C-CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMT-P-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                     .....++.++|+ + +++++++++++.+|+++|.+++++.+||||++|+++|+||++||++....
T Consensus       143 ---------------~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~  207 (490)
T 4avf_A          143 ---------------PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTY  207 (490)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             ---------------cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccC
Confidence                           223578999999 4 69999999999999999999999999999999999999999999998643

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.58  E-value=1.1e-14  Score=127.76  Aligned_cols=144  Identities=22%  Similarity=0.295  Sum_probs=106.2

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCC-CcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~-g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      ..+++++|+++.+++++++++++.++     ++.|.+++++++||+|++ |+++|+|+.+|++.++..............
T Consensus        21 ~~~v~dim~~~~~vv~v~~~~tv~~a-----~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~   95 (334)
T 2qrd_G           21 SRTSYDVLPTSFRLIVFDVTLFVKTS-----LSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIA   95 (334)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHH-----HHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGG
T ss_pred             cCchhhhCCCCCCEEEEcCCCCHHHH-----HHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHH
Confidence            46899999987678999999999999     999999999999999986 899999999999976421100000000000


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCC--eEecCCCCHHHHHHHHHHcCCCEEEEEcCCCc-----EEEEEehHH
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVDADGK-----LVGIITRGN  233 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~--~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~-----~vGiIt~~D  233 (250)
                      .+.  ...+......        ++++|.+++  +++.+++++.++++.|.+.+.+++||+|++|.     ++|+||.+|
T Consensus        96 ~~~--~~~~~~i~~~--------l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~d  165 (334)
T 2qrd_G           96 EID--KFRLLGLREV--------ERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYR  165 (334)
T ss_dssp             GGG--SCBHHHHHHH--------HHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHH
T ss_pred             HHh--hhchhhHHHH--------HHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHH
Confidence            000  0001111111        134576667  89999999999999999999999999997654     999999999


Q ss_pred             HHHHHHh
Q 025613          234 VVRAALQ  240 (250)
Q Consensus       234 il~~l~~  240 (250)
                      +++++..
T Consensus       166 l~~~~~~  172 (334)
T 2qrd_G          166 ILKFISM  172 (334)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998865

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.57  E-value=2.2e-16  Score=145.08  Aligned_cols=163  Identities=26%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             ccccccceecCC---CChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCc
Q 025613           28 SFALQLPCLLLS---RPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (250)
Q Consensus        28 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~  103 (250)
                      ++.+.+|.+.+.   -+-.+..-+|.+... -++.+.-++-.+.+.....         .+-+..|..  +++++.|+.|
T Consensus        88 ~i~L~iPlvSA~MDTVTe~~MAIamAr~GGiGvIH~n~sie~Qa~~V~~V---------Kr~e~g~i~--dPvtl~P~~T  156 (556)
T 4af0_A           88 NIVLNTPFLSSPMDTVTEDRMAIALALHGGLGIIHHNCSAEEQAAMVRRV---------KKYENGFIT--DPLCLGPDAT  156 (556)
T ss_dssp             TEEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHH---------HHCCC----------------
T ss_pred             CcEeCCCEEecCcccccCHHHHHHHHHCCCeEEEcCCCCHHHHHHHHHHH---------HhcccCccC--CCeEcCCCCC
Confidence            566777877662   223345555666655 3333333322222211100         012234555  7899999999


Q ss_pred             hhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhccC
Q 025613          104 VDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN  180 (250)
Q Consensus       104 v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (250)
                      +.++     +++|.++++.++||+++   +|+++|+||.+|+..                                 ...
T Consensus       157 v~da-----~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf---------------------------------~d~  198 (556)
T 4af0_A          157 VGDV-----LEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF---------------------------------QDA  198 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHH-----HHHHHHhCCCccccccccCcCCEEEEEEecccccc---------------------------------ccc
Confidence            9999     99999999999999986   589999999999873                                 123


Q ss_pred             CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      ..++.++|++++++++.+.++++|.++|.++++..+||||++|+++|+||++|+++...
T Consensus       199 ~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          199 ETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             -----------------------------------------------------------
T ss_pred             ceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence            57899999999999999999999999999999999999999999999999999988654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.51  E-value=3.8e-16  Score=145.87  Aligned_cols=119  Identities=29%  Similarity=0.460  Sum_probs=71.8

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      +++++|.+  +++++.+++++.++     ++.|.+++++++||+|+   +|+++|+||.+|+.....             
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~ea-----~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~-------------  168 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVGDV-----LEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE-------------  168 (514)
T ss_dssp             TCCTTSCS--SCCCCCC----------------------CEESCC--------CCEECTTTTC-----------------
T ss_pred             hhhhcccc--CCEEECCCCCHHHH-----HHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh-------------
Confidence            57789987  78999999999999     99999999999999997   589999999999975310             


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                       .....++.++|++  +++++++++++.+++++|.+++.+.+||||++|+++|+||++||++.+
T Consensus       169 -----------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          169 -----------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             -----------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             -----------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence                             1235689999998  899999999999999999999999999999999999999999998765


Q ss_pred             H
Q 025613          239 L  239 (250)
Q Consensus       239 ~  239 (250)
                      .
T Consensus       232 ~  232 (514)
T 1jcn_A          232 D  232 (514)
T ss_dssp             C
T ss_pred             h
Confidence            4

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.42  E-value=1.3e-14  Score=134.55  Aligned_cols=113  Identities=36%  Similarity=0.637  Sum_probs=1.5

Q ss_pred             eccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCccc
Q 025613           85 VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS  164 (250)
Q Consensus        85 v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~  164 (250)
                      .++.|..  ++.++.+++++.++     ++.|.++++.++||+|+ ++++|+|+.+||+.                    
T Consensus        95 ~~~~m~~--~~~~v~~~~tv~ea-----~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~--------------------  146 (486)
T 2cu0_A           95 AERLIVE--DVITIAPDETVDFA-----LFLMEKHGIDGLPVVED-EKVVGIITKKDIAA--------------------  146 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhcccc--CceEECCCCCHHHH-----HHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc--------------------
Confidence            4567887  89999999999999     99999999999999997 89999999999973                    


Q ss_pred             chhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          165 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                                    ....++.++|+++++++++++++.+++++|.+++++.+||||++|+++|+||++||++.+.
T Consensus       147 --------------~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          147 --------------REGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             --------------------------------------------------------------------------C
T ss_pred             --------------CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence                          1246799999988999999999999999999999999999999999999999999999864

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.27  E-value=1.9e-11  Score=101.16  Aligned_cols=162  Identities=13%  Similarity=0.071  Sum_probs=83.9

Q ss_pred             CCCCCCCcccccccceecCCCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEe
Q 025613           20 AGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVV   98 (250)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v   98 (250)
                      +|..+...-+...++++..+.++.++...|.+... .++...+..-+.+-  +............+++++|++  +++++
T Consensus        10 ~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Gi--vt~~dl~~~~~~~~v~~im~~--~~~~v   85 (213)
T 1vr9_A           10 HHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGV--VNKEDLLDLDLDSSVFNKVSL--PDFFV   85 (213)
T ss_dssp             ---CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEE--EEGGGGTTSCTTSBSGGGCBC--TTCCE
T ss_pred             ccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEE--EEHHHHHhhcCCCcHHHHccC--CCEEE
Confidence            34444433444557788889999999999987765 55554422111100  000001112235679999998  89999


Q ss_pred             CCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHHHHhc
Q 025613           99 KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK  178 (250)
Q Consensus        99 ~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (250)
                      .+++++.++     ++.|.++++..+||+|++|+++|+||..|+++.....                             
T Consensus        86 ~~~~~l~~a-----~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~-----------------------------  131 (213)
T 1vr9_A           86 HEEDNITHA-----LLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA-----------------------------  131 (213)
T ss_dssp             ETTSBHHHH-----HHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS-----------------------------
T ss_pred             CCCCcHHHH-----HHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH-----------------------------
Confidence            999999999     9999999999999999889999999999999753211                             


Q ss_pred             cCCCcccccccCC-CeEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 025613          179 TNGKMVGDLMTPA-PVVVRETTNLEDAARLLLETKYRRLPVVDAD  222 (250)
Q Consensus       179 ~~~~~v~~im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~  222 (250)
                         ....+.+.+- +.+.....++.++.+.|.+.+++.++|++.+
T Consensus       132 ---~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~  173 (213)
T 1vr9_A          132 ---LAMDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITTR  173 (213)
T ss_dssp             ---CC----------------------------------------
T ss_pred             ---hcCCCCcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEe
Confidence               1112223221 1111334459999999999999999988644

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.22  E-value=1.8e-11  Score=83.70  Aligned_cols=69  Identities=28%  Similarity=0.426  Sum_probs=57.3

Q ss_pred             eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHHHHH
Q 025613           95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK  174 (250)
Q Consensus        95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (250)
                      ++++.+++++.+|     ++.|.+++++++||+| +|+++|+||.+||++.+...+.                       
T Consensus         2 ~vtv~p~~tv~ea-----~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~-----------------------   52 (70)
T 3ghd_A            2 AIVVQPKDTVDRV-----AKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGK-----------------------   52 (70)
T ss_dssp             EEEECTTCBHHHH-----HHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTC-----------------------
T ss_pred             CEEECCCCcHHHH-----HHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCC-----------------------
Confidence            6789999999999     9999999999999998 5899999999999865332221                       


Q ss_pred             HHhccCCCcccccccCCCeEe
Q 025613          175 LLSKTNGKMVGDLMTPAPVVV  195 (250)
Q Consensus       175 ~~~~~~~~~v~~im~~~~~~v  195 (250)
                         .....+++++|+++|++|
T Consensus        53 ---~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A           53 ---NPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             ---CGGGCBGGGTCEECTTCC
T ss_pred             ---CcccCCHHHhcCCCCeEC
Confidence               223568999999988765

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.03  E-value=2.5e-10  Score=90.70  Aligned_cols=60  Identities=37%  Similarity=0.583  Sum_probs=56.0

Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          179 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       179 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                      ....+++++|+++++++.+++++.+|++.|.+++++.+||+|++|+++|+||..||++.+
T Consensus        15 l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~   74 (170)
T 4esy_A           15 IRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGS   74 (170)
T ss_dssp             HHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGT
T ss_pred             HcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHH
Confidence            346899999999999999999999999999999999999999999999999999998653

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.84  E-value=1.5e-08  Score=76.28  Aligned_cols=106  Identities=15%  Similarity=0.153  Sum_probs=77.7

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCC-c--c-cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-S--A-VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~  106 (250)
                      .++.+..+.++.++...|.+... .++...+. .  . ...+... .. ........+++++|.+  ++.++.+++++.+
T Consensus        14 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~-~~-~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~   89 (128)
T 3gby_A           14 DYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLE-GR-KGWPTVKEKLGEELLE--TVRSYRPGEQLFD   89 (128)
T ss_dssp             CSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHT-TC-SSSCCTTCBCCGGGCB--CCCCBCTTSBGGG
T ss_pred             CcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHH-HH-hhCCcccCcHHHHccC--CCcEECCCCCHHH
Confidence            36677889999999999887654 44443331 1  1 1111100 01 1112223679999998  8999999999999


Q ss_pred             ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      +     ++.|.+++...+||+|++|+++|+||..|+++++
T Consensus        90 ~-----~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (128)
T 3gby_A           90 N-----LISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL  124 (128)
T ss_dssp             S-----HHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             H-----HHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence            9     9999999999999999999999999999999764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.83  E-value=1.8e-08  Score=76.11  Aligned_cols=102  Identities=14%  Similarity=0.120  Sum_probs=76.0

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCC-c----c-cccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-S----A-VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-~----~-~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v  104 (250)
                      .+.++..+.++.++...|.+... .++...+. .    . ...+... ..    .....+++++|++   ++++.+++++
T Consensus        16 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~-~~----~~~~~~v~~~m~~---~~~v~~~~~l   87 (129)
T 3jtf_A           16 RMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLR-YM----LEPALDIRSLVRP---AVFIPEVKRL   87 (129)
T ss_dssp             GCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGG-GG----TCTTSCGGGGCBC---CCEEETTCBH
T ss_pred             HeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHh-Hh----ccCCcCHHHHhCC---CeEeCCCCcH
Confidence            35678889999999999987765 55554431 1    1 1111111 11    1245679999965   7899999999


Q ss_pred             hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      .++     ++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus        88 ~~~-----~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l  124 (129)
T 3jtf_A           88 NVL-----LREFRASRNHLAIVIDEHGGISGLVTMEDVLEQI  124 (129)
T ss_dssp             HHH-----HHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHH
T ss_pred             HHH-----HHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            999     9999999999999999889999999999999763

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.82  E-value=8.2e-09  Score=70.31  Aligned_cols=48  Identities=17%  Similarity=0.419  Sum_probs=44.2

Q ss_pred             CeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          192 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       192 ~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      ++++++++++.+|+++|.+++++.+||+| +|+++||||..||++.+..
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~   49 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVA   49 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence            68999999999999999999999999998 6899999999999876543

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.81  E-value=1.3e-08  Score=78.58  Aligned_cols=63  Identities=19%  Similarity=0.343  Sum_probs=57.7

Q ss_pred             cCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHhh
Q 025613          179 TNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       179 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~~l~~~  241 (250)
                      ....+++++|.+  +++++++++++.+|++.|.++++..+||+|++ |+++|+||.+|+++.+.+.
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~   85 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE   85 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence            356889999998  89999999999999999999999999999977 8999999999999987654

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.80  E-value=2.6e-08  Score=74.84  Aligned_cols=102  Identities=20%  Similarity=0.196  Sum_probs=76.7

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCCC-----cc-cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRS-----SA-VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      +.++..+.++.+++..|.+... .++...+.     .. ...+.....   .......+++++|++   +.++++++++.
T Consensus        15 ~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~---~~~~~~~~v~~~m~~---~~~v~~~~~l~   88 (127)
T 3nqr_A           15 MITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM---RSDAEAFSMDKVLRT---AVVVPESKRVD   88 (127)
T ss_dssp             CCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGG---STTCCCCCHHHHCBC---CCEEETTCBHH
T ss_pred             eEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHH---hccCCCCCHHHHcCC---CeEECCCCcHH
Confidence            5678889999999999877655 55554432     11 111211111   112346689999965   67899999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      ++     ++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus        89 ~a-----~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~  123 (127)
T 3nqr_A           89 RM-----LKEFRSQRYHMAIVIDEFGGVSGLVTIEDILEL  123 (127)
T ss_dssp             HH-----HHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             HH-----HHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence            99     999999999999999999999999999999975

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.79  E-value=1.2e-08  Score=85.57  Aligned_cols=62  Identities=19%  Similarity=0.340  Sum_probs=57.8

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                      ...+++++|.++++++++++++.+|+++|.+++++.+||+|++|+++|+||..|+++++.+.
T Consensus         5 ~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~   66 (245)
T 3l2b_A            5 VKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDI   66 (245)
T ss_dssp             CCCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCC
T ss_pred             ccCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence            35789999999999999999999999999999999999999889999999999999998653

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.79  E-value=7.7e-09  Score=76.85  Aligned_cols=58  Identities=34%  Similarity=0.665  Sum_probs=54.6

Q ss_pred             cccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       183 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      +++++|.++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+.+
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~   59 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ   59 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            5788999999999999999999999999999999999989999999999999998765

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.79  E-value=2.7e-08  Score=75.86  Aligned_cols=105  Identities=13%  Similarity=0.087  Sum_probs=78.0

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCC-----c-ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-----S-AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v  104 (250)
                      .+.++..+.++.+++..|.+... .++...+.     . +...+.....  ........+++++|++   ++++++++++
T Consensus        14 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~--~~~~~~~~~v~~~m~~---~~~v~~~~~l   88 (136)
T 3lfr_A           14 QMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLI--LKADGDSDDVKKLLRP---ATFVPESKRL   88 (136)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGG--GSSSGGGCCGGGTCBC---CCEEETTCBH
T ss_pred             HEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHH--HhccCCCcCHHHHcCC---CeEECCCCcH
Confidence            45678889999999999877655 55554432     1 1111211110  0123345689999965   7899999999


Q ss_pred             hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      .++     ++.|.+++++.+||+|++|+++|+||..|+++.+
T Consensus        89 ~~~-----~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l  125 (136)
T 3lfr_A           89 NVL-----LREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQI  125 (136)
T ss_dssp             HHH-----HHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC
T ss_pred             HHH-----HHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            999     9999999999999999999999999999999753

