Citrus Sinensis ID: 025769

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MLSSSYFSVGNIMRSSINIPVYFFVFPVFFSLLRLQTMTNLRSFGRFGKTTEIDEPEHDNPQQHVLDVAPLNSMPYIGPPTPPSDFGSTSRKQETEAAENVGPAMVFLPSYSTREELDNIIAVTKTGVALTGVAALGKVGTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKSVA
cccccccccccEEEccccccEEEEEHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccEEEccccccHHHHHHHHHHHcccEEEEcccccccccccEEEEEEEEcccEEEEEEEcccccccccEEEEEEccccEEEEEEEEEEccEEEEEEccEEEEEEEEcccccEEEEEEEcccccccccEEEEEccccEEEEEEEcccc
ccccccEEHcHHHHccccccEEEEHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccEEEEcccccccccccccccccccccccccccccHccccccEEcccccccHHHHHHHHHHccccEEEEcccccccccccEEEEEEcccccEEEEEEEccccccccccEEEEEccccEEEEEEEEEccccEEEccccEEEEEEEcccccccEEEEEEccccccHHHcccccccccEEEEEEEcccc
mlsssyfsvgnimrssinipvyFFVFPVFFSLLRLQTMTNLRsfgrfgktteidepehdnpqqhvldvaplnsmpyigpptppsdfgstsrkQETEAaenvgpamvflpsystreeLDNIIAVTKTGVALTGVAALgkvgtgigavdiaesddsyafrvalpgvardekdftcdidpdgkvtikgvtttgektVCKQNQVFKMLtqnlsppghfsisfklpgpvntedftgkfgtdgileglvkksva
MLSSSYFSVGNIMRSSINIPVYFFVFPVFFSLLRLQTMTNLRSFGRFGKTTEIDEPEHDNPQQHVLDVAPLNSMPYIGPPTPPSDFGSTSRKQETEAAENVGPAMVFLPSYSTREELDNIIAVTKTGVALTGVAALGKVGTGIGAVDIAESDDSYAFRVALpgvardekdftcdidpdgkvtikgvtttgektvcKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFTgkfgtdgileglvkksva
MLSSSYFSVGNIMRSSINIpvyffvfpvffSLLRLQTMTNLRSFGRFGKTTEIDEPEHDNPQQHVLDVAPLNSMPYIGPPTPPSDFGSTSRKQETEAAENVGPAMVFLPSYSTREELDNIIAVTKTGVALTGVAALGKVGTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDgkvtikgvtttgektvCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKSVA
*****YFSVGNIMRSSINIPVYFFVFPVFFSLLRLQTMTNLRSFGRFG*******************************************************AMVFLPSYSTREELDNIIAVTKTGVALTGVAALGKVGTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGL******
****SYF*VGNIMRSSINIPVYFFVFPVFFSLLRLQTMTNLRSF**************************LNSMPYIGP*****************************PSYSTREELDNIIAVTKTGVAL***A*****GTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVT**********************TQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKS**
********VGNIMRSSINIPVYFFVFPVFFSLLRLQTMTNLRSFGRFGKTTEIDEPEHDNPQQHVLDVAPLNSMPYIGPPTP****************ENVGPAMVFLPSYSTREELDNIIAVTKTGVALTGVAALGKVGTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKSVA
***SSYFSVGNIMRSSINIPVYFFVFPVFFSLLRLQTMTNLRSFGRFGKTTEIDEPEHDNPQQHVLDVAPLNSMPYIGPPTP*****************NVGPAMVFLPSYSTREELDNIIAVTKTGVALTGVAALGKVGTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKSV*
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLSSSYFSVGNIMRSSINIPVYFFVFPVFFSLLRLQTMTNLRSFGRFGKTTEIDEPEHDNPQQHVLDVAPLNSMPYIGPPTPPSDFGSTSRKQETEAAENVGPAMVFLPSYSTREELDNIIAVTKTGVALTGVAALGKVGTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKSVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query248
30695845206 alpha-crystallin domain of heat shock pr 0.721 0.868 0.657 9e-64
12322161197 hypothetical protein [Arabidopsis thalia 0.721 0.908 0.657 1e-63
449442837204 PREDICTED: uncharacterized protein LOC10 0.782 0.950 0.594 5e-63
297848066206 hypothetical protein ARALYDRAFT_892730 [ 0.721 0.868 0.647 9e-63
224125302220 predicted protein [Populus trichocarpa] 0.762 0.859 0.572 4e-58
28558785172 heat shock protein-like protein [Cucumis 0.689 0.994 0.616 1e-55
255542588234 conserved hypothetical protein [Ricinus 0.717 0.760 0.557 1e-54
359487731202 PREDICTED: uncharacterized protein LOC10 0.758 0.930 0.581 6e-54
296088310 751 unnamed protein product [Vitis vinifera] 0.625 0.206 0.612 2e-50
225450997235 PREDICTED: uncharacterized protein LOC10 0.625 0.659 0.612 5e-50
>gi|30695845|ref|NP_175882.2| alpha-crystallin domain of heat shock protein-containing protein [Arabidopsis thaliana] gi|27754667|gb|AAO22777.1| unknown protein [Arabidopsis thaliana] gi|28393995|gb|AAO42405.1| unknown protein [Arabidopsis thaliana] gi|332195035|gb|AEE33156.1| alpha-crystallin domain of heat shock protein-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 123/187 (65%), Positives = 151/187 (80%), Gaps = 8/187 (4%)