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.78  E-value=1.1e-08  Score=81.25  Aligned_cols=62  Identities=19%  Similarity=0.399  Sum_probs=54.3

Q ss_pred             cCCCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHh
Q 025613          179 TNGKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       179 ~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~~l~~  240 (250)
                      ....+++++|.  ++++++++++++.+|++.|.++++..+||+|++ |+++|+||.+|+++.+.+
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~  103 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIA  103 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHT
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhh
Confidence            34678999998  678999999999999999999999999999977 899999999999998764

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.77  E-value=1.9e-08  Score=77.78  Aligned_cols=60  Identities=23%  Similarity=0.236  Sum_probs=56.3

Q ss_pred             CCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          181 GKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       181 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      ..+++++|.+  +++++.+++++.+|++.|.+++...+||+|++|+++|+||..|+++.+.+
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   88 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT   88 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCS
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhc
Confidence            4689999998  99999999999999999999999999999988999999999999988754

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.76  E-value=2e-08  Score=78.13  Aligned_cols=108  Identities=21%  Similarity=0.254  Sum_probs=79.0

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc---cc-ccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS---AV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~  106 (250)
                      .++++..+.++.+++..|.+... .++...+.-   .. ..+...............+++++|.+  ++.++.+++++.+
T Consensus        22 ~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~   99 (157)
T 4fry_A           22 TIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTA--KVRYVEPSQSTDE   99 (157)
T ss_dssp             CCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBS--SCCCBCTTSBHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCC--CCcEECCCCcHHH
Confidence            35678889999999999877665 444333221   11 11110111111222356789999998  8999999999999


Q ss_pred             ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhh
Q 025613          107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  147 (250)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~  147 (250)
                      +     ++.|.+++++.+||+| +|+++|+|+..||++++.
T Consensus       100 ~-----~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~  134 (157)
T 4fry_A          100 C-----MALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVI  134 (157)
T ss_dssp             H-----HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             H-----HHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            9     9999999999999999 799999999999998754

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.76  E-value=1.3e-08  Score=77.03  Aligned_cols=106  Identities=16%  Similarity=0.063  Sum_probs=78.0

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCC-----c-ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-----S-AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v  104 (250)
                      .+.++..+.++.++...|.+... .++...+.     . +...+...... ........+++++|.   +++++++++++
T Consensus        13 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~-~~~~~~~~~v~~~m~---~~~~v~~~~~l   88 (130)
T 3hf7_A           13 EIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT-EKKEFTKEIMLRAAD---EIYFVPEGTPL   88 (130)
T ss_dssp             GCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHT-SSSCCCHHHHHHHSB---CCCEEETTCBH
T ss_pred             HEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHh-ccCccchhhHHHhcc---CCeEeCCCCcH
Confidence            46678889999999999987765 66655321     1 11111111111 112234457899994   58899999999


Q ss_pred             hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      .++     ++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus        89 ~~~-----~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l  125 (130)
T 3hf7_A           89 STQ-----LVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI  125 (130)
T ss_dssp             HHH-----HHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             HHH-----HHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHH
Confidence            999     9999999999999999999999999999999763

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.74  E-value=2.1e-08  Score=78.61  Aligned_cols=60  Identities=33%  Similarity=0.501  Sum_probs=56.0

Q ss_pred             CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      ..+++++|.++++++.+++++.+|++.|.+.+.+.+||+|++|+++|+||..||++++..
T Consensus         4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~   63 (160)
T 2o16_A            4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES   63 (160)
T ss_dssp             CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHH
Confidence            467999999999999999999999999999999999999988999999999999998764

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.73  E-value=3.5e-08  Score=83.67  Aligned_cols=63  Identities=27%  Similarity=0.342  Sum_probs=57.4

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEehHHHHHHHHhhh
Q 025613          180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~--g~~vGiIt~~Dil~~l~~~~  242 (250)
                      ....+.++|+++++++.+++++.+|.++|.+++++.+||||++  |+++|+||+.||++++....
T Consensus        11 ~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~   75 (250)
T 2d4z_A           11 YNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRI   75 (250)
T ss_dssp             SSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             CCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhh
Confidence            4678999999999999999999999999999999999999963  68999999999999877653

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.73  E-value=2.9e-08  Score=75.88  Aligned_cols=60  Identities=20%  Similarity=0.350  Sum_probs=55.3

Q ss_pred             CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCC--cEEEEEehHHHHHHHHh
Q 025613          181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG--KLVGIITRGNVVRAALQ  240 (250)
Q Consensus       181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g--~~vGiIt~~Dil~~l~~  240 (250)
                      ..+++++|.++++++++++++.+|++.|.+.+.+.+||+|++|  +++|+||..|+++.+.+
T Consensus         4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~   65 (141)
T 2rih_A            4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ   65 (141)
T ss_dssp             -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT
T ss_pred             ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhc
Confidence            4679999999999999999999999999999999999999877  99999999999998754

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.72  E-value=3.1e-08  Score=75.22  Aligned_cols=58  Identities=28%  Similarity=0.482  Sum_probs=54.0

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                      ...+++++|.++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus         5 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~   62 (138)
T 2yzi_A            5 MKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR   62 (138)
T ss_dssp             TTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             hhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Confidence            3578999999999999999999999999999999999999988999999999999853

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.72  E-value=3e-08  Score=76.20  Aligned_cols=108  Identities=22%  Similarity=0.289  Sum_probs=77.3

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCCCc----ccccccccccC-------------CCCCCCCCceeccccccCCc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTAN-------------SAAPSSGVYTVGDFMTTKEE   94 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~~~v~~~m~~~~~   94 (250)
                      ++++..+.++.++...|.+... .++...+..    ...........             .........+++++|.+  +
T Consensus        17 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~   94 (152)
T 4gqw_A           17 LHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGKLVGDLMTP--A   94 (152)
T ss_dssp             CCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CCBHHHHSEE--S
T ss_pred             CeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccccHHHhcCC--C
Confidence            6678889999999999877665 444444321    11110000000             00012345689999998  8


Q ss_pred             eeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhh
Q 025613           95 LHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  147 (250)
Q Consensus        95 ~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~  147 (250)
                      ++++++++++.++     ++.|.+++++.+||+|++|+++|+||..||++.+.
T Consensus        95 ~~~v~~~~~l~~a-----~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           95 PLVVEEKTNLEDA-----AKILLETKYRRLPVVDSDGKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             CCCEESSSBHHHH-----HHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ceEECCCCcHHHH-----HHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence            8999999999999     99999999999999998999999999999998643

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.71  E-value=4.8e-08  Score=76.39  Aligned_cols=61  Identities=33%  Similarity=0.476  Sum_probs=55.7

Q ss_pred             ccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          178 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       178 ~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      .....+++++|.+ ++++.+++++.+|++.|.+.+...+||+|++|+++|+||..||++.+.
T Consensus        13 ~l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~   73 (159)
T 3fv6_A           13 KLKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASI   73 (159)
T ss_dssp             HHTTCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHT
T ss_pred             HHhhCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhh
Confidence            3456789999987 679999999999999999999999999998899999999999999873

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.70  E-value=4.8e-08  Score=73.69  Aligned_cols=60  Identities=30%  Similarity=0.422  Sum_probs=55.4

Q ss_pred             CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                      ..+++++|.++++++++++++.+|++.|.+.+.+.+||+| +|+++|+||..|+++.+.+.
T Consensus         3 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~   62 (133)
T 2ef7_A            3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKG   62 (133)
T ss_dssp             CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred             cccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcC
Confidence            4679999999999999999999999999999999999999 89999999999999877643

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.70  E-value=3.7e-08  Score=74.74  Aligned_cols=60  Identities=25%  Similarity=0.418  Sum_probs=55.2

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHH-HHHHH
Q 025613          180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV-VRAAL  239 (250)
Q Consensus       180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Di-l~~l~  239 (250)
                      ...+++++|.++++++++++++.+|++.|.+.+.+.+||+|++|+++|+||.+|+ ++.+.
T Consensus         6 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   66 (138)
T 2p9m_A            6 KNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIR   66 (138)
T ss_dssp             TTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTT
T ss_pred             ccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            3578999999999999999999999999999999999999988999999999999 87654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.69  E-value=3.2e-08  Score=73.66  Aligned_cols=57  Identities=32%  Similarity=0.353  Sum_probs=53.0

Q ss_pred             cccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       183 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      +++++|.++++++++++++.+|++.|.+.+.+.+||+| +|+++|+||..|+++.+.+
T Consensus         2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~   58 (125)
T 1pbj_A            2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAE   58 (125)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhc
Confidence            46789999999999999999999999999999999999 8999999999999987654

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.68  E-value=2.4e-08  Score=78.37  Aligned_cols=60  Identities=27%  Similarity=0.432  Sum_probs=53.8

Q ss_pred             CcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          182 KMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       182 ~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                      ..+.++|.+  ++.++.+++++.+|+++|.++++..+||+|++|+++|+||.+|+++++...
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~   76 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEH   76 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHH
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhc
Confidence            467889974  789999999999999999999999999999889999999999999987654

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.65  E-value=3.4e-08  Score=77.07  Aligned_cols=62  Identities=27%  Similarity=0.386  Sum_probs=56.7

Q ss_pred             cCCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          179 TNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       179 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      ....++.++|.+  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||..||++.+.+
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~   74 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG   74 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBC
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhh
Confidence            346789999988  89999999999999999999999999999988999999999999987643

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.65  E-value=2.3e-08  Score=75.45  Aligned_cols=61  Identities=18%  Similarity=0.238  Sum_probs=53.4

Q ss_pred             CCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHhh
Q 025613          181 GKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       181 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~~l~~~  241 (250)
                      ..+++++|.+  .++++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|+++++.+.
T Consensus         5 ~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~   68 (130)
T 3i8n_A            5 DVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSG   68 (130)
T ss_dssp             --CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTT
T ss_pred             cCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcC
Confidence            5789999985  45689999999999999999999999999977 8999999999999987643

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.65  E-value=1e-07  Score=78.24  Aligned_cols=106  Identities=16%  Similarity=0.151  Sum_probs=76.5

Q ss_pred             ccceecCCCChhHHHHHhhhc---CC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           32 QLPCLLLSRPGCRVFSVLATS---SD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      .+.++..+.++.+++..+.+.   .. .++......-+.+-  +............+++++|++  +++++++++++.++
T Consensus        63 ~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGi--vt~~dll~~~~~~~v~~im~~--~~~~v~~~~~l~~a  138 (205)
T 3kxr_A           63 QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGT--VRRYDIFKHEPHEPLISLLSE--DSRALTANTTLLDA  138 (205)
T ss_dssp             CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEE--EEHHHHTTSCTTSBGGGGCCS--SCCCEETTSCHHHH
T ss_pred             ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEE--EEHHHHHhCCCcchHHHHhcC--CCeEECCCCCHHHH
Confidence            467888899999999988763   22 23222221110000  000000112345689999988  89999999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                           ++.|.++++..+||+|++|+++|+||..|++..+
T Consensus       139 -----~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i  172 (205)
T 3kxr_A          139 -----AEAIEHSREIELPVIDDAGELIGRVTLRAATALV  172 (205)
T ss_dssp             -----HHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             -----HHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence                 9999999999999999999999999999999764

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.64  E-value=2.9e-08  Score=76.58  Aligned_cols=60  Identities=30%  Similarity=0.416  Sum_probs=55.3

Q ss_pred             CCCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          180 NGKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       180 ~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      ...+++++|.  .+++++++++++.+|++.|.++++..+||+|++|+++|+||..||++.+.
T Consensus        13 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~   74 (150)
T 3lqn_A           13 QQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGIL   74 (150)
T ss_dssp             HHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTB
T ss_pred             hcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence            3578999998  45899999999999999999999999999998999999999999998874

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.64  E-value=4e-08  Score=76.27  Aligned_cols=60  Identities=28%  Similarity=0.377  Sum_probs=55.2

Q ss_pred             CCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          180 NGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       180 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      ...+++++|.+  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++.+.
T Consensus         9 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~   70 (157)
T 2emq_A            9 MQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAIL   70 (157)
T ss_dssp             -CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSB
T ss_pred             hhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence            46789999986  8999999999999999999999999999998899999999999998764

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.63  E-value=4.3e-08  Score=77.69  Aligned_cols=108  Identities=21%  Similarity=0.262  Sum_probs=78.1

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCcc----c-cccccccc-CCCC-------------------------CC
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSA----V-FASGTLTA-NSAA-------------------------PS   79 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~----~-~~~~~~~~-~~~~-------------------------~~   79 (250)
                      .++++..+.++.+++..|.+... .++...+..-    . ..+..... ....                         ..
T Consensus        15 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (180)
T 3sl7_A           15 NLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISK   94 (180)
T ss_dssp             GCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCSHHHHHHHHHT
T ss_pred             CceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhhhHHHHHHHhc
Confidence            36678889999999999877654 4554442211    1 11110000 0000                         02


Q ss_pred             CCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613           80 SGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus        80 ~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      ....+++++|++  +++++++++++.++     ++.|.+++++.+||+|++|+++|+||..||++.+
T Consensus        95 ~~~~~v~~~m~~--~~~~v~~~~~l~~a-----~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           95 TYGKVVGDLMTP--SPLVVRDSTNLEDA-----ARLLLETKFRRLPVVDADGKLIGILTRGNVVRAA  154 (180)
T ss_dssp             TTTCBHHHHSEE--SCCCEETTSBHHHH-----HHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             cccccHHHHhCC--CceEeCCCCcHHHH-----HHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHH
Confidence            245689999998  88999999999999     9999999999999999999999999999999864

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.63  E-value=4e-08  Score=77.30  Aligned_cols=64  Identities=30%  Similarity=0.382  Sum_probs=58.3

Q ss_pred             ccCCCcccccccC---CCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          178 KTNGKMVGDLMTP---APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       178 ~~~~~~v~~im~~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                      .....+++++|.+   +++++.+++++.+|++.|.+.+...+||+|++|+++|+||..||++++.+.
T Consensus        20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~   86 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQ   86 (165)
T ss_dssp             SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhc
Confidence            3456889999985   699999999999999999999999999999889999999999999987764

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.63  E-value=8e-08  Score=74.97  Aligned_cols=100  Identities=14%  Similarity=0.086  Sum_probs=75.1

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc------ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v  104 (250)
                      .+.++..+.++.++...|.+... .++...+..      +...+... ..  ... ...+++++|++   ++++++++++
T Consensus        49 ~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~-~~--~~~-~~~~v~~im~~---~~~v~~~~~l  121 (156)
T 3oi8_A           49 RMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLK-YM--FNP-EQFHLKSILRP---AVFVPEGKSL  121 (156)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGG-GS--SCG-GGCCHHHHCBC---CCEEETTSBH
T ss_pred             HeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH-HH--HcC-CcccHHHHcCC---CEEECCCCCH
Confidence            46678889999999999987655 555544321      11112111 10  011 45689999965   7899999999


Q ss_pred             hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHH
Q 025613          105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  143 (250)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~  143 (250)
                      .++     ++.|.+++.+.+||+|++|+++|+||..|++
T Consensus       122 ~~a-----~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          122 TAL-----LKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             HHH-----HHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             HHH-----HHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            999     9999999999999999999999999999986

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.63  E-value=6e-08  Score=75.64  Aligned_cols=61  Identities=25%  Similarity=0.397  Sum_probs=56.1

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC--CCcEEEEEehHHHHHHHHh
Q 025613          180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA--DGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~--~g~~vGiIt~~Dil~~l~~  240 (250)
                      ...+++++|.++++++++++++.+|++.|.+++.+.+||+|+  +|+++|+||..|+++.+..
T Consensus        11 ~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~   73 (164)
T 2pfi_A           11 HHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQA   73 (164)
T ss_dssp             CSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC
T ss_pred             cCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHh
Confidence            467899999999999999999999999999999999999996  6899999999999987743

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.62  E-value=9.3e-08  Score=72.80  Aligned_cols=60  Identities=18%  Similarity=0.301  Sum_probs=54.5

Q ss_pred             CCcccc---cccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          181 GKMVGD---LMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       181 ~~~v~~---im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      ..++++   +|.++++++++++++.+|++.|.+.+.+.+||+|++|+++|+||..|+++.+.+
T Consensus         7 ~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   69 (144)
T 2nyc_A            7 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG   69 (144)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             hcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcc
Confidence            456677   888889999999999999999999999999999988999999999999987654

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.61  E-value=8.3e-08  Score=72.61  Aligned_cols=107  Identities=17%  Similarity=0.186  Sum_probs=77.5

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeee-CCCc--cc-ccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSAL-RRSS--AV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~-~~~~--~~-~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~  106 (250)
                      .++++..+.++.++...+.+... .++.. .+.+  .. ..+...............+++++|.+  ++.++++++++.+
T Consensus        18 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~   95 (135)
T 2rc3_A           18 TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNED   95 (135)
T ss_dssp             CCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHHH
T ss_pred             CcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccC--CCeEECCCCcHHH
Confidence            46678889999999998876654 34333 2221  11 11111001101123456789999998  8999999999999


Q ss_pred             ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      +     ++.|.+++++.+||+| +|+++|+||..|+++++
T Consensus        96 ~-----~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~  129 (135)
T 2rc3_A           96 C-----MALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  129 (135)
T ss_dssp             H-----HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             H-----HHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHH
Confidence            9     9999999999999999 79999999999999764

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.59  E-value=1.7e-07  Score=74.67  Aligned_cols=62  Identities=16%  Similarity=0.193  Sum_probs=56.0

Q ss_pred             cCCCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHHHHHHHh
Q 025613          179 TNGKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       179 ~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~~vGiIt~~Dil~~l~~  240 (250)
                      ....+++++|+  ++++++++++++.+|++.|.++++..+||++++ |+++|+||.+||+.++.+
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~   97 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLIT   97 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHH
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhc
Confidence            45788999996  468899999999999999999999999999976 899999999999998754

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.59  E-value=1.1e-07  Score=76.17  Aligned_cols=59  Identities=22%  Similarity=0.297  Sum_probs=55.4

Q ss_pred             CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      ..+++++|.++++++.+++++.+|+++|.+++.+.+||+|++|+++|+||.+||++.+.
T Consensus         8 ~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~   66 (184)
T 1pvm_A            8 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI   66 (184)
T ss_dssp             CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred             ccCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Confidence            47899999999999999999999999999999999999998899999999999998765

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.58  E-value=7.8e-07  Score=82.76  Aligned_cols=103  Identities=19%  Similarity=0.158  Sum_probs=79.5

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCC--Cc-----ccccccccccCCCCCCCCCceeccccccCCceeEeCCCCc
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--SS-----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~  103 (250)
                      .+.++..+.++.++...+.++.. .++...+  ..     +...+.    .  .......+++++|++ .++++++++++
T Consensus       122 d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl----~--~~~~~~~~V~~vM~~-~~~vtv~~~~~  194 (511)
T 3usb_A          122 DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM----R--FIQDYSIKISDVMTK-EQLITAPVGTT  194 (511)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHH----T--TCCCSSSBHHHHCCC-CCCCCEETTCC
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHh----h--hhccCCCcHHHhccc-CCCEEECCCCC
Confidence            45678889999999999988776 5665553  11     111111    0  112345689999985 36899999999


Q ss_pred             hhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          104 VDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       104 v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      +.++     ++.|.++++..+||+|++|+++|+||.+|+++..
T Consensus       195 l~ea-----l~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~  232 (511)
T 3usb_A          195 LSEA-----EKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI  232 (511)
T ss_dssp             HHHH-----HHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HHHH-----HHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhh
Confidence            9999     9999999999999999999999999999999763

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.57  E-value=9.6e-08  Score=71.99  Aligned_cols=106  Identities=15%  Similarity=0.246  Sum_probs=76.6

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeC--CCc--ccc-cccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR--RSS--AVF-ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~--~~~-~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      .++++..+.++.++...+.+... .++...  +..  ... .+...............+++++|.+  +++++++++++.
T Consensus        17 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~   94 (133)
T 1y5h_A           17 GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD--SIYYVDANASIQ   94 (133)
T ss_dssp             TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETTCCHH
T ss_pred             CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcC--CCEEECCCCCHH
Confidence            35677888999999998876554 444442  211  111 1110001101122345789999988  899999999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      ++     ++.|.+++.+.+||+|+ |+++|+||..|+++.
T Consensus        95 ~~-----~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~  128 (133)
T 1y5h_A           95 EM-----LNVMEEHQVRRVPVISE-HRLVGIVTEADIARH  128 (133)
T ss_dssp             HH-----HHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHT
T ss_pred             HH-----HHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            99     99999999999999997 899999999999975

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.55  E-value=6.5e-08  Score=75.14  Aligned_cols=62  Identities=34%  Similarity=0.475  Sum_probs=55.6

Q ss_pred             CCCcccccccC--CCeEecCCCCHHHHHHHHHHcCCCEEEEE-cC-CCcEEEEEehHHHHHHHHhh
Q 025613          180 NGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVV-DA-DGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       180 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVV-d~-~g~~vGiIt~~Dil~~l~~~  241 (250)
                      ...+++++|.+  +++++++++++.+|++.|.+++++.+||+ ++ +|+++|+||.+|+++.+...
T Consensus        18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~   83 (153)
T 3oco_A           18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID   83 (153)
T ss_dssp             HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH
T ss_pred             CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC
Confidence            35789999986  89999999999999999999999999999 64 48999999999999987654

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.53  E-value=1.8e-07  Score=72.79  Aligned_cols=60  Identities=30%  Similarity=0.389  Sum_probs=55.1

Q ss_pred             cCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCE-EEEEcCCCcEEEEEehHHHHHHHH
Q 025613          179 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR-LPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       179 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~-lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      ....+++++|.++++++++++++.+|++.|.+.+.+. +||+|++ +++|+||..||++++.
T Consensus        13 ~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~   73 (157)
T 1o50_A           13 MKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSG   73 (157)
T ss_dssp             CBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHH
T ss_pred             hccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHh
Confidence            3456799999999999999999999999999999999 9999976 9999999999998765

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.51  E-value=1.7e-07  Score=74.60  Aligned_cols=62  Identities=26%  Similarity=0.502  Sum_probs=56.3

Q ss_pred             CCCcccccccCC----CeEe--cCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEehHHHHHHHHhh
Q 025613          180 NGKMVGDLMTPA----PVVV--RETTNLEDAARLLLETKYRRLPVV--DADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       180 ~~~~v~~im~~~----~~~v--~~~~~l~~a~~~m~~~~~~~lpVV--d~~g~~vGiIt~~Dil~~l~~~  241 (250)
                      ...+++++|.+.    ++++  .+++++.+|++.|.+.+.+.+||+  |++|+++|+||..|+++.+...
T Consensus         9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~   78 (185)
T 2j9l_A            9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENA   78 (185)
T ss_dssp             CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence            467899999887    7888  999999999999999999999999  7789999999999999987653

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.48  E-value=3.9e-08  Score=91.39  Aligned_cols=104  Identities=20%  Similarity=0.198  Sum_probs=0.0

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCC--------cccccccccccCCCCCCCCCceeccccccCCceeEeCCCC
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS--------SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT  102 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~  102 (250)
                      .+.++..+.++.++...|.++.. .++...+.        .+...+...     .......+++++|++..+++++++++
T Consensus       106 ~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~-----~~~~~~~~V~diM~~~~~~~tv~~~~  180 (503)
T 1me8_A          106 SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPI-----DLTQTETKVSDMMTPFSKLVTAHQDT  180 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHh-----hhccccCcHHHHhCCCCCCEEEcCCC
Confidence            45566677778887777766554 33333221        011111100     01224567999999832399999999


Q ss_pred             chhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          103 TVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       103 ~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      ++.++     ++.|.++++..+||+|++|+++|+||.+||++.
T Consensus       181 sl~ea-----~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~  218 (503)
T 1me8_A          181 KLSEA-----NKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRS  218 (503)
T ss_dssp             -------------------------------------------
T ss_pred             cHHHH-----HHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHh
Confidence            99999     999999999999999999999999999999975

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.44  E-value=4.5e-07  Score=78.13  Aligned_cols=106  Identities=12%  Similarity=0.190  Sum_probs=77.5

Q ss_pred             ccceecCCCChhHHHHHhhhcC-----C-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           32 QLPCLLLSRPGCRVFSVLATSS-----D-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      .+.++..+.+..++...+.++.     . .++...+..-..+-  +............+++++|.+  +++++++++++.
T Consensus       146 ~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGi--vt~~dll~~~~~~~v~~im~~--~~~~v~~~~~l~  221 (286)
T 2oux_A          146 EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGV--ISLRDLIVNDDDTLIADILNE--RVISVHVGDDQE  221 (286)
T ss_dssp             CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEE--EEHHHHTTSCTTSBHHHHSBS--CCCCEETTSBHH
T ss_pred             CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEE--EEHHHHHcCCCCCcHHHHcCC--CCeeecCCCCHH
Confidence            4677888999999999988762     1 33433321111110  000000112345689999988  899999999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      ++     ++.|.+++...+||+|++|+++|+||..|++..+
T Consensus       222 ea-----~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i  257 (286)
T 2oux_A          222 DV-----AQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI  257 (286)
T ss_dssp             HH-----HHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HH-----HHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            99     9999999999999999999999999999999763

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.41  E-value=4.7e-07  Score=77.50  Aligned_cols=106  Identities=17%  Similarity=0.237  Sum_probs=76.6

Q ss_pred             ccceecCCCChhHHHHHhhhcC------CeeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           32 QLPCLLLSRPGCRVFSVLATSS------DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      .+.++..+.+..++...+.++.      ..++...+..-..+-  +............+++++|.+  +++++++++++.
T Consensus       144 ~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGi--vt~~dll~~~~~~~v~~im~~--~~~~v~~~~~l~  219 (278)
T 2yvy_A          144 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGV--LSLRDLIVADPRTRVAEIMNP--KVVYVRTDTDQE  219 (278)
T ss_dssp             CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEE--EEHHHHHHSCTTCBSTTTSBS--SCCCEETTSBHH
T ss_pred             CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEE--EEHHHHhcCCCCCcHHHHhCC--CCeEEeCCCCHH
Confidence            4667888999999999887752      233333321111100  000000001245689999987  799999999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      ++     ++.|.+++...+||+|++|+++|+||..|++..+
T Consensus       220 ~a-----~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i  255 (278)
T 2yvy_A          220 EV-----ARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  255 (278)
T ss_dssp             HH-----HHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC
T ss_pred             HH-----HHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            99     9999999999999999999999999999999763

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.37  E-value=5.7e-07  Score=83.96  Aligned_cols=61  Identities=25%  Similarity=0.550  Sum_probs=57.1

Q ss_pred             CCcccccccCCCeEecCC-CCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHHHHHHHhh
Q 025613          181 GKMVGDLMTPAPVVVRET-TNLEDAARLLLETKYRRLPVVD-ADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       181 ~~~v~~im~~~~~~v~~~-~~l~~a~~~m~~~~~~~lpVVd-~~g~~vGiIt~~Dil~~l~~~  241 (250)
                      ..++.++|.++++++.++ +++.+|+++|.+++++.+||+| ++|+++|+||.+||++.+...
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~  445 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM  445 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc
Confidence            578999999999999999 9999999999999999999999 789999999999999988753

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.16  E-value=2.5e-06  Score=78.66  Aligned_cols=106  Identities=17%  Similarity=0.237  Sum_probs=77.0

Q ss_pred             ccceecCCCChhHHHHHhhhcC------CeeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           32 QLPCLLLSRPGCRVFSVLATSS------DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      .+.++..+.+..++...+.++.      ..++...+..-..+-  +............+++++|++  +++++++++++.
T Consensus       164 ~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGi--Vt~~Dll~~~~~~~v~dim~~--~~~~v~~~~~l~  239 (473)
T 2zy9_A          164 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGV--LSLRDLIVADPRTRVAEIMNP--KVVYVRTDTDQE  239 (473)
T ss_dssp             CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEE--EEHHHHHHSCTTSBGGGTSBS--SCCCEESSSBHH
T ss_pred             CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEE--EEHHHHhcCCCCCcHHHHhCC--CCeEEeCCCcHH
Confidence            5677888999999999988752      233333321110000  000000001245689999987  899999999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      ++     ++.|.+++...+||+|++|+++|+||.+|+++..
T Consensus       240 ea-----~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i  275 (473)
T 2zy9_A          240 EV-----ARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  275 (473)
T ss_dssp             HH-----HHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HH-----HHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHH
Confidence            99     9999999999999999999999999999999763

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.09  E-value=4.5e-06  Score=79.61  Aligned_cols=54  Identities=20%  Similarity=0.050  Sum_probs=49.2

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      +++++|++  ++.++++++++.++     ++.|.+++++.+||+ ++|+++|+||.+|+++.
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~ea-----~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~  622 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVRQL-----HFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYG  622 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHHHH-----HHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEEC
T ss_pred             ccchhhcC--CCceecCCCcHHHH-----HHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHH
Confidence            37889999  89999999999999     999999999999999 68999999999999865

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.04  E-value=1.1e-05  Score=74.79  Aligned_cols=104  Identities=17%  Similarity=0.166  Sum_probs=68.3

Q ss_pred             cccceecCCCChhHHHHHhhhcCC-eeeeeCCCcc-----cccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSA-----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (250)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v  104 (250)
                      ..+.++..+.++.++...|.++.. .++...+..-     ...+.    .  .......+++++|+++++++++++++++
T Consensus        97 ~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL----~--~~~~~~~~v~diM~p~~~~vtv~~~~~l  170 (496)
T 4fxs_A           97 THPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV----R--FVTDLTKSVAAVMTPKERLATVKEGATG  170 (496)
T ss_dssp             BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHH----T--TCCCTTSBGGGTSEEGGGCCEEECC---
T ss_pred             cCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHH----h--hcccCCCcHHHHhcCCCCCEEECCCCCH
Confidence            445678889999999999988776 5555543211     11111    0  1122456899999943348999999999


Q ss_pred             hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      .++     +++|.++++..+||+|++|+++|+||.+|+++.
T Consensus       171 ~ea-----~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          171 AEV-----QEKMHKARVEKILVVNDEFQLKGMITAKDFHKA  206 (496)
T ss_dssp             -CG-----GGTCC---CCCEEEECTTSBCCEEECCC-----
T ss_pred             HHH-----HHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHh
Confidence            999     999999999999999999999999999999975

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.04  E-value=2e-06  Score=79.54  Aligned_cols=58  Identities=41%  Similarity=0.591  Sum_probs=0.0

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      ...+++++|++  +++++++++++.++     ++.|.++++..+||+|++|+++|+||.+||++.
T Consensus       148 ~~~~v~~im~~--~~~~v~~~~~l~ea-----l~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~  205 (486)
T 2cu0_A          148 EGKLVKELMTK--EVITVPESIEVEEA-----LKIMIENRIDRLPVVDERGKLVGLITMSDLVAR  205 (486)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             CCCCHHHHccC--CCeEECCcCcHHHH-----HHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHh
Confidence            34578899997  78999999999999     999999999999999999999999999999975

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.00  E-value=1.1e-05  Score=74.58  Aligned_cols=102  Identities=20%  Similarity=0.168  Sum_probs=0.0

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCCC----cccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRS----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a  107 (250)
                      +.++..+.++.++...+.++.. .++...+.    .+...+..      .......+++++|+++.+++++++++++.++
T Consensus        98 ~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~------~~~~~~~~V~~vMtp~~~~vtv~~~~~l~ea  171 (490)
T 4avf_A           98 PVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLR------VKPNAGDTVAAIMTPKDKLVTAREGTPLEEM  171 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhh------hccccCCcHHHHhccCCCCEEECCCCcHHHH
Confidence            4456667777777777766554 33332211    01111110      0122356799999943348999999999999


Q ss_pred             cchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          108 FVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                           +++|.++++..+||+|++|+++|+||..|+++.
T Consensus       172 -----~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~  204 (490)
T 4avf_A          172 -----KAKLYENRIEKMLVVDENFYLRGLVTFRDIEKA  204 (490)
T ss_dssp             --------------------------------------
T ss_pred             -----HHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhh
Confidence                 999999999999999999999999999999975

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.90  E-value=1.6e-06  Score=80.05  Aligned_cols=58  Identities=29%  Similarity=0.385  Sum_probs=0.0

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      ...+++++|++  ++++++++.++++|     .++|.++++..+||||++|+++|+||.+|+.+.
T Consensus       198 ~~~~V~evMT~--~lvt~~~~~~leeA-----~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          198 AETPIKSVMTT--EVVTGSSPITLEKA-----NSLLRETKKGKLPIVDSNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             cceEhhhhccc--ceEEecCCCCHHHH-----HHHHHHccccceeEEccCCcEEEEEEechhhhh
Confidence            34589999998  89999999999999     999999999999999999999999999999864