Query: 60  NPQQHVLDVAPLNSMPYIGPPTPPSDFGSTSRKQETEAAENVG-PAMVFLPSYSTREELD 118
           NPQ  +L+V PLNSMPYIGP T      S S  +  ++ E VG PAM+FLPS S+  E  
Sbjct: 22  NPQ--ILEVTPLNSMPYIGPVT----HASMSSNRMNDSVEKVGGPAMIFLPSDSS-SEFS 74

Query: 119 NIIAVTKTGVALTGVAALGKVGTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPD 178
           N+I+ TKTGVALTG AA+GK+G  IG VDIAES+DSY FRVALPGV+RDEK+F+C+I+PD
Sbjct: 75  NLISQTKTGVALTGSAAMGKIGLTIGLVDIAESEDSYYFRVALPGVSRDEKEFSCEIEPD 134

Query: 179 GKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGI 238
           GK+ IKG TTTGE+TVCK NQ+FKMLTQNL PPGHF+I+F+LPGPV+ E+F G FG+DG+
Sbjct: 135 GKIMIKGATTTGEQTVCKHNQIFKMLTQNLCPPGHFTINFQLPGPVSNEEFNGNFGSDGV 194

Query: 239 LEGLVKK 245
           LEG+VKK
Sbjct: 195 LEGVVKK 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|12322161|gb|AAG51117.1|AC069144_14 hypothetical protein [Arabidopsis thaliana] gi|3776577|gb|AAC64894.1| T22H22.24 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449442837|ref|XP_004139187.1| PREDICTED: uncharacterized protein LOC101211821 [Cucumis sativus] gi|449518677|ref|XP_004166363.1| PREDICTED: uncharacterized protein LOC101225250 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297848066|ref|XP_002891914.1| hypothetical protein ARALYDRAFT_892730 [Arabidopsis lyrata subsp. lyrata] gi|297337756|gb|EFH68173.1| hypothetical protein ARALYDRAFT_892730 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224125302|ref|XP_002319552.1| predicted protein [Populus trichocarpa] gi|222857928|gb|EEE95475.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|28558785|gb|AAO45756.1| heat shock protein-like protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|255542588|ref|XP_002512357.1| conserved hypothetical protein [Ricinus communis] gi|223548318|gb|EEF49809.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359487731|ref|XP_002280921.2| PREDICTED: uncharacterized protein LOC100261344 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225450997|ref|XP_002280890.1| PREDICTED: uncharacterized protein LOC100249373 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query248
TAIR|locus:2010995206 AT1G54850 "AT1G54850" [Arabido 0.721 0.868 0.593 4.3e-54
TAIR|locus:2010945349 AT1G54840 "AT1G54840" [Arabido 0.435 0.309 0.462 4.2e-24
TAIR|locus:2037380463 AT1G20870 "AT1G20870" [Arabido 0.467 0.250 0.370 4.9e-17
TAIR|locus:2011696143 AT1G76440 "AT1G76440" [Arabido 0.471 0.818 0.381 3.3e-15
TAIR|locus:2010995 AT1G54850 "AT1G54850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 111/187 (59%), Positives = 137/187 (73%)