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.87  E-value=2.1e-05  Score=72.79  Aligned_cols=104  Identities=21%  Similarity=0.277  Sum_probs=3.9

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCC-----cccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      .++++..+.++.++...|.++.. .++...+.     .+...+...      ......+++++|++..+++++++++++.
T Consensus       104 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~------~~~~~~~v~~im~~~~~~~~v~~~~~l~  177 (494)
T 1vrd_A          104 DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF------EKNLSKKIKDLMTPREKLIVAPPDISLE  177 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh------hcCCCCcHHHHhCCCCCCeEECCCCCHH
Confidence            34556667777777776665543 22222211     001111000      0113457899998644688999999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      ++     ++.|.++++..+||+|++|+++|+|+..|+++..
T Consensus       178 ea-----~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  213 (494)
T 1vrd_A          178 KA-----KEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI  213 (494)
T ss_dssp             ------------------------------------CHHHH
T ss_pred             HH-----HHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhh
Confidence            99     9999999999999999999999999999999864

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.77  E-value=2.1e-05  Score=73.12  Aligned_cols=105  Identities=20%  Similarity=0.162  Sum_probs=48.5

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCC-----C--cc-cccccccccCCCCCCCCCceeccccccCCceeEeCCCCc
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR-----S--SA-VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT  103 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-----~--~~-~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~  103 (250)
                      +..+..+.++.++...|.++.. .++...+     .  .. ...+...    ........+++++|++..+++++.++++
T Consensus       118 ~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~----~~~~~~~~~v~~vm~~~~~~~tv~~~~~  193 (514)
T 1jcn_A          118 PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDF----LAEKDHTTLLSEVMTPRIELVVAPAGVT  193 (514)
T ss_dssp             CCCCCC-----------------CEESCC--------CCEECTTTTC--------------------CCBCCCCEETTCC
T ss_pred             CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHh----hhhccCCCCHHHHhCCCCCCeEECCCCC
Confidence            4456667777777777765544 3333221     0  01 1111000    0001245678999986446889999999


Q ss_pred             hhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          104 VDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       104 v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      +.++     ++.|.++++..+||+|++|+++|+||..|+++..
T Consensus       194 l~ea-----~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          194 LKEA-----NEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             STTT-----TTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             HHHH-----HHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence            9999     9999999999999999999999999999999753

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.57  E-value=0.00011  Score=67.81  Aligned_cols=53  Identities=25%  Similarity=0.399  Sum_probs=49.8

Q ss_pred             ccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEehHHHHH
Q 025613          184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD--ADGKLVGIITRGNVVR  236 (250)
Q Consensus       184 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd--~~g~~vGiIt~~Dil~  236 (250)
                      +.++|.++++++++++++.++++.|.+.++..+||+|  ++++++|+||.+|++.
T Consensus        92 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~  146 (491)
T 1zfj_A           92 SENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF  146 (491)
T ss_dssp             HTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             HHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhh
Confidence            4679999999999999999999999999999999999  7899999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	250
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	5e-21
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-19
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	2e-19
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	0.001
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	1e-18
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	4e-18
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-07
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	6e-18
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	7e-18
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	2e-17
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	3e-16
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	0.003
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	3e-15
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	6e-15
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	3e-06
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	1e-14
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	1e-14
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	1e-14
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	3e-06
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	4e-14
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	0.001
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	1e-13
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	9e-06
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	3e-04
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	2e-13
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-06
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	2e-13
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	5e-13
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	3e-06
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	1e-12
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	2e-12
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	7e-05
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	3e-12
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	9e-12
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-11
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	1e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-04
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	5e-11
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	0.002
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	5e-10
d1lkvx_	213	a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId:	1e-05

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 84.3 bits (207), Expect = 5e-21
 Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 10/159 (6%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            +  +      + +V   T +  A     L+ L+       PV+D +  LVG+V + DLL
Sbjct: 5   EIEPYYQR--YVSIVWEGTPLKAA-----LKALLLSNSMALPVVDSEGNLVGIVDETDLL 57

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNE---VQKLLSKTNGKMVGDLMTPAPVVVRETTN 200
               I    ++        +      +     +K   +   K V ++MT   +V      
Sbjct: 58  RDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMT 117

Query: 201 LEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239
           + + A  + +    +LPV+  +G L+G+I   ++++  +
Sbjct: 118 VHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 1e-19
 Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 7/162 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVI--DDDWKLVGLVSDYD 141
              D M  +    ++    T D   V     I+ E   +GFPV+   +  +LVG V   D
Sbjct: 4   LAMDVMKPRRNDPLL-TVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRD 62

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNL 201
           L+     +   +        +  T  +               + +++  +P  V + T +
Sbjct: 63  LIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLK---LRNILDLSPFTVTDLTPM 119

Query: 202 EDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
           E    +  +   R+  V   +G+L+GIIT+ +V++   Q+ +
Sbjct: 120 EIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMAN 160

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.3 bits (197), Expect = 2e-19
 Identities = 27/156 (17%), Positives = 48/156 (30%), Gaps = 19/156 (12%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFP-VIDDDWKLVGLVSDYDL 142
              D + T  +L V   +  V +A        LV   +   P         VG+++  D 
Sbjct: 14  RCYDLIPTSSKLVVFDTSLQVKKA-----FFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68

Query: 143 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 202
           + +               E                     +         V +    +L 
Sbjct: 69  INILHRYYKSALVQIYELEEHKIETWRE------------VYLQDSFKPLVCISPNASLF 116

Query: 203 DAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRA 237
           DA   L+  K  RLPV+D + G  + I+T   +++ 
Sbjct: 117 DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF 152

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 182 KMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAA 238
               DL+  +   VV   +  ++ A   L+    R  P+ D+     VG++T  + +   
Sbjct: 13  HRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINIL 72

Query: 239 LQ 240
            +
Sbjct: 73  HR 74

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 77.7 bits (190), Expect = 1e-18
 Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 20/156 (12%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYD 141
           V  V   ++ K    VV+  T ++E      ++ ++E  +T    +  D KLVG++    
Sbjct: 3   VKDVCKLISLK--PTVVEEDTPIEEI-----VDRILEDPVTRTVYVARDNKLVGMIPVMH 55

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNL 201
           LL                            ++  + +   K   ++M   PV V   T L
Sbjct: 56  LL------------KVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLD-PVYVHMDTPL 102

Query: 202 EDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           E+A +L+++   + +PVVD  G++VG +    ++ A
Sbjct: 103 EEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLA 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.4 bits (187), Expect = 4e-18
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 26/156 (16%)

Query: 83  YTVGDF-MTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYD 141
             +GD  + T++ +   + TT V +      +++L + R++  P+ID++  L+ +   YD
Sbjct: 6   IPIGDLNIITQDNMKSCQMTTPVIDV-----IQMLTQGRVSSVPIIDENGYLINVYEAYD 60

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNL 201
           +L L           S+   +                                  +   L
Sbjct: 61  VLGLIKGGIYNDLSLSVGEALMRRSD--------------------DFEGVYTCTKNDKL 100

Query: 202 EDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
                 + + +  R  VVD  G+LVG++T  ++++ 
Sbjct: 101 STIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKY 136

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 175 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV 234
            L    G  +  +        + TT + D  ++L + +   +P++D +G L+ +    +V
Sbjct: 3   FLKIPIGD-LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 61

Query: 235 VRAALQ 240
           +     
Sbjct: 62  LGLIKG 67

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 76.2 bits (186), Expect = 6e-18
 Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 8/154 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            VGD M    ++  +  T+T  +      L +L + ++  FP +D       L S     
Sbjct: 12  QVGDIMVR--DVTSIASTSTYGDL-----LHVLRQTKLKFFPFVDTPDTNTLLGSIDRTE 64

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
               +     A      E   T +     ++             +  +P  + E T+L+ 
Sbjct: 65  VEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQK 124

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
              L       R  V    GKLVG++    +  A
Sbjct: 125 THTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAA 157

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 75.3 bits (184), Expect = 7e-18
 Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 27/163 (16%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V D MT     H +  T T+++A       ++    I   P++D + KL+G+VS  DLL
Sbjct: 3   KVEDMMTR--HPHTLLRTHTLNDA-----KHLMEALDIRHVPIVDANKKLLGIVSQRDLL 55

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
           A                   +   +     +  S      + ++M      V     L++
Sbjct: 56  A-------------------AQESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKE 96

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 246
           +A  + + K   LPVV     LVGIIT  + V  A+ +    E
Sbjct: 97  SAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLLELQE 138

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.5 bits (182), Expect = 2e-17
 Identities = 32/155 (20%), Positives = 61/155 (39%), Gaps = 26/155 (16%)

Query: 84  TVGDFM-TTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
           ++ +    T   + +V+ TT V  A     L I V+ R++  PV+D+  ++V + S +D+
Sbjct: 10  SLEELQIGTYANIAMVRTTTPVYVA-----LGIFVQHRVSALPVVDEKGRVVDIYSKFDV 64

Query: 143 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 202
           + L +       D S+                    T             +       LE
Sbjct: 65  INLAAEKTYNNLDVSV--------------------TKALQHRSHYFEGVLKCYLHETLE 104

Query: 203 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
                L+E +  RL VVD    + GI++  ++++A
Sbjct: 105 AIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQA 139

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 70.6 bits (172), Expect = 3e-16
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 34/157 (21%)

Query: 84  TVGDFMTTK-EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDL 142
           TV   +  K   +  + P  +V  A     ++ +    I    V+ D+   VG++++ D 
Sbjct: 3   TVKHLLQEKGHTVVAIGPDDSVFNA-----MQKMAADNIGALLVMKDEKL-VGILTERD- 55

Query: 143 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 202
                                       +   L        V ++MT     V      E
Sbjct: 56  -------------------------FSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNE 90

Query: 203 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239
           D   L+ E + R LPV+D DGK++G+++ G++V+ A+
Sbjct: 91  DCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 182 KMVGDLMTP---APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 235
           K V  L+       V +    ++ +A + +       L V+  D KLVGI+T  +  
Sbjct: 2   KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFS 57

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 68.5 bits (166), Expect = 3e-15
 Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 26/160 (16%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            +   M       ++     +  A      + + E  I    V ++  +           
Sbjct: 2   NIETLMIKN--PPILSKEDRLGSA-----FKKINEGGIGRIIVANEKIE----------- 43

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                   G            ++   +  Q  L   +   + D MTP PV V  T++   
Sbjct: 44  --------GLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFT 95

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
           A  +++   +  LPVVD + K VGI+T    +     +  
Sbjct: 96  AINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDE 135

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 67.5 bits (164), Expect = 6e-15
 Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 35/157 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            +  +MT   +L  VKP+T+V EA       +++E  +    VI+DD  +VG  +  D++
Sbjct: 6   PIKVYMTK--KLLGVKPSTSVQEA-----SRLMMEFDVGSLVVINDDGNVVGFFTKSDII 58

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
               + G                                 V  +MT   +     T L +
Sbjct: 59  RRVIVPG---------------------------LPYDIPVERIMTRNLITANVNTPLGE 91

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
             R + E + + + + + +GK+VGI T  +++ A+ +
Sbjct: 92  VLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRR 127

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.2 bits (101), Expect = 3e-06
 Identities = 16/64 (25%), Positives = 37/64 (57%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
           +   MT   + V+ +T++++A+RL++E     L V++ DG +VG  T+ +++R  +    
Sbjct: 7   IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL 66

Query: 244 ATEM 247
             ++
Sbjct: 67  PYDI 70

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 67.0 bits (162), Expect = 1e-14
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 28/160 (17%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYD 141
           ++ V  FM+T  ++  +     +D+A     +++++ +     PVIDDD K+VG      
Sbjct: 1   IFPVKVFMST--KVQTIYKEVRLDQA-----VKLMLRRGFRRLPVIDDDNKVVG------ 47

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNL 201
                           +              +       GK+V D+M    V + E  ++
Sbjct: 48  ---------------IVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASV 92

Query: 202 EDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 241
             AA  ++  +   L +++ D  + GIIT  +++ A   I
Sbjct: 93  NRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI 132

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 67.7 bits (164), Expect = 1e-14
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 18/170 (10%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           T  D + T   L V   T  V      T+L +L    I   P+ D +        +    
Sbjct: 21  TSYDVLPTSFRLIVFDVTLFVK-----TSLSLLTLNNIVSAPLWDSEA-------NKFAG 68

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
            L                         +  +LL     +     + P  + V    +L D
Sbjct: 69  LLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMD 128

Query: 204 AARLLLETKYRRLPVVDADG-----KLVGIITRGNVVRA-ALQIKHATEM 247
           A   + +++ RR+P++D DG      +V ++T+  +++  ++  K    +
Sbjct: 129 ACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAML 178

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 66.1 bits (160), Expect = 1e-14
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 34/154 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           T  D M     +  V    T+  A      + + E  I   P+  DD +L G+++D D++
Sbjct: 2   TARDIMNA--GVTCVGEHETLTAA-----AQYMREHDIGALPICGDDDRLHGMLTDRDIV 54

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                +G                             N    G+L   +   V    ++++
Sbjct: 55  IKGLAAGL--------------------------DPNTATAGELARDSIYYVDANASIQE 88

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
              ++ E + RR+PV+  + +LVGI+T  ++ R 
Sbjct: 89  MLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH 121

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 16/64 (25%), Positives = 25/64 (39%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
             D+M      V E   L  AA+ + E     LP+   D +L G++T  ++V   L    
Sbjct: 3   ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL 62

Query: 244 ATEM 247
               
Sbjct: 63  DPNT 66

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 65.2 bits (158), Expect = 4e-14
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 35/154 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           T G  MTT  E   +    TV  A      +  + + I    V+D +  LVG++S     
Sbjct: 2   TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVIS----- 54

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                                       ++ L+   +  ++ D++    + V    + ED
Sbjct: 55  ----------------------------LRDLIVNDDDTLIADILNERVISVHVGDDQED 86

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
            A+ + +  +  +PV D D  L+GI+T  +++  
Sbjct: 87  VAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDV 120

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLL-----LETKYRRLPVVDADGKLVGIITRGNVVRAA 238
            G +MT   V +     +  A  +L     +      + VVD +  LVG+I+  +++   
Sbjct: 3   AGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND 62

Query: 239 LQIKHATEM 247
                A  +
Sbjct: 63  DDTLIADIL 71

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 63.6 bits (154), Expect = 1e-13
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 36/144 (25%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGR 153
           V+ P   V +       E        G P+ D      +LVG++S  D+  L        
Sbjct: 8   VLSPKDRVRDV-----FEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKE------ 56

Query: 154 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 213
                    +   +   E+                    VV      L++A  +L  +K 
Sbjct: 57  ---------EEHDRFLEEIMT-------------KREDLVVAPAGITLKEANEILQRSKK 94

Query: 214 RRLPVVDADGKLVGIITRGNVVRA 237
            +LP+V+ + +LV II R ++ + 
Sbjct: 95  GKLPIVNENDELVAIIARTDLKKN 118

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 41.7 bits (97), Expect = 9e-06
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 76  AAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVG 135
                    + + MT +E+L V     T+       A EIL   +    P+++++ +LV 
Sbjct: 54  LKEEEHDRFLEEIMTKREDLVVAPAGITLK-----EANEILQRSKKGKLPIVNENDELVA 108

Query: 136 LVSDYDLL 143
           +++  DL 
Sbjct: 109 IIARTDLK 116

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 37.4 bits (86), Expect = 3e-04
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 188 MTPAPVVVRETTNLEDAARLLLETKYRRLPVV---DADGKLVGIITRGNVVRAALQIKHA 244
               PVV+     + D         +  +P+        +LVGII+  ++     +    
Sbjct: 2   FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDR 61

Query: 245 TEM 247
              
Sbjct: 62  FLE 64

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 63.8 bits (154), Expect = 2e-13
 Identities = 34/154 (22%), Positives = 55/154 (35%), Gaps = 33/154 (21%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V   M +      V   TTV +A     ++I+ E  + G  V DD+   VGL+S+    
Sbjct: 4   RVEKIMNS--NFKTVNWNTTVFDA-----VKIMNENHLYGLVVKDDNGNDVGLLSE---- 52

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
                                             K +   +  +M      V+   +++D
Sbjct: 53  ----------------------RSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKD 90

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
            A  L E    R  VVD  G++VGI+T  ++ R 
Sbjct: 91  VAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY 124

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 13/64 (20%), Positives = 28/64 (43%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
           V  +M      V   T + DA +++ E     L V D +G  VG+++  ++++  +    
Sbjct: 5   VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK 64

Query: 244 ATEM 247
             + 
Sbjct: 65  KPDE 68

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 63.0 bits (152), Expect = 2e-13
 Identities = 24/155 (15%), Positives = 55/155 (35%), Gaps = 36/155 (23%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
           V D M T  ++  +  T ++++      L   VE       V+ +               
Sbjct: 2   VEDVMVT--DVDTIDITASLEDV-----LRNYVENAKGSSVVVKEGV------------- 41

Query: 145 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 204
              I  +     ++    D                    V ++M    V +     +++A
Sbjct: 42  RVGIVTTWDVLEAIAEGDDLAEV---------------KVWEVMERDLVTISPRATIKEA 86

Query: 205 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 239
           A  +++    RL V + D +++G+I+  +++RA +
Sbjct: 87  AEKMVKNVVWRLLVEE-DDEIIGVISATDILRAKM 120

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.9 bits (149), Expect = 5e-13
 Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 40/156 (25%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
           V  ++T   +  +V+ + TV E      L  + + +     V D +    G+V+      
Sbjct: 3   VKKWVTQ--DFPMVEESATVREC-----LHRMRQYQTNECIVKDREGHFRGVVNK----- 50

Query: 145 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 204
                                       + LL       V + ++     V E  N+  A
Sbjct: 51  ----------------------------EDLLDLDLDSSVFNKVSLPDFFVHEEDNITHA 82

Query: 205 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
             L LE +   LPVVD + +L G ++  + + A ++
Sbjct: 83  LLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE 118

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.4 bits (101), Expect = 3e-06
 Identities = 9/64 (14%), Positives = 26/64 (40%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 243
           V   +T    +V E+  + +    + + +     V D +G   G++ + +++   L    
Sbjct: 3   VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSV 62

Query: 244 ATEM 247
             ++
Sbjct: 63  FNKV 66

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 61.5 bits (148), Expect = 1e-12
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 26/167 (15%)

Query: 85  VGDFMT-TKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           +      T   L      T V +      +++L EK I+  P+++ +  L+ +    D++
Sbjct: 3   LNQMTIGTWSNLATASMETKVYDV-----IKMLAEKNISAVPIVNSEGTLLNVYESVDVM 57

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
            L         D S+   +                                 R T  L+ 
Sbjct: 58  HLIQDGDYSNLDLSVGEALLKRPA--------------------NFDGVHTCRATDRLDG 97

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGAQ 250
               +  ++  RL VVD + KL GI++  +++   +  K  T    +
Sbjct: 98  IFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGVPE 144

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 60.6 bits (146), Expect = 2e-12
 Identities = 43/163 (26%), Positives = 64/163 (39%), Gaps = 37/163 (22%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
             G  MT   E   V+   TV+E            + I    V+D+  +L G++S  DL+
Sbjct: 2   EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI 59

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
             D                                     V ++M P  V VR  T+ E+
Sbjct: 60  VAD---------------------------------PRTRVAEIMNPKVVYVRTDTDQEE 86

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 246
            ARL+ +  +  LPVVD +G+LVGI+T  +V+        ATE
Sbjct: 87  VARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL--EAEATE 127

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 39.4 bits (91), Expect = 7e-05
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 184 VGDLMTPAPVVVRETTNLEDAARLLLETKY-----RRLPVVDADGKLVGIITRGNVVRAA 238
            G LMTP  V VRE   +E+  R L            + VVD  G+L G+++  +++ A 
Sbjct: 3   AGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD 62

Query: 239 LQIKHATEM 247
            + + A  M
Sbjct: 63  PRTRVAEIM 71

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 59.9 bits (144), Expect = 3e-12
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 40/156 (25%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 144
           V   MT       +    T + A     LE+  + ++  FPV++ + K            
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYA-----LELFKKYKVRSFPVVNKEGK------------ 43

Query: 145 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 204
                                      V+++L   + + +  L+     VV+E   L+ A
Sbjct: 44  ---------------------LVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDTLKKA 82

Query: 205 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 240
           A+L+LE  YRR+ VVD+ GK VGI+T G+++R    
Sbjct: 83  AKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA 118

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 58.9 bits (141), Expect = 9e-12
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 29/154 (18%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
           TVG FM   +++  V+    ++ A     L +L +   T  PV+D  ++L GL+      
Sbjct: 3   TVGQFMIEADKVAHVQVGNNLEHA-----LLVLTKTGYTAIPVLDPSYRLHGLIGTNM-- 55

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
            ++SI G  R +     ++        ++ +L           ++               
Sbjct: 56  IMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVI-------------- 101

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
                       + V + +    GI TR  V++ 
Sbjct: 102 --------NNGFVCVENDEQVFEGIFTRRVVLKE 127

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 57.6 bits (138), Expect = 2e-11
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 36/154 (23%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 143
            V ++M T  ++  V     +++       +++ EK I    V+D +  +  +     + 
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDI-----AKVMTEKNIGSVIVVDGNKPVGIITERDIVK 57

Query: 144 ALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED 203
           A+                                K+      + MT + + +RE + +  
Sbjct: 58  AIGKG-----------------------------KSLETKAEEFMTASLITIREDSPITG 88

Query: 204 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
           A  L+ +   R LPVVD  G L GII+  ++ RA
Sbjct: 89  ALALMRQFNIRHLPVVDDKGNLKGIISIRDITRA 122

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 182 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 219
           ++V + M    + V +   L D A+++ E     + VV
Sbjct: 4   EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVV 41

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYD 141
           +       T  EE       T  +++ +  AL ++ +  I   PV+DD   L G++S  D
Sbjct: 59  IGKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRD 118

Query: 142 LL-ALDSI 148
           +  A+D +
Sbjct: 119 ITRAIDDM 126

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 56.4 bits (135), Expect = 5e-11
 Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 38/143 (26%)

Query: 97  VVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRA 154
            + P   V EA      E++   RI+G P+++     KLVG++++ D+  +         
Sbjct: 9   FLTPEHKVSEA-----EELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS-------- 55

Query: 155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR 214
                                    N  +   + +   V     T+LE A R+L E +  
Sbjct: 56  -----------------------DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIE 92

Query: 215 RLPVVDADGKLVGIITRGNVVRA 237
           +LP+VD  G+L G+IT  ++ + 
Sbjct: 93  KLPLVDNSGRLSGLITIKDIEKV 115

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 188 MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA--DGKLVGIITRGNVVRA 237
           +   P  +     + +A  L+   +   +P+V+   + KLVGIIT  ++   
Sbjct: 3   VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI 54

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 53.8 bits (128), Expect = 5e-10
 Identities = 18/156 (11%), Positives = 48/156 (30%), Gaps = 38/156 (24%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVID--DDWKLVGLVSDYD 141
              + +        +  T T+ E         L + R+    +    +  + V       
Sbjct: 2   RTSELLKR--PPVSLPETATIREV-----ATELAKNRVGLAVLTARDNPKRPVA------ 48

Query: 142 LLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNL 201
                                       + ++ +  + +       +  +P+ V +T  +
Sbjct: 49  -----------------------VVSERDILRAVAQRLDLDGPAMPIANSPITVLDTDPV 85

Query: 202 EDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 237
             AA  +     R + VV+ +G+LVG+++  ++   
Sbjct: 86  HVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE 121

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]} Length = 213

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 11/87 (12%), Positives = 35/87 (40%)

Query: 155 DNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR 214
           +  +  E+      F ++ KL  ++   ++ ++ T    +  +  + E   ++      R
Sbjct: 110 NPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKR 169

Query: 215 RLPVVDADGKLVGIITRGNVVRAALQI 241
              ++  + + +G +   +V  A  +I
Sbjct: 170 AAALLKDELEYMGPVRLKDVEEAQQKI 196

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	250
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.89
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.89
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.89
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.89
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.89
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.89
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.88
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.88
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.88
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.87
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.87
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.87
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.86
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.86
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.86
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.84
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.84
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.83
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.82
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.82
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.82
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.8
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.79
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.79
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.77
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.77
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.06
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.98
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.96
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.96
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.96
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.95
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.93
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.92
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.91
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.9
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.89
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.87
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.81
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.81
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.8
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.79
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.75
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.7
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.68
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.66
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.63
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.62
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.6
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.4
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.36
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.34
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	90.69

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.89  E-value=2.5e-23  Score=160.17  Aligned_cols=136  Identities=29%  Similarity=0.342  Sum_probs=115.6

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      ++++|+|++  ++.++.+++++.+|     ++.|.+++++++||+|++|+++|+||..||+++........         
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~~a-----~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~---------   65 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLNDA-----KHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRS---------   65 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC-----------
T ss_pred             EEHHHhCcC--CCeEECCcCCHHHH-----HHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhh---------
Confidence            579999998  89999999999999     99999999999999999999999999999997643221100         


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                                ..........++.++|.++++++++++++.+|+++|.+++++++||+| +|+++|+||+.||++++.+..
T Consensus        66 ----------~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~~~  134 (139)
T d2o16a3          66 ----------AQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLL  134 (139)
T ss_dssp             -----------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHHHH
T ss_pred             ----------hcccccccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence                      000012346789999999999999999999999999999999999999 689999999999999999887


Q ss_pred             hhh
Q 025613          243 HAT  245 (250)
Q Consensus       243 ~~~  245 (250)
                      +..
T Consensus       135 ~~~  137 (139)
T d2o16a3         135 ELQ  137 (139)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            654

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=9.3e-23  Score=155.68  Aligned_cols=126  Identities=26%  Similarity=0.403  Sum_probs=113.3

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      .+|+++|++  ++.++++++++.+|     ++.|.+++++.+||+|++|+++|+||..|+++.....+            
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~~a-----~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~------------   65 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQEA-----SRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPG------------   65 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHHHH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC------------
T ss_pred             CcHHHHcCC--CCeEECCcCcHHHH-----HHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhcc------------
Confidence            379999998  89999999999999     99999999999999999999999999999997643222            


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                                     .....+++++|.++++++++++++.++++.|.+++++++||++ +|+++|+||..|+++++.+..
T Consensus        66 ---------------~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~l  129 (132)
T d2yzia1          66 ---------------LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRL  129 (132)
T ss_dssp             ---------------CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCCS
T ss_pred             ---------------CccceeEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence                           2345789999999999999999999999999999999999876 799999999999999987765


Q ss_pred             h
Q 025613          243 H  243 (250)
Q Consensus       243 ~  243 (250)
                      +
T Consensus       130 e  130 (132)
T d2yzia1         130 E  130 (132)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=4.4e-23  Score=159.51  Aligned_cols=125  Identities=27%  Similarity=0.340  Sum_probs=112.7

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      ++++++|++  ++.++++++++.+|     ++.|.+++++++||+|++|+++|+|+..|+++.....+.           
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~~a-----~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~-----------   64 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVFDA-----VKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK-----------   64 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHH-----HHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC-----------
T ss_pred             EEHHHhCCC--CCcEECCcCcHHHH-----HHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcc-----------
Confidence            579999999  89999999999999     999999999999999999999999999999865432221           


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                     .....+++++|+++++++++++++.+|+++|.+++++++||+|++|+++|+||+.||++++.+
T Consensus        65 ---------------~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          65 ---------------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             ---------------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             ---------------cccccccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhh
Confidence                           234568999999999999999999999999999999999999999999999999999997655

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.89  E-value=6.5e-23  Score=155.68  Aligned_cols=119  Identities=27%  Similarity=0.415  Sum_probs=109.1

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcC-----CCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~-----~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      +++.+|++  +++++++++|+.+|     ++.|++++     +..+||+|++|+++|+++.+++...             
T Consensus         2 taG~iM~~--d~i~v~~~~tv~ea-----~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~-------------   61 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVRSA-----MYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN-------------   61 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHHHH-----HHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS-------------
T ss_pred             ChhHhCCC--CcEEECCCCcHHHH-----HHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccc-------------
Confidence            68899999  99999999999999     99998874     6789999999999999999999842             


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                          ....++.++|.++++++++++++.+|+++|.+++++.+||||++|+++|+||.+||++++
T Consensus        62 --------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          62 --------------------DDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             --------------------CTTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             --------------------cccEEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence                                346789999999999999999999999999999999999999899999999999999988


Q ss_pred             Hhhh
Q 025613          239 LQIK  242 (250)
Q Consensus       239 ~~~~  242 (250)
                      .+..
T Consensus       122 ~eea  125 (127)
T d2ouxa2         122 DDEA  125 (127)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6643

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=1.4e-23  Score=158.19  Aligned_cols=119  Identities=34%  Similarity=0.523  Sum_probs=92.0

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      ++++++|++  +++++++++++.+|     ++.|.+++++++||+|++|+++|+|+.+|++..                 
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~~a-----~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~-----------------   56 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRNYA-----LELFKKYKVRSFPVVNKEGKLVGIISVKRILVN-----------------   56 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-----------------CCEEEEECTTCCEEEEEESSCC--------------------
T ss_pred             CCcccccCC--CCEEECCcCcHHHH-----HHHHHHcCCcEEEEEeccccchhhhhcchhhhh-----------------
Confidence            478999999  89999999999999     999999999999999999999999999999853                 


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                                      .....+.++|.++++++++++++.+|+++|.+++++.+||||++|+++|+||++||++++.+.
T Consensus        57 ----------------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~~  119 (122)
T d2yzqa2          57 ----------------PDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK  119 (122)
T ss_dssp             -----------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             ----------------hcccchhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHhH
Confidence                            234578899999999999999999999999999999999999999999999999999876554

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=1.8e-23  Score=157.73  Aligned_cols=122  Identities=25%  Similarity=0.443  Sum_probs=108.1

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      .+++|+|++  +++++.+++++.+|     ++.|.+++++++||+|++|+++|+||.+||+......+.           
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~~a-----~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~-----------   62 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLTAA-----AQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL-----------   62 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHHHH-----HHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC-----------
T ss_pred             CCHHHhcCC--CCcEECCcCcHHHH-----HHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCC-----------
Confidence            378999998  89999999999999     999999999999999989999999999999865332221           


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                     ......++++|.++++++++++++.+|+++|.+++++++||+| +|+++|+||+.||++++
T Consensus        63 ---------------~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          63 ---------------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             ---------------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHTC
T ss_pred             ---------------CcccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhhC
Confidence                           2235678899999999999999999999999999999999999 68999999999999863

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.7e-22  Score=151.94  Aligned_cols=119  Identities=26%  Similarity=0.349  Sum_probs=111.3

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      ++++++|++  +++++.+++|+.+|     ++.|.+++++.+||+|++|+++|+|+..|++++                 
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~ea-----~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~-----------------   56 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVREC-----LHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL-----------------   56 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHHHH-----HHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS-----------------
T ss_pred             CCchhhhcC--CCeEECCCCCHHHH-----HHhhhhcCcEEEEEEeCCceeEEEeehhhhhhh-----------------
Confidence            468999999  99999999999999     999999999999999999999999999999853                 


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                                      ....++.++|..+++++++++++.++++.|.+.+...+||||++|+++|+||..|+++++.+.
T Consensus        57 ----------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3          57 ----------------DLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  119 (121)
T ss_dssp             ----------------CTTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             ----------------hccccccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHh
Confidence                            235689999999999999999999999999999999999999999999999999999998764

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.88  E-value=2e-22  Score=152.69  Aligned_cols=125  Identities=26%  Similarity=0.423  Sum_probs=112.9

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      ....|+++|++  +++++++++++.+|     ++.|.+++++++||+|+ |+++|+|+.+|+++++...           
T Consensus         2 ~~~~V~d~m~~--~~v~v~~~~tl~~a-----~~~m~~~~~~~~pV~d~-~~~~Givt~~dl~~~~~~~-----------   62 (127)
T d2ef7a1           2 EEEIVKEYMKT--QVISVTKDAKLNDI-----AKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGKG-----------   62 (127)
T ss_dssp             CCCBGGGTSBC--SCCEEETTCBHHHH-----HHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHHTT-----------
T ss_pred             CccCHHHhCCC--CCeEECCcCcHHHH-----HHHHHHcCCceEEeecc-cchhhhcchhHHHHHHHhh-----------
Confidence            34589999999  99999999999999     99999999999999985 7899999999999764311           


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                       .....++.++|.++++++++++++.+|++.|.+.+++++||+|++|+++|+||+.||++++.+
T Consensus        63 -----------------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          63 -----------------KSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             -----------------CCTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             -----------------ccccchhhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence                             234578999999999999999999999999999999999999999999999999999999987


Q ss_pred             h
Q 025613          241 I  241 (250)
Q Consensus       241 ~  241 (250)
                      .
T Consensus       126 ~  126 (127)
T d2ef7a1         126 M  126 (127)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=8.9e-23  Score=155.65  Aligned_cols=130  Identities=19%  Similarity=0.261  Sum_probs=112.5

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      .+++++|.+..++..+.+++++.+|     ++.|.+++++++||+|++|+++|+|+..|+++++.....           
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a-----~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~-----------   65 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHA-----LLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLER-----------   65 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHH-----HHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSS-----------
T ss_pred             CCHHHccccccceEEEcCCCCHHHH-----HHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccc-----------
Confidence            4789999887799999999999999     999999999999999999999999999999987542211           


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                       ..|          +.....+++++|.++++++.+++++.+++.+|.+++  .+||+|++|+++|+||++||++++.+.
T Consensus        66 -~~~----------~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          66 -IEF----------EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             -BCG----------GGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             -ccc----------cccccccccccccccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence             001          123467899999999999999999999999997754  599999999999999999999998764

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=1.4e-22  Score=158.46  Aligned_cols=151  Identities=20%  Similarity=0.293  Sum_probs=112.4

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      .+++++++|.+  +++.+++++++.+|     ++.|.+++++++||+|++|+++|+||..|+++................
T Consensus         2 ~~~~v~~~m~r--~v~~v~~~~~l~~a-----~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~   74 (156)
T d2yzqa1           2 KGVEIEPYYQR--YVSIVWEGTPLKAA-----LKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAAS   74 (156)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHHHH-----HHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------
T ss_pred             CCCCHHHHhcC--CCeEECCcCcHHHH-----HHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccc
Confidence            35689999999  89999999999999     999999999999999999999999999999875432221111111000


Q ss_pred             C-cccchhch--HHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHH
Q 025613          161 E-VDSTWKTF--NEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA  237 (250)
Q Consensus       161 ~-~~~~~~~~--~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~  237 (250)
                      . ....++..  .............++.++|++++.++.+++++.++++.|.+++++++||+|++|+++|+||++||+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          75 SEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             ----------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhhhhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence            0 00001100  00111222345678999999999999999999999999999999999999999999999999999987


Q ss_pred             H
Q 025613          238 A  238 (250)
Q Consensus       238 l  238 (250)
                      +
T Consensus       155 l  155 (156)
T d2yzqa1         155 L  155 (156)
T ss_dssp             G
T ss_pred             h
Confidence            5

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=1.1e-22  Score=157.72  Aligned_cols=121  Identities=34%  Similarity=0.491  Sum_probs=110.6

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcC-----CCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~-----~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      +++.+|++  +++++++++|+.+|     ++.|++++     +..+||+|++|+++|+|+.+|+...             
T Consensus         2 taG~iM~~--~~itv~~~~tv~ea-----~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~-------------   61 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVEEV-----LRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------------   61 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHHHH-----HHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTS-------------
T ss_pred             CcccccCC--CCEEECCCCcHHHH-----HHHHHHhcccccceeeeEEecCCCCEecccchhhhhhc-------------
Confidence            68999999  99999999999999     99998763     6789999999999999999999853             


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                          ....++.++|.++++++++++++.+|+++|.+++++++||||++|+++|+||.+||++++
T Consensus        62 --------------------~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l  121 (144)
T d2yvxa2          62 --------------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  121 (144)
T ss_dssp             --------------------CTTCBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHH
T ss_pred             --------------------ccccchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHH
Confidence                                235789999999999999999999999999999999999999999999999999999998


Q ss_pred             Hhhhhh
Q 025613          239 LQIKHA  244 (250)
Q Consensus       239 ~~~~~~  244 (250)
                      .+...+
T Consensus       122 ~~e~~e  127 (144)
T d2yvxa2         122 EAEATE  127 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHhHH
Confidence            876644

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.87  E-value=1.9e-22  Score=155.11  Aligned_cols=136  Identities=24%  Similarity=0.373  Sum_probs=117.3

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      ++|+++|++  ++.++++++|+.+|     ++.|.+++++++||+|++++++|+++..|+.+.+.....           
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~~a-----~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~-----------   63 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLDQA-----VKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVD-----------   63 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHHHH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHH-----------
T ss_pred             EeeHHhCcC--CCeEEcCcCcHHHH-----HHHHHHcCCCeeecccccCccccccccccchhhhhcccc-----------
Confidence            589999999  89999999999999     999999999999999999999999999999876321100           


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                                ..........+++++|+++++++.+++++.+++++|.+.+++++||+|++|+++|+||++||++++.+..
T Consensus        64 ----------~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~  133 (141)
T d3ddja1          64 ----------KLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHIL  133 (141)
T ss_dssp             ----------HTCTHHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             ----------ccccccccCCCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHH
Confidence                      0000123467899999999999999999999999999999999999999999999999999999998877


Q ss_pred             hhhh
Q 025613          243 HATE  246 (250)
Q Consensus       243 ~~~~  246 (250)
                      ...+
T Consensus       134 ~~~~  137 (141)
T d3ddja1         134 VMEK  137 (141)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            5543

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.86  E-value=8.8e-22  Score=149.19  Aligned_cols=123  Identities=28%  Similarity=0.472  Sum_probs=108.2

Q ss_pred             eeccccccC-CceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           84 TVGDFMTTK-EELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        84 ~v~~~m~~~-~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      +++++|..+ .+++++.+++|+.+|     ++.|.+++++++||++ +|+++|+||.+|+++.....+.           
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a-----~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~-----------   65 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNA-----MQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK-----------   65 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHH-----HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS-----------
T ss_pred             cHHHHHccCCCccEEECCcCcHHHH-----HHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcc-----------
Confidence            688899753 378999999999999     9999999999999998 6899999999999875432221           


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                                     .....++.++|+++++++.+++++.+|+++|.+.+++++||+| +|+++|+||..||++++.
T Consensus        66 ---------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          66 ---------------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             ---------------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ---------------cccceeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence                           2335789999999999999999999999999999999999999 799999999999999874

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.86  E-value=1.5e-21  Score=152.62  Aligned_cols=149  Identities=19%  Similarity=0.221  Sum_probs=116.4

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC--CCcEEEEEehHHHHhhhhccCCCCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSM  158 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~--~g~~~GiVt~~dL~~~~~~~~~~~~~~~~  158 (250)
                      ..++|+|+|++  +++++++++++.++     ++.|.+++++++||+|+  ++.++|+++..|++.++............
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~e~-----~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~   81 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYGDL-----LHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPF   81 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHHHH-----HHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCC
T ss_pred             cceEHHHhcCC--CCeEECCCCcHHHH-----HHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccch
Confidence            36799999998  99999999999999     99999999999999985  47899999999999875432211111111


Q ss_pred             CCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          159 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                      .. .. ...................+.++|.++++++.+++++.+|+++|.+.+++++||++ +|+++||||++||++++
T Consensus        82 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          82 EE-ML-TLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             CS-CC-BHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             hh-cc-ccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHh
Confidence            11 11 11111222222234456678899999999999999999999999999999999998 69999999999999987


Q ss_pred             H
Q 025613          239 L  239 (250)
Q Consensus       239 ~  239 (250)
                      .
T Consensus       159 ~  159 (160)
T d2d4za3         159 E  159 (160)
T ss_dssp             H
T ss_pred             C
Confidence            4

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=7.5e-22  Score=148.14  Aligned_cols=119  Identities=23%  Similarity=0.363  Sum_probs=106.4

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcc
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD  163 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~  163 (250)
                      +|+|+|++  +++++++++|+.+|     ++.|.+++++.+||++ +|+++|+||.+||++++....             
T Consensus         1 kV~diM~~--~~~~v~~~~sl~ea-----~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~-------------   59 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLEDV-----LRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD-------------   59 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHH-----HHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC-------------
T ss_pred             ChHHhCCC--CCeEECCcCcHHHH-----HHHHHHcCceEEEEEe-CCcEEEEEEeeeccccccccc-------------
Confidence            47899999  99999999999999     9999999999999988 489999999999998643221             


Q ss_pred             cchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          164 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                                    .....++.++|+++++++++++++.+|++.|.+++++++||++ +|+++|+||+.||+++.
T Consensus        60 --------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          60 --------------DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             --------------CTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             --------------cccceeEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence                          2345789999999999999999999999999999999999987 79999999999999874

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.84  E-value=1.3e-20  Score=142.49  Aligned_cols=111  Identities=29%  Similarity=0.513  Sum_probs=96.4

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC--CCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchHH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE  171 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~--~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (250)
                      +++++++++|+.+|     +++|.+++++++||+|+  +|+++|+||.+|+.+...                        
T Consensus         6 dpvtv~~~~tv~~a-----~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~------------------------   56 (126)
T d1zfja4           6 DPFFLTPEHKVSEA-----EELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD------------------------   56 (126)
T ss_dssp             SCCCBCSSSBHHHH-----HHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC------------------------
T ss_pred             CceEECCCCCHHHH-----HHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhc------------------------
Confidence            67899999999999     99999999999999996  688999999999986421                        


Q ss_pred             HHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          172 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       172 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                             ........+|..+++++++++++.+|+++|.+.+++++||||++|+++|+||+.||++++..
T Consensus        57 -------~~~~~~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          57 -------YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             -------SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             -------cCCceeeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence                   11222344557778899999999999999999999999999999999999999999998653

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=2e-21  Score=148.24  Aligned_cols=134  Identities=24%  Similarity=0.306  Sum_probs=112.1

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      ++|+++|++  +++++.+++++.+|     ++.|.+++++++||+|+  +++|+++..|+.+++.....           
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~~a-----~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~~~~~-----------   60 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLGSA-----FKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVESYCK-----------   60 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHHHH-----HHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGTTCC------------
T ss_pred             CEeeEEeeC--CCeEECCCCcHHHH-----HHHHHHhCCeEEEEEec--ceeceeeccchhhhhccccc-----------
Confidence            478999998  89999999999999     99999999999999974  79999999999986432211           


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                         ....   ..........+++++|.++++++++++++.+|++.|.+++++++||+|++|+++|+||++||++++.++.
T Consensus        61 ---~~~~---~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~l~  134 (135)
T d3ddja2          61 ---DSCS---QGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLD  134 (135)
T ss_dssp             -----CC---HHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSC
T ss_pred             ---cchh---hhhccccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHHhc
Confidence               0000   0111123467899999999999999999999999999999999999999999999999999999887653

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.83  E-value=1.3e-20  Score=143.00  Aligned_cols=126  Identities=17%  Similarity=0.213  Sum_probs=107.9

Q ss_pred             ceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEe--CCCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           83 YTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        83 ~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd--~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      ++|+|+|++  +++++++++++.+|     ++.|.+++++++||++  ++++++|+++..|+.++....           
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~ea-----~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~-----------   62 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIREV-----ATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR-----------   62 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHH-----HHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT-----------
T ss_pred             CCHHHhccC--CCEEECCCCcHHHH-----HHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccc-----------
Confidence            478999998  89999999999999     9999999999999994  458899999999999764321           


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                                        .........|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++++..
T Consensus        63 ------------------~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~~  124 (131)
T d2riha1          63 ------------------LDLDGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  124 (131)
T ss_dssp             ------------------CCTTSBSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             ------------------cccccccccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence                              12233444556678899999999999999999999999999999999999999999998777


Q ss_pred             hhhh
Q 025613          241 IKHA  244 (250)
Q Consensus       241 ~~~~  244 (250)
                      +.+.
T Consensus       125 l~~~  128 (131)
T d2riha1         125 LLEL  128 (131)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            6654

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=1.4e-20  Score=145.18  Aligned_cols=139  Identities=24%  Similarity=0.406  Sum_probs=109.1

Q ss_pred             eeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCC-CCCCCCCCCc
Q 025613           84 TVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG-RADNSMFPEV  162 (250)
Q Consensus        84 ~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~-~~~~~~~~~~  162 (250)
                      .+.++|..  +++++.+++++.+|     ++.|.+++++++||+|++|+++|+|+..||.++....... ......    
T Consensus         5 ~v~~~m~~--~p~~v~~~~~v~~a-----~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~----   73 (145)
T d1o50a3           5 DVCKLISL--KPTVVEEDTPIEEI-----VDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEEL----   73 (145)
T ss_dssp             HHTTSSCC--CCEEECTTCBHHHH-----HHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC--------
T ss_pred             EhHHhCCC--CCEEECCcCcHHHH-----HHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHH----
Confidence            46778988  89999999999999     9999999999999999999999999999998764321100 000000    


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                               ...........++.++|. +++++.+++++.+|++.|.+++++++||||++|+++|+||..||++++.+..
T Consensus        74 ---------~~~~~~~~~~~~~~~~~~-~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~~  143 (145)
T d1o50a3          74 ---------IRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  143 (145)
T ss_dssp             ------------CCCCCSSCBHHHHCB-CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             ---------HHhhhhhccccCHHHHcC-CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhcC
Confidence                     000001223455667774 4789999999999999999999999999999999999999999999998765


Q ss_pred             h
Q 025613          243 H  243 (250)
Q Consensus       243 ~  243 (250)
                      +
T Consensus       144 ~  144 (145)
T d1o50a3         144 E  144 (145)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.82  E-value=5.6e-20  Score=143.35  Aligned_cols=130  Identities=20%  Similarity=0.273  Sum_probs=105.6

Q ss_pred             eecccccc-CCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           84 TVGDFMTT-KEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        84 ~v~~~m~~-~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      ++++++.+ ..+++++.+++++.+|     ++.|.+++++++||+|++|+++|+|+..||++++.....           
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a-----~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~-----------   65 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDV-----IKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDY-----------   65 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHH-----HHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCG-----------
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHH-----HHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccc-----------
Confidence            45555543 2378999999999999     999999999999999999999999999999976432221           


Q ss_pred             ccchhchHHHHHHHhccCCCcccc------cccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGD------LMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                                     .....++.+      .|..++.++.+++++.+++++|.+++++++||||++|+++|+||+.||++
T Consensus        66 ---------------~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~  130 (153)
T d2ooxe2          66 ---------------SNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILN  130 (153)
T ss_dssp             ---------------GGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHH
T ss_pred             ---------------cccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHH
Confidence                           111233333      44566789999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhh
Q 025613          237 AALQIKHA  244 (250)
Q Consensus       237 ~l~~~~~~  244 (250)
                      ++......
T Consensus       131 ~~~~~~~~  138 (153)
T d2ooxe2         131 YIIYDKTT  138 (153)
T ss_dssp             HHHSCTTC
T ss_pred             HHHcCccc
Confidence            98764433

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.7e-20  Score=148.61  Aligned_cols=156  Identities=20%  Similarity=0.283  Sum_probs=110.9

Q ss_pred             ceeccccccCCc----eeEeCCCCchhcccchhHHHHHHHcCCCeeEEE--eCCCcEEEEEehHHHHhhhhccCCCCCCC
Q 025613           83 YTVGDFMTTKEE----LHVVKPTTTVDEAFVPTALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGRADN  156 (250)
Q Consensus        83 ~~v~~~m~~~~~----~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vv--d~~g~~~GiVt~~dL~~~~~~~~~~~~~~  156 (250)
                      +.++|+|.+...    .+.+.+++|+.++     .++|.+++++++||+  +++|+++|+|+.+||+.++..........
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a-----~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~   77 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDV-----ETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGV   77 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHH-----HHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCC
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHH-----HHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhccccccccc
Confidence            357889976422    2445678899999     999999999999999  45688999999999998754321110000


Q ss_pred             CCCCCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHH
Q 025613          157 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR  236 (250)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~  236 (250)
                      .... .  .+..-.............++.++|.++++++.+++++.+++++|.+++.+.+||++ +|+++|+||+.||++
T Consensus        78 ~~~~-~--~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~  153 (169)
T d2j9la1          78 VSTS-I--IYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLK  153 (169)
T ss_dssp             CTTC-E--EECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHH
T ss_pred             ccch-h--hhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHH
Confidence            0000 0  00000000000012345678999999999999999999999999999999999987 789999999999999


Q ss_pred             HHHhhhhhhhc
Q 025613          237 AALQIKHATEM  247 (250)
Q Consensus       237 ~l~~~~~~~~~  247 (250)
                      ++.+..++...
T Consensus       154 ~l~~~~~~~~~  164 (169)
T d2j9la1         154 HIAQMANQDPD  164 (169)
T ss_dssp             HHHHHCC----
T ss_pred             HHHHHhcCCcc
Confidence            99998776544

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=3.7e-20  Score=144.87  Aligned_cols=144  Identities=20%  Similarity=0.218  Sum_probs=110.0

Q ss_pred             CCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC-CCcEEEEEehHHHHhhhhccCCCCCCCCCC
Q 025613           81 GVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMF  159 (250)
Q Consensus        81 ~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~-~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~  159 (250)
                      ...+++|+|....++++++.++++.+|     ++.|.+++++++||+++ +++++|+|+..||...+.............
T Consensus        11 ~~~t~~Dlm~~~~~vv~l~~~~sv~eA-----~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~   85 (159)
T d2v8qe2          11 KSHRCYDLIPTSSKLVVFDTSLQVKKA-----FFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYE   85 (159)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHH-----HHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCC
T ss_pred             cCCEEEeECCCCCceEEEcCCCcHHHH-----HHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhh
Confidence            445899999776688999999999999     99999999999999985 588999999999987643211000000000


Q ss_pred             CCcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHHHHHH
Q 025613          160 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD-ADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~~vGiIt~~Dil~~l  238 (250)
                      .....       .     ........++|.++++++++++++.+|+++|.+++.+++||+| ++|+++|+||.+||++++
T Consensus        86 ~~~~~-------~-----~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          86 LEEHK-------I-----ETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             GGGCB-------H-----HHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             hhhhh-------c-----ccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence            00000       0     0011234668888899999999999999999999999999998 468999999999999998


Q ss_pred             Hhh
Q 025613          239 LQI  241 (250)
Q Consensus       239 ~~~  241 (250)
                      ...
T Consensus       154 ~~~  156 (159)
T d2v8qe2         154 KLF  156 (159)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=4.9e-19  Score=135.85  Aligned_cols=125  Identities=20%  Similarity=0.297  Sum_probs=96.4

Q ss_pred             ccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchh
Q 025613           88 FMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK  167 (250)
Q Consensus        88 ~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~  167 (250)
                      +|..  ++.++.+++++.+|     ++.|.+++++++||+|++|+++|+|+..|+.+++..........           
T Consensus        14 ~~~~--~v~tv~~~~~v~~a-----~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~-----------   75 (140)
T d2nyca1          14 ITQD--NMKSCQMTTPVIDV-----IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL-----------   75 (140)
T ss_dssp             CBCS--SCCCBCTTSBHHHH-----HHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCS-----------
T ss_pred             ccCC--CCEEEcCcCcHHHH-----HHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhcccccccc-----------
Confidence            4555  89999999999999     99999999999999999999999999999998754322100000           


Q ss_pred             chHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          168 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       168 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      ..         .........+..+++++++++++.+++++|.+.+++.+||||++|+++|+||.+||++++.
T Consensus        76 ~~---------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          76 SV---------GEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             BH---------HHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ch---------hhhhhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence            00         0001123345667889999999999999999999999999999999999999999999874

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=5.2e-19  Score=136.30  Aligned_cols=133  Identities=22%  Similarity=0.313  Sum_probs=105.6

Q ss_pred             eecccccc-CCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhhccCCCCCCCCCCCCc
Q 025613           84 TVGDFMTT-KEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  162 (250)
Q Consensus        84 ~v~~~m~~-~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~  162 (250)
                      ++++++.. ..+++++.+++++.+|     ++.|.+++++++||+|++|+++|+||..|+++.+........        
T Consensus        10 ~l~~l~i~~~~~v~~v~~~~tv~ea-----l~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~--------   76 (145)
T d2v8qe1          10 SLEELQIGTYANIAMVRTTTPVYVA-----LGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNL--------   76 (145)
T ss_dssp             BHHHHTCSBCSSCCCEETTCBHHHH-----HHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCC--------
T ss_pred             CHHHHcCCCCCCceEEcCcCcHHHH-----HHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccch--------
Confidence            45555432 1268999999999999     999999999999999999999999999999976542211000        


Q ss_pred             ccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          163 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                         ...         ..........|..+++++.+++++.++++.|.+++++++||+|++|+++|+||..||++++...
T Consensus        77 ---~~~---------v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~~  143 (145)
T d2v8qe1          77 ---DVS---------VTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLT  143 (145)
T ss_dssp             ---SSB---------HHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSS
T ss_pred             ---hhh---------hhhccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHhc
Confidence               000         0001234556778899999999999999999999999999999999999999999999998753

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.77  E-value=1.9e-19  Score=143.46  Aligned_cols=151  Identities=23%  Similarity=0.281  Sum_probs=112.3

Q ss_pred             CceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC-CCcEEEEEehHHHHhhhhccCCCCCCCCCCC
Q 025613           82 VYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFP  160 (250)
Q Consensus        82 ~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~-~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~  160 (250)
                      ..++.|+|.+..++++++++.++.+|     +..|.+++++++||+|+ +++++|+||..|+.+++.......    ..+
T Consensus        19 ~~~~~dvm~~s~~vv~i~~~~~v~~A-----~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~----~~~   89 (179)
T d2ooxe1          19 SRTSYDVLPTSFRLIVFDVTLFVKTS-----LSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSS----SFP   89 (179)
T ss_dssp             HSBHHHHSCSEEEEEEEETTSBHHHH-----HHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHC----SCG
T ss_pred             CCEeeeeCCCCCcEEEEECcchHHHH-----HHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccc----cch
Confidence            34789999865589999999999999     99999999999999995 588999999999997643211000    000


Q ss_pred             CcccchhchHHHHHHHhccCCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCC-----cEEEEEehHHHH
Q 025613          161 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG-----KLVGIITRGNVV  235 (250)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g-----~~vGiIt~~Dil  235 (250)
                      .....+.......    .........+|.++++++.+++++.+|+++|.+++++++||+|++|     +++|+||+.||+
T Consensus        90 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIl  165 (179)
T d2ooxe1          90 EAIAEIDKFRLLG----LREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRIL  165 (179)
T ss_dssp             GGGGGGGGSBHHH----HHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHH
T ss_pred             hhhhhhhccchhh----hcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHH
Confidence            1111111000000    0011234456888899999999999999999999999999998654     699999999999


Q ss_pred             HHHHhhhhhh
Q 025613          236 RAALQIKHAT  245 (250)
Q Consensus       236 ~~l~~~~~~~  245 (250)
                      +++....++.
T Consensus       166 k~l~~~~~~~  175 (179)
T d2ooxe1         166 KFISMNCKET  175 (179)
T ss_dssp             HHHHTTCGGG
T ss_pred             HHHHHhhhHh
Confidence            9998776654

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.77  E-value=2.4e-20  Score=139.95  Aligned_cols=110  Identities=25%  Similarity=0.475  Sum_probs=59.6

Q ss_pred             ceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeC---CCcEEEEEehHHHHhhhhccCCCCCCCCCCCCcccchhchH
Q 025613           94 ELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN  170 (250)
Q Consensus        94 ~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~---~g~~~GiVt~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (250)
                      +++++.+++++.+|     ++.|.+++++++||+|+   +|+++|+||.+|+..+..                       
T Consensus         5 ~pvtv~~~~tl~da-----~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~-----------------------   56 (120)
T d1jr1a4           5 DPVVLSPKDRVRDV-----FEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKE-----------------------   56 (120)
T ss_dssp             TTCC----CCCC-------CCBC---------------CTTCCC------------------------------------
T ss_pred             CCEEECCcCCHHHH-----HHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhc-----------------------
Confidence            56799999999999     99999999999999985   579999999999864311                       


Q ss_pred             HHHHHHhccCCCcccccc--cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHH
Q 025613          171 EVQKLLSKTNGKMVGDLM--TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA  238 (250)
Q Consensus       171 ~~~~~~~~~~~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l  238 (250)
                             .....++..+|  .++++++++++++.+|+++|.+++++++||||++|+++|+||++||++..
T Consensus        57 -------~~~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          57 -------EEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             ----------------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred             -------cccCceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence                   11223444444  45688999999999999999999999999999999999999999999864

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.06  E-value=2e-10  Score=85.61  Aligned_cols=107  Identities=14%  Similarity=0.202  Sum_probs=77.9

Q ss_pred             cccceecCCCChhHHHHHhhhcCC------eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613           31 LQLPCLLLSRPGCRVFSVLATSSD------RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (250)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v  104 (250)
                      ..+.++..+.++.+++..|.++..      .++...+...+.+-..+.  .........+++++|++  +++++++++++
T Consensus         9 ~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~--~l~~~~~~~~v~~im~~--~~~~v~~~~~l   84 (127)
T d2ouxa2           9 TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLR--DLIVNDDDTLIADILNE--RVISVHVGDDQ   84 (127)
T ss_dssp             SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHH--HHTTSCTTSBHHHHSBS--CCCCEETTSBH
T ss_pred             CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEee--ccccccccEEhhhhccC--CCccCCCCCCH
Confidence            346678889999999998866532      222222111111111110  01223345789999998  89999999999


Q ss_pred             hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      .++     ++.|.++++..+||+|++|+++|+||..|++.++
T Consensus        85 ~~a-----~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          85 EDV-----AQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             HHH-----HHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HHH-----HHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            999     9999999999999999999999999999999763

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.98  E-value=3.8e-10  Score=85.19  Aligned_cols=61  Identities=33%  Similarity=0.491  Sum_probs=56.8

Q ss_pred             CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613          182 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       182 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                      ..++++|+++++++++++++.+|++.|.+++++.+||+|++|+++|+||..|+++++.+..
T Consensus         2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~   62 (139)
T d2o16a3           2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSL   62 (139)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhh
Confidence            3688999999999999999999999999999999999999999999999999999887653

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.96  E-value=2.4e-09  Score=78.82  Aligned_cols=107  Identities=16%  Similarity=0.113  Sum_probs=81.2

Q ss_pred             cccceecCCCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccc
Q 025613           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFV  109 (250)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~  109 (250)
                      ..+|.+..+.++.+++..|.++.. .++...+..-..+-..  ...........++.++|+.  +++++++++++.++  
T Consensus         9 ~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~--~~dl~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~--   82 (121)
T d1vr9a3           9 QDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVN--KEDLLDLDLDSSVFNKVSL--PDFFVHEEDNITHA--   82 (121)
T ss_dssp             SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEE--GGGGTTSCTTSBSGGGCBC--TTCCEETTSBHHHH--
T ss_pred             CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEee--hhhhhhhhccccccccccC--ccEEECCCCCHHHH--
Confidence            457889999999999999988877 4444432211111000  0001223345689999998  88999999999999  


Q ss_pred             hhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          110 PTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       110 ~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                         ++.|.+++...+||+|++|+++|+||..|+++++
T Consensus        83 ---~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l  116 (121)
T d1vr9a3          83 ---LLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEAL  116 (121)
T ss_dssp             ---HHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             ---HHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHH
Confidence               9999999999999999999999999999999763

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.96  E-value=7.8e-10  Score=82.75  Aligned_cols=60  Identities=27%  Similarity=0.486  Sum_probs=56.3

Q ss_pred             CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      ..|++++|+++++++++++++.+|++.|.+++++.+||+|++|+++|+||..|+++.+..
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~   63 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV   63 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhh
Confidence            468999999999999999999999999999999999999999999999999999987654

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.96  E-value=7.2e-10  Score=84.04  Aligned_cols=109  Identities=14%  Similarity=0.078  Sum_probs=83.1

Q ss_pred             cccceecCCCChhHHHHHhhhcCC-eeeeeCCC--cc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613           31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS--SA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (250)
Q Consensus        31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v  104 (250)
                      ..++++..+.++.+++..|.+... .++...+.  +.   ...+...............+++++|..  +++++.+++++
T Consensus        11 ~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l   88 (142)
T d1pvma4          11 SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDV   88 (142)
T ss_dssp             TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBH
T ss_pred             CCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccccccccccccccc--ccccccchhhH
Confidence            347789999999999999987765 45444432  21   111111111112344566789999998  89999999999


Q ss_pred             hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      .++     ++.|.+++..++||+|++|+++|+|+..||++++
T Consensus        89 ~~~-----~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          89 KDV-----AAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             HHH-----HHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             HHH-----HHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHH
Confidence            999     9999999999999999999999999999999753

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=1.1e-09  Score=80.87  Aligned_cols=105  Identities=12%  Similarity=0.184  Sum_probs=63.1

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhcccch
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVP  110 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~  110 (250)
                      .++++..+.++.++++.|.+... .++...+..-..+-  +.............++++|.+  +++++++++++.++   
T Consensus        10 ~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~--it~~dl~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~---   82 (122)
T d2yzqa2          10 NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGI--ISVKRILVNPDEEQLAMLVKR--DVPVVKENDTLKKA---   82 (122)
T ss_dssp             SCCCEESSCC------------CCEEEEECTTCCEEEE--EESSCC----------CCCBS--CCCEEETTSBHHHH---
T ss_pred             CCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhh--hhcchhhhhhcccchhhcccc--ceeecchhhHHHHH---
Confidence            36678889999999999987765 44444332111111  111111223445578999998  89999999999999   


Q ss_pred             hHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          111 TALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       111 ~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                        ++.|.++++..+||+|++|+++|+||..|+++.
T Consensus        83 --~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~  115 (122)
T d2yzqa2          83 --AKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR  115 (122)
T ss_dssp             --HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             --HHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHH
Confidence              999999999999999999999999999999975

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=2.1e-09  Score=82.24  Aligned_cols=107  Identities=21%  Similarity=0.239  Sum_probs=79.8

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc-----cccccccc-----------------------------ccCCC
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS-----AVFASGTL-----------------------------TANSA   76 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~-----~~~~~~~~-----------------------------~~~~~   76 (250)
                      .+.|+..+.|+.+++..|.+... .++......     +...+...                             .....
T Consensus        13 ~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (156)
T d2yzqa1          13 YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKF   92 (156)
T ss_dssp             CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------------------
T ss_pred             CCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhhhhhhhhhHHHh
Confidence            47789999999999999988877 566553321     00001000                             00001


Q ss_pred             CCCCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus        77 ~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      .......+++++|++  ++.++.+++++.++     ++.|.+++++++||+|++|+++|+||..||+++
T Consensus        93 ~~~~~~~~v~~~m~~--~~~tv~~~~~l~~~-----~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          93 ELQLPNKPVAEIMTR--DVIVATPHMTVHEV-----ALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             ----CCCBGGGTCBS--SCCCBCTTSBHHHH-----HHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhcccCCEeehhccc--CceEECcccccHHH-----HHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence            123456689999998  89999999999999     999999999999999999999999999999975

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.92  E-value=2.8e-09  Score=80.91  Aligned_cols=106  Identities=17%  Similarity=0.233  Sum_probs=75.9

Q ss_pred             ccceecCCCChhHHHHHhhhcCC------eeeeeCCCcccccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD------RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      .+..+..+.++.+++..|.++..      .++...+...+.+-...  ..........+++++|++  +++++++++++.
T Consensus        10 ~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~--~dl~~~~~~~~v~~im~~--~~~~v~~~~~~~   85 (144)
T d2yvxa2          10 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSL--RDLIVADPRTRVAEIMNP--KVVYVRTDTDQE   85 (144)
T ss_dssp             CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBH--HHHTTSCTTCBSTTTSBS--SCCCEESSCCHH
T ss_pred             CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccch--hhhhhcccccchHHhccc--CCccCCCCChHH
Confidence            45567889999999988865531      12212111111110000  001223445689999999  899999999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      +|     ++.|.++++..+||+|++|+++|+||..||++++
T Consensus        86 ~a-----~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l  121 (144)
T d2yvxa2          86 EV-----ARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL  121 (144)
T ss_dssp             HH-----HHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHH
T ss_pred             HH-----HHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHH
Confidence            99     9999999999999999999999999999999763

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.91  E-value=5.6e-10  Score=83.55  Aligned_cols=108  Identities=21%  Similarity=0.208  Sum_probs=80.1

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCcc--c-ccccccccCC---------CCCCCCCceeccccccCCceeEe
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSA--V-FASGTLTANS---------AAPSSGVYTVGDFMTTKEELHVV   98 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~--~-~~~~~~~~~~---------~~~~~~~~~v~~~m~~~~~~~~v   98 (250)
                      .++++..+.++.+++..|.+... .++...+...  . ..+.......         ........+++++|+.  ++.++
T Consensus        10 ~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v   87 (135)
T d3ddja2          10 NPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTP--NPVTV   87 (135)
T ss_dssp             SCCEECTTSBHHHHHHHTTGGGCCEEEEESSSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEE--SCCCE
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCeEEEEEecceeceeeccchhhhhccccccchhhhhccccccCCHHHHhCC--ccceE
Confidence            47788899999999999976665 5555543210  0 0000000000         0112245689999999  89999


Q ss_pred             CCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613           99 KPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus        99 ~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      ++++++.+|     ++.|.+++++++||+|++|+++|+||.+|++++.
T Consensus        88 ~~~~~l~~a-----~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~  130 (135)
T d3ddja2          88 YNTSDEFTA-----INIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY  130 (135)
T ss_dssp             ETTSCHHHH-----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGG
T ss_pred             Eeccccchh-----hhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            999999999     9999999999999999999999999999999863

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.90  E-value=1.4e-09  Score=80.74  Aligned_cols=106  Identities=17%  Similarity=0.196  Sum_probs=80.4

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCcc----cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSA----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~  106 (250)
                      .+.++..+.++.+++..|.+... .++..++..+    ...+...............+++++|++  ++.++.+++++.+
T Consensus        14 ~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~   91 (127)
T d2rc3a1          14 TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNED   91 (127)
T ss_dssp             CCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHHH
T ss_pred             ccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhhhcccccceeEeeeccc--eeEEeccCccHHH
Confidence            36778899999999999987765 5554443311    111111111112344556789999998  8999999999999


Q ss_pred             ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      +     ++.|.+++++++||+| +|+++|+||..|++++
T Consensus        92 a-----~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          92 C-----MALITEMRVRHLPVLD-DGKVIGLLSIGDLVKD  124 (127)
T ss_dssp             H-----HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             H-----HHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHH
Confidence            9     9999999999999998 6899999999999975

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=4.3e-10  Score=83.11  Aligned_cols=57  Identities=28%  Similarity=0.442  Sum_probs=53.0

Q ss_pred             cccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHH
Q 025613          183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL  239 (250)
Q Consensus       183 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~  239 (250)
                      +++++|+++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..||+..+.
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~   58 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGL   58 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTG
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhh
Confidence            578899999999999999999999999999999999998899999999999987543

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.87  E-value=1.2e-09  Score=81.16  Aligned_cols=108  Identities=19%  Similarity=0.224  Sum_probs=80.4

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCccc--ccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhccc
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAV--FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAF  108 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~  108 (250)
                      .+.++..+.++.+++..|.+... .++...+....  -....+............+++++|.+  ++.++.+++++.++ 
T Consensus        13 ~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~-   89 (127)
T d2ef7a1          13 QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEEFMTA--SLITIREDSPITGA-   89 (127)
T ss_dssp             SCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE--CCCCEETTSBHHHH-
T ss_pred             CCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHHhhccccchhhhhhhh--hccccccccchhHH-
Confidence            46788999999999999977665 44544432111  00000000001233445689999998  89999999999999 


Q ss_pred             chhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          109 VPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       109 ~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                          ++.|.+++++++||+|++|+++|+||..||++++
T Consensus        90 ----~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i  123 (127)
T d2ef7a1          90 ----LALMRQFNIRHLPVVDDKGNLKGIISIRDITRAI  123 (127)
T ss_dssp             ----HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             ----HHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHH
Confidence                9999999999999999999999999999999764

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.81  E-value=3e-09  Score=79.37  Aligned_cols=60  Identities=28%  Similarity=0.448  Sum_probs=54.7

Q ss_pred             Ccccccc--cCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhh
Q 025613          182 KMVGDLM--TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       182 ~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~  241 (250)
                      .+++++|  .++.+++.+++++.+|+++|.+++++.+||+|++|+++|+||..||++.+.+.
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~   63 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL   63 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCS
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcc
Confidence            4678899  45789999999999999999999999999999899999999999999988653

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.81  E-value=2.6e-09  Score=78.49  Aligned_cols=105  Identities=16%  Similarity=0.190  Sum_probs=78.7

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeC-CCcc---cccccccccCCCCCCCCCceeccccccCCceeEeCCCCchhc
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE  106 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~~  106 (250)
                      .++++..+.++.++...+.+... .++... +.+.   ...+.. ............+++++|++  +++++++++++.+
T Consensus         9 ~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~-~~l~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~   85 (120)
T d1pbja3           9 DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKVWEVMER--DLVTISPRATIKE   85 (120)
T ss_dssp             SCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHH-HHHHHTCCTTTSBHHHHCBC--GGGEECTTSCHHH
T ss_pred             CCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeecc-ccccccccccceeEeeeccc--ccccccchhHHHH
Confidence            46788999999999999977665 333332 2211   111110 00112345667789999998  8999999999999


Q ss_pred             ccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          107 AFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      |     ++.|.+++..++||++ +|+++|+||..|++++
T Consensus        86 a-----~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          86 A-----AEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             H-----HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             H-----HHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence            9     9999999999999987 6899999999999975

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.80  E-value=4.7e-09  Score=79.23  Aligned_cols=60  Identities=30%  Similarity=0.341  Sum_probs=55.3

Q ss_pred             cccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613          183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       183 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                      .+.++|+++|+++.+++++.+|++.|.++++..+||+|++|+++|+||..||+..+....
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~   64 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF   64 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHH
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhccc
Confidence            467789999999999999999999999999999999998999999999999998876543

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.79  E-value=5e-09  Score=78.71  Aligned_cols=61  Identities=31%  Similarity=0.497  Sum_probs=56.8

Q ss_pred             CcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613          182 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       182 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                      .|++++|+++++++++++++.+|+++|.+++++.+||++++++++|++|..|+++++....
T Consensus         2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~   62 (141)
T d3ddja1           2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAV   62 (141)
T ss_dssp             CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccc
Confidence            4789999999999999999999999999999999999999999999999999998876543

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.75  E-value=1.2e-08  Score=75.33  Aligned_cols=102  Identities=16%  Similarity=0.130  Sum_probs=73.9

Q ss_pred             cceecCCCChhHHHHHhhhcCC-eeeeeCC--C----ccc-ccccccccCCCCCCCCCceeccccccCCceeEeCCCCch
Q 025613           33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR--S----SAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV  104 (250)
Q Consensus        33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~----~~~-~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v  104 (250)
                      ..++..+.++.++++.|.++.. .++...+  .    ... ..+.  ..   ...........+|..  +++++.+++++
T Consensus         7 pvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di--~~---~~~~~~~~~~~~~~~--~~~~~~~~~~l   79 (126)
T d1zfja4           7 PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM--RF---ISDYNAPISEHMTSE--HLVTAAVGTDL   79 (126)
T ss_dssp             CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHH--HH---CSCSSSBTTTSCCCS--CCCCEETTCCH
T ss_pred             ceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHH--HH---hhccCCceeeeeecc--ceeecCCCCCH
Confidence            4468889999999999998876 5555432  1    111 1111  10   111122233445555  78899999999


Q ss_pred             hcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          105 DEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      .++     ++.|.+++++.+||+|++|+++|+||..|++++.
T Consensus        80 ~~a-----~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4          80 ETA-----ERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI  116 (126)
T ss_dssp             HHH-----HHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             HHH-----HHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHh
Confidence            999     9999999999999999999999999999999863

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.70  E-value=3.3e-08  Score=75.25  Aligned_cols=64  Identities=27%  Similarity=0.339  Sum_probs=58.3

Q ss_pred             CCCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC--CCcEEEEEehHHHHHHHHhhhh
Q 025613          180 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA--DGKLVGIITRGNVVRAALQIKH  243 (250)
Q Consensus       180 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~--~g~~vGiIt~~Dil~~l~~~~~  243 (250)
                      ...+++++|.++++++++++++.+|+++|.+++++.+||+|+  ++.++|+++..|++.++.....
T Consensus         9 ~~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~   74 (160)
T d2d4za3           9 YNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRIS   74 (160)
T ss_dssp             SSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHH
T ss_pred             cceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccc
Confidence            467899999999999999999999999999999999999984  4789999999999999877543

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=6.7e-08  Score=72.75  Aligned_cols=109  Identities=12%  Similarity=0.063  Sum_probs=76.4

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCc-----ccccccccccCCCCCCCCC------ceeccccccCCceeEeC
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS-----AVFASGTLTANSAAPSSGV------YTVGDFMTTKEELHVVK   99 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~v~~~m~~~~~~~~v~   99 (250)
                      .++++..+.++.+++..|.+... .++......     +...+..............      ......|..  +++++.
T Consensus        21 ~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~~~~--~~~~v~   98 (145)
T d2v8qe1          21 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--GVLKCY   98 (145)
T ss_dssp             SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC--SCCEEC
T ss_pred             CceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhccchhhhccC--CCeEEC
Confidence            46788999999999999987776 444443221     1111211111111111122      233445555  788999


Q ss_pred             CCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhh
Q 025613          100 PTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  147 (250)
Q Consensus       100 ~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~  147 (250)
                      +++++.++     ++.|.+++++++||+|++|+++|+||..||++++.
T Consensus        99 ~~~~l~~~-----~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          99 LHETLEAI-----INRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             TTSBHHHH-----HHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHH-----HHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence            99999999     99999999999999999999999999999998754

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.66  E-value=2e-08  Score=74.37  Aligned_cols=60  Identities=20%  Similarity=0.325  Sum_probs=54.6

Q ss_pred             cccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEehHHHHHHHHhhh
Q 025613          183 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV--DADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       183 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVV--d~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                      .++++|+++|+++++++++.+|++.|.+++.+++||+  |++++++|+++..|+++++.+..
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~   63 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL   63 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccc
Confidence            5889999999999999999999999999999999999  44588999999999999876644

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=3.6e-08  Score=73.97  Aligned_cols=57  Identities=16%  Similarity=0.205  Sum_probs=51.8

Q ss_pred             ccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHhhh
Q 025613          186 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK  242 (250)
Q Consensus       186 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~~~  242 (250)
                      .+|..++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++.+.+..
T Consensus        13 ~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~   69 (140)
T d2nyca1          13 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI   69 (140)
T ss_dssp             CCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-
T ss_pred             CccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhcc
Confidence            356788999999999999999999999999999999999999999999999886554

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.62  E-value=4.7e-09  Score=77.18  Aligned_cols=102  Identities=20%  Similarity=0.190  Sum_probs=51.8

Q ss_pred             eecCCCChhHHHHHhhhcCC-eeeeeCC-----C--ccc-ccccccccCCCCCCCCCceeccccccCCceeEeCCCCchh
Q 025613           35 CLLLSRPGCRVFSVLATSSD-RVSALRR-----S--SAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD  105 (250)
Q Consensus        35 ~~~~~~~~~~v~~~~~~~~~-~~~~~~~-----~--~~~-~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~v~  105 (250)
                      ++..+.++.++...|.++.. .++....     .  ... ..+..  .  ........++..+|...++++++.+++++.
T Consensus         8 tv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~--~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   83 (120)
T d1jr1a4           8 VLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDID--F--LKEEEHDRFLEEIMTKREDLVVAPAGITLK   83 (120)
T ss_dssp             C----CCCC--CCBC---------------CTTCCC--------------------------CCSBTTTSCCEETTCCHH
T ss_pred             EECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeee--e--hhccccCceeEEEEeeccCceEECCCCCHH
Confidence            55667777777777766554 4443321     0  111 11110  0  011122345666665555789999999999


Q ss_pred             cccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhh
Q 025613          106 EAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  145 (250)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~  145 (250)
                      +|     +++|.+++++++||+|++|+++|+||..|+++.
T Consensus        84 ~a-----~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          84 EA-----NEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             HH-----HHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             HH-----HHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            99     999999999999999999999999999999864

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.60  E-value=3.2e-08  Score=75.45  Aligned_cols=110  Identities=18%  Similarity=0.238  Sum_probs=77.2

Q ss_pred             ccceecCCCChhHHHHHhhhcCC-eeeeeCCCcc-----cccccccccCCCCCCCCCceeccccccC----CceeEeCCC
Q 025613           32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSA-----VFASGTLTANSAAPSSGVYTVGDFMTTK----EELHVVKPT  101 (250)
Q Consensus        32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~m~~~----~~~~~v~~~  101 (250)
                      .+.++..+.++.+++..|.+... .++...+..-     ...+...............++.++|...    .++.++.++
T Consensus        13 ~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~   92 (153)
T d2ooxe2          13 NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRAT   92 (153)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCCSSCCCEECTT
T ss_pred             CCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeecccCCCeEECCC
Confidence            46778999999999999988876 5554443211     1111110111011122334566665431    157789999


Q ss_pred             CchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhh
Q 025613          102 TTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  146 (250)
Q Consensus       102 ~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~  146 (250)
                      +++.++     ++.|.+++.+.+||+|++|+++|+||..|+++++
T Consensus        93 ~~l~~~-----~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~  132 (153)
T d2ooxe2          93 DRLDGI-----FDAIKHSRVHRLFVVDENLKLEGILSLADILNYI  132 (153)
T ss_dssp             CBHHHH-----HHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             CcHHHH-----HHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHH
Confidence            999999     9999999999999999999999999999999864

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.40  E-value=1.6e-07  Score=73.06  Aligned_cols=61  Identities=18%  Similarity=0.214  Sum_probs=54.2

Q ss_pred             CCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHHHHHhh
Q 025613          181 GKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVRAALQI  241 (250)
Q Consensus       181 ~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~~vGiIt~~Dil~~l~~~  241 (250)
                      ...+.++|.  ..++++++++++.+|+..|.++++..+||+|+ +++++|+||..|+++.+...
T Consensus        19 ~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~   82 (179)
T d2ooxe1          19 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYY   82 (179)
T ss_dssp             HSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHH
T ss_pred             CCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhc
Confidence            457889996  46789999999999999999999999999984 58999999999999987654

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.3e-07  Score=70.69  Aligned_cols=61  Identities=13%  Similarity=0.233  Sum_probs=54.4

Q ss_pred             CCCCceeccccccCCceeEeCCCCchhcccchhHHHHHHHcCCCeeEEEeCCCcEEEEEehHHHHhhhh
Q 025613           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEAFVPTALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  147 (250)
Q Consensus        79 ~~~~~~v~~~m~~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~~~~~~Vvd~~g~~~GiVt~~dL~~~~~  147 (250)
                      .....+++++|.+  ++.++.+++++.++     +++|.+++.+.+||++ +|+++|+||..|+++++.
T Consensus        96 ~~~~~~v~~im~~--~~~tv~~~~~l~~v-----~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~  156 (169)
T d2j9la1          96 TPPTLKLRNILDL--SPFTVTDLTPMEIV-----VDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIA  156 (169)
T ss_dssp             CCCCEECGGGEES--SCCEEETTSBHHHH-----HHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cccccchhhhccC--CCEEECCCCcHHHH-----HHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            3445678999998  89999999999999     9999999999999987 689999999999998754

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=5.8e-07  Score=68.33  Aligned_cols=64  Identities=19%  Similarity=0.254  Sum_probs=55.3

Q ss_pred             CCccccccc--CCCeEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHHHHHHHhhhhh
Q 025613          181 GKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVRAALQIKHA  244 (250)
Q Consensus       181 ~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~~vGiIt~~Dil~~l~~~~~~  244 (250)
                      ...+.|+|.  .++++++.++++.+|++.|.++++..+||+++ +++++|+||..|++..+......
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~   78 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKS   78 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHH
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhcccc
Confidence            457899994  35688999999999999999999999999974 68899999999999988765544

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=90.69  E-value=0.00038  Score=54.68  Aligned_cols=60  Identities=10%  Similarity=0.102  Sum_probs=52.7

Q ss_pred             CCcccccccCCCeEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHHHHHHHh
Q 025613          181 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ  240 (250)
Q Consensus       181 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~~vGiIt~~Dil~~l~~  240 (250)
                      ...+.++|.....++..+++-+.+.++|.+.+.+.+||++++++.+|.||..|+.++-.+
T Consensus       136 ~~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A~~~  195 (213)
T d1lkvx_         136 QLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQK  195 (213)
T ss_dssp             HHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHHHHH
T ss_pred             hHHHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHHHHH
Confidence            456788888888889999999999999999999999999999999999999998665433