Query:    60 NPQQHVLDVAPLNSMPYIGPPTPPSDFGSTSRKQETEAAENVG-PAMVFLPSYSTREELD 118
             NPQ  +L+V PLNSMPYIGP T      S S  +  ++ E VG PAM+FLPS S+  E  
Sbjct:    22 NPQ--ILEVTPLNSMPYIGPVT----HASMSSNRMNDSVEKVGGPAMIFLPSDSS-SEFS 74

Query:   119 NIIAVTKTGVALTGVAALGKVGTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPD 178
             N+I+ TKTGVALTG AA+GK+G  IG VDIAES+DSY FRVALPGV+RDEK+F+C+I+PD
Sbjct:    75 NLISQTKTGVALTGSAAMGKIGLTIGLVDIAESEDSYYFRVALPGVSRDEKEFSCEIEPD 134

Query:   179 XXXXXXXXXXXXXXXXCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGI 238
                             CK NQ+FKMLTQNL PPGHF+I+F+LPGPV+ E+F G FG+DG+
Sbjct:   135 GKIMIKGATTTGEQTVCKHNQIFKMLTQNLCPPGHFTINFQLPGPVSNEEFNGNFGSDGV 194

Query:   239 LEGLVKK 245
             LEG+VKK
Sbjct:   195 LEGVVKK 201
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005730 "nucleolus" evidence=IDA
GO:0009408 "response to heat" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2010945 AT1G54840 "AT1G54840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037380 AT1G20870 "AT1G20870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011696 AT1G76440 "AT1G76440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT1G54850
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- nucleolus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Heat shock protein Hsp20 (InterPro-IPR002068), HSP20-like chaperone (InterPro-IPR008978); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G54840.1); Has 35 Blast hits to 35 proteins in 7 species- Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (206 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT2G03780
translin family protein; translin family protein; FUNCTIONS IN- sequence-specific DNA binding, [...] (287 aa)
   •    0.479
AT5G52370
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (142 aa)
   •    0.430
PAE1
PAE1; endopeptidase/ peptidase/ threonine-type endopeptidase; Encodes alpha5 subunit of 20s pro [...] (237 aa)
   •    0.424
AT3G11100
transcription factor; transcription factor; FUNCTIONS IN- transcription factor activity; INVOLV [...] (249 aa)
   •    0.414
AT2G34160
nucleic acid binding; nucleic acid binding; FUNCTIONS IN- nucleic acid binding; INVOLVED IN- bi [...] (130 aa)
   •    0.414

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 6e-12
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 2e-08
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 2e-04
pfam00011101 pfam00011, HSP20, Hsp20/alpha crystallin family 4e-04
cd0647193 cd06471, ACD_LpsHSP_like, Group of bacterial prote 0.002
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information 
 Score = 59.5 bits (145), Expect = 6e-12
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 11/94 (11%)

Query: 147 DIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQ 206
           D+ E+DD+Y     LPG  +++     +   DG +TI G     E+         +   +
Sbjct: 1   DVYETDDAYVVEADLPGFKKEDIKVEVE---DGVLTISGEREEEEEEE-------ENYLR 50

Query: 207 NLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILE 240
                G FS SF+LP  V+ +        +G+L 
Sbjct: 51  RERSYGSFSRSFRLPEDVDPDKIKASL-ENGVLT 83

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family Back     alignment and domain information
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 248
PRK11597142 heat shock chaperone IbpB; Provisional 99.93
PRK10743137 heat shock protein IbpA; Provisional 99.92
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.92
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.91
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.91
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.88
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.85
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.85
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.84
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.83
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.83
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.82
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.82
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.82
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.8
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.77
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.77
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.77
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.64
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.63
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.45
KOG3591173 consensus Alpha crystallins [Posttranslational mod 99.34
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.17
cd0646384 p23_like Proteins containing this p23_like domain 98.94
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 98.8
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.68
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 98.26
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 97.95
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 97.76
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 97.59
cd0648887 p23_melusin_like p23_like domain similar to the C- 97.53
cd0646892 p23_CacyBP p23_like domain found in proteins simil 97.43
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 97.41
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 97.09
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 96.48
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 96.11
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 95.78
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 95.3
KOG1309 196 consensus Suppressor of G2 allele of skp1 [Signal 95.09
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 90.6
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 89.11
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information 
Probab=99.93  E-value=1.8e-25  Score=186.84  Aligned_cols=116  Identities=18%  Similarity=0.297  Sum_probs=95.9

Q ss_pred             eecCCCChHHHHHHHHHhccCccccccccCCCCCCCcceeeEEE-cCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEE
Q 025769          107 FLPSYSTREELDNIIAVTKTGVALTGVAALGKVGTGIGAVDIAE-SDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKG  185 (248)
Q Consensus       107 ~~p~~p~~~e~d~l~~~~~~~~~ltgsaa~g~~~~~~P~vDI~E-~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsG  185 (248)
                      +-||.+.+..++++++++...+          ...+.|++||+| ++++|+|.++|||++|+||+|++   ++|.|+|+|
T Consensus         6 ~~~~~~~~~~~d~l~~~~~~~~----------~~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v---~~~~LtI~g   72 (142)
T PRK11597          6 LSPLLRQWIGFDKLANALQNAG----------ESQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQL---EGTRLTVKG   72 (142)
T ss_pred             cchhhcccccHHHHHHHhcccC----------ccCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEE---ECCEEEEEE
Confidence            3455555788888887654321          124569999998 57899999999999999999999   899999999


Q ss_pred             EEeccceeeecCccEEEEEeeccCCCeEEEEEEECCCCcccCceEEEeCCCCEEEEEEeee
Q 025769          186 VTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKKS  246 (248)
Q Consensus       186 er~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~LP~~VD~e~I~A~fr~nGVLtItlPK~  246 (248)
                      +++.  +  .++.+|+++|++    +|+|+|+|.||.+||.+  +|+| +||||+|+|||.
T Consensus        73 e~~~--~--~~~~~~~~~Er~----~g~F~R~f~LP~~vd~~--~A~~-~nGVL~I~lPK~  122 (142)
T PRK11597         73 TPEQ--P--EKEVKWLHQGLV----NQPFSLSFTLAENMEVS--GATF-VNGLLHIDLIRN  122 (142)
T ss_pred             EEcc--c--cCCCcEEEEEEe----CcEEEEEEECCCCcccC--cCEE-cCCEEEEEEecc
Confidence            9764  1  346779887765    89999999999999998  6999 899999999996

>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query248
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 2e-09
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 7e-09
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 7e-09
1gme_A151 Heat shock protein 16.9B; small heat shock protein 6e-08
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 5e-05
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 1e-04
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure
 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 15/103 (14%), Positives = 37/103 (35%), Gaps = 14/103 (13%)

Query: 145 AVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKML 204
            VD+ E          L G   +++     +    ++ I+      E+ + +    +   
Sbjct: 26  PVDMYEEGGYLVVVADLAGF--NKEKIKARVSGQNELIIE-----AEREITEPGVKYLT- 77

Query: 205 TQNLSPPGHFSISFKLPGPVNTE-DFTGKFGTDGILEGLVKKS 246
                 P +     +LP  V  + + +GK+  +G+L   +  +
Sbjct: 78  ----QRPKYVRKVIRLPYNVAKDAEISGKY-ENGVLTIRIPIA 115
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query248
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.95
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.93
4fei_A102 Heat shock protein-related protein; stress respons 99.93
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.92
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.91
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.87
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.86
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.86
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.83
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 99.82
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.79
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.77
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 99.01
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 99.01
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 97.74
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 97.66
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 97.59
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 97.58
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 97.39
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 97.24
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 96.95
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 96.93
2o30_A131 Nuclear movement protein; MCSG, structural genomic 96.92
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 96.77
3igf_A374 ALL4481 protein; two-domained protein consisting o 96.75
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 96.67
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 96.54
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
Probab=99.95  E-value=2.8e-27  Score=182.30  Aligned_cols=98  Identities=21%  Similarity=0.370  Sum_probs=87.1

Q ss_pred             CCcceeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEEC
Q 025769          141 TGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFKL  220 (248)
Q Consensus       141 ~~~P~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~L  220 (248)
                      .|.|++||+|++++|+|.++|||++++||+|++   +++.|+|+|+++...  ..++.+|+++|    +.+|+|+|+|.|
T Consensus         2 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~---~~~~L~I~g~~~~~~--~~~~~~~~~~e----r~~g~f~r~~~L   72 (100)
T 3gla_A            2 QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQM---DKGILSIRGERKSES--STETERFSRIE----RRYGSFHRRFAL   72 (100)
T ss_dssp             CSCCCEEEEECSSEEEEEEECTTSCGGGCEEEE---ETTEEEEEEEECCGG--GSSGGGEEEEC----CCCEEEEEEEEC
T ss_pred             CccCcEEEEECCCEEEEEEECCCCCHHHEEEEE---ECCEEEEEEEEcCcC--ccCCccEEEEe----ecceEEEEEEEC
Confidence            589999999999999999999999999999999   789999999998633  34567787764    449999999999


Q ss_pred             CCCcccCceEEEeCCCCEEEEEEeeecC
Q 025769          221 PGPVNTEDFTGKFGTDGILEGLVKKSVA  248 (248)
Q Consensus       221 P~~VD~e~I~A~fr~nGVLtItlPK~ea  248 (248)
                      |.+||.++|+|+| +||||+|++||.++
T Consensus        73 P~~vd~~~i~A~~-~~GvL~I~~pK~~~   99 (100)
T 3gla_A           73 PDSADADGITAAG-RNGVLEIRIPKRPA   99 (100)
T ss_dssp             CTTBCTTSCEEEE-ETTEEEEEEEBC--
T ss_pred             CCCcChHHeEEEE-eCCEEEEEEecCCC
Confidence            9999999999999 89999999999864
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 248
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 1e-09
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 1e-05
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 9/106 (8%)

Query: 140 GTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQ 199
           G G   + I E D        LPGV +++                 +    +++     +
Sbjct: 7   GKGFMPISIIEGDQHIKVIAWLPGVNKEDIILN--------AVGDTLEIRAKRSPLMITE 58

Query: 200 VFKMLTQNLSPPGHFSISFKLPGPVNTEDFTGKFGTDGILEGLVKK 245
             +++   +        + KLP  V  E+ + KF  +G+L  ++ K
Sbjct: 59  SERIIYSEIPEEEEIYRTIKLPATVKEENASAKF-ENGVLSVILPK 103
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query248
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.92
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.9
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 98.23
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 97.0
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 96.82
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 96.53
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 95.77
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.92  E-value=1.2e-25  Score=183.74  Aligned_cols=99  Identities=20%  Similarity=0.356  Sum_probs=84.8

Q ss_pred             CCCcceeeEEEcCCeEEEEEEcCCCCCCCeEEEEEecCCCeEEEEEEEeccceeeecCccEEEEEeeccCCCeEEEEEEE
Q 025769          140 GTGIGAVDIAESDDSYAFRVALPGVARDEKDFTCDIDPDGKVTIKGVTTTGEKTVCKQNQVFKMLTQNLSPPGHFSISFK  219 (248)
Q Consensus       140 ~~~~P~vDI~E~ed~yvI~vdLPGV~keDIeVsv~I~~d~~L~IsGer~~~e~~~~~~~~y~r~e~r~e~~~G~F~Rs~~  219 (248)
                      +.+.|++||.|++++|+|+++|||++++||+|++  ++++.|+|+|+++...  ..++.+|+..    |+.+|.|+|+|.
T Consensus        39 ~~~~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v--~~~~~l~i~~~~~~~~--~~~~~~~~~~----e~~~~~f~r~~~  110 (150)
T d1gmea_          39 AFANARMDWKETPEAHVFKADLPGVKKEEVKVEV--EDGNVLVVSGERTKEK--EDKNDKWHRV----ERSSGKFVRRFR  110 (150)
T ss_dssp             HHGGGCEEEEECSSEEEEEEECTTCCGGGEEEEE--ETTTEEEEEECCCCCC--CCTTCEEEEC----CCCCCCEEEEEE
T ss_pred             ccCCCceeEEECCCEEEEEEEeCCCccCCEEEEE--EEccceeEEEEEeccc--ccccceeeee----eeccceEEEEEE
Confidence            3457899999999999999999999999999888  2345789999987632  3556777764    455999999999


Q ss_pred             CCCCcccCceEEEeCCCCEEEEEEeeec
Q 025769          220 LPGPVNTEDFTGKFGTDGILEGLVKKSV  247 (248)
Q Consensus       220 LP~~VD~e~I~A~fr~nGVLtItlPK~e  247 (248)
                      ||.+||.++|+|+| +||||+|++||.+
T Consensus       111 LP~~vd~~~i~A~~-~nGvL~I~lpK~~  137 (150)
T d1gmea_         111 LLEDAKVEEVKAGL-ENGVLTVTVPKAE  137 (150)
T ss_dssp             CSSCCCGGGCEEEE-ETTEEEEEEECCC
T ss_pred             CCCCeeeceeEEEE-ECCEEEEEEEcCC
Confidence            99999999999999 8999999999975
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure