Citrus Sinensis ID: 025777

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MVTASSISFGANTTFTSSPIPKTKPLFIPHSLKFTTGNGRAAVTFQRAVSVIPKATSADSRATKEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTGMIASRN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHccccEEEcccHHHHHHHHcccccccccEEcHHHHHHHHccccEEEEEccccEEEEccccEEEEEcccccHHHHHHcccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccccHHccHHHHHHccccccccccHHHHHHcccccccccccccccccccccEEEEEcccccccccHccHHHHHHHcccEEEEcccHHHHHHHHHHHccccccEccHHHHHHHHccccEEEEEccccEEEcccccEEEEEcccccHHHHHcHcHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mvtassisfganttftsspipktkplfiphslkfttgngraAVTFQRAVSvipkatsadsratkeptatfHGLCyvvgdnidtdqiipaeyltlvpsnpdeyeklgsyaliglpatyttrfidenetkTKYKIIIAggnfgcgssrehapVALGAAGCSAVVAESYARIFfrnsvatgeiypldsearlceecstgdvVTIEIAESRlinhttgkeyklkpigdlgpvidagGIFAYARKtgmiasrn
Flexible Loop (DISEMBL)
mvtassisfganttftsspipktkPLFIPHSLKFTTGNGRAAVTFQRAVSvipkatsadsratkeptatfHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVtieiaesrlinhttgkeyklkpigdLGPVIDAGGIFAYARKTGMIASRN
Low Complexity Region (SEG)
MVTASSISFGANTTFTSSPIPKTKPLFIPHSLKFTTGNGRAAVTFQRAVSVIPKATSADSRATKEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTGMIASRN
Disordered region (IsUnstruct)
************************PLFIPHSLKFTTGNGRAAVTFQRAVSVIP*************TATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTG******
Disordered Region (DISOPRED)
*********GANTTF******************************************************FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARK*GM*****
Disordered Region (DISEMBL)
********FGANTTFTSSPIPKTKPLFIPHSLKFTTGNGRAAVTFQRAVSVIP***********EPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTGMIASRN
Disordered Region (DISPRO)
*************T**************************************PKATSADSRATKEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTG******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTASSISFGANTTFTSSPIPKTKPLFIPHSLKFTTGNGRAAVTFQRAVSVIPKATSADSRATKEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTGMIASRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
B5YHE5	168	3-isopropylmalate dehydra	yes	no	0.625	0.922	0.423	8e-28
Q9WZ25	166	3-isopropylmalate dehydra	yes	no	0.645	0.963	0.405	1e-26
Q8U2A0	164	3-isopropylmalate dehydra	yes	no	0.616	0.932	0.408	7e-25
Q9UZ06	164	3-isopropylmalate dehydra	yes	no	0.616	0.932	0.396	7e-25
O67399	168	3-isopropylmalate dehydra	no	no	0.637	0.940	0.389	9e-25
Q7M887	167	3-isopropylmalate dehydra	yes	no	0.620	0.922	0.394	2e-24
B9L5K2	166	3-isopropylmalate dehydra	yes	no	0.625	0.933	0.403	6e-24
B9MLV3	166	3-isopropylmalate dehydra	yes	no	0.629	0.939	0.380	8e-24
Q30WD2	167	3-isopropylmalate dehydra	yes	no	0.633	0.940	0.377	2e-23
Q30RK1	167	3-isopropylmalate dehydra	yes	no	0.625	0.928	0.382	2e-23

>sp|B5YHE5|LEUD_THEYD 3-isopropylmalate dehydratase small subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=leuD PE=3 SV=1

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 100/170 (58%), Gaps = 15/170 (8%)

Query: 72  GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
           G  +  GDNIDTD IIPA YL    S+P E   L  + +    +++ ++           
Sbjct: 5   GKVWKFGDNIDTDAIIPARYLNT--SDPKE---LAKHVMEDADSSFPSKV-------KPG 52

Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
            IIIAG NFGCGSSREHAP+A+ A+G  AV+A+SYARIFFRN+   G   P+     L +
Sbjct: 53  DIIIAGRNFGCGSSREHAPIAIKASGIRAVIAKSYARIFFRNAFNIG--LPIFEVPELID 110

Query: 192 ECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
           E + GD V I++   ++IN T GK+Y  KPI   +  +I AGG+  + +K
Sbjct: 111 ETNEGDEVEIDMNSGQIINLTKGKKYNTKPIPPFMQELIKAGGLVEWTKK 160

Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.
Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) (taxid: 289376)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 3EC: 3

>sp|Q9WZ25|LEUD2_THEMA 3-isopropylmalate dehydratase small subunit 2 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=leuD2 PE=3 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 100/175 (57%), Gaps = 15/175 (8%)

Query: 67  TATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENE 126
                G  +V GDN++TD+IIPA YL    S+P E   L  Y +      +  R      
Sbjct: 2   VVKIKGKVFVFGDNVNTDEIIPARYLN--TSDPQE---LAKYCMEDARPGFGRR------ 50

Query: 127 TKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE 186
              K  II+AG NFGCGSSREHAPVA+ AAG S V+A+S+ARIFFRN++  G   P+  E
Sbjct: 51  DDIKGSIIVAGENFGCGSSREHAPVAIKAAGISCVIAKSFARIFFRNAINIG--LPI-VE 107

Query: 187 ARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
            +  +E   GD+  +++    + N T GKEY+++P  + L  +++AGG   Y  K
Sbjct: 108 LKEADEFEEGDIAEVDLENGVVRNLTKGKEYRIRPYPEFLMKIMEAGGWLEYCLK 162

Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q8U2A0|LEUD1_PYRFU 3-isopropylmalate dehydratase small subunit 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=leuD1 PE=3 SV=1

 Score =  114 bits (285), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/174 (40%), Positives = 98/174 (56%), Gaps = 21/174 (12%)

Query: 71  HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
            G  +  GDNIDTD IIPA YL    S+P E   L  + L  L          + E + K
Sbjct: 4   RGRAWKYGDNIDTDVIIPARYLNT--SDPKE---LAQHVLEDL----------DPEFRYK 48

Query: 131 YK---IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA 187
            K   II+AG NFGCGSSREHAP+A+ AAG SAV+A+S+ARIF+RN++  G   P+    
Sbjct: 49  MKPGDIIVAGENFGCGSSREHAPLAIKAAGVSAVIAKSFARIFYRNAINIG--LPILEAP 106

Query: 188 RLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
              E   TGD + I+ +   + N T G+ Y   P  + +  +I AGG+  +A++
Sbjct: 107 EAVERIETGDEIEIDFSTGEIRNLTKGEVYHANPFPEFIMEIIKAGGLVEWAKR 160

Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q9UZ06|LEUD1_PYRAB 3-isopropylmalate dehydratase small subunit 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=leuD1 PE=3 SV=1

 Score =  114 bits (285), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 100/174 (57%), Gaps = 21/174 (12%)

Query: 71  HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
            G  +  GDNIDTD IIPA YL    S+P E   L  + L  L          + E ++K
Sbjct: 4   RGRAWKYGDNIDTDVIIPARYLNT--SDPKE---LAKHVLEDL----------DPEFRSK 48

Query: 131 YK---IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA 187
            K   II+AG NFGCGSSREHAP+A+ AAG S V+A+S+ARIF+RN++  G   P+    
Sbjct: 49  MKPGDIIVAGENFGCGSSREHAPLAIKAAGVSCVIAKSFARIFYRNAINIG--LPILEAP 106

Query: 188 RLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
           +  +   TGD + ++ +   + N T G+ Y+  P  D +  +I AGG+  +A++
Sbjct: 107 QAVDRIETGDELEVDFSSGEIRNLTKGEVYRANPFPDFIMEIIKAGGLVEWAKR 160

Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|O67399|LEUD_AQUAE 3-isopropylmalate dehydratase small subunit OS=Aquifex aeolicus (strain VF5) GN=leuD PE=3 SV=2

 Score =  114 bits (284), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 14/172 (8%)

Query: 70  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
           F G  +  GDN+DTDQIIPA YL    +  D YE L  + +     +    F  E++   
Sbjct: 5   FRGRVWKFGDNVDTDQIIPARYL----NTSDPYE-LAKHVM---EDSEHPEFAKEHKEGD 56

Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
              II+AG NFG GSSREHAP+A+  +G   V+A+S+ARIFFRN++  G   P+      
Sbjct: 57  ---IIVAGKNFGSGSSREHAPIAIKYSGVPVVIAKSFARIFFRNAINIG--LPIVEAPEA 111

Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKL-KPIGDLGPVIDAGGIFAYARK 240
            +E   GD + +++ +  + N  TGKEY+  K   +L  ++ AGG+ AYA++
Sbjct: 112 VDEIEHGDEIEVDLEKGVIKNLRTGKEYQATKFPKELQDILKAGGLMAYAKE 163

Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q7M887|LEUD_WOLSU 3-isopropylmalate dehydratase small subunit OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=leuD PE=3 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 16/170 (9%)

Query: 71  HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
            G  +  G+NIDTD II A YL     N  + + L S+ +      +   F       TK
Sbjct: 5   QGKVWKFGENIDTDLIIAARYL-----NTSDPQVLASHVMEDARPDFLQHF-------TK 52

Query: 131 YKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLC 190
              I+AG NFGCGSSREHAPVAL  AG SAV+A+S+ARIF+RNS  TG   P+  E +  
Sbjct: 53  GDFIVAGENFGCGSSREHAPVALKTAGVSAVIAKSFARIFYRNSFNTG--LPI-LEVKET 109

Query: 191 EECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
           +E   GD + +++A+  + N T  + Y  KPI   +  ++++GG+  +A+
Sbjct: 110 DEIREGDTLEVDMAQGTIKNLTRNQTYAFKPIPPFMMELLESGGLIEHAK 159

Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.

Wolinella succinogenes (taxid: 844)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B9L5K2|LEUD_NAUPA 3-isopropylmalate dehydratase small subunit OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=leuD PE=3 SV=1

 Score =  111 bits (277), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 99/171 (57%), Gaps = 16/171 (9%)

Query: 72  GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
           G  +  GDNIDTD IIPA YL    S+P E   L  + +      + ++           
Sbjct: 6   GRVWKFGDNIDTDLIIPARYLNT--SDPHE---LAKHVMEDADPEFPSKV-------RPG 53

Query: 132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
            II+AG NFG GSSREHAP+AL AAG +AV+A+S+ARIF+RNS   G   P+  E    +
Sbjct: 54  DIIVAGYNFGSGSSREHAPIALKAAGVAAVIAKSFARIFYRNSFNMG--LPI-FELLESD 110

Query: 192 ECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKT 241
           E + GD++ I++    + N  TGK+YK  PI + +  +I AGG+  +A++ 
Sbjct: 111 EINEGDLIKIDLDNGIIHNVDTGKDYKFTPIPEFMQELIAAGGLINFAKEM 161

Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.

Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) (taxid: 598659)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B9MLV3|LEUD_CALBD 3-isopropylmalate dehydratase small subunit OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=leuD PE=3 SV=1

 Score =  110 bits (275), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 95/171 (55%), Gaps = 15/171 (8%)

Query: 70  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
           F G  +   DNIDTD IIPA YL    S+P+E   L  + L  L   +  +         
Sbjct: 3   FKGKAHKYYDNIDTDVIIPARYLN--TSDPNE---LAKHCLEDLDKEFVNKV-------Q 50

Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
           K  I++AG NFGCGSSREHAP+A+ A G S V+A+S+ARIF+RN++  G   P+      
Sbjct: 51  KGDILVAGKNFGCGSSREHAPIAIKACGVSCVIAKSFARIFYRNAINIG--LPIVECEEA 108

Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
            +    GD V +++    + N T GKE+K KP  + +  ++ AGG+  + +
Sbjct: 109 VDGIEAGDEVEVDLVNGIIKNLTKGKEFKAKPFPEFMQNIMKAGGLIEFVK 159

Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.

Anaerocellum thermophilum (strain DSM 6725 / Z-1320) (taxid: 521460)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q30WD2|LEUD_DESDG 3-isopropylmalate dehydratase small subunit OS=Desulfovibrio desulfuricans (strain G20) GN=leuD PE=3 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 96/172 (55%), Gaps = 15/172 (8%)

Query: 70  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
           ++G    VGD+IDTD IIPA +L  V ++P    +LG+  + GL   + +R         
Sbjct: 3   YNGTARKVGDHIDTDAIIPARFL--VTTDP---AQLGANCMEGLEHGWVSRV-------Q 50

Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
           +  I++ G NFGCGSSREHAP+A+  AG   VVA S+ARIF+RN    G I  L      
Sbjct: 51  QGDIMVGGKNFGCGSSREHAPIAILGAGMPVVVAHSFARIFYRNGFNMGLI--LIEIGDD 108

Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
            +    GDV+++++   R+ NHTTG      P+   +  ++D GG+  Y R+
Sbjct: 109 ADRIHDGDVLSVDVENGRITNHTTGDVISCPPLPPFMHDILDKGGLVPYVRE 160

Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.

Desulfovibrio desulfuricans (strain G20) (taxid: 207559)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q30RK1|LEUD_SULDN 3-isopropylmalate dehydratase small subunit OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=leuD PE=3 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 97/175 (55%), Gaps = 20/175 (11%)

Query: 68  ATFHGLCYVVGDNIDTDQIIPAEYL-TLVPSNPDEYEKLGSYALIGLPATYTTRFIDENE 126
           A   G  +  G +IDTD II A YL T VP      E+L  + +      +  +      
Sbjct: 4   ANIDGKVWRFGKDIDTDLIIAARYLSTSVP------EELAKHVMEDADPQFVKKM----- 52

Query: 127 TKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATG-EIYPLDS 185
             +   II+AG NFGCGSSREHAP+AL AAG +AV+A ++ARIF+RN+   G  I+ L  
Sbjct: 53  --SSGDIIVAGENFGCGSSREHAPIALKAAGVAAVIAPTFARIFYRNAFNMGLPIFELQE 110

Query: 186 EARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYAR 239
            A + E    GD +++++    + N T+ K YK  PI   +  +IDAGG+  +A+
Sbjct: 111 SAEIAE----GDEISVDMNNGTITNKTSSKVYKFIPIPQFMQELIDAGGLMNFAQ 161

Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.

Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) (taxid: 326298)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
449469371	248	PREDICTED: 3-isopropylmalate dehydratase	0.875	0.875	0.757	7e-91
388498356	250	unknown [Lotus japonicus]	0.717	0.712	0.865	2e-83
356519371	246	PREDICTED: 3-isopropylmalate dehydratase	0.717	0.723	0.865	2e-83
356526195	245	PREDICTED: 3-isopropylmalate dehydratase	0.717	0.726	0.870	4e-83
388521689	248	unknown [Medicago truncatula]	0.790	0.790	0.765	1e-80
255579643	254	3-isopropylmalate dehydratase, putative	0.725	0.708	0.855	2e-80
116781026	291	unknown [Picea sitchensis]	0.778	0.663	0.744	3e-79
224284423	265	unknown [Picea sitchensis]	0.778	0.728	0.744	4e-79
225469374	253	PREDICTED: 3-isopropylmalate dehydratase	0.717	0.703	0.820	6e-79
193290702	252	putative 3-isopropylmalate dehydrogenase	0.778	0.765	0.772	4e-78

>gi|449469371|ref|XP_004152394.1| PREDICTED: 3-isopropylmalate dehydratase small subunit-like [Cucumis sativus] gi|449525429|ref|XP_004169720.1| PREDICTED: 3-isopropylmalate dehydratase small subunit-like [Cucumis sativus]

 Score =  339 bits (869), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 166/219 (75%), Positives = 185/219 (84%), Gaps = 2/219 (0%)

Query: 30  HSLKFTTGNGRAAVTFQRAVSVIP-KATSADSRATKEPTAT-FHGLCYVVGDNIDTDQII 87
            +LKF + +         AVS  P +  +   RAT  P++T FHGLCYVVGDNIDTDQII
Sbjct: 30  QTLKFRSSHSNFLFNLSIAVSHAPSRLATIIPRATASPSSTAFHGLCYVVGDNIDTDQII 89

Query: 88  PAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSRE 147
           PAEYLTLVPSNP EYEKLGSYALIGLP++Y+TR+++  E KTKY IIIAG NFGCGSSRE
Sbjct: 90  PAEYLTLVPSNPSEYEKLGSYALIGLPSSYSTRYVESEEMKTKYSIIIAGDNFGCGSSRE 149

Query: 148 HAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESR 207
           HAPVALGA+G  AVVAESYARIFFRNSVATGEIYPL+SE R+CEEC TGDVVTIE+AESR
Sbjct: 150 HAPVALGASGAVAVVAESYARIFFRNSVATGEIYPLESETRICEECKTGDVVTIELAESR 209

Query: 208 LINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTGMIAS 246
           LINHTTGKEYKLKPIGD GPVI+AGGIFAYARKTGMI+S
Sbjct: 210 LINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKTGMISS 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498356|gb|AFK37244.1| unknown [Lotus japonicus]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 154/178 (86%), Positives = 166/178 (93%)

Query: 70  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
           FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEY+KLGSYALIGLPA+Y  RF+   ETKT
Sbjct: 73  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYQKLGSYALIGLPASYPARFVQPGETKT 132

Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
           KY ++IAG NFGCGSSREHAPVALGA+G +AVVAESYARIFFRNSVATGE+YPL+SE RL
Sbjct: 133 KYSVLIAGANFGCGSSREHAPVALGASGAAAVVAESYARIFFRNSVATGEVYPLESEGRL 192

Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTGMIASR 247
           CEECSTGDVVTIE+AESRLINHTTGKEY LKPIGD GPVI+AGGIFAYARKTGMI +R
Sbjct: 193 CEECSTGDVVTIELAESRLINHTTGKEYSLKPIGDAGPVIEAGGIFAYARKTGMIPTR 250

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519371|ref|XP_003528346.1| PREDICTED: 3-isopropylmalate dehydratase small subunit-like [Glycine max]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 154/178 (86%), Positives = 165/178 (92%)

Query: 70  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
           FHGLCYVVGDNIDTDQIIPAEYLTLVPS PDEYEKLGSYAL+GLPATY  RF+D  ETKT
Sbjct: 69  FHGLCYVVGDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALVGLPATYAARFVDPGETKT 128

Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
           KY I+I G NFGCGSSREHAPVALGA+G +AVVAESYARIFFRNSVATGE+YPL+SE RL
Sbjct: 129 KYSIVIGGANFGCGSSREHAPVALGASGAAAVVAESYARIFFRNSVATGEVYPLESEGRL 188

Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTGMIASR 247
           CEEC+TGDVVTIE+ ESRLINHTTGKEY+LKPIGD GPVI+AGGIFAYARKTGMI SR
Sbjct: 189 CEECTTGDVVTIELGESRLINHTTGKEYRLKPIGDAGPVIEAGGIFAYARKTGMIPSR 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526195|ref|XP_003531705.1| PREDICTED: 3-isopropylmalate dehydratase small subunit-like [Glycine max]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 155/178 (87%), Positives = 165/178 (92%)

Query: 70  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
           FHGLCYVVGDNIDTDQIIPAEYLTLVPS PDEYEKLGSYALIGLPATY TRFI+  E KT
Sbjct: 68  FHGLCYVVGDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPATYATRFIEPGEIKT 127

Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
           KY I+I G NFGCGSSREHAPVALGA+G +AVVAESYARIFFRNSVATGE+YPL+SE RL
Sbjct: 128 KYAIVIGGANFGCGSSREHAPVALGASGAAAVVAESYARIFFRNSVATGEVYPLESEGRL 187

Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTGMIASR 247
           CEEC+TGDVVTIE+ ESRLINHTTGKEY+LKPIGD GPVI+AGGIFAYARKTGMI SR
Sbjct: 188 CEECTTGDVVTIELGESRLINHTTGKEYRLKPIGDAGPVIEAGGIFAYARKTGMIPSR 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521689|gb|AFK48906.1| unknown [Medicago truncatula]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 150/196 (76%), Positives = 171/196 (87%)

Query: 52  IPKATSADSRATKEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALI 111
           I +A +  S  T     +FHGLCYVVGDNIDTDQIIPAE+LTLVPSNPDEY+KLGS+ALI
Sbjct: 53  ITRAHAPPSPVTTTAATSFHGLCYVVGDNIDTDQIIPAEHLTLVPSNPDEYQKLGSFALI 112

Query: 112 GLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFF 171
           GLP +Y+ RF++  ETKTKY III G NFGCGSSREHAPVALGA+G +AVVAESYA+IFF
Sbjct: 113 GLPDSYSVRFVESGETKTKYSIIIGGANFGCGSSREHAPVALGASGAAAVVAESYAKIFF 172

Query: 172 RNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDA 231
           RNSVATGE+YPL+SE RLCEEC TGDVVT+E+ E+RLINH TGKEY+LKPIGD GPVI+A
Sbjct: 173 RNSVATGEVYPLESETRLCEECRTGDVVTVELEENRLINHRTGKEYQLKPIGDAGPVIEA 232

Query: 232 GGIFAYARKTGMIASR 247
           GGIFAYARKTGMI +R
Sbjct: 233 GGIFAYARKTGMIPTR 248

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579643|ref|XP_002530662.1| 3-isopropylmalate dehydratase, putative [Ricinus communis] gi|223529795|gb|EEF31731.1| 3-isopropylmalate dehydratase, putative [Ricinus communis]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/180 (85%), Positives = 167/180 (92%)

Query: 69  TFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETK 128
           TFHGLCYVVGDNIDTDQIIPAEYLTLVPSNP EYEKLGSYALIGLPA+Y TRF++ NE K
Sbjct: 74  TFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPAEYEKLGSYALIGLPASYKTRFMEPNEMK 133

Query: 129 TKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR 188
           TKY I+I G NFGCGSSREHAPVALGAAG +AVVAESYARIFFRNSVATGEIYPL++E R
Sbjct: 134 TKYTIVIGGDNFGCGSSREHAPVALGAAGVAAVVAESYARIFFRNSVATGEIYPLETEVR 193

Query: 189 LCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTGMIASRN 248
           +CEEC TGDVVTIE+AE+RLINHTTGKEYKLKPIGD GPVI+AGGIFAYAR TGMI S++
Sbjct: 194 ICEECKTGDVVTIELAENRLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARSTGMIPSQS 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116781026|gb|ABK21932.1| unknown [Picea sitchensis]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 146/196 (74%), Positives = 166/196 (84%), Gaps = 3/196 (1%)

Query: 53  PKATSADS-RATKEPTAT-FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYAL 110
           P+A ++ S  A  EP    FHG C+VV DNIDTDQIIPAEYLTLVPS PDEYEKLGSYA+
Sbjct: 94  PRAVASQSYDALTEPNKKIFHGKCFVVDDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYAM 153

Query: 111 IGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIF 170
           IGL A Y  RFI++++ KT+Y I+IAG NFGCGSSREHAPVALGAAG  AVVAE YARIF
Sbjct: 154 IGLNAKYG-RFIEDDQIKTQYPIVIAGANFGCGSSREHAPVALGAAGVKAVVAEYYARIF 212

Query: 171 FRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVID 230
           FRNSVATGEIYPL+SE R+C+EC TGD+VT+EI  ++LINHTTGKEY LKPIGD GPVID
Sbjct: 213 FRNSVATGEIYPLESECRVCDECKTGDIVTVEIEGNKLINHTTGKEYVLKPIGDAGPVID 272

Query: 231 AGGIFAYARKTGMIAS 246
           AGGIF YAR+TGMIA+
Sbjct: 273 AGGIFEYARRTGMIAA 288

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224284423|gb|ACN39946.1| unknown [Picea sitchensis]

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 146/196 (74%), Positives = 166/196 (84%), Gaps = 3/196 (1%)

Query: 53  PKATSADS-RATKEPTAT-FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYAL 110
           P+A ++ S  A  EP    FHG C+VV DNIDTDQIIPAEYLTLVPS PDEYEKLGSYA+
Sbjct: 68  PRAVASQSYDALTEPNKKIFHGKCFVVDDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYAM 127

Query: 111 IGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIF 170
           IGL A Y  RFI++++ KT+Y I+IAG NFGCGSSREHAPVALGAAG  AVVAE YARIF
Sbjct: 128 IGLNAKYG-RFIEDDQIKTQYPIVIAGANFGCGSSREHAPVALGAAGVKAVVAEYYARIF 186

Query: 171 FRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVID 230
           FRNSVATGEIYPL+SE R+C+EC TGD+VT+EI  ++LINHTTGKEY LKPIGD GPVID
Sbjct: 187 FRNSVATGEIYPLESECRVCDECKTGDIVTVEIEGNKLINHTTGKEYVLKPIGDAGPVID 246

Query: 231 AGGIFAYARKTGMIAS 246
           AGGIF YAR+TGMIA+
Sbjct: 247 AGGIFEYARRTGMIAA 262

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469374|ref|XP_002263405.1| PREDICTED: 3-isopropylmalate dehydratase small subunit [Vitis vinifera] gi|147767013|emb|CAN65399.1| hypothetical protein VITISV_034682 [Vitis vinifera]

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 146/178 (82%), Positives = 163/178 (91%)

Query: 70  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
           FHGLCYVV DNIDTDQIIPAEYLTLVPSNPDEY+KLGSYA IGLP++Y TRFI+  E KT
Sbjct: 74  FHGLCYVVHDNIDTDQIIPAEYLTLVPSNPDEYQKLGSYAFIGLPSSYETRFIEAGELKT 133

Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
           KY I+IAG NFGCGSSREHAPVALGAAG  AVVAESYARIFFRNSV+TGE+YPL++E R+
Sbjct: 134 KYTIVIAGQNFGCGSSREHAPVALGAAGARAVVAESYARIFFRNSVSTGEVYPLETEVRI 193

Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTGMIASR 247
           CEEC TGDVVTIE+ ES+LINHTTGKEYKL P+GD+GPVI+AGGIFAYARKTGMI ++
Sbjct: 194 CEECRTGDVVTIELGESKLINHTTGKEYKLNPVGDVGPVIEAGGIFAYARKTGMIPAQ 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|193290702|gb|ACF17659.1| putative 3-isopropylmalate dehydrogenase small subunit [Capsicum annuum]

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 149/193 (77%), Positives = 170/193 (88%)

Query: 54  KATSADSRATKEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGL 113
           ++ +A +  T   + TFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEY+KLGSYAL GL
Sbjct: 60  RSAAAAAPETTNSSTTFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYKKLGSYALCGL 119

Query: 114 PATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRN 173
           P++Y TRF++  E  +KY I+I G NFGCGSSREHAPVALGAAG +AVVAESYARIFFRN
Sbjct: 120 PSSYPTRFVEPGEFTSKYSIVIGGDNFGCGSSREHAPVALGAAGVAAVVAESYARIFFRN 179

Query: 174 SVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGG 233
           SV+TGE+YPL+SE R+CEEC TGDVVT+E  ESRLINHTTGKEYKLKPIGD GPVI+AGG
Sbjct: 180 SVSTGEVYPLESEVRICEECKTGDVVTVEFGESRLINHTTGKEYKLKPIGDAGPVIEAGG 239

Query: 234 IFAYARKTGMIAS 246
           IFAYARKTGMI++
Sbjct: 240 IFAYARKTGMISN 252

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2041081	251	AT2G43090 [Arabidopsis thalian	0.971	0.960	0.662	5.4e-79
TAIR|locus:2077685	253	IPMI1 "isopropylmalate isomera	0.762	0.747	0.715	4.9e-69
TAIR|locus:2040996	256	IPMI2 "isopropylmalate isomera	0.854	0.828	0.608	7.4e-66
TIGR_CMR|DET_0827	166	DET_0827 "3-isopropylmalate de	0.625	0.933	0.370	1.4e-23
TIGR_CMR|CHY_0523	162	CHY_0523 "3-isopropylmalate de	0.600	0.919	0.390	8e-21
UNIPROTKB|Q0QLE1	163	DmdB "2,3-dimethylmalate dehyd	0.629	0.957	0.333	6.5e-19
UNIPROTKB|Q3AD32	165	leuD "3-isopropylmalate dehydr	0.620	0.933	0.304	9.5e-18
TIGR_CMR|CHY_1106	165	CHY_1106 "3-isopropylmalate de	0.620	0.933	0.304	9.5e-18
UNIPROTKB|Q3Z9A6	167	leuD "3-isopropylmalate dehydr	0.625	0.928	0.317	6.7e-17
TIGR_CMR|DET_0449	167	DET_0449 "aconitase C-terminal	0.625	0.928	0.317	6.7e-17

TAIR|locus:2041081 AT2G43090 [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 165/249 (66%), Positives = 187/249 (75%)

Query:     4 ASSISFGANTTFTSSPIPKTKPL-FIPHSLKFTTGNGRA-AVTFQRAVSVIPKATSADSR 61
             A+S+   AN T + +     KP  F      F   N  + A  F+  VS    ++S  +R
Sbjct:     2 AASLQ-SANPTLSRTLASPNKPSSFATFRSPFLRFNSTSVASNFKPLVSR-EASSSFVTR 59

Query:    62 ATKEPTA--TFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTT 119
             +  EP    TFHGLCYVVGDNIDTDQIIPAE+LTLVPSNP+EYEKLGSYAL+GLPA+Y  
Sbjct:    60 SAAEPQERKTFHGLCYVVGDNIDTDQIIPAEFLTLVPSNPEEYEKLGSYALVGLPASYKE 119

Query:   120 RFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGE 179
             RF+   E KTKY III G NFGCGSSREHAPV LGAAG  AVVA+SYARIFFRNSVATGE
Sbjct:   120 RFVQPGEMKTKYSIIIGGENFGCGSSREHAPVCLGAAGAKAVVAQSYARIFFRNSVATGE 179

Query:   180 IYPLDSEARLCEECSTGDVVTIEIAE--SRLINHTTGKEYKLKPIGDLGPVIDAGGIFAY 237
             +YPLDSE R+C+EC+TGDV T+E+ E  S LINHTTGKEYKLKPIGD GPVIDAGGIFAY
Sbjct:   180 VYPLDSEVRVCDECTTGDVATVELREGDSILINHTTGKEYKLKPIGDAGPVIDAGGIFAY 239

Query:   238 ARKTGMIAS 246
             ARK GMI S
Sbjct:   240 ARKAGMIPS 248

GO:0003861 "3-isopropylmalate dehydratase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0009098 "leucine biosynthetic process" evidence=IEA

GO:0009316 "3-isopropylmalate dehydratase complex" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016836 "hydro-lyase activity" evidence=ISS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2077685 IPMI1 "isopropylmalate isomerase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 141/197 (71%), Positives = 158/197 (80%)

Query:    55 ATSADS--RATKEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIG 112
             A+S+DS    T+E   TFHGLC+V+ DNIDTDQIIPAEY TL+PS P++ EKLGS+AL G
Sbjct:    59 ASSSDSGESITRE---TFHGLCFVLKDNIDTDQIIPAEYGTLIPSIPEDREKLGSFALNG 115

Query:   113 LPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFR 172
             LP  Y  RF+   E K+KY +II G NFGCGSSREHAPV LGAAG  AVVAESYARIFFR
Sbjct:   116 LPKFYNERFVVPGEMKSKYSVIIGGDNFGCGSSREHAPVCLGAAGAKAVVAESYARIFFR 175

Query:   173 NSVATGEIYPLDSEARLCEECSTGDVVTIEIAE---SRLINHTTGKEYKLKPIGDLGPVI 229
             N VATGEI+PL+SE R+C+EC TGDVVTIE  E   S LINHTT KEYKLKP+GD GPVI
Sbjct:   176 NCVATGEIFPLESEVRICDECKTGDVVTIEHKEDGSSLLINHTTRKEYKLKPLGDAGPVI 235

Query:   230 DAGGIFAYARKTGMIAS 246
             DAGGIFAYARK GMI S
Sbjct:   236 DAGGIFAYARKAGMIPS 252

GO:0003861 "3-isopropylmalate dehydratase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0009098 "leucine biosynthetic process" evidence=IEA

GO:0009316 "3-isopropylmalate dehydratase complex" evidence=IEA

GO:0016836 "hydro-lyase activity" evidence=ISS

GO:0009536 "plastid" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2040996 IPMI2 "isopropylmalate isomerase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 135/222 (60%), Positives = 164/222 (73%)

Query:    28 IPHSLKFTTGNGRAAVTFQRAVSVIPKATSADSRATKE-PTATFHGLCYVVGDNIDTDQI 86
             IP S+  T+  G ++ T      +IP+A +++S + +     TFHGLCYV+ DNIDTDQI
Sbjct:    40 IPSSISITS-RGTSSPT------IIPRAAASESDSNEALANTTFHGLCYVLKDNIDTDQI 92

Query:    87 IPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSR 146
             IPA      PSN  E +++ ++AL GLP  + TRFI+  E ++KY III G NFGCGSSR
Sbjct:    93 IPAGAACTFPSNQQERDEIAAHALSGLPDFHKTRFIEPGENRSKYSIIIGGENFGCGSSR 152

Query:   147 EHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAES 206
             EHAPV LGAAG  A+VAESYARIFFRNSVATGE++PL+SE R+CEEC TGD VTIE+++S
Sbjct:   153 EHAPVCLGAAGAKAIVAESYARIFFRNSVATGEVFPLESEVRVCEECKTGDTVTIELSDS 212

Query:   207 R--LINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTGMIAS 246
                L NHTTGK YKLK IGD GPVIDAGGIFAYAR  GMI S
Sbjct:   213 GGLLTNHTTGKNYKLKSIGDAGPVIDAGGIFAYARMMGMIPS 254

GO:0003861 "3-isopropylmalate dehydratase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0009098 "leucine biosynthetic process" evidence=IEA

GO:0009316 "3-isopropylmalate dehydratase complex" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016836 "hydro-lyase activity" evidence=ISS

GO:0009536 "plastid" evidence=IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TIGR_CMR|DET_0827 DET_0827 "3-isopropylmalate dehydratase, small subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 63/170 (37%), Positives = 97/170 (57%)

Query:    72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
             G  +  G+N+DTD IIPA YL     N  E + L  + +  +   +  + +   +     
Sbjct:     4 GFVHKYGENVDTDAIIPARYL-----NVSEPKALAEHCMEDIDLDFVKK-VKPGD----- 52

Query:   132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
               I+A  NFGCGSSREHAP+++ A+G SAV+A S+ARIFFRN++  G   PL   A   E
Sbjct:    53 -FIVATTNFGCGSSREHAPISIKASGVSAVIAASFARIFFRNAINIG--LPLLESAEAAE 109

Query:   192 ECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
             + ++GD + I++    + + TTGK +  KP  + +  +I AGG+  Y R+
Sbjct:   110 KINSGDELEIDLESGVIKDLTTGKSFAAKPYPEFMSRLIKAGGLIEYTRE 159

GO:0003861 "3-isopropylmalate dehydratase activity" evidence=ISS

GO:0009098 "leucine biosynthetic process" evidence=ISS

GO:0009316 "3-isopropylmalate dehydratase complex" evidence=ISS

TIGR_CMR|CHY_0523 CHY_0523 "3-isopropylmalate dehydratase, small subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 64/164 (39%), Positives = 92/164 (56%)

Query:    78 GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAG 137
             GD+IDTD IIPA YL    S+P E   L  + +      ++ +    +       +I+AG
Sbjct:     7 GDDIDTDVIIPARYLNT--SDPLE---LAKHCMEDADPEFSKKARPGD-------VIVAG 54

Query:   138 GNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGD 197
              NFGCGSSREHAP+A+ A G  AV+A+S+ARIF+RNS   G +  L+      E+   GD
Sbjct:    55 KNFGCGSSREHAPIAIKALGIEAVIAKSFARIFYRNSFNIG-LKILECP-EAAEKIRDGD 112

Query:   198 VVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
              ++I      + N TTG+ Y  KPI + +  +I  GG+  Y R+
Sbjct:   113 ELSINYDTGEIKNLTTGESYFAKPIPEFMQNIIAKGGLINYVRE 156

GO:0003861 "3-isopropylmalate dehydratase activity" evidence=ISS

GO:0009098 "leucine biosynthetic process" evidence=ISS

GO:0009316 "3-isopropylmalate dehydratase complex" evidence=ISS

UNIPROTKB|Q0QLE1 DmdB "2,3-dimethylmalate dehydratase small subunit" [Eubacterium barkeri (taxid:1528)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 57/171 (33%), Positives = 95/171 (55%)

Query:    72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
             G  +  GDN+DTD IIPA +L    S+P E   L ++ +  + A ++++ ++  +     
Sbjct:     5 GSVFRYGDNVDTDVIIPARFLNT--SDPLE---LAAHCMEDIDADFSSK-VNAGD----- 53

Query:   132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE 191
              II+A  NFGCGSSREHAP+++ A+G S V+A S+ARIF+RN++  G   P+        
Sbjct:    54 -IIVADDNFGCGSSREHAPISIKASGVSCVIANSFARIFYRNAINIG--LPILECPEAVA 110

Query:   192 ECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKT 241
                 GD V ++     + + T G+ ++ +   + +  +I AGG+  Y   T
Sbjct:   111 VIEAGDEVEVDFDSGVITDVTKGQSFQGQAFPEFMQTLIAAGGLVNYINAT 161

GO:0047868 "dimethylmaleate hydratase activity" evidence=IDA

GO:0051187 "cofactor catabolic process" evidence=IDA

UNIPROTKB|Q3AD32 leuD "3-isopropylmalate dehydratase small subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 53/174 (30%), Positives = 100/174 (57%)

Query:    72 GLCYVVGDNIDTDQIIPAEYL--TLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
             G C+  G++++TD II  +Y   TL      +  +L  + +  L   +  +        T
Sbjct:     5 GKCHKFGNDVNTDYIISGKYKFKTL------DMNELARHVMEDLDPDFYNKI-------T 51

Query:   130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
                 I+AG NFGCGSSRE AP+A+  A   AV+A+S+ARIF+RN++ TG +  ++ +   
Sbjct:    52 PGDFIVAGSNFGCGSSREQAPLAIKYAKIGAVIAKSFARIFYRNAINTG-LPVIECDT-- 108

Query:   190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLG-PVIDAGGIFAYARKTG 242
              ++ + GD + +++++  + N TTG++  +KP+ ++   +++ GG+  + +K G
Sbjct:   109 -DKINAGDELEVDLSKGIIRNLTTGEDIPIKPLPEVMIKILNDGGLIEHFKKYG 161

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1106 CHY_1106 "3-isopropylmalate dehydratase, small subunit family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 53/174 (30%), Positives = 100/174 (57%)

Query:    72 GLCYVVGDNIDTDQIIPAEYL--TLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
             G C+  G++++TD II  +Y   TL      +  +L  + +  L   +  +        T
Sbjct:     5 GKCHKFGNDVNTDYIISGKYKFKTL------DMNELARHVMEDLDPDFYNKI-------T 51

Query:   130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
                 I+AG NFGCGSSRE AP+A+  A   AV+A+S+ARIF+RN++ TG +  ++ +   
Sbjct:    52 PGDFIVAGSNFGCGSSREQAPLAIKYAKIGAVIAKSFARIFYRNAINTG-LPVIECDT-- 108

Query:   190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLG-PVIDAGGIFAYARKTG 242
              ++ + GD + +++++  + N TTG++  +KP+ ++   +++ GG+  + +K G
Sbjct:   109 -DKINAGDELEVDLSKGIIRNLTTGEDIPIKPLPEVMIKILNDGGLIEHFKKYG 161

GO:0003824 "catalytic activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z9A6 leuD "3-isopropylmalate dehydratase small subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 55/173 (31%), Positives = 90/173 (52%)

Query:    72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
             G  +  GD+I TD I P   + L  + P+    L  + L     T+  R +   +     
Sbjct:     4 GKAFKFGDSISTDHIAPGRLVHLRSNLPE----LAKHVLEDADPTFAQR-VKPGD----- 53

Query:   132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATG-EIYPLDSEARLC 190
               ++AG NFG GSSREHAP+ +  +G SAV+A+S ARIFFRN++  G  +   D++ ++ 
Sbjct:    54 -FVVAGNNFGLGSSREHAPLIIKMSGVSAVLAKSVARIFFRNAINLGLPVLICDTD-KIA 111

Query:   191 EECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKTG 242
             E    GD + +++   ++ + T G E     I   +  ++D GG+  Y +K G
Sbjct:   112 E----GDELEVDLTGGKIYDRTNGAELTFGKIPPAMLKILDEGGVMPYIKKYG 160

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0449 DET_0449 "aconitase C-terminal domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 55/173 (31%), Positives = 90/173 (52%)

Query:    72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
             G  +  GD+I TD I P   + L  + P+    L  + L     T+  R +   +     
Sbjct:     4 GKAFKFGDSISTDHIAPGRLVHLRSNLPE----LAKHVLEDADPTFAQR-VKPGD----- 53

Query:   132 KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATG-EIYPLDSEARLC 190
               ++AG NFG GSSREHAP+ +  +G SAV+A+S ARIFFRN++  G  +   D++ ++ 
Sbjct:    54 -FVVAGNNFGLGSSREHAPLIIKMSGVSAVLAKSVARIFFRNAINLGLPVLICDTD-KIA 111

Query:   191 EECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKTG 242
             E    GD + +++   ++ + T G E     I   +  ++D GG+  Y +K G
Sbjct:   112 E----GDELEVDLTGGKIYDRTNGAELTFGKIPPAMLKILDEGGVMPYIKKYG 160

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.2.1	0.691
3rd Layer	4.2.1.33	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00012224001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_359, whole genome shotgun sequence); (253 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00003844001	SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (424 aa)	•		•	•	•	•	•		0.998
	GSVIVG00026591001	RecName- Full=3-isopropylmalate dehydrogenase; EC=1.1.1.85;; Catalyzes the oxidation of 3-carbo [...] (405 aa)	•		•	•		•	•		0.998
	GSVIVG00020357001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (507 aa)	•		•		•	•	•		0.998
	GSVIVG00005682001	SubName- Full=Chromosome chr5 scaffold_156, whole genome shotgun sequence; (447 aa)	•		•	•		•	•		0.988
	GSVIVG00005684001	SubName- Full=Chromosome chr5 scaffold_156, whole genome shotgun sequence; (440 aa)	•		•	•		•	•		0.964
	GSVIVG00020486001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (564 aa)	•						•		0.954
	GSVIVG00023212001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (366 aa)	•		•			•	•		0.946
	GSVIVG00035885001	SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (400 aa)	•						•		0.902
	GSVIVG00030599001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (344 aa)	•						•		0.895
	GSVIVG00036526001	RecName- Full=N-acetyl-gamma-glutamyl-phosphate reductase; EC=1.2.1.38; (398 aa)	•						•		0.893

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
PLN00072	246	PLN00072, PLN00072, 3-isopropylmalate isomerase/de	1e-126
PRK00439	163	PRK00439, leuD, 3-isopropylmalate dehydratase smal	2e-48
TIGR02084	156	TIGR02084, leud, 3-isopropylmalate dehydratase, sm	5e-37
COG0066	191	COG0066, LeuD, 3-isopropylmalate dehydratase small	1e-35
TIGR02087	154	TIGR02087, LEUD_arch, 3-isopropylmalate dehydratas	5e-35
cd01577	91	cd01577, IPMI_Swivel, Aconatase-like swivel domain	1e-33
PRK01641	200	PRK01641, leuD, isopropylmalate isomerase small su	2e-24
PRK14023	166	PRK14023, PRK14023, homoaconitate hydratase small	3e-23
TIGR00171	188	TIGR00171, leuD, 3-isopropylmalate dehydratase, sm	9e-18
pfam00694	131	pfam00694, Aconitase_C, Aconitase C-terminal domai	2e-16
cd00404	88	cd00404, Aconitase_swivel, Aconitase swivel domain	4e-14
cd01579	121	cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-lik	5e-14
COG1048	861	COG1048, AcnA, Aconitase A [Energy production and	2e-13
PRK07229	646	PRK07229, PRK07229, aconitate hydratase; Validated	2e-13
TIGR01342	658	TIGR01342, acon_putative, aconitate hydratase, put	7e-11
cd01674	129	cd01674, Homoaconitase_Swivel, Homoaconitase swive	2e-10
TIGR00139	712	TIGR00139, h_aconitase, homoaconitase	3e-09
cd01580	171	cd01580, AcnA_IRP_Swivel, Aconitase A swivel domai	7e-08
TIGR02333	858	TIGR02333, 2met_isocit_dHY, 2-methylisocitrate deh	2e-06
PRK12881	889	PRK12881, acnA, aconitate hydratase; Provisional	8e-06
PTZ00092	898	PTZ00092, PTZ00092, aconitate hydratase-like prote	2e-05
PRK09277	888	PRK09277, PRK09277, aconitate hydratase; Validated	2e-05
TIGR01341	876	TIGR01341, aconitase_1, aconitate hydratase 1	5e-05
PLN00070	936	PLN00070, PLN00070, aconitate hydratase	0.001
cd01578	149	cd01578, AcnA_Mitochon_Swivel, Mitochondrial aconi	0.002
PRK14812	119	PRK14812, PRK14812, hypothetical protein; Provisio	0.004

>gnl|CDD|177701 PLN00072, PLN00072, 3-isopropylmalate isomerase/dehydratase small subunit; Provisional

 Score =  358 bits (920), Expect = e-126
 Identities = 160/244 (65%), Positives = 174/244 (71%), Gaps = 1/244 (0%)

Query: 4   ASSISFGANTTFTSSPIP-KTKPLFIPHSLKFTTGNGRAAVTFQRAVSVIPKATSADSRA 62
           A+S      T   S     K+     P      +             S    + +    A
Sbjct: 2   AASQQSANPTLAPSLASTNKSSSSATPRPFLRFSSTSSIFPFKPLTTSSGTSSPTISDSA 61

Query: 63  TKEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFI 122
               + TFHGLC+VVGDNIDTDQIIPAEYLTLVPS PDEYEKLGSYALIGLPA Y TRF+
Sbjct: 62  ESTSSTTFHGLCFVVGDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPAFYKTRFV 121

Query: 123 DENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYP 182
           +  E KTKY III G NFGCGSSREHAPVALGAAG  AVVAESYARIFFRNSVATGE+YP
Sbjct: 122 EPGEMKTKYSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYP 181

Query: 183 LDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTG 242
           L+SE R+CEEC TGDVVT+E+  S LINHTTGKEYKLKPIGD GPVIDAGGIFAYARKTG
Sbjct: 182 LESEVRICEECKTGDVVTVELGNSVLINHTTGKEYKLKPIGDAGPVIDAGGIFAYARKTG 241

Query: 243 MIAS 246
           MI S
Sbjct: 242 MIPS 245

Length = 246

>gnl|CDD|234762 PRK00439, leuD, 3-isopropylmalate dehydratase small subunit; Reviewed

 Score =  156 bits (398), Expect = 2e-48
 Identities = 72/173 (41%), Positives = 100/173 (57%), Gaps = 15/173 (8%)

Query: 71  HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
            G  +  GDNIDTD IIPA YL    S+P E   L  + +  L   +  +          
Sbjct: 1   KGRVWKFGDNIDTDVIIPARYLNT--SDPQE---LAKHCMEDLDPEFAKKV-------KP 48

Query: 131 YKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLC 190
             II+AG NFGCGSSREHAP+AL AAG SAV+A+S+ARIF+RN++  G   P+       
Sbjct: 49  GDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIG--LPVLECDEAV 106

Query: 191 EECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKTG 242
           ++   GD V +++    + N TTG+EYK KPI + +  ++ AGG+  Y +K G
Sbjct: 107 DKIEDGDEVEVDLETGVITNLTTGEEYKFKPIPEFMLEILKAGGLIEYLKKKG 159

Length = 163

>gnl|CDD|131139 TIGR02084, leud, 3-isopropylmalate dehydratase, small subunit

 Score =  127 bits (321), Expect = 5e-37
 Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 21/173 (12%)

Query: 72  GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
           G  +  GDN+DTD IIPA YL     N  + ++L  + +  L          + +   K 
Sbjct: 1   GKVHKYGDNVDTDVIIPARYL-----NTSDPKELAKHCMEDL----------DKDFVKKV 45

Query: 132 K---IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR 188
           K   II+AG NFGCGSSREHAP+A+ A+G S V+A+S+ARIF+RN++  G   P+     
Sbjct: 46  KEGDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIG--LPIVESEE 103

Query: 189 LCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
             +E   GD V +++ +  + N T GKEYK  P  + L  ++ AGG+  Y +K
Sbjct: 104 AVDEIEEGDEVEVDLEKGIIKNLTKGKEYKATPFPEFLQKIMKAGGLLNYVKK 156

Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures. All are dehydratases (EC 4.2.1.-) and bind a Fe-4S iron-sulfur cluster. 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea [Amino acid biosynthesis, Pyruvate family]. Length = 156

>gnl|CDD|223144 COG0066, LeuD, 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]

 Score =  125 bits (315), Expect = 1e-35
 Identities = 56/155 (36%), Positives = 80/155 (51%), Gaps = 20/155 (12%)

Query: 78  GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDEN--ETKTKYK--- 132
            DN+DTDQIIP  +L  +         LG +           R++D +       Y+   
Sbjct: 16  RDNVDTDQIIPKRFLKTI--TRTG---LGKHLFEDW------RYLDPDFVLNVPPYQGGD 64

Query: 133 IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE- 191
           I++AG NFGCGSSREHAP AL   G  AV+A S+A IF+RN++  G +  + +E  + E 
Sbjct: 65  ILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTEL 124

Query: 192 -ECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDL 225
            E   GD VT+++    + N T G+E     I D 
Sbjct: 125 FEDVPGDEVTVDLETGEVTNPTGGEEP--FEIDDF 157

Length = 191

>gnl|CDD|233716 TIGR02087, LEUD_arch, 3-isopropylmalate dehydratase, small subunit

 Score =  122 bits (307), Expect = 5e-35
 Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 22/173 (12%)

Query: 72  GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY 131
           G  +  GD+IDTD+IIP  YL     +PDE   L S+A+ G         ID    K   
Sbjct: 1   GRVWKFGDDIDTDEIIPGRYLRTT--DPDE---LASHAMEG---------IDPEFAKKVR 46

Query: 132 K--IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
              +I+AG NFGCGSSRE A +AL AAG +AV+AES+ARIF+RN++  G +  ++++   
Sbjct: 47  PGDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIG-LPLIEAKTEG 105

Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLG-PVIDAGGIFAYARKT 241
            ++   GD VT+++    +      +EYK +P+ D    ++  GG+  Y +K 
Sbjct: 106 IKD---GDEVTVDLETGEIRV-NGNEEYKGEPLPDFLLEILREGGLLEYLKKR 154

This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities. Length = 154

>gnl|CDD|238809 cd01577, IPMI_Swivel, Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins

 Score =  116 bits (293), Expect = 1e-33
 Identities = 50/128 (39%), Positives = 61/128 (47%), Gaps = 39/128 (30%)

Query: 76  VVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIII 135
           + GDNIDTDQIIPA +L                                        II+
Sbjct: 1   LFGDNIDTDQIIPARFL--------------------------------------GDIIV 22

Query: 136 AGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECST 195
           AG NFGCGSSREHAP AL  AG  AV+AES+ARIFFRN++  G + P+       EE   
Sbjct: 23  AGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNG-LLPVTLADEDVEEVEA 81

Query: 196 GDVVTIEI 203
                +E+
Sbjct: 82  KPGDEVEV 89

3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. Length = 91

>gnl|CDD|179314 PRK01641, leuD, isopropylmalate isomerase small subunit; Provisional

 Score = 96.0 bits (240), Expect = 2e-24
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 26/140 (18%)

Query: 78  GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENET-------KTK 130
             N+DTDQIIP ++L  +          G             R++D+ +        + +
Sbjct: 16  RANVDTDQIIPKQFLKRI-----TRTGFGKGLF------DDWRYLDDGQPNPDFVLNQPR 64

Query: 131 YK---IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYP--LDS 185
           Y+   I++AG NFGCGSSREHAP AL   G  AV+A S+A IF+ N    G + P  L  
Sbjct: 65  YQGASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNG-LLPIVLPE 123

Query: 186 E--ARLCEECSTGDVVTIEI 203
           E    L +         + +
Sbjct: 124 EDVDELFKLVEANPGAELTV 143

Length = 200

>gnl|CDD|184460 PRK14023, PRK14023, homoaconitate hydratase small subunit; Provisional

 Score = 91.8 bits (228), Expect = 3e-23
 Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 16/166 (9%)

Query: 78  GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAG 137
           GDNI+TD I+P +Y   +       ++  +YA   L   + +     +       I++AG
Sbjct: 8   GDNINTDDILPGKYAPFMVGE----DRFHNYAFAHLRPEFASTVRPGD-------ILVAG 56

Query: 138 GNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGD 197
            NFG GSSRE+AP AL   G  A++A+SYARIF+RN V  G I P +SE  + +    GD
Sbjct: 57  RNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLG-IPPFESE-EVVDALEDGD 114

Query: 198 VVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKTG 242
            V +++    L     G+ ++L+P  + L   +  G I  Y RK G
Sbjct: 115 EVELDLETGVLT--RGGETFQLRPPPEFLLEALKEGSILEYYRKHG 158

Length = 166

>gnl|CDD|129275 TIGR00171, leuD, 3-isopropylmalate dehydratase, small subunit

 Score = 77.9 bits (192), Expect = 9e-18
 Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 23/111 (20%)

Query: 80  NIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK--------- 130
           N+DTD IIP ++L  +        + G     G    +  RF+D N  +           
Sbjct: 18  NVDTDAIIPKQFLKRI-------TRTG----FGKHLFFDWRFLDANGKEPNPDFVLNQPQ 66

Query: 131 YK---IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATG 178
           Y+   I++A  NFGCGSSREHAP AL   G   ++A S+A IF+ NS   G
Sbjct: 67  YQGASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNG 117

Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures. All are dehydratases (EC 4.2.1.-) and bind a Fe-4S iron-sulfur cluster. 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff [Amino acid biosynthesis, Pyruvate family]. Length = 188

>gnl|CDD|201399 pfam00694, Aconitase_C, Aconitase C-terminal domain

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 17/116 (14%)

Query: 79  DNIDTDQIIPAEYL-----TLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYK- 132
            N+DTD IIP ++L       + +   +  +        LP      F+D  E   +YK 
Sbjct: 17  SNVDTDLIIPKQFLGTIANIGLGNILFDGWRANKT--THLPTGENPDFVDAAE---RYKQ 71

Query: 133 -----IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPL 183
                ++I G N+GCGSSREHA  A    G  AV+A+S+ARI   N +  G + PL
Sbjct: 72  HGAPILVIGGKNYGCGSSREHAAWAPRDLGIKAVIAKSFARIHRNNLIKNG-LLPL 126

Members of this family usually also match to pfam00330. This domain undergoes conformational change in the enzyme mechanism. Length = 131

>gnl|CDD|238236 cd00404, Aconitase_swivel, Aconitase swivel domain

 Score = 65.6 bits (160), Expect = 4e-14
 Identities = 39/127 (30%), Positives = 52/127 (40%), Gaps = 42/127 (33%)

Query: 76  VVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIII 135
            V  NI TD I PA                                           ++I
Sbjct: 1   KVAGNITTDHISPAGPG----------------------------------------VVI 20

Query: 136 AGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLD-SEARLCEECS 194
              N+G GSSREHA + L   G  AV+A+S+ARIFFRN V  G + PL+ ++     +  
Sbjct: 21  GDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQG-LLPLEFADPEDYLKLH 79

Query: 195 TGDVVTI 201
           TGD + I
Sbjct: 80  TGDELDI 86

Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid. Length = 88

>gnl|CDD|238811 cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-like swivel domain

 Score = 66.3 bits (162), Expect = 5e-14
 Identities = 41/110 (37%), Positives = 54/110 (49%), Gaps = 12/110 (10%)

Query: 76  VVGDNIDTDQIIPA--EYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKI 133
            VGDNI TD I+PA  + L L  SN      +  +    +  T+  R             
Sbjct: 1   KVGDNITTDHIMPAGAKVLPL-RSN---IPAISEFVFHRVDPTFAER-----AKAAGPGF 51

Query: 134 IIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPL 183
           I+ G N+G GSSREHA +A    G  AV+A+S+ARI   N +  G I PL
Sbjct: 52  IVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFG-ILPL 100

Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known. Length = 121

>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion]

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 45/196 (22%), Positives = 66/196 (33%), Gaps = 47/196 (23%)

Query: 76  VVGDNIDTDQIIPAEYLTLVPSNPD-------EYEKLGSYA------------------- 109
            +GD+I TD I PA  +               E     SY                    
Sbjct: 641 KLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFANIRI 700

Query: 110 ---LIGLPATYTTRFIDEN--ETKTKYK------IIIAGGNFGCGSSREHAPVALGAAGC 158
              ++     YT         +   KYK      +++AG N+G GSSR+ A       G 
Sbjct: 701 RNEMVPGEGGYTIHQPSGEIYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGV 760

Query: 159 SAVVAESYARIFFRNSVATG----EIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTG 214
            AV+AES+ RI   N +  G    +    ++  +L          TI+I    L N   G
Sbjct: 761 KAVIAESFERIHRSNLIGMGVLPLQFPNGETYDKL----GLDGEETIDIG--GLENLKPG 814

Query: 215 KEYKLKPIGDLGPVID 230
               +      GPV +
Sbjct: 815 ATVTVTVTRGDGPVEE 830

Length = 861

>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated

 Score = 68.6 bits (169), Expect = 2e-13
 Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 40/185 (21%)

Query: 77  VGDNIDTDQIIPA--EYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKII 134
           VGDNI TD I+PA  ++L    SN      +  +   G+  T+  R  ++        I+
Sbjct: 477 VGDNITTDHIMPAGAKWLPY-RSNIP---NISEFVFEGVDNTFPERAKEQGGG-----IV 527

Query: 135 IAGGNFGCGSSREHA---PVALGAAGCSAVVAESYARIFFRNSVATGEIYPL---DSE-- 186
           + G N+G GSSREHA   P  LG     AV+A+S+ARI   N +  G I PL   D    
Sbjct: 528 VGGENYGQGSSREHAALAPRYLGVK---AVLAKSFARIHKANLINFG-ILPLTFADPADY 583

Query: 187 ARLCEECSTGDVVTI----EIAESR---LINHTTGKEYKLKPIGDLGP----VIDAGGIF 235
            ++ E    GDV+ I    E        ++N T  +E +++    L      ++ AGG  
Sbjct: 584 DKIEE----GDVLEIEDLREFLPGGPLTVVNVTKDEEIEVRH--TLSERQIEILLAGGAL 637

Query: 236 AYARK 240
              +K
Sbjct: 638 NLIKK 642

Length = 646

>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex type

 Score = 61.2 bits (148), Expect = 7e-11
 Identities = 45/110 (40%), Positives = 58/110 (52%), Gaps = 6/110 (5%)

Query: 76  VVGDNIDTDQIIPAEYLTL-VPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKII 134
           ++ DNI TD IIPA    L   SN    E +  + L  +   +  R     + K K  II
Sbjct: 478 IMEDNITTDHIIPAGADILKFRSN---IEAISEFTLHRIDDEFAER-AKAADEKGKAGII 533

Query: 135 IAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLD 184
           IAG N+G GSSREHA +A    G  AV+A+S+ARI   N    G I PL+
Sbjct: 534 IAGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFG-ILPLE 582

This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized [Energy metabolism, TCA cycle]. Length = 658

>gnl|CDD|238837 cd01674, Homoaconitase_Swivel, Homoaconitase swivel domain

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 12/98 (12%)

Query: 79  DNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKY-KIIIAG 137
           DN++TD I P +Y       P++  ++               +  E  TKTK   I+++G
Sbjct: 4   DNLNTDGIYPGKYTYQDDITPEKMAEV-----------CMENYDSEFSTKTKQGDILVSG 52

Query: 138 GNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSV 175
            NFG GSSRE A  AL A G   VV+ S+  IF RNS+
Sbjct: 53  FNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSI 90

This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. Length = 129

>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 10/103 (9%)

Query: 73  LCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYK 132
           L +   DNI+TD I P +Y T     P E  K+    +    A + T          +  
Sbjct: 535 LVFCDADNINTDGIYPGKY-TYQDDVPKE--KMAQVCMENYDAEFRT-------KAHEGD 584

Query: 133 IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSV 175
           I+++G NFGCGSSRE A  A+ A G + VV+ S+  IF RNS+
Sbjct: 585 ILVSGFNFGCGSSREQAATAILAKGINLVVSGSFGNIFSRNSI 627

Homoaconitase is known only as a fungal enzyme from two species, where it is part of an unusual lysine biosynthesis pathway. Because This model is based on just two sequences from a narrow taxonomic range, it may not recognize distant orthologs, should any exist. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain [Amino acid biosynthesis, Aspartate family]. Length = 712

>gnl|CDD|238812 cd01580, AcnA_IRP_Swivel, Aconitase A swivel domain

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 43/151 (28%), Positives = 59/151 (39%), Gaps = 46/151 (30%)

Query: 76  VVGDNIDTDQIIPA----------EYLTLVPSNPDEYEKLGS------------------ 107
           ++GD++ TD I PA          +YL      P ++   GS                  
Sbjct: 1   LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRL 60

Query: 108 -YALIGLPATYTTRFIDENETKT------KYK------IIIAGGNFGCGSSREHAPVALG 154
              L+      TT      E  +      +YK      +I+AG  +G GSSR+ A  A G
Sbjct: 61  RNKLVPGTEGGTTHHPPTGEVMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWA--AKG 118

Query: 155 AA--GCSAVVAESYARIFFRNSVATGEIYPL 183
               G  AV+AES+ RI   N V  G I PL
Sbjct: 119 PFLLGVKAVIAESFERIHRSNLVGMG-ILPL 148

This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. Length = 171

>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase, Fe/S-dependent

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 104 KLGSYALIGLPATYTTRFIDENETKTKYK---IIIAGGNFGCGSSREHAPVALGAAGCSA 160
           K GS A I  P    TR  +  ET    K   IIIAG ++G GSSR+ A   +  AG  A
Sbjct: 703 KQGSLARIE-PEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEA 761

Query: 161 VVAESYARIFFRNSVATGEIYPLD 184
           +VAE + RI   N V  G + PL+
Sbjct: 762 IVAEGFERIHRTNLVGMG-VLPLE 784

Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PMID:12473114). Length = 858

>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 42/154 (27%), Positives = 58/154 (37%), Gaps = 52/154 (33%)

Query: 76  VVGDNIDTDQIIPA----------EYLTLVPSNPDEYEKLGSYA------LIGLPATYT- 118
           V+GD+I TD I PA          +YL     N        SY        + +  T+  
Sbjct: 664 VLGDSITTDHISPAGAIKADSPAGKYLK---ENGVPKADFNSYGSRRGNHEVMMRGTFAN 720

Query: 119 ---------------TRFIDENETKT------KYK------IIIAGGNFGCGSSREHAPV 151
                          T      E  +      +Y+      ++IAG  +G GSSR+ A  
Sbjct: 721 VRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWA-- 778

Query: 152 ALGA--AGCSAVVAESYARIFFRNSVATGEIYPL 183
           A G    G  AV+AES+ RI   N V  G + PL
Sbjct: 779 AKGTRLLGVKAVIAESFERIHRSNLVGMG-VLPL 811

Length = 889

>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 11/62 (17%)

Query: 130 KYK------IIIAGGNFGCGSSREHAPVALGAA--GCSAVVAESYARIFFRNSVATGEIY 181
           KYK      I++AG  +G GSSR+ A  A G    G  AV+AES+ RI   N V  G I 
Sbjct: 765 KYKQEGVPLIVLAGKEYGSGSSRDWA--AKGPYLQGVKAVIAESFERIHRSNLVGMG-IL 821

Query: 182 PL 183
           PL
Sbjct: 822 PL 823

Length = 898

>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 53/141 (37%)

Query: 76  VVGDNIDTDQIIPA----------EYLTLVPSNPDEYEKLGSYA---------------- 109
           ++GD+I TD I PA          +YL     +  E +   SY                 
Sbjct: 663 LLGDSITTDHISPAGAIKADSPAGKYLL---EHGVEPKDFNSYGSRRGNHEVMMRGTFAN 719

Query: 110 -------LIGLPATYTTRFIDENETKT------KYK------IIIAGGNFGCGSSREHAP 150
                  + G+   YT R   E E  +      KYK      ++IAG  +G GSSR+ A 
Sbjct: 720 IRIRNEMVPGVEGGYT-RHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAA 778

Query: 151 --VALGAAGCSAVVAESYARI 169
               L   G  AV+AES+ RI
Sbjct: 779 KGTRL--LGVKAVIAESFERI 797

Length = 888

>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 43/153 (28%), Positives = 59/153 (38%), Gaps = 42/153 (27%)

Query: 76  VVGDNIDTDQIIPA----------EYLTLVPSNPDEYEKLGS------------YALI-- 111
           ++GD+I TD I PA          +YL     +  ++   GS            +A I  
Sbjct: 653 LLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRI 712

Query: 112 ------GLPATYTTRFIDENETKT-----KYK------IIIAGGNFGCGSSREHAPVALG 154
                 G    YT  F D           +YK      ++IAG  +G GSSR+ A     
Sbjct: 713 KNLMVKGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTK 772

Query: 155 AAGCSAVVAESYARIFFRNSVATGEIYPLDSEA 187
             G  AV+AES+ RI   N V  G + PL    
Sbjct: 773 LLGVKAVIAESFERIHRSNLVGMG-VIPLQFPQ 804

This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes [Energy metabolism, TCA cycle]. Length = 876

>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 130 KYK------IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPL 183
           KYK      II+AG  +G GSSR+ A       G  AV+A+S+ RI   N V  G I PL
Sbjct: 801 KYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG-IIPL 859

Length = 936

>gnl|CDD|238810 cd01578, AcnA_Mitochon_Swivel, Mitochondrial aconitase A swivel domain

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 133 IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARI 169
           ++I   N+G GSSREHA +     G  A++ +S+ARI
Sbjct: 72  VVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARI 108

Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members. Length = 149

>gnl|CDD|173273 PRK14812, PRK14812, hypothetical protein; Provisional

 Score = 35.9 bits (82), Expect = 0.004
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 143 GSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGE---IYPLDSEARLCEECSTGDVV 199
           GSSREHA  AL   G   V+A S+  I + N +  G    + P +   +L +   T D V
Sbjct: 3   GSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREVREKLAQLKPT-DQV 61

Query: 200 TIEIAESRLIN 210
           T+++ + ++I+
Sbjct: 62  TVDLEQQKIIS 72

Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
PLN00072	246	3-isopropylmalate isomerase/dehydratase small subu	100.0
PRK00439	163	leuD 3-isopropylmalate dehydratase small subunit;	100.0
TIGR02084	156	leud 3-isopropylmalate dehydratase, small subunit.	100.0
PRK14023	166	homoaconitate hydratase small subunit; Provisional	100.0
TIGR02087	154	LEUD_arch 3-isopropylmalate dehydratase, small sub	100.0
COG0066	191	LeuD 3-isopropylmalate dehydratase small subunit [	100.0
TIGR00171	188	leuD 3-isopropylmalate dehydratase, small subunit.	100.0
PRK01641	200	leuD isopropylmalate isomerase small subunit; Prov	100.0
TIGR00139	712	h_aconitase homoaconitase. Homoaconitase, aconitas	100.0
PRK07229	646	aconitate hydratase; Validated	100.0
TIGR01342	658	acon_putative aconitate hydratase, putative, Aquif	100.0
cd01579	121	AcnA_Bact_Swivel Bacterial Aconitase-like swivel d	100.0
PRK12881	889	acnA aconitate hydratase; Provisional	100.0
PRK09238	835	bifunctional aconitate hydratase 2/2-methylisocitr	100.0
PLN00070	936	aconitate hydratase	100.0
PTZ00092	898	aconitate hydratase-like protein; Provisional	100.0
cd01674	129	Homoaconitase_Swivel Homoaconitase swivel domain.	100.0
TIGR00117	844	acnB aconitate hydratase 2. Aconitate hydratase (a	100.0
TIGR01341	876	aconitase_1 aconitate hydratase 1. This model repr	100.0
KOG0454	502	consensus 3-isopropylmalate dehydratase (aconitase	100.0
PRK09277	888	aconitate hydratase; Validated	100.0
cd01577	91	IPMI_Swivel Aconatase-like swivel domain of 3-isop	100.0
PRK11413	751	putative hydratase; Provisional	100.0
TIGR01340	745	aconitase_mito aconitate hydratase, mitochondrial.	100.0
TIGR02333	858	2met_isocit_dHY 2-methylisocitrate dehydratase, Fe	100.0
cd01578	149	AcnA_Mitochon_Swivel Mitochondrial aconitase A swi	100.0
cd01576	131	AcnB_Swivel Aconitase B swivel domain. Aconitate h	100.0
KOG0452	892	consensus RNA-binding translational regulator IRP	100.0
COG1048	861	AcnA Aconitase A [Energy production and conversion	100.0
cd00404	88	Aconitase_swivel Aconitase swivel domain. Aconitas	100.0
cd01580	171	AcnA_IRP_Swivel Aconitase A swivel domain. This is	99.98
PF00694	131	Aconitase_C: Aconitase C-terminal domain CAUTION:	99.97
PLN00094	938	aconitate hydratase 2; Provisional	99.97
PRK14812	119	hypothetical protein; Provisional	99.94
KOG0453	778	consensus Aconitase/homoaconitase (aconitase super	99.9
PF06434	204	Aconitase_2_N: Aconitate hydratase 2 N-terminus; I	99.66
COG1049	852	AcnB Aconitase B [Energy production and conversion	99.2

>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional

Probab=100.00  E-value=1.7e-65  Score=457.20  Aligned_cols=241  Identities=65%  Similarity=1.021  Sum_probs=206.0

Q ss_pred             ccccccccccccccCCCCCCCCcccCCcccccCCCC-CCCccccceeeccCCCCccCccCCCCCCceEEeEEEecCCCCC
Q 025777            4 ASSISFGANTTFTSSPIPKTKPLFIPHSLKFTTGNG-RAAVTFQRAVSVIPKATSADSRATKEPTATFHGLCYVVGDNID   82 (248)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~v~~lgDnId   82 (248)
                      .+..+++++..+++++++++..+.+ ++|+|+...+ |+++++.+...  +-.+..+++.+...++.++|+||+++||||
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Grv~k~gDNId   81 (246)
T PLN00072          5 QQSANPTLAPSLASTNKSSSSATPR-PFLRFSSTSSIFPFKPLTTSSG--TSSPTISDSAESTSSTTFHGLCFVVGDNID   81 (246)
T ss_pred             ccccccccCCCcccCCCcccccCCc-hhhcccccccccccccccCCCc--cccccccccCCCCCCCeEEEeEEEeCCCcc
Confidence            4556788999998888888777775 9999976442 23333333222  111222444555668899999999999999


Q ss_pred             ccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhhHHhcCccEEE
Q 025777           83 TDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVV  162 (248)
Q Consensus        83 TD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al~~lGI~aVI  162 (248)
                      ||+|+|++||....+++.++++|++|+|++++++|.+|++++|+.++++.|||||+|||||||||||+|||+++||+|||
T Consensus        82 TD~IiPa~~l~~~~sn~~~~~~l~~~~F~~l~~~~~~r~v~~Gd~~~~~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVI  161 (246)
T PLN00072         82 TDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPAFYKTRFVEPGEMKTKYSIIIGGENFGCGSSREHAPVALGAAGAKAVV  161 (246)
T ss_pred             hhhcccHHHhccccccCCCHHHHHHhhhccCCcchhhcccCCCCCCCCceEEEecCcccCCCcHHHHHHHHHHcCCCEEE
Confidence            99999999998765655678999999999999888899999998778889999999999999999999999999999999


Q ss_pred             echhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCChHHHHHhCCHHHHHHHhC
Q 025777          163 AESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDAGGIFAYARKTG  242 (248)
Q Consensus       163 AeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~~~~ii~aGGll~y~kk~g  242 (248)
                      |+||+|||||||+|+||++|++.++++++.+++||+|+||+++++|+++++|++|.+++.+++++||++|||++|+|++|
T Consensus       162 A~SFArIF~rN~iN~GLllpi~~~~~~~e~i~~Gd~i~VDl~~~~v~n~t~g~~~~~~p~~~~~~Il~aGGl~~y~r~~g  241 (246)
T PLN00072        162 AESYARIFFRNSVATGEVYPLESEVRICEECKTGDVVTVELGNSVLINHTTGKEYKLKPIGDAGPVIDAGGIFAYARKTG  241 (246)
T ss_pred             ECcHHHHHHHHHHhCCcceeecccHHHHHhcCCCCEEEEECCCCEEEECCCCeEEEecCCHHHHHHHHcCCHHHHHHhhC
Confidence            99999999999999997688887778899999999999999999999999999999999988899999999999999999


Q ss_pred             CCcCC
Q 025777          243 MIASR  247 (248)
Q Consensus       243 ~~~~~  247 (248)
                      |||++
T Consensus       242 ~~~~~  246 (246)
T PLN00072        242 MIPSA  246 (246)
T ss_pred             CCCCC
Confidence            99985

>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed

Probab=100.00  E-value=2.4e-54  Score=366.72  Aligned_cols=161  Identities=43%  Similarity=0.776  Sum_probs=146.2

Q ss_pred             EeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHh
Q 025777           71 HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAP  150 (248)
Q Consensus        71 ~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa  150 (248)
                      +||||++|||||||+|+|++||+..     +.++|++|+|++++|+|..+ .++|      +|||||+|||||||||||+
T Consensus         1 ~grv~~~gdnIdTD~I~P~~~l~~~-----~~~~l~~~~f~~~~p~f~~~-~~~g------~IiVaG~NfG~GSSRE~A~   68 (163)
T PRK00439          1 KGRVWKFGDNIDTDVIIPARYLNTS-----DPQELAKHCMEDLDPEFAKK-VKPG------DIIVAGKNFGCGSSREHAP   68 (163)
T ss_pred             CCeEEEeCCCCchhhCChHHHhCCC-----CHHHHHHHHhccCCcchHhh-cCCc------eEEEeCCcccCCccHHHHH
Confidence            4899999999999999999999763     47899999999999999544 4455      7999999999999999999


Q ss_pred             hhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCC-hHHHH
Q 025777          151 VALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVI  229 (248)
Q Consensus       151 ~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~-~~~ii  229 (248)
                      |||+++||+||||+||+|||+|||+|+| +||++.+ .+++.+++||+|+||+++++|++.++|++|+|+++++ +++++
T Consensus        69 ~al~~~Gi~aVIA~SFa~If~rN~~n~G-ll~i~~~-~~~~~l~~gd~i~idl~~~~v~~~~~g~~~~f~~l~~~~~~il  146 (163)
T PRK00439         69 IALKAAGVSAVIAKSFARIFYRNAINIG-LPVLECD-EAVDKIEDGDEVEVDLETGVITNLTTGEEYKFKPIPEFMLEIL  146 (163)
T ss_pred             HHHHHHCCCeEEEehHHHHHHhhHHhcC-CCeEEch-hHHHhcCCCCEEEEECCCCEEEeCCCCeEEEEeeCCHHHHHHH
Confidence            9999999999999999999999999999 6888764 3478899999999999999998877799999988777 79999


Q ss_pred             HhCCHHHHHHHhCCCc
Q 025777          230 DAGGIFAYARKTGMIA  245 (248)
Q Consensus       230 ~aGGll~y~kk~g~~~  245 (248)
                      ++||++||++++|++|
T Consensus       147 ~aGGl~~~~~~~~~~~  162 (163)
T PRK00439        147 KAGGLIEYLKKKGRFP  162 (163)
T ss_pred             HcCCHHHHHHHhcccC
Confidence            9999999999999886

>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit

Probab=100.00  E-value=1.7e-54  Score=365.36  Aligned_cols=155  Identities=42%  Similarity=0.764  Sum_probs=142.4

Q ss_pred             eEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhh
Q 025777           72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPV  151 (248)
Q Consensus        72 G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~  151 (248)
                      ||||++|||||||+|+|++||...     +++.|++|+|++++|+|..+ .++|      +|||||+|||||||||||+|
T Consensus         1 grv~~~gdnIdTD~I~P~~~l~~~-----~~~~l~~~~f~~~~p~f~~~-~~~g------~iiVaG~NFG~GSSRE~A~~   68 (156)
T TIGR02084         1 GKVHKYGDNVDTDVIIPARYLNTS-----DPKELAKHCMEDLDKDFVKK-VKEG------DIIVAGENFGCGSSREHAPI   68 (156)
T ss_pred             CceEEcCCCccHhhccHHHHcCcC-----CHHHHHhhhhccCChhHHhh-cCCC------CEEEccCcccCCCcHHHHHH
Confidence            799999999999999999999743     47899999999999999544 4555      79999999999999999999


Q ss_pred             hHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCC-hHHHHH
Q 025777          152 ALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVID  230 (248)
Q Consensus       152 al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~-~~~ii~  230 (248)
                      +|+++||+||||+||+|||+|||+|+|  ||+..++++++.+++||+|+||+++++|++.++|++|.+++.++ ++++++
T Consensus        69 al~~~Gi~aVIA~SFarIf~rN~iN~G--Lp~~~~~~~~~~l~~gd~i~idl~~~~v~~~~~g~~~~~~~~~~~~~~il~  146 (156)
T TIGR02084        69 AIKASGISCVIAKSFARIFYRNAINIG--LPIVESEEAVDEIEEGDEVEVDLEKGIIKNLTKGKEYKATPFPEFLQKIMK  146 (156)
T ss_pred             HHHHhCCCEEEEehHHHHHHhhhhhCC--CCeecCHHHHHHhCCCCEEEEECCCCEEEEecCCEEEEeecCCHHHHHHHH
Confidence            999999999999999999999999999  36777888899999999999999999999888899999998887 799999


Q ss_pred             hCCHHHHHHH
Q 025777          231 AGGIFAYARK  240 (248)
Q Consensus       231 aGGll~y~kk  240 (248)
                      +|||++|+|+
T Consensus       147 ~GGl~~~~~~  156 (156)
T TIGR02084       147 AGGLLNYVKK  156 (156)
T ss_pred             cCCHHHHhhC
Confidence            9999999985

Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.

>PRK14023 homoaconitate hydratase small subunit; Provisional

Probab=100.00  E-value=5.5e-54  Score=365.45  Aligned_cols=161  Identities=35%  Similarity=0.646  Sum_probs=146.2

Q ss_pred             eEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhh
Q 025777           72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPV  151 (248)
Q Consensus        72 G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~  151 (248)
                      ||||++|||||||+|+|++||+...    +.++|++|+|++++|+|..+ +++|      +|||||+|||||||||||+|
T Consensus         2 grv~~~gdnIdTD~IiPa~~l~~~~----~~~~l~~~~f~~~~p~f~~~-~~~g------~IIVaG~NFG~GSSREhA~~   70 (166)
T PRK14023          2 ARVWKFGDNINTDDILPGKYAPFMV----GEDRFHNYAFAHLRPEFAST-VRPG------DILVAGRNFGLGSSREYAPE   70 (166)
T ss_pred             CceEEcCCCcchhhcchHHHhccCC----CHHHHHhhhccCCChhhHhh-cCCC------CEEEccCcccCCccHHHHHH
Confidence            8999999999999999999987642    36899999999999999543 4455      79999999999999999999


Q ss_pred             hHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCC-hHHHHH
Q 025777          152 ALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVID  230 (248)
Q Consensus       152 al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~-~~~ii~  230 (248)
                      |++++||++|||+||+|||+|||+|+| ++|++ ++++++.+++||+|+||++.+++++  +|++|++.+.++ ++++++
T Consensus        71 al~~~Gi~aVIA~SFa~If~rN~~n~G-ll~~~-~~~~~~~l~~gd~i~vDl~~~~v~~--~g~~~~~~~~~~~~~~il~  146 (166)
T PRK14023         71 ALKMLGIGAIIAKSYARIFYRNLVNLG-IPPFE-SEEVVDALEDGDEVELDLETGVLTR--GGETFQLRPPPEFLLEALK  146 (166)
T ss_pred             HHHHHCCCEEEEehHHHHHHhhhhhcC-CCccC-CHHHHHHhCCCCEEEEECCCCEEEE--CCEEEEEeeCCHHHHHHHH
Confidence            999999999999999999999999999 67776 5677888999999999999999986  588999999887 799999


Q ss_pred             hCCHHHHHHHhCCCcCC
Q 025777          231 AGGIFAYARKTGMIASR  247 (248)
Q Consensus       231 aGGll~y~kk~g~~~~~  247 (248)
                      +|||++|+|++|++|.+
T Consensus       147 aGGl~~~~~~~~~~~~~  163 (166)
T PRK14023        147 EGSILEYYRKHGRFPGE  163 (166)
T ss_pred             cCCHHHHHHHhCCCCCC
Confidence            99999999999998865

>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit

Probab=100.00  E-value=1.4e-52  Score=352.95  Aligned_cols=153  Identities=40%  Similarity=0.740  Sum_probs=135.9

Q ss_pred             eEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhh
Q 025777           72 GLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPV  151 (248)
Q Consensus        72 G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~  151 (248)
                      ||||++|||||||+|+|++||...     ++++|++|+|++++|+|..+ .++|      +|||||+|||||||||||+|
T Consensus         1 grv~~~gdnIdTD~IiP~~~l~~~-----~~~~l~~~~f~~~~p~f~~~-~~~g------~iiVaG~NFG~GSSRE~A~~   68 (154)
T TIGR02087         1 GRVWKFGDDIDTDEIIPGRYLRTT-----DPDELASHAMEGIDPEFAKK-VRPG------DVIVAGKNFGCGSSREQAAL   68 (154)
T ss_pred             CceEEcCCCcchhhCcHHHHhCcC-----CHHHHHhhccCcCCchhhhc-CCCC------cEEEcCCcccCCccHHHHHH
Confidence            799999999999999999999753     47899999999999999543 4555      79999999999999999999


Q ss_pred             hHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCC-hHHHHH
Q 025777          152 ALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVID  230 (248)
Q Consensus       152 al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~-~~~ii~  230 (248)
                      ||+++||+||||+||++||+|||+|+| +++++.++   +.+++||+|+||+++++|+. ++|++|.+.+.++ ++++++
T Consensus        69 al~~~Gi~aVIA~SFa~If~rN~in~G-lp~i~~~~---~~i~~gd~i~vdl~~~~v~~-~~g~~~~~~~l~~~~~~i~~  143 (154)
T TIGR02087        69 ALKAAGIAAVIAESFARIFYRNAINIG-LPLIEAKT---EGIKDGDEVTVDLETGEIRV-NGNEEYKGEPLPDFLLEILR  143 (154)
T ss_pred             HHHHhCCCEEEeehHHHHHHhhhhhcC-CCcEecCH---HHCCCCCEEEEECCCCEEEE-CCCeEEEEeCCCHHHHHHHH
Confidence            999999999999999999999999999 45555443   56889999999999999884 5678899988887 799999


Q ss_pred             hCCHHHHHHHh
Q 025777          231 AGGIFAYARKT  241 (248)
Q Consensus       231 aGGll~y~kk~  241 (248)
                      +||++||+|++
T Consensus       144 aGGl~~~~~~~  154 (154)
T TIGR02087       144 EGGLLEYLKKR  154 (154)
T ss_pred             cCCHHHHHhcC
Confidence            99999999874

This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.

>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-51  Score=353.90  Aligned_cols=166  Identities=35%  Similarity=0.545  Sum_probs=138.6

Q ss_pred             CCCceEEeEEEecC-CCCCccccccccccccCCCCchhhHHHhhhhhcCCC---CCccccccccCCcccceeEEEecCcc
Q 025777           65 EPTATFHGLCYVVG-DNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLP---ATYTTRFIDENETKTKYKIIIAGGNF  140 (248)
Q Consensus        65 ~~~~~i~G~v~~lg-DnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~---~~f~~r~~~~G~~~~~~~IIVaG~NF  140 (248)
                      +.++.++|++|+|+ ||||||+|||++||+..     ++++|++|+|++.+   |+|. ..+++   +++++|||||+||
T Consensus         2 ~~f~~~~G~~~pl~~dnIDTD~IIP~~fLk~i-----~~~gl~k~~f~~~r~~~PdF~-~n~~~---yq~g~IlVag~NF   72 (191)
T COG0066           2 EKFTKITGRVWPLGRDNVDTDQIIPKRFLKTI-----TRTGLGKHLFEDWRYLDPDFV-LNVPP---YQGGDILVAGENF   72 (191)
T ss_pred             CceEEEeeeEEecCCCCCccccCccHHHhccc-----CHhhhhhcccccccccCcchh-hcCCc---cCCccEEEecCCC
Confidence            35778999999998 99999999999999876     37899999999888   8884 22222   3345899999999


Q ss_pred             CCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhh-hhcC--CCCEEEEEccCcEEEeCCCCeEE
Q 025777          141 GCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLC-EECS--TGDVVTIEIAESRLINHTTGKEY  217 (248)
Q Consensus       141 G~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~-~~~~--~Gd~I~IDL~~~~v~~~~~G~~~  217 (248)
                      |||||||||+|||+++||+||||+||||||||||+||| +||+..+++.. +.++  +|++|+|||++++|++.++++. 
T Consensus        73 GcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG-~Lpi~~~~~~~~~l~~~~~g~~i~VDL~~~~v~~~~~~~~-  150 (191)
T COG0066          73 GCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNG-LLPIVLAEEDVTELFEDVPGDEVTVDLETGEVTNPTGGEE-  150 (191)
T ss_pred             CCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcC-cCceecChHHHHHHHHhCCCCEEEEEcCCCeEEeCCCCEE-
Confidence            99999999999999999999999999999999999999 68887665433 3344  4999999999999998654444 


Q ss_pred             EEeeCCC-hHHHHHhC----CHHHHHHHhC
Q 025777          218 KLKPIGD-LGPVIDAG----GIFAYARKTG  242 (248)
Q Consensus       218 ~~~~~~~-~~~ii~aG----Gll~y~kk~g  242 (248)
                      . .++++ .++++.+|    ||+.|.+++.
T Consensus       151 ~-f~i~~f~~~~L~~GlD~iGlt~~~~~~i  179 (191)
T COG0066         151 P-FEIDDFRREILLNGLDDIGLTLQHKKEI  179 (191)
T ss_pred             E-ccCCHHHHHHHHcCCcccchHHHHHHHH
Confidence            3 44555 68999999    9999988754

>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit

Probab=100.00  E-value=1.5e-46  Score=325.19  Aligned_cols=156  Identities=29%  Similarity=0.508  Sum_probs=127.6

Q ss_pred             CCCceEEeEEEec-CCCCCccccccccccccCCCCchhhHHHhhhhhcCC----------CCCccccccccCCcccceeE
Q 025777           65 EPTATFHGLCYVV-GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGL----------PATYTTRFIDENETKTKYKI  133 (248)
Q Consensus        65 ~~~~~i~G~v~~l-gDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l----------~~~f~~r~~~~G~~~~~~~I  133 (248)
                      ++++.++|++|++ +||||||+|+|++||+..     ++++|++|+|+++          +|+|    ..+.+..++.+|
T Consensus         2 ~~~~~~~G~~~~l~~dnIDTD~IiP~rfl~~~-----~~~~l~~~~f~~~R~~~~~g~~~~p~F----~ln~~~~~~~~I   72 (188)
T TIGR00171         2 APFKSHTGLVAPLDAANVDTDAIIPKQFLKRI-----TRTGFGKHLFFDWRFLDANGKEPNPDF----VLNQPQYQGASI   72 (188)
T ss_pred             CCcEEEEEEEEECCCCcCcHhhhhHHHHhCcC-----CHHHHHHhccccccccccccCCCCcch----hhcccccCCCcE
Confidence            3678999999999 899999999999999764     4789999999873          3444    112222334489


Q ss_pred             EEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchh-hhhh----cCCCCEEEEEccCcEE
Q 025777          134 IIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR-LCEE----CSTGDVVTIEIAESRL  208 (248)
Q Consensus       134 IVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~-~~~~----~~~Gd~I~IDL~~~~v  208 (248)
                      ||||+|||||||||||+|||+++||+||||+||++||||||+|+| ++|++.+.+ +.+.    .++|++|+|||++++|
T Consensus        73 lVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnG-ll~i~~~~~~i~~~~~~~~~~g~~i~vDl~~~~v  151 (188)
T TIGR00171        73 LLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNG-LLPIRLSYDEVKELFGQVENQGLQMTVDLENQLI  151 (188)
T ss_pred             EEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCC-CCccccCHHHHHHHHHHhhCCCCEEEEECCCCEE
Confidence            999999999999999999999999999999999999999999999 678876533 2322    4899999999999999


Q ss_pred             EeCCCCeEEEEeeCCC-hHHHHHhC
Q 025777          209 INHTTGKEYKLKPIGD-LGPVIDAG  232 (248)
Q Consensus       209 ~~~~~G~~~~~~~~~~-~~~ii~aG  232 (248)
                      ++. +|++|.|+ +++ .++.+-+|
T Consensus       152 ~~~-~~~~~~f~-i~~~~r~~ll~G  174 (188)
T TIGR00171       152 HDS-EGKVYSFE-IDPFRKHCLING  174 (188)
T ss_pred             EeC-CCeEEEEE-eCHHHHHHHHcC
Confidence            986 67889999 555 45666555

Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.

>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional

Probab=100.00  E-value=1.4e-45  Score=322.02  Aligned_cols=155  Identities=31%  Similarity=0.507  Sum_probs=130.6

Q ss_pred             CCCceEEeEEEec-CCCCCccccccccccccCCCCchhhHHHhhhhhcCCC--------CCccccccccCCcccceeEEE
Q 025777           65 EPTATFHGLCYVV-GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLP--------ATYTTRFIDENETKTKYKIII  135 (248)
Q Consensus        65 ~~~~~i~G~v~~l-gDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~--------~~f~~r~~~~G~~~~~~~IIV  135 (248)
                      .++++++|+||++ +||||||+|+|++||+..     ++++|++|+|++++        |+|.    .+.+..++.+|||
T Consensus         2 ~~~~~i~G~~~~l~~dnIDTD~IiPa~fl~~~-----~~~~l~~~~f~~~r~~~~~~~~p~F~----ln~~~~~~~~IlV   72 (200)
T PRK01641          2 EKFTTHTGLAVPLDRANVDTDQIIPKQFLKRI-----TRTGFGKGLFDDWRYLDDGQPNPDFV----LNQPRYQGASILL   72 (200)
T ss_pred             CCcEEEEEEEEEcCCCCCChhhcchHhHcCcC-----CHHHHHHhhhccccccccCCCCCCcc----ccccccCCCeEEE
Confidence            3678899999999 999999999999999764     47899999999886        6662    1112223348999


Q ss_pred             ecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecch----hhhhhc--CCCCEEEEEccCcEEE
Q 025777          136 AGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA----RLCEEC--STGDVVTIEIAESRLI  209 (248)
Q Consensus       136 aG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~----~~~~~~--~~Gd~I~IDL~~~~v~  209 (248)
                      ||+|||||||||||+|||+++||+||||+||++||+|||+|+| ++|++.++    ++.+.+  ++|++|+|||++++|+
T Consensus        73 aG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~G-ll~i~~~~~~i~~l~~~~~~~~g~~i~vDl~~~~v~  151 (200)
T PRK01641         73 AGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNG-LLPIVLPEEDVDELFKLVEANPGAELTVDLEAQTVT  151 (200)
T ss_pred             cCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCC-CCeEeeCHHHHHHHHHHHhcCCCCEEEEEcCCCEEe
Confidence            9999999999999999999999999999999999999999999 67887654    344455  7999999999999998


Q ss_pred             eCCCCeEEEEeeCCC-hHHHHHhC
Q 025777          210 NHTTGKEYKLKPIGD-LGPVIDAG  232 (248)
Q Consensus       210 ~~~~G~~~~~~~~~~-~~~ii~aG  232 (248)
                      +.  |++|.|+ +++ .++++.+|
T Consensus       152 ~~--~~~~~f~-i~~~~~~~l~~G  172 (200)
T PRK01641        152 AP--DKTFPFE-IDPFRRHCLLNG  172 (200)
T ss_pred             cC--CeEEEEE-cCHHHHHHHHcC
Confidence            74  6889999 665 68888888

>TIGR00139 h_aconitase homoaconitase

Probab=100.00  E-value=5.9e-44  Score=357.29  Aligned_cols=163  Identities=32%  Similarity=0.516  Sum_probs=141.3

Q ss_pred             CCceEEeEE-EecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCC
Q 025777           66 PTATFHGLC-YVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGS  144 (248)
Q Consensus        66 ~~~~i~G~v-~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GS  144 (248)
                      -+..++|+| ++++||||||+|+|++|+.....   +++.|++|+|++++|+|..+ .++|      +|||||+||||||
T Consensus       527 ~~~~i~g~v~~~~gdnI~TD~I~P~~~~~~~~~---~~~~l~~~~~~~~dp~f~~~-~~~g------~iiVaG~NfG~GS  596 (712)
T TIGR00139       527 FPEEFSGELVFCDADNINTDGIYPGKYTYQDDV---PKEKMAQVCMENYDAEFRTK-AHEG------DILVSGFNFGCGS  596 (712)
T ss_pred             CCceEEEEEEEcCCCCCchhhccchhhcccCCC---CHHHHHHhhccCCCcchhhc-CCCC------CEEEeCCccCCCC
Confidence            366899998 56699999999999999954222   46899999999999999544 5556      7999999999999


Q ss_pred             CcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcC-------------CCCEEEEEccCcEEEeC
Q 025777          145 SREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECS-------------TGDVVTIEIAESRLINH  211 (248)
Q Consensus       145 SREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~-------------~Gd~I~IDL~~~~v~~~  211 (248)
                      |||||+|||+++||+||||+||+|||||||+|+| ++||+++. +.+.+.             +||+|+||++.++|++ 
T Consensus       597 SREhA~~al~~~Gi~~ViA~SFarIf~rN~iN~G-l~~l~~~~-~~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~g~i~~-  673 (712)
T TIGR00139       597 SREQAATAILAKGINLVVSGSFGNIFSRNSINNA-LLGLEIPA-LIKKLREKFGGADKELTRRTGWFLKWDVADAKIEV-  673 (712)
T ss_pred             cHHHHHHHHHHcCCcEEEEchHHHHHHhHHHhcC-CceEEchh-HHHHHHhhhcccccccccCCCCEEEEEccCCEEEE-
Confidence            9999999999999999999999999999999999 67787643 444444             7999999999999998 


Q ss_pred             CCC----e---EEEEeeCCC-hHHHHHhCCHHHHHHHh
Q 025777          212 TTG----K---EYKLKPIGD-LGPVIDAGGIFAYARKT  241 (248)
Q Consensus       212 ~~G----~---~~~~~~~~~-~~~ii~aGGll~y~kk~  241 (248)
                      ++|    +   +|++.++++ +++||++|||++|+|++
T Consensus       674 t~g~~~~~~~~~~~~~~~p~~~~eii~~GGl~~~~k~~  711 (712)
T TIGR00139       674 QEGSLDGGPILEHKVGELGKNLQEIIAKGGLEGWVKNA  711 (712)
T ss_pred             CCCcccccceeEEEcCCCCHHHHHHHHcCCHHHHHHhc
Confidence            666    3   899999988 79999999999999985

Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.

>PRK07229 aconitate hydratase; Validated

Probab=100.00  E-value=4.1e-42  Score=342.94  Aligned_cols=166  Identities=31%  Similarity=0.508  Sum_probs=142.4

Q ss_pred             CceEEeEE-EecCCCCCcccccccc--ccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCC
Q 025777           67 TATFHGLC-YVVGDNIDTDQIIPAE--YLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCG  143 (248)
Q Consensus        67 ~~~i~G~v-~~lgDnIdTD~IiPa~--~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~G  143 (248)
                      ...+.++| |+++||||||||+|++  |++.+.    +.+.|++|+|++++|+|..+..+.|     .+|||||+|||||
T Consensus       466 ~~~~~~~vl~~~gd~i~TD~I~Pa~~~~l~~r~----~~~~l~~~~f~~~~~~f~~~~~~~~-----~~iiVaG~nfG~G  536 (646)
T PRK07229        466 PDLLEGKVLLKVGDNITTDHIMPAGAKWLPYRS----NIPNISEFVFEGVDNTFPERAKEQG-----GGIVVGGENYGQG  536 (646)
T ss_pred             CcCceEEEEEEcCCCCChhccCcCCcchhccCC----CHHHHHHHHhccCChhhhHHHHhcC-----CcEEEecCccCCC
Confidence            46788998 8999999999999999  887543    4689999999999999965432222     3899999999999


Q ss_pred             CCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeec-chhhhhhcCCCCEEEE-Ecc----Cc--EEEeCCCCe
Q 025777          144 SSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDS-EARLCEECSTGDVVTI-EIA----ES--RLINHTTGK  215 (248)
Q Consensus       144 SSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~-~~~~~~~~~~Gd~I~I-DL~----~~--~v~~~~~G~  215 (248)
                      ||||||+|+++++||+||||+||+|||+|||+|+| +|||++ ++++++.++.||+|+| |++    .+  +++++++|+
T Consensus       537 SSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~G-llpl~~~~~~~~~~l~~gd~i~i~dl~~~~~~~~v~v~~~~~~~  615 (646)
T PRK07229        537 SSREHAALAPRYLGVKAVLAKSFARIHKANLINFG-ILPLTFADPADYDKIEEGDVLEIEDLREFLPGGPLTVVNVTKDE  615 (646)
T ss_pred             CchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcC-CceEEecChHhHhhcCCCCEEEEccchhcCCCCeEEEEEecCCE
Confidence            99999999999999999999999999999999999 789987 6778889999999999 886    45  355666788


Q ss_pred             EEEEe-eCCC-hHHHHHhCCHHHHHHHhC
Q 025777          216 EYKLK-PIGD-LGPVIDAGGIFAYARKTG  242 (248)
Q Consensus       216 ~~~~~-~~~~-~~~ii~aGGll~y~kk~g  242 (248)
                      +|++. +.++ +++++++||++||++++.
T Consensus       616 ~~~~~~~l~~~e~~i~~aGGll~~~~~~~  644 (646)
T PRK07229        616 EIEVRHTLSERQIEILLAGGALNLIKKKL  644 (646)
T ss_pred             EEEEEccCCHHHHHHHHcCCHHHHHHHhc
Confidence            99985 5555 689999999999998853

>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type

Probab=100.00  E-value=3.2e-42  Score=343.87  Aligned_cols=168  Identities=32%  Similarity=0.446  Sum_probs=141.1

Q ss_pred             ceEEeEE-EecCCCCCccccccccccc--cCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCC
Q 025777           68 ATFHGLC-YVVGDNIDTDQIIPAEYLT--LVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGS  144 (248)
Q Consensus        68 ~~i~G~v-~~lgDnIdTD~IiPa~~l~--~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GS  144 (248)
                      ..++|+| |+++||||||||+|++|+.  .+.    +.+.+++|+|++++|+|.. ..+.+.......|||||+||||||
T Consensus       469 ~~i~grv~~~~gDnI~TD~I~Pa~~~~l~~r~----~~~~l~~~~~~~~~p~f~~-~~~~~~~~~~~~iiVaG~nfG~GS  543 (658)
T TIGR01342       469 ADIEGETALIMEDNITTDHIIPAGADILKFRS----NIEAISEFTLHRIDDEFAE-RAKAADEKGKAGIIIAGENYGQGS  543 (658)
T ss_pred             cccCceEEEEcCCCCChhcCCCCCccccccCC----CHHHHhhheeeCCCchHHH-HhhcccccCCceEEEcCCcCCCCc
Confidence            5788995 8999999999999999753  232    4678999999999999953 344443333457999999999999


Q ss_pred             CcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhhcCCCCEEEEE--cc-------CcEEEeCCCC
Q 025777          145 SREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEECSTGDVVTIE--IA-------ESRLINHTTG  214 (248)
Q Consensus       145 SREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~~~~Gd~I~ID--L~-------~~~v~~~~~G  214 (248)
                      |||||+|+++++||+||||+||+|||+|||+|+| ++||++. +++++.++.||+++||  ++       +..+++.++|
T Consensus       544 SREhAa~a~~~lGv~aVIA~SFarIf~~N~in~G-llpl~~~d~~~~~~i~~Gd~l~id~~l~~~~~~g~~~~i~~~~~g  622 (658)
T TIGR01342       544 SREHAALAPMFLGVEAVIAKSFARIHHANLFNFG-ILPLEFDNEEDYAKFELGDDIEIPDDLAAALADGEDEFTINKNDD  622 (658)
T ss_pred             cHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcC-cceEEecChhhHHHhCCCCEEEECchhhhhcCCCCceEEEEecCC
Confidence            9999999999999999999999999999999999 7889864 5688899999999998  65       3456666678


Q ss_pred             eEEEEe-eCCC-hHHHHHhCCHHHHHHHh
Q 025777          215 KEYKLK-PIGD-LGPVIDAGGIFAYARKT  241 (248)
Q Consensus       215 ~~~~~~-~~~~-~~~ii~aGGll~y~kk~  241 (248)
                      .++.+. +.++ +++|+++||++||++++
T Consensus       623 ~~~~~~~~l~~~e~ei~~aGGlln~~~~~  651 (658)
T TIGR01342       623 EEALATLDASEREKEILAAGGKLNLIKNK  651 (658)
T ss_pred             eEEEEeCCCCHHHHHHHHcCCHHHHHHHh
Confidence            888888 4455 78999999999999874

This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.

>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain

Probab=100.00  E-value=3e-42  Score=280.01  Aligned_cols=118  Identities=34%  Similarity=0.499  Sum_probs=101.7

Q ss_pred             ecCCCCCcccccccc--ccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhhH
Q 025777           76 VVGDNIDTDQIIPAE--YLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVAL  153 (248)
Q Consensus        76 ~lgDnIdTD~IiPa~--~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al  153 (248)
                      ++|||||||+|+|++  |+..+.    +.++|++|+|++++|+|.. ..++|.    ..|||||+|||||||||||+||+
T Consensus         1 ~~gdnidTD~IiP~~~~~~~~~~----~~~~l~~~~f~~~~p~f~~-~~~~~~----~~iiVaG~nFG~GSSRE~A~~al   71 (121)
T cd01579           1 KVGDNITTDHIMPAGAKVLPLRS----NIPAISEFVFHRVDPTFAE-RAKAAG----PGFIVGGENYGQGSSREHAALAP   71 (121)
T ss_pred             CCCCcCChhhcCCCCccccccCC----CHHHHHHhhccCCCchHHh-hcccCC----CeEEEcCCcCCCCccHHHHHHHH
Confidence            579999999999995  555432    4688999999999999954 344542    25999999999999999999999


Q ss_pred             HhcCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhhcCCCCEEEEEc
Q 025777          154 GAAGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEECSTGDVVTIEI  203 (248)
Q Consensus       154 ~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~~~~Gd~I~IDL  203 (248)
                      +.+||+||||+||+|||+|||+|+| ++|++.+ +.+++.+++||+|+|||
T Consensus        72 ~~~Gi~aVIA~SFa~If~rN~in~G-ll~i~~~~~~~~~~~~~gd~i~id~  121 (121)
T cd01579          72 MYLGVRAVLAKSFARIHRANLINFG-ILPLTFADEDDYDRFEQGDQLELPL  121 (121)
T ss_pred             HHHCCCEEEEccHHHHHHhHHhhcC-cceEEecChhhHhhcCCCCEEEcCC
Confidence            9999999999999999999999999 6788653 56788899999999986

Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.

>PRK12881 acnA aconitate hydratase; Provisional

Probab=100.00  E-value=1.5e-40  Score=337.87  Aligned_cols=207  Identities=24%  Similarity=0.283  Sum_probs=160.7

Q ss_pred             CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEE-eEE-EecCCCCCcccccccc----------ccccCC
Q 025777           30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFH-GLC-YVVGDNIDTDQIIPAE----------YLTLVP   96 (248)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~-G~v-~~lgDnIdTD~IiPa~----------~l~~~~   96 (248)
                      ..|+.|.+..|.|+|.|+|++   +++ ...+..++.+...+. .+| .++||+|+||||+||+          ||..+.
T Consensus       618 ~~l~~~~~~~~~wd~~StyI~---~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~g  694 (889)
T PRK12881        618 AAIEAPDGPLYDWDPKSTYIR---RPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENG  694 (889)
T ss_pred             ccccCCCCCeeccCCCCCccc---CCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcC
Confidence            577889999999999999999   566 666666665655554 477 7889999999999997          998888


Q ss_pred             CCchhhHHHhh----------hhhcCCC----------CCccccccccCCccc----------c--eeEEEecCccCCCC
Q 025777           97 SNPDEYEKLGS----------YALIGLP----------ATYTTRFIDENETKT----------K--YKIIIAGGNFGCGS  144 (248)
Q Consensus        97 ~~p~d~~~l~~----------~a~~~l~----------~~f~~r~~~~G~~~~----------~--~~IIVaG~NFG~GS  144 (248)
                      ..|.|++.||.          +.|..++          ++| +++.+.|+..+          .  -.|||||+||||||
T Consensus       695 v~~~dfnsyg~rRgN~evm~rgtF~nir~~N~l~~~~egg~-t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GS  773 (889)
T PRK12881        695 VPKADFNSYGSRRGNHEVMMRGTFANVRIKNLMIPGKEGGL-TLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGS  773 (889)
T ss_pred             CChhhcccccccccchHHhhhhccccCcccceeccccccCe-eEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCC
Confidence            88889998886          2333322          344 55556665532          1  27999999999999


Q ss_pred             CcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecch-hhhh--hcCCCCEEEEEccCc------EEE---eCC
Q 025777          145 SREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA-RLCE--ECSTGDVVTIEIAES------RLI---NHT  212 (248)
Q Consensus       145 SREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~-~~~~--~~~~Gd~I~IDL~~~------~v~---~~~  212 (248)
                      |||||+|+++++||+||||+||+|||++|++|+| +|||++.+ ..++  .++.||+++|+...+      .++   ++.
T Consensus       774 SRe~Aa~~~~~lGv~aVIA~SFaRIh~~Nli~~G-ilpL~f~~~~~~~~l~l~g~d~i~I~~~~~~i~p~~~v~v~~~~~  852 (889)
T PRK12881        774 SRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMG-VLPLQFKGGDSRQSLGLTGGETFDIEGLPGEIKPRQDVTLVIHRA  852 (889)
T ss_pred             cHHHHHHHHHHhCCcEEEEecHHHHHHhhhhhcC-cceEEeCCccchhhcCcCCCCEEEEeCCccccCCCCeEEEEEEeC
Confidence            9999999999999999999999999999999999 79998743 3555  578999999974322      222   344


Q ss_pred             CCeEEEE--eeCC--C-hHHHHHhCCHHHHHHHh
Q 025777          213 TGKEYKL--KPIG--D-LGPVIDAGGIFAYARKT  241 (248)
Q Consensus       213 ~G~~~~~--~~~~--~-~~~ii~aGGll~y~kk~  241 (248)
                      +|+++++  ....  + +.+++++||+|||++++
T Consensus       853 ~G~~~~~~~~~r~dt~~e~e~~~aGGiL~yv~~~  886 (889)
T PRK12881        853 DGSTERVPVLCRIDTPIEVDYYKAGGILPYVLRQ  886 (889)
T ss_pred             CCCEEEEEEEeccCCHHHHHHHHcCCHHHHHHHH
Confidence            6765555  3333  3 68999999999999764

>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated

Probab=100.00  E-value=1.6e-39  Score=328.14  Aligned_cols=166  Identities=22%  Similarity=0.268  Sum_probs=142.2

Q ss_pred             CCCCceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccc---cCCcccceeEEEecCcc
Q 025777           64 KEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFID---ENETKTKYKIIIAGGNF  140 (248)
Q Consensus        64 ~~~~~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~---~G~~~~~~~IIVaG~NF  140 (248)
                      +..+.+++|+||+++||||||+|+|++|+..++    |.+.+++|+|++++|+|..+..+   +|     ..|+|+|+||
T Consensus       160 ~~l~~~i~g~V~KvgdnInTD~I~Pa~~~~~Rs----dipl~a~~~~e~~~p~f~~~i~~~~~~G-----~~IivaG~nf  230 (835)
T PRK09238        160 PELPEKITVTVFKVTGETNTDDLSPAPDAWSRP----DIPLHALAMLKNRRPGPIKQIEELKKKG-----HPVAYVGDVV  230 (835)
T ss_pred             CCCccccEEEEEEeCCCCchhccCCccccccCC----CHHHHHHHhccCCCCcHHHHHHhhccCC-----CEEEEECCCE
Confidence            344678899999999999999999999997653    57889999999999999544221   34     2599999999


Q ss_pred             CCCCCcCcHhhhHHhc-C-----------ccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEE
Q 025777          141 GCGSSREHAPVALGAA-G-----------CSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRL  208 (248)
Q Consensus       141 G~GSSREhAa~al~~l-G-----------I~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v  208 (248)
                      |||||||||+|++..+ |           .++|||+||||||||||+|+| +||++.+   ++.+++||+|+||+.+++|
T Consensus       231 G~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa~SfArIFf~Nain~G-lLpIe~d---~~~i~~Gd~i~Id~~~g~I  306 (835)
T PRK09238        231 GTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLGGKIAPIFFNTMEDSG-ALPIELD---VSKLNMGDVIDIYPYKGKI  306 (835)
T ss_pred             eCCcCHHHHHHHHHHhhCCccccccccceEEEEEeCchHHHHHhhhHHcC-CceEEeC---HHHcCCCCEEEEECCCCEE
Confidence            9999999999998433 2           499999999999999999999 6889875   6778999999999999999


Q ss_pred             EeCCCCeE-EEEeeCCC-hHHHHHhCCHHHHHHHhCC
Q 025777          209 INHTTGKE-YKLKPIGD-LGPVIDAGGIFAYARKTGM  243 (248)
Q Consensus       209 ~~~~~G~~-~~~~~~~~-~~~ii~aGGll~y~kk~g~  243 (248)
                      ++ .+|+. +.|++.++ .+++++|||++||++.+|+
T Consensus       307 ~~-~~g~~~~~f~l~p~~~~div~AGGli~~i~gr~l  342 (835)
T PRK09238        307 RN-ETGEVIATFKLKTDVLLDEVRAGGRIPLIIGRGL  342 (835)
T ss_pred             Ee-CCCeEEEEEecCcHHHHHHHHcCChHHHHHhccc
Confidence            88 45654 89999877 7999999999999988765

>PLN00070 aconitate hydratase

Probab=100.00  E-value=1.5e-38  Score=323.96  Aligned_cols=207  Identities=25%  Similarity=0.341  Sum_probs=159.6

Q ss_pred             CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEEe-EE-EecCCCCCcccccccc----------ccccCC
Q 025777           30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFHG-LC-YVVGDNIDTDQIIPAE----------YLTLVP   96 (248)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~G-~v-~~lgDnIdTD~IiPa~----------~l~~~~   96 (248)
                      ..|..|++..|.|++.|+|+.   +++ +.+.+..+.+...+.+ +| .++||+|+||||+||+          ||..+.
T Consensus       666 ~~l~~p~~~~~~wd~~Styi~---~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~g  742 (936)
T PLN00070        666 NQLSVPSGTLYSWDPKSTYIH---EPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERG  742 (936)
T ss_pred             ccCCCCCCCcccCCCCcceee---cCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcC
Confidence            346789999999999999999   776 7777776666666744 77 7889999999999997          899888


Q ss_pred             CCchhhHHHhh----------hhhc--CC--------CCCccccccccCCccc------c------eeEEEecCccCCCC
Q 025777           97 SNPDEYEKLGS----------YALI--GL--------PATYTTRFIDENETKT------K------YKIIIAGGNFGCGS  144 (248)
Q Consensus        97 ~~p~d~~~l~~----------~a~~--~l--------~~~f~~r~~~~G~~~~------~------~~IIVaG~NFG~GS  144 (248)
                      ..|.|++.||.          ..|.  ++        ..++ +++.+.|+..+      .      -.|||||+||||||
T Consensus       743 v~~~dfnsygsrRgN~evm~rgtFaNir~~N~~~~g~~g~~-t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GS  821 (936)
T PLN00070        743 VDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLKGEVGPK-TVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGS  821 (936)
T ss_pred             CChhhccccccccCcchhhhceeccchhhhhhhcCCCcCCe-eEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCC
Confidence            88889988865          2222  11        1223 45555665532      1      27999999999999


Q ss_pred             CcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecch-hhhhhcCC--CCEEEEEccC-------c-EEE-eCC
Q 025777          145 SREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA-RLCEECST--GDVVTIEIAE-------S-RLI-NHT  212 (248)
Q Consensus       145 SREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~-~~~~~~~~--Gd~I~IDL~~-------~-~v~-~~~  212 (248)
                      |||||+|+++++||+||||+||+|||++||+|+| +|||++.+ ..++.+..  ++.++|++.+       + .++ ...
T Consensus       822 SRe~AA~~~~~lGvkaVIA~SF~rIhrsNli~~G-iLPL~f~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~  900 (936)
T PLN00070        822 SRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG-IIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTD  900 (936)
T ss_pred             cHHHHHHHHHHhCCcEEEEccHHHHHHhhhhhcC-cceEEeCCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeC
Confidence            9999999999999999999999999999999999 89998743 45555543  5667777633       2 222 224


Q ss_pred             CCeEEEEeeCCC---hHHHHHhCCHHHHHHHh
Q 025777          213 TGKEYKLKPIGD---LGPVIDAGGIFAYARKT  241 (248)
Q Consensus       213 ~G~~~~~~~~~~---~~~ii~aGGll~y~kk~  241 (248)
                      +|++|.+....+   +.+++++||+|||++++
T Consensus       901 ~g~~~~~~~r~dt~~E~~~~~~GGiL~~v~r~  932 (936)
T PLN00070        901 NGKSFTCTLRFDTEVELAYFDHGGILPYVIRN  932 (936)
T ss_pred             CCeEEEEEEeCCCHHHHHHHHcCCHHHHHHHH
Confidence            678888776543   68999999999998764

>PTZ00092 aconitate hydratase-like protein; Provisional

Probab=100.00  E-value=2.6e-38  Score=321.51  Aligned_cols=207  Identities=24%  Similarity=0.343  Sum_probs=160.7

Q ss_pred             CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEEe-EE-EecCCCCCcccccccc----------ccccCC
Q 025777           30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFHG-LC-YVVGDNIDTDQIIPAE----------YLTLVP   96 (248)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~G-~v-~~lgDnIdTD~IiPa~----------~l~~~~   96 (248)
                      ..|+.|++..|.|+|.|+|++   +++ +.+++.++.+...+.| || .++||+|+||||+||+          ||..+.
T Consensus       631 ~~l~~~~~~~~~w~~~StyI~---~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~g  707 (898)
T PTZ00092        631 NELQVPKGKLYEWDEKSTYIH---NPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERG  707 (898)
T ss_pred             hhccCCCCCccccCCCCCccc---CCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcC
Confidence            457788899999999999999   555 7777766666555544 77 7889999999999997          898888


Q ss_pred             CCchhhHHHhh----------hhhc--CC-------CCCccccccccCCccc------------ceeEEEecCccCCCCC
Q 025777           97 SNPDEYEKLGS----------YALI--GL-------PATYTTRFIDENETKT------------KYKIIIAGGNFGCGSS  145 (248)
Q Consensus        97 ~~p~d~~~l~~----------~a~~--~l-------~~~f~~r~~~~G~~~~------------~~~IIVaG~NFG~GSS  145 (248)
                      ..|.|++.||.          ..|.  .+       .+.+ +++.+.|+..+            .-.|||||+|||||||
T Consensus       708 v~~~dfnsygsrRgN~~vm~RgtF~Niri~N~l~g~~g~~-t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSS  786 (898)
T PTZ00092        708 VERKDFNTYGARRGNDEVMVRGTFANIRLINKLCGKVGPN-TVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSS  786 (898)
T ss_pred             CChhhccccccccCCchhhcceeccccceeeeeccCCCCc-eEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCc
Confidence            88899988876          2232  32       2334 44455565532            1279999999999999


Q ss_pred             cCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhh--cCCCCEEEEEc-cC----c-EEE-eCCCCe
Q 025777          146 REHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEE--CSTGDVVTIEI-AE----S-RLI-NHTTGK  215 (248)
Q Consensus       146 REhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~--~~~Gd~I~IDL-~~----~-~v~-~~~~G~  215 (248)
                      ||||+|+++++||+||||+||+|||++||+|+| +|||++. +..++.  +..+++++|++ .+    + .++ ...+|+
T Consensus       787 Re~AA~~~~~lGvraVIA~SF~rIh~~Nli~~G-vlPL~f~~~~~~~~l~~~~~~~i~i~~~~~~l~p~~~v~v~~~~G~  865 (898)
T PTZ00092        787 RDWAAKGPYLQGVKAVIAESFERIHRSNLVGMG-ILPLQFLNGENADSLGLTGKEQFSIDLNSGELKPGQDVTVKTDTGK  865 (898)
T ss_pred             HHHHHHHHHHhCCcEEEEecHHHHHHhhhhhcC-cceeecCCcccHHHhcCCCCeEEEEeccccccCCCCeEEEEeCCCc
Confidence            999999999999999999999999999999999 8999874 345555  45677899976 22    2 333 235688


Q ss_pred             EEEEeeCCC---hHHHHHhCCHHHHHHHh
Q 025777          216 EYKLKPIGD---LGPVIDAGGIFAYARKT  241 (248)
Q Consensus       216 ~~~~~~~~~---~~~ii~aGGll~y~kk~  241 (248)
                      +|.+...-+   +.+++++||+|||++++
T Consensus       866 ~~~~~~r~dt~~e~~y~~~GGiL~yv~~~  894 (898)
T PTZ00092        866 TFDTILRIDTEVEVEYFKHGGILQYVLRK  894 (898)
T ss_pred             EEEEEEeCCCHHHHHHHHcCCHHHHHHHH
Confidence            888776542   67999999999998664

>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain

Probab=100.00  E-value=8.5e-39  Score=260.70  Aligned_cols=99  Identities=32%  Similarity=0.491  Sum_probs=87.2

Q ss_pred             cCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhhHHhc
Q 025777           77 VGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAA  156 (248)
Q Consensus        77 lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al~~l  156 (248)
                      ..||||||+|+|++|+.....   +.+.|++|+|++++|+|. ..+++|      +|||+|+|||||||||||+|||+.+
T Consensus         2 ~~DnInTD~IiP~~y~~~~~~---~~e~la~~~~e~~dp~f~-~~v~~g------dilVaG~nFG~GSSRE~A~~al~~~   71 (129)
T cd01674           2 DADNLNTDGIYPGKYTYQDDI---TPEKMAEVCMENYDSEFS-TKTKQG------DILVSGFNFGTGSSREQAATALLAK   71 (129)
T ss_pred             CccccchhccCcccccccCCC---CHHHHHHhhcccCCchhh-hcCCCC------CEEEeCCccCCCCcHHHHHHHHHHc
Confidence            369999999999999943222   468899999999999995 446667      7999999999999999999999999


Q ss_pred             CccEEEechhhHHHhhchhhcCceeeeecc
Q 025777          157 GCSAVVAESYARIFFRNSVATGEIYPLDSE  186 (248)
Q Consensus       157 GI~aVIAeSFarIf~rN~in~GlilPL~~~  186 (248)
                      ||++|||+||+|||+|||+|+| +++++.+
T Consensus        72 Gi~~VIA~SFa~If~rN~iN~G-l~~i~~~  100 (129)
T cd01674          72 GIPLVVSGSFGNIFSRNSINNA-LLSIELP  100 (129)
T ss_pred             CccEEEechHHHHHHHhhHhcC-CCeEech
Confidence            9999999999999999999999 5677654

This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.

>TIGR00117 acnB aconitate hydratase 2

Probab=100.00  E-value=3.2e-38  Score=318.18  Aligned_cols=165  Identities=20%  Similarity=0.273  Sum_probs=143.7

Q ss_pred             CCCCceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccc---cccCCcccceeEEEecCcc
Q 025777           64 KEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRF---IDENETKTKYKIIIAGGNF  140 (248)
Q Consensus        64 ~~~~~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~---~~~G~~~~~~~IIVaG~NF  140 (248)
                      +..++.++|+||+++||||||+|+|++|+.++.    |.+.+++++|+..+|+|..+.   .++|.     .|+|+|+||
T Consensus       161 ~~~~~~i~g~V~k~gddinTD~i~Pa~~a~sr~----D~~~~a~~m~~~~~p~~~~~i~~~~~~Gd-----~iivaG~nf  231 (844)
T TIGR00117       161 PALAEKITVTVFKVTGETNTDDLSPAPDAWTRP----DIPLHALAMLKNAREGIEPQIEALKQKGF-----PVAYVGDVV  231 (844)
T ss_pred             CCcchheEEEEEEeCCCCchhccCChhhhhcCC----CHHHHHHHHhhcCCccHHHHHHHhccCCC-----eEEEeCCce
Confidence            344678899999999999999999999998763    678899999999999985332   14452     399999999


Q ss_pred             CCCCCcCcHhhhH-------------HhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcE
Q 025777          141 GCGSSREHAPVAL-------------GAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESR  207 (248)
Q Consensus       141 G~GSSREhAa~al-------------~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~  207 (248)
                      |||||||||+.++             +.+| .+|||+|||||||||++|.| ++|++.+   ++.+++||+|+||+.+|+
T Consensus       232 G~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArIFfrnain~G-l~~ie~~---~~~l~~GD~i~Id~~~G~  306 (844)
T TIGR00117       232 GTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPIFFNTMEDSG-ALPIEVD---VSNLNMGDVIDIYPYKGE  306 (844)
T ss_pred             ecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHhhhcchhhcC-CCeEEeC---HhhcCCCCEEEEECCCCE
Confidence            9999999999999             9999 99999999999999999999 5677654   678999999999999999


Q ss_pred             EEeCCCCeE-EEEeeCCC-hHHHHHhCCHHHHHHHhCC
Q 025777          208 LINHTTGKE-YKLKPIGD-LGPVIDAGGIFAYARKTGM  243 (248)
Q Consensus       208 v~~~~~G~~-~~~~~~~~-~~~ii~aGGll~y~kk~g~  243 (248)
                      |++. +|++ ++|++.++ .+++++|||++||+-.+|+
T Consensus       307 I~n~-~g~~~~~f~~~p~~l~div~AGGli~~i~gr~l  343 (844)
T TIGR00117       307 ITNH-EGELLATFELKPETLLDEVRAGGRIPLIIGRGL  343 (844)
T ss_pred             EEeC-CCCEEEEeeeCCHHHHHHHHcCCchhhhhcccc
Confidence            9987 4555 99999998 6999999999999877654

Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.

>TIGR01341 aconitase_1 aconitate hydratase 1

Probab=100.00  E-value=9.3e-38  Score=316.88  Aligned_cols=207  Identities=25%  Similarity=0.358  Sum_probs=159.1

Q ss_pred             CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEEe-EE-EecCCCCCcccccccc----------ccccCC
Q 025777           30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFHG-LC-YVVGDNIDTDQIIPAE----------YLTLVP   96 (248)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~G-~v-~~lgDnIdTD~IiPa~----------~l~~~~   96 (248)
                      ..|+.|++..|.|+|.|+|++   +++ +.+++.++.+...+.+ +| .++||+|+||||+||+          ||..+.
T Consensus       607 ~~l~~~~~~~~~w~~~StyI~---~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~g  683 (876)
T TIGR01341       607 NSIKTPSGDTYSWDEKSTYIR---LPPFFEEMKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERG  683 (876)
T ss_pred             cccCCCCCCccccCCCCCccc---CCCCCCccccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcC
Confidence            456788999999999999999   555 7777776666555644 67 7889999999999996          688888


Q ss_pred             CCchhhHHHhh----------hhhcCC--C--------CCccccccccCCccc------------ceeEEEecCccCCCC
Q 025777           97 SNPDEYEKLGS----------YALIGL--P--------ATYTTRFIDENETKT------------KYKIIIAGGNFGCGS  144 (248)
Q Consensus        97 ~~p~d~~~l~~----------~a~~~l--~--------~~f~~r~~~~G~~~~------------~~~IIVaG~NFG~GS  144 (248)
                      ..|.|++.||.          +.|..+  +        +++ +++.+.|+..+            .-.|||||+||||||
T Consensus       684 v~~~dfnsygsrRgN~evm~rgtFanir~~N~l~~g~egg~-t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GS  762 (876)
T TIGR01341       684 VSRRDFNSYGSRRGNHEVMMRGTFANIRIKNLMVKGKEGGY-TVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGS  762 (876)
T ss_pred             CChhhcccccccccCHHHHHHhhcccchhhhhcccCccCce-eEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCC
Confidence            88888888877          233322  2        344 56666776642            127999999999999


Q ss_pred             CcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhhc--CCCCEEEE-Ec---cCc-E--EEe-CCC
Q 025777          145 SREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEEC--STGDVVTI-EI---AES-R--LIN-HTT  213 (248)
Q Consensus       145 SREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~~--~~Gd~I~I-DL---~~~-~--v~~-~~~  213 (248)
                      |||||+|+++++||+||||+||+|||++||+|+| +|||++. ...++.+  ..+|+++| ++   ..+ .  ++. ..+
T Consensus       763 SRe~Aa~~~~~lGv~avia~sf~rI~~~N~~~~G-ilpl~~~~~~~~~~l~l~g~e~~~i~~~~~l~pg~~v~v~~~~~~  841 (876)
T TIGR01341       763 SRDWAAKGTKLLGVKAVIAESFERIHRSNLVGMG-VIPLQFPQGEDAETLGLTGDETIDIDGIKDLKPGKEVTVTFTNSK  841 (876)
T ss_pred             cHHHHHHHHHHhCCcEEEEccHHHHHHhhHhhcC-cceEecCCCCCHHHhCCCCCCeEEEcCccccCCCCEEEEEEEcCC
Confidence            9999999999999999999999999999999999 7999864 3456664  55788888 33   222 2  232 235


Q ss_pred             C--eEEEEeeCCC---hHHHHHhCCHHHHHHHh
Q 025777          214 G--KEYKLKPIGD---LGPVIDAGGIFAYARKT  241 (248)
Q Consensus       214 G--~~~~~~~~~~---~~~ii~aGGll~y~kk~  241 (248)
                      |  ++|.+....+   +.+++++||+|||++++
T Consensus       842 g~~~~~~~~~r~dt~~E~~~~~~GGiL~yv~r~  874 (876)
T TIGR01341       842 GEKITFKCVLRIDTEVELDYYKHGGILQYVLRK  874 (876)
T ss_pred             CCEEEEEEEEecCCHHHHHHHHcCCHHHHHHHh
Confidence            6  4566655543   68999999999998764

This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.

>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]

Probab=100.00  E-value=8.4e-38  Score=294.83  Aligned_cols=240  Identities=52%  Similarity=0.747  Sum_probs=186.8

Q ss_pred             cccccccccCCCCCCCCcccCCcccccC---CCCCCCccccce----eeccCCCCccCcc--CCCCCCceEEeEEEecCC
Q 025777            9 FGANTTFTSSPIPKTKPLFIPHSLKFTT---GNGRAAVTFQRA----VSVIPKATSADSR--ATKEPTATFHGLCYVVGD   79 (248)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~i~G~v~~lgD   79 (248)
                      .+..+.|..-+...+..++.+.+|.+-.   ....+..+....    ...++|..+....  ......+++++.+..+.|
T Consensus       216 ~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~sSl~m~~F~tLc~vv~d  295 (502)
T KOG0454|consen  216 GGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTSSLGMETFHTLCGVVAD  295 (502)
T ss_pred             cccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccccccCcceeeeehhhhh
Confidence            4555666555555555666566666631   222223222221    1134443322111  112335678899988999


Q ss_pred             CCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhhHHhcCcc
Q 025777           80 NIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCS  159 (248)
Q Consensus        80 nIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al~~lGI~  159 (248)
                      |||||+|||++|++....++.+++.+..+.+.++..+|.++|+.++|...+|.|+|+|+|||||||||||+|+|.+.|++
T Consensus       296 NiDTD~IIP~qfltli~~~~~~~~~f~~~~~dg~~k~~~~dFv~~vE~~~~~siii~~DNFGCGSSREHAPv~L~~~Gak  375 (502)
T KOG0454|consen  296 NIDTDQIIPAQFLTLIPSTGLILSCFYEVALDGLPKSFVTDFVLPVEPLRKYSIIIGGDNFGCGSSREHAPVCLGAAGAK  375 (502)
T ss_pred             hCCcCcccChhhhcccccchhhhhhhhhheecCCchhhccceeccccccceeEEEeccCCcccccccccCcchhhhcccc
Confidence            99999999999999999888888889999998887778899999999999999999999999999999999999999999


Q ss_pred             EEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccC---cEEEeCCCCeEE-EEeeCCChHHHHHhCCHH
Q 025777          160 AVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAE---SRLINHTTGKEY-KLKPIGDLGPVIDAGGIF  235 (248)
Q Consensus       160 aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~---~~v~~~~~G~~~-~~~~~~~~~~ii~aGGll  235 (248)
                      +|||+||+||||||++.+|++.|+.....+++++..||+.+|.+..   ++.+++++|+.+ .++|..+.-..+-+||+.
T Consensus       376 aivA~Sya~IFfrN~~atG~l~~~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad~I~  455 (502)
T KOG0454|consen  376 AIVAPSYARIFFRNSVATGELPPLPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDADGIF  455 (502)
T ss_pred             eecchhHHHHHHHhHHhcCCccCCCceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCchHHH
Confidence            9999999999999999999877777666778889999998887644   357778888887 777877777788999999


Q ss_pred             HHHHHhCCCcCCC
Q 025777          236 AYARKTGMIASRN  248 (248)
Q Consensus       236 ~y~kk~g~~~~~~  248 (248)
                      .|++|+|||++.|
T Consensus       456 ~~~~ke~mIss~~  468 (502)
T KOG0454|consen  456 AYARKEGMISSTE  468 (502)
T ss_pred             Hhhccccccchhh
Confidence            9999999999753

>PRK09277 aconitate hydratase; Validated

Probab=100.00  E-value=4.5e-37  Score=312.19  Aligned_cols=207  Identities=25%  Similarity=0.351  Sum_probs=156.8

Q ss_pred             CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceE-EeEE-EecCCCCCcccccccc----------ccccCC
Q 025777           30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATF-HGLC-YVVGDNIDTDQIIPAE----------YLTLVP   96 (248)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i-~G~v-~~lgDnIdTD~IiPa~----------~l~~~~   96 (248)
                      ..++.|.+..|.|+|.|+|++   +++ +.+.+.+..+...+ ..+| .++||+|+||||+||+          ||..+.
T Consensus       617 ~~l~~~~~~~~~w~~~StyI~---~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~g  693 (888)
T PRK09277        617 NAIEVPEGPLYDWDPDSTYIR---NPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHG  693 (888)
T ss_pred             ccCCCCCCCccccCCCCCccc---CCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcC
Confidence            346778899999999999999   555 77666655554444 5577 7889999999999997          788778


Q ss_pred             CCchhhHHHhh----------hhhc--CC--------CCCccccccccCCccc------------ceeEEEecCccCCCC
Q 025777           97 SNPDEYEKLGS----------YALI--GL--------PATYTTRFIDENETKT------------KYKIIIAGGNFGCGS  144 (248)
Q Consensus        97 ~~p~d~~~l~~----------~a~~--~l--------~~~f~~r~~~~G~~~~------------~~~IIVaG~NFG~GS  144 (248)
                      ..|.|++.||.          ..|.  ++        .+.| +++.+.|+..+            .-.|||||+||||||
T Consensus       694 v~~~dfnsygsrRgN~evm~RgtfaNir~~N~l~~g~egg~-t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GS  772 (888)
T PRK09277        694 VEPKDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGVEGGY-TRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGS  772 (888)
T ss_pred             CChhhccccccccccchhhhheeccccchhhhcccCCccce-EEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCC
Confidence            88888888876          2222  21        2335 56666665532            128999999999999


Q ss_pred             CcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhhc--CCCCEEEEE-cc---Cc-EEEe---CCC
Q 025777          145 SREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEEC--STGDVVTIE-IA---ES-RLIN---HTT  213 (248)
Q Consensus       145 SREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~~--~~Gd~I~ID-L~---~~-~v~~---~~~  213 (248)
                      |||||+|+++++||+||||+||+|||++||+|+| +|||++. ...++.+  ..+|.++|+ ++   .+ .++.   +.+
T Consensus       773 SRe~Aa~~~~~lgi~avia~sf~rI~~~Nli~~G-ilpl~~~~~~~~~~lgl~g~e~~~i~~l~~l~p~~~v~v~~~~~~  851 (888)
T PRK09277        773 SRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMG-VLPLQFKPGESRKTLGLDGTETFDIEGLEDLKPGATVTVVITRAD  851 (888)
T ss_pred             cHHHHHHHHHHhCCcEEEEecHHHHHHhhHhhcC-cceeecCCcccHHHhCCCCCceEEEcCcccCCCCCEEEEEEEeCC
Confidence            9999999999999999999999999999999999 7899864 3467765  677888883 42   22 2321   234


Q ss_pred             C--eEEEEeeCCC---hHHHHHhCCHHHHHHHh
Q 025777          214 G--KEYKLKPIGD---LGPVIDAGGIFAYARKT  241 (248)
Q Consensus       214 G--~~~~~~~~~~---~~~ii~aGGll~y~kk~  241 (248)
                      |  ++|.+....+   +.+++++||+|||++++
T Consensus       852 G~~~~~~~~~r~dt~~Ei~y~~~GGiL~yv~r~  884 (888)
T PRK09277        852 GEVVEFPVLCRIDTAVEVDYYRNGGILQYVLRD  884 (888)
T ss_pred             CCEEEEEEEEecCCHHHHHHHHcCCHHHHHHHH
Confidence            5  5566665543   68999999999998764

>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins

Probab=100.00  E-value=4.7e-37  Score=238.19  Aligned_cols=89  Identities=58%  Similarity=0.971  Sum_probs=81.7

Q ss_pred             ecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhhHHh
Q 025777           76 VVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGA  155 (248)
Q Consensus        76 ~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al~~  155 (248)
                      ++|||||||+|+|++|+                                +      +|||+|+|||||||||||+|++++
T Consensus         1 ~~gd~idTD~i~p~~~~--------------------------------~------~ilVaG~nfG~GSSRE~A~~al~~   42 (91)
T cd01577           1 LFGDNIDTDQIIPARFL--------------------------------G------DIIVAGKNFGCGSSREHAPWALKD   42 (91)
T ss_pred             CCCCccchhhcchHHHc--------------------------------C------CEEEecCcccCCCcHHHHHHHHHH
Confidence            47999999999999997                                2      599999999999999999999999


Q ss_pred             cCccEEEechhhHHHhhchhhcCceeeeecchhhhh--hcCCCCEEEEEc
Q 025777          156 AGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE--ECSTGDVVTIEI  203 (248)
Q Consensus       156 lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~--~~~~Gd~I~IDL  203 (248)
                      +||++|||+||++||+|||+|+| +||+++++...+  ..++|++|+||+
T Consensus        43 ~Gi~avia~sFa~If~~N~~n~G-llp~~~~~~~~~~~~~~~g~~i~vdl   91 (91)
T cd01577          43 AGIRAVIAESFARIFFRNAINNG-LLPVTLADEDVEEVEAKPGDEVEVDL   91 (91)
T ss_pred             hCCCEEEEchHHHHHHhhHhhCC-CcceeeChhhhhHhhcCCCCEEEEeC
Confidence            99999999999999999999999 788887766666  578999999986

3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.

>PRK11413 putative hydratase; Provisional

Probab=100.00  E-value=1.1e-35  Score=299.26  Aligned_cols=169  Identities=22%  Similarity=0.271  Sum_probs=133.4

Q ss_pred             CCCceEEeEE-EecCCCCC-cccccccc-ccccCCCCchhhHHHhhhhhcCCCCCccccccc---------cCC------
Q 025777           65 EPTATFHGLC-YVVGDNID-TDQIIPAE-YLTLVPSNPDEYEKLGSYALIGLPATYTTRFID---------ENE------  126 (248)
Q Consensus        65 ~~~~~i~G~v-~~lgDnId-TD~IiPa~-~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~---------~G~------  126 (248)
                      .....+..+| .+++|||+ ||||+|++ ++..|+ +   .+.+++|+|++.+|+|..|...         .|.      
T Consensus       532 ~l~~~~~~kv~~k~~D~itTTD~i~paG~~l~~Rs-n---~~~is~~~~~~~d~~~~~ra~~~~~~~~~~~~g~~~~~~~  607 (751)
T PRK11413        532 ALTDNILLKVCSKILDPVTTTDELIPSGETSSYRS-N---PLGLAEFTLSRRDPGYVGRSKAVAELENQRLAGNVSELTE  607 (751)
T ss_pred             CCCCcEEEEEEEEeCCCCccccccccCCCcccccc-C---HHHHhhhhccccChhhHHHHHHHhhhhhhhhcCCcHHHHH
Confidence            4456788888 78999997 99999998 566654 3   5789999999999999755433         222      


Q ss_pred             ----------------cccceeEEEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhh-chhhcCceeeeecchhh
Q 025777          127 ----------------TKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFR-NSVATGEIYPLDSEARL  189 (248)
Q Consensus       127 ----------------~~~~~~IIVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~r-N~in~GlilPL~~~~~~  189 (248)
                                      ...+..++|+|+|||||||||||+++++++|++||||+||||||+| ||+|+| +|||+++.. 
T Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~iv~~~nyG~GSSREhAAla~r~LGi~AVIAkSFARIf~RsNlIN~G-ilpL~f~~~-  685 (751)
T PRK11413        608 VFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWG-MLPFQMAEE-  685 (751)
T ss_pred             HHHhhhhccccccccccccCceEEEEEeCCCCCccHHHHHHHHHHhCceEEEEeeehHHHHhhhhhhcC-ccceecCch-
Confidence                            0112368888899999999999999999999999999999999777 999999 789987543 


Q ss_pred             hhhcCCCCEEEEEcc-----------CcEEEeCC---CCeEEEEeeCCC-hHHHHHhCCHHHHHHH
Q 025777          190 CEECSTGDVVTIEIA-----------ESRLINHT---TGKEYKLKPIGD-LGPVIDAGGIFAYARK  240 (248)
Q Consensus       190 ~~~~~~Gd~I~IDL~-----------~~~v~~~~---~G~~~~~~~~~~-~~~ii~aGGll~y~kk  240 (248)
                       ..+++||+|+||..           .+++++.+   .+.++.+.+.++ +++||++||++||+|+
T Consensus       686 -~~i~~GD~l~id~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~eil~aGGllny~k~  750 (751)
T PRK11413        686 -PTFEVGDYIYIPGIRAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGCLINYNKN  750 (751)
T ss_pred             -hhCCCCCEEEEechhhhhhcCCCceeEEEEeCCCceeeEEEEeCCCCHHHHHHHHcCCHHHHhhc
Confidence             27999999999854           23455443   234555556666 7999999999999986

>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial

Probab=100.00  E-value=6.1e-36  Score=301.56  Aligned_cols=190  Identities=21%  Similarity=0.213  Sum_probs=136.5

Q ss_pred             CCCCCCCccccceeeccCCC-CccCccCCCCCCceEE-eEE-EecCCCCCcccccccc-ccccCCCCchhhHHHhhhhhc
Q 025777           36 TGNGRAAVTFQRAVSVIPKA-TSADSRATKEPTATFH-GLC-YVVGDNIDTDQIIPAE-YLTLVPSNPDEYEKLGSYALI  111 (248)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~-G~v-~~lgDnIdTD~IiPa~-~l~~~~~~p~d~~~l~~~a~~  111 (248)
                      ....|.|.|.++|.+   +. +....     +...+. .+| +++||||+||||+||+ ||..++.    ++.+.+|.|.
T Consensus       520 ~~~~~~~~p~s~~i~---~~~~f~~~-----~~~~i~~a~vLlk~gd~iTTDHIsPAG~~L~~rg~----~~~i~~n~~~  587 (745)
T TIGR01340       520 PNVEVAVSPSSDRLQ---LLEPFEPW-----NGKDLSGLRVLIKVTGKCTTDHISAAGPWLKYKGH----LDNISNNTLI  587 (745)
T ss_pred             CCceEEeCCCCCCCC---CCCCCCCC-----CcCCccCCeEEEEECCCcChhcccccchhHhhcCC----hhhhhcceec
Confidence            445678999999998   43 34321     334455 677 7899999999999998 8887763    5667788876


Q ss_pred             CCCCCccc----cccccCCcc---------cc---eeEEEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchh
Q 025777          112 GLPATYTT----RFIDENETK---------TK---YKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSV  175 (248)
Q Consensus       112 ~l~~~f~~----r~~~~G~~~---------~~---~~IIVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~i  175 (248)
                      +..+.+..    .+.+.|+..         +.   ..|||||+|||||||||||+++++++||+||||+||+|||++||+
T Consensus       588 ~~~n~~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nli  667 (745)
T TIGR01340       588 GAVNAETGEVNKAYDLDGSKGTIPELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLK  667 (745)
T ss_pred             ccccccCCceeEEEcCCCCccchHHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhh
Confidence            42111100    011122221         01   159999999999999999999999999999999999999999999


Q ss_pred             hcCceeeeec-chhhhhhcCCCCEEEEE-ccC-------cEEE--e-CCCC--eEEEEeeCC-C-hHHHHHhCCHHHHH
Q 025777          176 ATGEIYPLDS-EARLCEECSTGDVVTIE-IAE-------SRLI--N-HTTG--KEYKLKPIG-D-LGPVIDAGGIFAYA  238 (248)
Q Consensus       176 n~GlilPL~~-~~~~~~~~~~Gd~I~ID-L~~-------~~v~--~-~~~G--~~~~~~~~~-~-~~~ii~aGGll~y~  238 (248)
                      |+| +|||++ ++.+++.++.||++++. +++       +.+.  . +.+|  .+|.+.... + +.+++++||+|||+
T Consensus       668 n~G-ilpl~~~~~~~~~~i~~gd~~~~~~l~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~lt~~E~~~~~aGGiLny~  745 (745)
T TIGR01340       668 KQG-VLPLTFANEADYDKIQPGDEVATLNLYEMLKNGGGGEVDLRVTKKNGKVFEIKLKHTVSKDQIGFFKAGSALNLM  745 (745)
T ss_pred             hcC-ceeEEecCCccHhhcCCCCEEEEcChhhccccCCCCeEEEEEEeCCCcEEEEEEEeeCCHHHHHHHHcCCcccCC
Confidence            999 789987 46678889999998883 421       1232  2 2234  455555433 2 68999999999985

This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.

>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent

Probab=100.00  E-value=3.2e-35  Score=297.65  Aligned_cols=202  Identities=25%  Similarity=0.358  Sum_probs=150.8

Q ss_pred             ccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEEe-EE-EecCCCCCcccccccc----------ccccCCCC
Q 025777           32 LKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFHG-LC-YVVGDNIDTDQIIPAE----------YLTLVPSN   98 (248)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~G-~v-~~lgDnIdTD~IiPa~----------~l~~~~~~   98 (248)
                      +..|.+..|+|+|.|+|++   +++ ..+++   .+...+.+ +| .++||+|+||||+||+          ||..+...
T Consensus       591 ~~~~~~~~~~w~~~Styi~---~pp~f~~~~---~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~  664 (858)
T TIGR02333       591 TQSAVSPLYDWRPMSTYIR---RPPYWEGAL---AGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLP  664 (858)
T ss_pred             cccCcCCCccCCCCCceec---CCCCccCCC---CcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCC
Confidence            6778899999999999999   555 66552   33345555 67 6889999999999874          99999999


Q ss_pred             chhhHHHhh----h--------hhcCC------------CCCccccccccCCccc------ce------eEEEecCccCC
Q 025777           99 PDEYEKLGS----Y--------ALIGL------------PATYTTRFIDENETKT------KY------KIIIAGGNFGC  142 (248)
Q Consensus        99 p~d~~~l~~----~--------a~~~l------------~~~f~~r~~~~G~~~~------~~------~IIVaG~NFG~  142 (248)
                      |.|++.||.    |        ++.++            .+.| +++.+.|+..+      .|      .|||||+||||
T Consensus       665 ~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~l~~~~g~~~~g~~-t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~  743 (858)
T TIGR02333       665 EEDFNSYATHRGDHLTAQRATFANPKLFNEMVKNDGSVKQGSL-ARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQ  743 (858)
T ss_pred             hhhcccccccccchHHHhhcccccchhhhhhccccCccccCce-eEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCC
Confidence            999999875    1        22221            1223 44555665542      11      79999999999


Q ss_pred             CCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhh--cCCCCEEEE--EccCc-E--EE-eCCC
Q 025777          143 GSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEE--CSTGDVVTI--EIAES-R--LI-NHTT  213 (248)
Q Consensus       143 GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~--~~~Gd~I~I--DL~~~-~--v~-~~~~  213 (248)
                      |||||||+|+++++||++|||+||+|||++||+|+| +|||++. ...++.  +...|.++|  ++..+ .  ++ .+.+
T Consensus       744 GSSRe~Aa~~~~~lGv~avia~sf~rI~~~Nl~~~G-~lpl~f~~~~~~~~l~l~g~e~~~i~~~~~p~~~~~v~~~~~~  822 (858)
T TIGR02333       744 GSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLVGMG-VLPLEFKPGTNRHTLGLDGTETFDVVGEITPRADLTLVVTRKN  822 (858)
T ss_pred             CCcHHHHHHHHHHhCceEEEEccHHHHHHhhhhhcC-cceEEeCCCCChhhcCCCCCeeEEeccCCCCCCeEEEEEEeCC
Confidence            999999999999999999999999999999999999 7999864 345666  456677777  23222 2  22 2345


Q ss_pred             Ce--EEEEeeCCC---hHHHHHhCCHHHHHHHh
Q 025777          214 GK--EYKLKPIGD---LGPVIDAGGIFAYARKT  241 (248)
Q Consensus       214 G~--~~~~~~~~~---~~~ii~aGGll~y~kk~  241 (248)
                      |+  +|.+....+   +.+++++||+|||+.++
T Consensus       823 g~~~~~~~~~r~dt~~ei~y~~~GgiL~~v~~~  855 (858)
T TIGR02333       823 GEKLEVPVTCRLDTAEEVSVYEAGGVLQRFAQD  855 (858)
T ss_pred             CCEEEEEEEEEcCCHHHHHHHHcCCHHHHHHHH
Confidence            64  455555543   57999999999998764

Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).

>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain

Probab=100.00  E-value=9.9e-36  Score=248.44  Aligned_cols=124  Identities=26%  Similarity=0.332  Sum_probs=98.9

Q ss_pred             ecCCCCCcccccccc-ccccCCCCchhhHHHhhhhhcCCCCCcccc-----ccccCCcc-----------cc-eeEEEec
Q 025777           76 VVGDNIDTDQIIPAE-YLTLVPSNPDEYEKLGSYALIGLPATYTTR-----FIDENETK-----------TK-YKIIIAG  137 (248)
Q Consensus        76 ~lgDnIdTD~IiPa~-~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r-----~~~~G~~~-----------~~-~~IIVaG  137 (248)
                      |+.+||+||||+||+ ||+.++.    .+.+++|+|++.+..|..+     ....|+..           .+ ..|||||
T Consensus         1 k~~g~~tTDhI~pag~~l~~R~~----l~~is~~~~~~a~n~~~~~~~~~~~~~~g~~~~~~~~A~~yk~~g~~~iIVaG   76 (149)
T cd01578           1 KAKGKCTTDHISAAGPWLKYRGH----LDNISNNLLIGAINAENGKANSVKNQVTGEYGPVPDTARDYKAHGIKWVVIGD   76 (149)
T ss_pred             CCCCccCcccccCCCcccccccC----HHHHHHHHhhhhhhhhccccccccccCCCcccchHHHHHHHHHcCCCeEEEcc
Confidence            467899999999998 8888764    7889999999833222100     01111110           11 2699999


Q ss_pred             CccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeec-chhhhhhcCCCCEEEE-Ecc
Q 025777          138 GNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDS-EARLCEECSTGDVVTI-EIA  204 (248)
Q Consensus       138 ~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~-~~~~~~~~~~Gd~I~I-DL~  204 (248)
                      +|||||||||||+|+++++||+||||+||+|||++||+|+| +|||++ ++.+++.++.||+|+| +++
T Consensus        77 ~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~G-ilpl~f~~~~~~~~i~~gd~i~i~~l~  144 (149)
T cd01578          77 ENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQG-LLPLTFADPADYDKIHPDDKVDILGLT  144 (149)
T ss_pred             CccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcC-CceEEecChHHHHhcCCCCEEEEecCc
Confidence            99999999999999999999999999999999999999999 789975 5678899999999999 454

Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.

>cd01576 AcnB_Swivel Aconitase B swivel domain

Probab=100.00  E-value=1.6e-35  Score=243.17  Aligned_cols=112  Identities=22%  Similarity=0.311  Sum_probs=94.5

Q ss_pred             EecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCcccc------ccccCCcccceeEEEecCccCCCCCcCc
Q 025777           75 YVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTR------FIDENETKTKYKIIIAGGNFGCGSSREH  148 (248)
Q Consensus        75 ~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r------~~~~G~~~~~~~IIVaG~NFG~GSSREh  148 (248)
                      ++++||||||+|+|++|+..       ++.+..|+|+++++.|...      ...+|.     .|+|+|+||||||||||
T Consensus         1 ~~~gddIdTD~i~P~~y~~~-------~~~~~~ha~~~l~~~f~~~~~~~~~~~~~g~-----~ilvaG~nFG~GSSRe~   68 (131)
T cd01576           1 FKVPGETNTDDLSPAPDAWS-------RPDIPLHALAMLKNKREGEIVAIAQLKPKGH-----PVAYVGDVVGTGSSRKS   68 (131)
T ss_pred             CcCCCCCchhcccChhhcCC-------cchHHHHHhccCCcccCchhhhhhhcccCCC-----eEEEECCceeeccchHH
Confidence            47899999999999999863       3468889999998887431      233342     49999999999999999


Q ss_pred             HhhhHH------------hcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEE
Q 025777          149 APVALG------------AAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIE  202 (248)
Q Consensus       149 Aa~al~------------~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~ID  202 (248)
                      |+++|+            .+|++||||+||+|||||||+|+| ++|++.+   ++.+++||+|+||
T Consensus        69 A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~G-l~~i~~~---~~~~~~GD~l~vD  130 (131)
T cd01576          69 ATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSG-ALPIQLD---VSVLDMGDILNID  130 (131)
T ss_pred             HHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcC-CceEEeC---HHHcCCCCEEEeC
Confidence            999998            779999999999999999999999 5677654   5668999999987

Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.

>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-34  Score=280.60  Aligned_cols=207  Identities=28%  Similarity=0.357  Sum_probs=158.4

Q ss_pred             CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEE-eEE-EecCCCCCcccccccc----------ccccCC
Q 025777           30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFH-GLC-YVVGDNIDTDQIIPAE----------YLTLVP   96 (248)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~-G~v-~~lgDnIdTD~IiPa~----------~l~~~~   96 (248)
                      ..|+.|+..+|+|+|+|+|+.   .++ +.++.+++..+..+. ..| +.|||.|+||||+||+          ||..+.
T Consensus       627 n~L~~p~~~Ly~Wd~~STYI~---~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg  703 (892)
T KOG0452|consen  627 NQLEVPSSKLYPWDPKSTYIK---EPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERG  703 (892)
T ss_pred             hhccCCccceeccCCCCceec---CCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcC
Confidence            568899999999999999999   666 899999988877774 466 6789999999999995          899999


Q ss_pred             CCchhhHHHhh------------hhhcCCC------CCccccccccCCccc------ce------eEEEecCccCCCCCc
Q 025777           97 SNPDEYEKLGS------------YALIGLP------ATYTTRFIDENETKT------KY------KIIIAGGNFGCGSSR  146 (248)
Q Consensus        97 ~~p~d~~~l~~------------~a~~~l~------~~f~~r~~~~G~~~~------~~------~IIVaG~NFG~GSSR  146 (248)
                      .+|+|++.||+            |+++++.      .+-.+-+++.||..+      +|      .||+||+.|||||||
T Consensus       704 ~tprdFNsYGsRRGND~vMaRGTFANIrlvNkl~~k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSR  783 (892)
T KOG0452|consen  704 LTPRDFNSYGSRRGNDAVMARGTFANIRLVNKLLSKVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSR  783 (892)
T ss_pred             CChhhccccccccCchhhhhcccchhhHHHHHHhcccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCcc
Confidence            99999999987            3333221      111134566776643      12      799999999999999


Q ss_pred             CcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchh-hhhh--cCCCCEEEEEccC------cEEEe-CCCCeE
Q 025777          147 EHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR-LCEE--CSTGDVVTIEIAE------SRLIN-HTTGKE  216 (248)
Q Consensus       147 EhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~-~~~~--~~~Gd~I~IDL~~------~~v~~-~~~G~~  216 (248)
                      +||++++..+||+|||||||+|||+.|++.+| |+||++.+. ..+.  +.-.+..+|.+.+      +.|.+ .++|+.
T Consensus       784 DWAAKGP~LlGvKAViaeS~ErIHrsnLvGmG-IiPl~f~~Ge~AdtLgLtG~E~yti~lP~~~lkPgq~i~v~~dtGk~  862 (892)
T KOG0452|consen  784 DWAAKGPFLLGVKAVIAESYERIHRSNLVGMG-IIPLQFLPGEDADTLGLTGRERYTIHLPENILKPGQDITVTTDTGKV  862 (892)
T ss_pred             chhhcCchhhhhHHHHHHHHHHHHhhccccce-eeeeeecCCCChhhcCcccceeEEEECCcccCCCCceEEEEecCCcE
Confidence            99999999999999999999999999999999 899986432 1221  2222334444322      12222 236999


Q ss_pred             EEEeeCCC---hHHHHHhCCHHHHHHH
Q 025777          217 YKLKPIGD---LGPVIDAGGIFAYARK  240 (248)
Q Consensus       217 ~~~~~~~~---~~~ii~aGGll~y~kk  240 (248)
                      |.+...+|   ++.++++||||||+.+
T Consensus       863 F~~~~rFdteVeltyy~~GGiL~y~iR  889 (892)
T KOG0452|consen  863 FVCTLRFDTEVELTYYKNGGILNYMIR  889 (892)
T ss_pred             EEEEEEecceEEEEEEecCCcHHHHHh
Confidence            99888875   4789999999999643

>COG1048 AcnA Aconitase A [Energy production and conversion]

Probab=100.00  E-value=2e-33  Score=282.56  Aligned_cols=205  Identities=24%  Similarity=0.310  Sum_probs=149.3

Q ss_pred             CcccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCceEEe-EE-EecCCCCCcccccc----------ccccccCC
Q 025777           30 HSLKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFHG-LC-YVVGDNIDTDQIIP----------AEYLTLVP   96 (248)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~G-~v-~~lgDnIdTD~IiP----------a~~l~~~~   96 (248)
                      ..+..|++..+.|.+.++|++   +++ .....+...+   ++| |+ .+++|+|+||||+|          ++||....
T Consensus       598 ~~~~~~~~~~y~w~~~styi~---~pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~g  671 (861)
T COG1048         598 NAIEVPEGPLYDWPNISTYIR---LPPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHG  671 (861)
T ss_pred             ccccCCCcCcccCCCcCcccc---CCCccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcC
Confidence            347789999999999999999   666 7777777666   555 66 67899999999999          45888888


Q ss_pred             CCchhhHHHhh----------hhhcC--C-------CCCccccccccCCccc---------ceeEEEecCccCCCCCcCc
Q 025777           97 SNPDEYEKLGS----------YALIG--L-------PATYTTRFIDENETKT---------KYKIIIAGGNFGCGSSREH  148 (248)
Q Consensus        97 ~~p~d~~~l~~----------~a~~~--l-------~~~f~~r~~~~G~~~~---------~~~IIVaG~NFG~GSSREh  148 (248)
                      ..+.|++.|+.          -+|..  +       .++| +++.+.|++++         ...|||||+|||.||||||
T Consensus       672 v~~~dfNsygsrrgnhevm~r~tfaNir~~n~~~~~~gg~-t~~~p~g~iydaa~~yk~~g~p~vvvaG~~YG~GSSRdw  750 (861)
T COG1048         672 VERIDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGEGGY-TIHQPSGEIYDAAMKYKEEGIPLVVVAGKNYGTGSSRDW  750 (861)
T ss_pred             CCcccccchhcccccHHHhhhhhhcccccccccccccCcc-eeecCCchhHHHHHHHHHcCCCeEEEeeccCCCCchHHH
Confidence            87888888874          12221  1       1233 45555564421         1389999999999999999


Q ss_pred             HhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchh-hhhhcCCCCEEEEE--ccC-----cE--EE-eCCCCeEE
Q 025777          149 APVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEAR-LCEECSTGDVVTIE--IAE-----SR--LI-NHTTGKEY  217 (248)
Q Consensus       149 Aa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~-~~~~~~~Gd~I~ID--L~~-----~~--v~-~~~~G~~~  217 (248)
                      ||++++.+||+|||||||+|||++|++++| +|||++.+. .++.+.-.+..+||  ..+     .+  |. .+.+|.+.
T Consensus       751 AAkg~~lLGv~AVIAeSFeRIHrSNLi~mG-vLPLqf~~~~~~~~l~l~g~e~~~i~~~~~~~p~~~~~v~~~~~dg~~~  829 (861)
T COG1048         751 AAKGPRLLGVKAVIAESFERIHRSNLIGMG-VLPLQFPNGETYDKLGLDGEETIDIGGLENLKPGATVTVTVTRGDGPVE  829 (861)
T ss_pred             HhhCchhcCeeeeeehhHHHHHHhhcccce-eeeeeccCCCChhhcCCCCceeEeecccccCCCCceEEEEEEcCCCceE
Confidence            999999999999999999999999999999 899998643 45665443333443  222     12  22 23355443


Q ss_pred             EEee--CCC---hHHHHHhCCHHHHHHHhC
Q 025777          218 KLKP--IGD---LGPVIDAGGIFAYARKTG  242 (248)
Q Consensus       218 ~~~~--~~~---~~~ii~aGGll~y~kk~g  242 (248)
                      .+..  ..+   +.+++++||+|||++++-
T Consensus       830 ~~~~~~r~dt~~E~~y~k~GGiL~~v~~~~  859 (861)
T COG1048         830 EFPVLCRIDTAEEIEYYKAGGILNYVKRDL  859 (861)
T ss_pred             EEeeeeecCCHHHHHHHHcCchHHHHHHHh
Confidence            3332  222   679999999999998753

>cd00404 Aconitase_swivel Aconitase swivel domain

Probab=100.00  E-value=1.4e-33  Score=217.51  Aligned_cols=86  Identities=45%  Similarity=0.663  Sum_probs=78.9

Q ss_pred             ecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhhHHh
Q 025777           76 VVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGA  155 (248)
Q Consensus        76 ~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al~~  155 (248)
                      +++||||||||+|++                                  +      +|||+|+|||||||||||+|++++
T Consensus         1 ~~~~~~~td~~~p~~----------------------------------~------~iiVaG~nfG~GSSRE~A~~al~~   40 (88)
T cd00404           1 KVAGNITTDHISPAG----------------------------------P------GVVIGDENYGTGSSREHAALELRL   40 (88)
T ss_pred             CcccccccccccCCC----------------------------------C------EEEEecCCeecCCCHHHHHHHHHH
Confidence            468999999999997                                  2      699999999999999999999999


Q ss_pred             cCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhhcCCCCEEEEE
Q 025777          156 AGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEECSTGDVVTIE  202 (248)
Q Consensus       156 lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~~~~Gd~I~ID  202 (248)
                      +|+++|||+||+|||+||++|+| ++|++++ ..+++.+++||+|+||
T Consensus        41 ~Gi~aVia~sfa~If~rN~~n~G-ll~l~~~~~~~~~~i~~gd~l~id   87 (88)
T cd00404          41 LGGRAVIAKSFARIFFRNLVDQG-LLPLEFADPEDYLKLHTGDELDIY   87 (88)
T ss_pred             hCCCEEEEeCHHHHHHhhHHhcC-CceEEecCcchhhhcCCCCEEEeC
Confidence            99999999999999999999999 6888764 4578889999999987

Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.

>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain

Probab=99.98  E-value=2.3e-33  Score=237.89  Aligned_cols=110  Identities=37%  Similarity=0.538  Sum_probs=89.8

Q ss_pred             ecCCCCCcccccccc----------ccccCCCCchhhHHHhhh------------hhcCC--------CCCccccccccC
Q 025777           76 VVGDNIDTDQIIPAE----------YLTLVPSNPDEYEKLGSY------------ALIGL--------PATYTTRFIDEN  125 (248)
Q Consensus        76 ~lgDnIdTD~IiPa~----------~l~~~~~~p~d~~~l~~~------------a~~~l--------~~~f~~r~~~~G  125 (248)
                      .|||+|+||||+||+          ||......|.|++.|+..            ++..+        .+.+ +++.+.|
T Consensus         1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~-t~~~p~g   79 (171)
T cd01580           1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGT-THHPPTG   79 (171)
T ss_pred             CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCc-EEECCCC
Confidence            379999999999998          999889999999999772            22111        1233 4455666


Q ss_pred             Ccccc------e------eEEEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecch
Q 025777          126 ETKTK------Y------KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA  187 (248)
Q Consensus       126 ~~~~~------~------~IIVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~  187 (248)
                      +..+-      |      .|||||+|||||||||||+|+++++||+||||+||+|||++||+|+| +|||++.+
T Consensus        80 ~~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~G-llpl~~~~  152 (171)
T cd01580          80 EVMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMG-ILPLQFPP  152 (171)
T ss_pred             cEeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcC-cceEEeCC
Confidence            55321      1      59999999999999999999999999999999999999999999999 78998643

This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.

>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain

Probab=99.97  E-value=9.7e-33  Score=226.98  Aligned_cols=115  Identities=41%  Similarity=0.607  Sum_probs=84.6

Q ss_pred             CCCceEEeEEEe-cCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcc---------c--cee
Q 025777           65 EPTATFHGLCYV-VGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETK---------T--KYK  132 (248)
Q Consensus        65 ~~~~~i~G~v~~-lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~---------~--~~~  132 (248)
                      +.+.+.+|.+.. +.+|+|||+|+|++|+....     ...++.++|.+...... ...+.++..         +  +.+
T Consensus         2 ~~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~-----~~~l~~~l~~~~r~~~~-~~~~~~~~~~f~~~~~~~~~~~~~   75 (131)
T PF00694_consen    2 EKFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFA-----NTGLGNILFDDWRYGKT-GYLPDGEKPDFYLNAPRYKVEGGD   75 (131)
T ss_dssp             CCCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCG-----CTTTGGGTTTTSCBSSE-EETTTTEEETHHHHHHHHHHTTTE
T ss_pred             CccEEEeCccccccccccccccccHHHHhcccc-----CcchhhhhccCcceeee-eccccCcCCcchhchhhhcccCCC
Confidence            356788999865 48999999999999998753     46788888865544331 111111110         1  235


Q ss_pred             EEE-ecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecc
Q 025777          133 III-AGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSE  186 (248)
Q Consensus       133 IIV-aG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~  186 (248)
                      ||| +|+|||||||||||+||++++||+||||+||+|||++||+|+| ||||+++
T Consensus        76 ilv~~g~nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~G-llpl~~~  129 (131)
T PF00694_consen   76 ILVVGGENFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNG-LLPLEFP  129 (131)
T ss_dssp             EEEEE-SSBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT--EEEEES
T ss_pred             EEEECCCcccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCC-ceEEEec
Confidence            554 5699999999999999999999999999999999999999999 7999865

; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....

>PLN00094 aconitate hydratase 2; Provisional

Probab=99.97  E-value=2.9e-30  Score=261.08  Aligned_cols=171  Identities=22%  Similarity=0.265  Sum_probs=135.4

Q ss_pred             CCCCceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCc-ccceeEEEecCccCC
Q 025777           64 KEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENET-KTKYKIIIAGGNFGC  142 (248)
Q Consensus        64 ~~~~~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~-~~~~~IIVaG~NFG~  142 (248)
                      +..+++++-.||++..++|||.++|+...++++..|-....|-+.-+.++.+...  ..  .+. .+++.|+|+|+||||
T Consensus       229 ~~~~~~i~~~vfkv~ge~ntddlspa~~a~sr~diplha~~m~~~~~~~~~~~~~--~i--~~lk~~g~~iivvG~nfG~  304 (938)
T PLN00094        229 PPVPEKITVTVFKVTGETNTDDLSPAQDAWSRPDIPLHALAMLKNPREGIQGPIA--QI--EELKKKGHPLAYVGDVVGT  304 (938)
T ss_pred             CCCcceeEEEEEEecCcCccccCCCcccccCCCCchhHHHHHhcCCCCCcccHHH--HH--HHHHHcCCceEEECCceec
Confidence            3456788999999999999999999999888864442222222221211111110  00  011 124589999999999


Q ss_pred             CCCcCcHhhhH-------------HhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEE
Q 025777          143 GSSREHAPVAL-------------GAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLI  209 (248)
Q Consensus       143 GSSREhAa~al-------------~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~  209 (248)
                      |||||||+.++             +.+|+.+ ||+|||||||||++|.| ++|++.+   .+.+++||+|+||+.+|+|+
T Consensus       305 GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G-~~~Ie~~---v~~i~~GD~I~id~~~G~I~  379 (938)
T PLN00094        305 GSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSG-ALPIEMD---VKNLNMGDVIDIYPYEGVVK  379 (938)
T ss_pred             CCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcC-CceEecc---HhhcCCCCEEEEEcCCCEEE
Confidence            99999999999             9999999 99999999999999999 5677654   67799999999999999999


Q ss_pred             eCCCCeEE-EEeeCCC-hHHHHHhCCHHHHHHHhCC
Q 025777          210 NHTTGKEY-KLKPIGD-LGPVIDAGGIFAYARKTGM  243 (248)
Q Consensus       210 ~~~~G~~~-~~~~~~~-~~~ii~aGGll~y~kk~g~  243 (248)
                      ++++|+++ .+++.++ .+++++|||++||++.+|+
T Consensus       380 n~~~g~~~~~f~~~p~~l~d~vrAGGli~~i~gr~l  415 (938)
T PLN00094        380 RHGTDEVITTFSLKTPVLLDEVRAGGRIPLIIGRGL  415 (938)
T ss_pred             ecCCCeEEEeccCCChHHHHHHHcCCcHhhhhcccc
Confidence            98889999 8999988 6899999999999998765

>PRK14812 hypothetical protein; Provisional

Probab=99.94  E-value=5.4e-27  Score=190.07  Aligned_cols=88  Identities=26%  Similarity=0.439  Sum_probs=75.3

Q ss_pred             CCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhh---hcCCCCEEEEEccCcEEEeCCCCeEEE
Q 025777          142 CGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE---ECSTGDVVTIEIAESRLINHTTGKEYK  218 (248)
Q Consensus       142 ~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~---~~~~Gd~I~IDL~~~~v~~~~~G~~~~  218 (248)
                      ||||||||+|||+.+||+||||+||++||++||+|+| +||++.+++..+   .+++|++|+|||++++|++.  +++|+
T Consensus         2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnG-llpi~~~~~~~~~l~~~~~g~~i~vDL~~~~v~~~--~~~~~   78 (119)
T PRK14812          2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNG-MLPIVQPREVREKLAQLKPTDQVTVDLEQQKIISP--VEEFT   78 (119)
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCC-CCcccCCHHHHHHHhccCCCCEEEEEcCCCEEEcC--CeEEE
Confidence            9999999999999999999999999999999999999 678887766655   45799999999999999874  47899


Q ss_pred             EeeCCChHHHHHhC
Q 025777          219 LKPIGDLGPVIDAG  232 (248)
Q Consensus       219 ~~~~~~~~~ii~aG  232 (248)
                      |++.+..+..+-+|
T Consensus        79 f~i~~~~~~~Ll~G   92 (119)
T PRK14812         79 FEIDSEWKHKLLNS   92 (119)
T ss_pred             EEECHHHHHHHHhC
Confidence            98876544444444

>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]

Probab=99.90  E-value=5.7e-24  Score=207.99  Aligned_cols=175  Identities=22%  Similarity=0.314  Sum_probs=126.1

Q ss_pred             CCCCCCceEEeE------E-EecCCCCCcccccccc-ccccCCCC------c----hhhHHHhhhhhcCC-CCCcccc--
Q 025777           62 ATKEPTATFHGL------C-YVVGDNIDTDQIIPAE-YLTLVPSN------P----DEYEKLGSYALIGL-PATYTTR--  120 (248)
Q Consensus        62 ~~~~~~~~i~G~------v-~~lgDnIdTD~IiPa~-~l~~~~~~------p----~d~~~l~~~a~~~l-~~~f~~r--  120 (248)
                      .-++++..|.|.      | .++...+|||||+-++ ||+.+++-      -    -..|....++++.+ +.+|...  
T Consensus       563 qlLepF~~w~gkd~edl~ilikv~gkCttDhIsaaGpwlkY~Ghl~nisnn~~igain~En~e~n~~~n~~~ge~~~vp~  642 (778)
T KOG0453|consen  563 QLLEPFDKWDGKDLEDLKILIKVKGKCTTDHISAAGPWLKYRGHLENISNNDLIGAINKENGEANCVKNYLTGEFGTVPD  642 (778)
T ss_pred             hhcCCCCcccccccccceEEEEEecccCccccccCCcceeccchhhhcccchhhhhcchhhhhhhhhhhccccccCCcCc
Confidence            456788888886      3 6788999999999998 77765510      0    01223333444332 4444211  


Q ss_pred             ----ccccCCcccceeEEEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeec-chhhhhhcCC
Q 025777          121 ----FIDENETKTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDS-EARLCEECST  195 (248)
Q Consensus       121 ----~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~-~~~~~~~~~~  195 (248)
                          +...|    .-+|+|+++|||.|||||||+..++.+|+++||.+||+|||.+|++|+| +|||++ ++++|+++++
T Consensus       643 ~~~~yk~~g----~~wvvv~~~NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkkqg-lLpLtfanpadydKi~~  717 (778)
T KOG0453|consen  643 TARDYKKHG----IRWVVVGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQG-LLPLTFANPADYDKIRP  717 (778)
T ss_pred             hhhhHHhcC----ceeEEEcccccCCCcchhhhhhchhhcCCcEEEeehhHHHHHhhhhhcc-eeeeeccCHHHhhhcCh
Confidence                11111    1179999999999999999999999999999999999999999999999 799997 6789999999


Q ss_pred             CCEEEEE-cc---Cc---E-EEeCCCCeEEEE--eeCCC--hHHHHHhCCHHHHHHHh
Q 025777          196 GDVVTIE-IA---ES---R-LINHTTGKEYKL--KPIGD--LGPVIDAGGIFAYARKT  241 (248)
Q Consensus       196 Gd~I~ID-L~---~~---~-v~~~~~G~~~~~--~~~~~--~~~ii~aGGll~y~kk~  241 (248)
                      .|.+++. |.   .+   + ++...+|+++..  .+...  +.+++++|.-+|+++..
T Consensus       718 ~d~~~~~~L~~~~~gkp~t~~vt~~dg~~~~~kl~ht~n~~Qi~~fkaGsaln~~~e~  775 (778)
T KOG0453|consen  718 ADKVSIKGLTRRTPGKPLTVVVTKKDGKEVEIKLNHTGNKLQIEWFKAGSALNVMKEL  775 (778)
T ss_pred             hcccchhhhhhhcCCCceeEEEECCCCcEEEEecccccchhhhHhhhcchHHHHHHHh
Confidence            9998883 32   22   2 233446776554  44443  56899999999998763

>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4

Probab=99.66  E-value=1.1e-16  Score=138.70  Aligned_cols=159  Identities=23%  Similarity=0.264  Sum_probs=101.2

Q ss_pred             EEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHhhh
Q 025777           73 LCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVA  152 (248)
Q Consensus        73 ~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa~a  152 (248)
                      .||++.+++|||+++||...++|+    |..--+...+..-.++. ....+.= ..+++.++..|+--|.||||..|...
T Consensus         2 ~vfkV~GEtnTDdLSPa~dA~SRp----DiPLHA~aMl~~~~~~~-l~~i~~l-k~kg~~la~vGdvvGtGSSRKSa~NS   75 (204)
T PF06434_consen    2 TVFKVPGETNTDDLSPAPDAWSRP----DIPLHALAMLKNRRPGP-LEQIEEL-KEKGHPLAYVGDVVGTGSSRKSATNS   75 (204)
T ss_dssp             EEEEEEEEEEHHHHS-GGGGGGTT----SHHHHHCCTT-S-BTTS-HHHHHHH-HTTSS-EEEEEEEEEES---THHHHH
T ss_pred             eEEEeCCccccCcCCccccccCCC----CchHHHHHhcccccccH-HHHHHHH-HHcCCcEEEecCccccCcccchhhhh
Confidence            468899999999999999988875    44433333333222221 0000000 01245788889999999999999998


Q ss_pred             HHhcC------------ccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeE-EEE
Q 025777          153 LGAAG------------CSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKE-YKL  219 (248)
Q Consensus       153 l~~lG------------I~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~-~~~  219 (248)
                      +....            ...|++..+|+|||+-+-..| .||++.+   ...++.||+|+|+..++++++. +|+. .+|
T Consensus        76 vlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsG-aLPIe~d---v~~l~~Gdvi~I~p~~gki~~~-~gev~~~f  150 (204)
T PF06434_consen   76 VLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSG-ALPIECD---VSSLNTGDVITIYPYEGKIYKE-NGEVISTF  150 (204)
T ss_dssp             HHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT--EEEE------TT--TT-EEEEETTTTEEEET-T--EEEE-
T ss_pred             hhhhccCCCCCCCccCccCeEECCEEcceEeccccccC-CceEEEe---ccccCCCcEEEEecCCcEEECC-CCCEEEEe
Confidence            86542            257899999999999999999 7999875   5678999999999999999985 4554 446


Q ss_pred             eeCCC-hHHHHHhCCHHHHHHHhC
Q 025777          220 KPIGD-LGPVIDAGGIFAYARKTG  242 (248)
Q Consensus       220 ~~~~~-~~~ii~aGGll~y~kk~g  242 (248)
                      +..++ .++-+||||.++++-.++
T Consensus       151 ~l~p~~l~DevrAGGri~LiiGR~  174 (204)
T PF06434_consen  151 ELKPQTLLDEVRAGGRIPLIIGRG  174 (204)
T ss_dssp             --S-TCHHHHHHHTSHHHHHHHHH
T ss_pred             ecCchhHHHHHhcCCcEEEEechH
Confidence            66666 569999999999986553

2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.

>COG1049 AcnB Aconitase B [Energy production and conversion]

Probab=99.20  E-value=2.2e-11  Score=120.46  Aligned_cols=169  Identities=23%  Similarity=0.256  Sum_probs=122.7

Q ss_pred             CCCCceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccc-cCCc-ccceeEEEecCccC
Q 025777           64 KEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFID-ENET-KTKYKIIIAGGNFG  141 (248)
Q Consensus        64 ~~~~~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~-~G~~-~~~~~IIVaG~NFG  141 (248)
                      ++.+..++-.||++..+++||.++|+.-.++++..|       -|++.++.+.-+...++ -.+. .++..++..|.-.|
T Consensus       160 p~v~e~i~vtvFkv~getnTDdLSPa~dA~sRpDip-------LHalaMlk~~~~gg~i~~i~~lk~Kg~~vayvgdvvG  232 (852)
T COG1049         160 PALPEKITVTVFKVAGETNTDDLSPAPDAWSRPDIP-------LHALAMLKNAREGGPIKQIEALKQKGHPVAYVGDVVG  232 (852)
T ss_pred             cccCceeEEEEEEecCccccccCCCCcccccCCCcc-------hHHHhhccccccCChHHHHHHHhhcCceEEEeccccc
Confidence            345678888899998899999999999888775333       23333343322110000 0001 12347888899999


Q ss_pred             CCCCcCcHhhhHHhc------------CccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEE
Q 025777          142 CGSSREHAPVALGAA------------GCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLI  209 (248)
Q Consensus       142 ~GSSREhAa~al~~l------------GI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~  209 (248)
                      .||||..|.......            ....|+..-.++|||+.+-..| -||++.+   ...++.||+|+|+--+++++
T Consensus       233 tGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~G-alPI~~d---v~~l~~Gdvi~i~py~gki~  308 (852)
T COG1049         233 TGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAG-ALPIEVD---VSNLEMGDVIDIYPYEGKIR  308 (852)
T ss_pred             cCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcC-CCceEee---eccccccceEEeeccCCeee
Confidence            999999998744322            2246777889999999999999 7999875   55789999999999999999


Q ss_pred             eCCCCeEEE-EeeCCC-hHHHHHhCCHHHHHHHhCC
Q 025777          210 NHTTGKEYK-LKPIGD-LGPVIDAGGIFAYARKTGM  243 (248)
Q Consensus       210 ~~~~G~~~~-~~~~~~-~~~ii~aGGll~y~kk~g~  243 (248)
                      ++++|+++. |...++ .++-+||||.++.+-.+|+
T Consensus       309 ~~~~ge~v~~f~lkt~~lldevrAGgripliiGrgL  344 (852)
T COG1049         309 NNNTGEVVATFSLKTDVLLDEVRAGGRIPLIIGRGL  344 (852)
T ss_pred             ccCCCcEEEEeecCchhHHHHHhcCCceeEEEcccc
Confidence            988787655 555555 5899999999998766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
3vba_A	176	Crystal Structure Of Methanogen 3-Isopropylmalate I		3e-23
2pkp_A	170	Crystal Structure Of 3-Isopropylmalate Dehydratase		8e-21
2hcu_A	213	Crystal Structure Of Smu.1381 (Or Leud) From Strept		1e-14
1v7l_A	163	Structure Of 3-Isopropylmalate Isomerase Small Subu		2e-14
3q3w_A	203	Isopropylmalate Isomerase Small Subunit From Campyl		1e-11
3h5e_A	159	Leud_1-156 Small Subunit Of Isopropylmalate Isomera		1e-06
3h5j_A	171	Leud_1-168 Small Subunit Of Isopropylmalate Isomera		1e-06
3h5h_A	189	Leud_1-186 Small Subunit Of Isopropylmalate Isomera		1e-06
3snp_A	908	Crystal Structure Analysis Of Iron Regulatory Prote		3e-04
2b3x_A	888	Structure Of An Orthorhombic Crystal Form Of Human		4e-04

>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate Isomerase Small Subunit Length = 176

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 15/174 (8%)
Query: 68  ATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENET 127
           +   G  +  G+N+DTD I+PA YL  V + P+E   L  + + G    +  +    +  
Sbjct: 3   SIIKGRVWKFGNNVDTDAILPARYL--VYTKPEE---LAQFVMTGADPDFPKKVKPGD-- 55
Query: 128 KTKYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA 187
                II+ G NFGCGSSREHAP+ L  AG S V+AES+ARIF+RN++  G   PL    
Sbjct: 56  -----IIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVG--LPLIECK 108
Query: 188 RLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARK 240
            + E+ + GD + + +    + N TTG+  K + + + +  +++AGG+  Y +K
Sbjct: 109 GISEKVNEGDELEVNLETGEIKNLTTGEVLKGQKLPEFMMEILEAGGLMPYLKK 162

>pdb|2PKP|A Chain A, Crystal Structure Of 3-Isopropylmalate Dehydratase (Leud) From Methhanocaldococcus Jannaschii Dsm2661 (Mj1271) Length = 170

Iteration: 1
 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 70  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
             G  +  GD++DTD IIP  YL       D YE L S+ + G+   +  +  + +    
Sbjct: 3   IKGRAHKFGDDVDTDAIIPGPYL----RTTDPYE-LASHCMAGIDENFPKKVKEGD---- 53
Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
              +I+AG NFGCGSSRE A +A+   G  AV+A+S+ARIF+RN++  G I P+ +    
Sbjct: 54  ---VIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLI-PIIANT-- 107
Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLK-PIGDLGPVIDAGGIFAYARKTGMIASR 247
            +E   GD+V I++ +  ++     K  K + P G    ++ AGG+  Y +K  +I S+
Sbjct: 108 -DEIKDGDIVEIDLDKEEIVITNKNKTIKCETPKGLEREILAAGGLVNYLKKRKLIQSK 165

>pdb|2HCU|A Chain A, Crystal Structure Of Smu.1381 (Or Leud) From Streptococcus Mutans Length = 213

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 36/170 (21%)
Query: 76  VVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT------ 129
           ++ DNIDTDQI+P ++L L+       +  G Y +      Y  R++D N T+       
Sbjct: 31  LMNDNIDTDQILPKQFLKLIDK-----KGFGKYLM------YEWRYLDNNYTENPDFIFN 79
Query: 130 --KYK---IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATG---EIY 181
             +Y+   I+I G NFG GSSREHA  AL   G   +VA S+  I + N +  G    I 
Sbjct: 80  QPEYREASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNGILPIIQ 139
Query: 182 PLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLGPVIDA 231
           P +   +L +   T D VT+ + E ++ +          P+GD    ID 
Sbjct: 140 PKEVRDKLAKLKPT-DEVTVNLFEQKIYS----------PVGDFSFDIDG 178

>pdb|1V7L|A Chain A, Structure Of 3-Isopropylmalate Isomerase Small Subunit From Pyrococcus Horikoshii Length = 163

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 87/184 (47%), Gaps = 33/184 (17%)
Query: 72  GLCYVVGDNIDTDQIIPAEY-LTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTK 130
           G  +  GD+I TD+I P  Y LT    +P E  K+   A I +   +             
Sbjct: 5   GKVWKFGDDISTDEITPGRYNLT---KDPKELAKI---AFIEVRPDFA-------RNVRP 51
Query: 131 YKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLC 190
             +++AG NFG GSSRE A +AL A G + V+AES+ RIF+RN++  G    L       
Sbjct: 52  GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----T 107
Query: 191 EECSTGDVVTIEIAESRLINHTTGKEYK------LKPIGD-LGPVIDAGGIFAYARKTGM 243
           E    GD+VT        +N  TG+  K       +P+ D L  ++  GGI  Y R+ G 
Sbjct: 108 EGLKDGDLVT--------VNWETGEVRKGDEILMFEPLEDFLLEIVREGGILEYIRRRGD 159
Query: 244 IASR 247
           +  R
Sbjct: 160 LCIR 163

>pdb|3Q3W|A Chain A, Isopropylmalate Isomerase Small Subunit From Campylobacter Jejuni. Length = 203

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 23/111 (20%)
Query: 80  NIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENET---------KTK 130
           NIDTDQIIP ++L  V                G    +  R++D+ E+         K +
Sbjct: 21  NIDTDQIIPKQFLLAVSKQG-----------FGKHLFHDLRYLDDKESVLNXDFNLNKKE 69
Query: 131 YK---IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATG 178
           Y+   I+++  NFG GSSREHAP AL   G  A++A S+A IF  N++  G
Sbjct: 70  YQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNG 120

>pdb|3H5E|A Chain A, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase (rv2987c) From Mycobacterium Tuberculosis Length = 159

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 80  NIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTR--FIDENETKTKYKIIIAG 137
           N+DTDQIIPA +L  V     E          GL A + +   F+       +  +++AG
Sbjct: 21  NVDTDQIIPAVFLKRVTRTGFED---------GLFAGWRSDPAFVLNLSPFDRGSVLVAG 71
Query: 138 GNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGD 197
            +FG GSSREHA  AL   G   V++  +  IF  N+   G          L  E +  D
Sbjct: 72  PDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAG---------LLAAEVAQDD 122
Query: 198 VVTIEIAESRLINHTTGKE 216
           V  +     +LI  + G E
Sbjct: 123 VEILW----KLIEQSPGLE 137

>pdb|3H5J|A Chain A, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase (Rv2987c) From Mycobacterium Tuberculosis Length = 171

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 80  NIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTR--FIDENETKTKYKIIIAG 137
           N+DTDQIIPA +L  V     E          GL A + +   F+       +  +++AG
Sbjct: 21  NVDTDQIIPAVFLKRVTRTGFED---------GLFAGWRSDPAFVLNLSPFDRGSVLVAG 71
Query: 138 GNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGD 197
            +FG GSSREHA  AL   G   V++  +  IF  N+   G          L  E +  D
Sbjct: 72  PDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAG---------LLAAEVAQDD 122
Query: 198 VVTIEIAESRLINHTTGKE 216
           V  +     +LI  + G E
Sbjct: 123 VELL----WKLIEQSPGLE 137

>pdb|3H5H|A Chain A, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase (Rv2987c) From Mycobacterium Tuberculosis Length = 189

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 24/139 (17%)
Query: 80  NIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTR--FIDENETKTKYKIIIAG 137
           N+DTDQIIPA +L  V     E          GL A + +   F+       +  +++AG
Sbjct: 21  NVDTDQIIPAVFLKRVTRTGFED---------GLFAGWRSDPAFVLNLSPFDRGSVLVAG 71
Query: 138 GNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGD 197
            +FG GSSREHA  AL   G   V++  +  IF  N+   G          L  E +  D
Sbjct: 72  PDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAG---------LLAAEVAQDD 122
Query: 198 VVTIEIAESRLINHTTGKE 216
           V  +     +LI  + G E
Sbjct: 123 VELL----WKLIEQSPGLE 137

>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In Complex With Ferritin H Ire Rna Length = 908

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 62/152 (40%), Gaps = 49/152 (32%)
Query: 77  VGDNIDTDQIIPA----------EYLTLVPSNPDEYEKLGS------------YALIGLP 114
           +GD++ TD I PA           YLT     P E+   GS            +A I L 
Sbjct: 690 LGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAIMARGTFANIRL- 748
Query: 115 ATYTTRFIDENETKT----------------KYK------IIIAGGNFGCGSSREHAPVA 152
                RF+++   +T                +Y+      I++AG  +G GSSR+ A   
Sbjct: 749 ---LNRFLNKQAPQTIHLPSGETLDVFDAAERYQQEGHPLIVLAGKEYGSGSSRDWAAKG 805
Query: 153 LGAAGCSAVVAESYARIFFRNSVATGEIYPLD 184
               G  AV+AESY RI   N V  G I PL+
Sbjct: 806 PFLLGIKAVLAESYERIHRSNLVGMGVI-PLE 836

>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human Cytosolic Aconitase (Irp1) Length = 888

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 41/148 (27%)
Query: 77  VGDNIDTDQIIPA----------EYLTLVPSNPDEYEKLGS------------YALIGL- 113
           +GD++ TD I PA           YLT     P E+   GS            +A I L 
Sbjct: 670 LGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLL 729
Query: 114 --------PATY---TTRFIDENETKTKYK------IIIAGGNFGCGSSREHAPVALGAA 156
                   P T    +   +D  +   +Y+      I++AG  +G GSSR+ A       
Sbjct: 730 NRFLNKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLL 789
Query: 157 GCSAVVAESYARIFFRNSVATGEIYPLD 184
           G  AV+AESY RI   N V  G I PL+
Sbjct: 790 GIKAVLAESYERIHRSNLVGMGVI-PLE 816

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
2pkp_A	170	Homoaconitase small subunit; beta barrel, amino-ac	2e-59
1v7l_A	163	3-isopropylmalate dehydratase small subunit; beta	5e-57
2hcu_A	213	3-isopropylmalate dehydratase small subunit; beta	3e-23
3h5j_A	171	3-isopropylmalate dehydratase small subunit; leuci	1e-22
3q3w_A	203	3-isopropylmalate dehydratase small subunit; struc	2e-22
1c96_A	753	Mitochondrial aconitase; lyase, tricarboxylic acid	7e-12
2b3y_A	888	Iron-responsive element binding protein 1; IRP1 IR	4e-07
1l5j_A	865	Aconitate hydratase 2; molecular recognition, RNA	6e-05

>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii} Length = 170

 Score =  184 bits (469), Expect = 2e-59
 Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 17/180 (9%)

Query: 70  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
             G  +  GD++DTD IIP  YL    ++P E   L S+ + G+   +  +         
Sbjct: 3   IKGRAHKFGDDVDTDAIIPGPYLRT--TDPYE---LASHCMAGIDENFPKKV-------K 50

Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
           +  +I+AG NFGCGSSRE A +A+   G  AV+A+S+ARIF+RN++  G + P+ +    
Sbjct: 51  EGDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVG-LIPIIAN--- 106

Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKTGMIASRN 248
            +E   GD+V I++ +  ++     K  K +        ++ AGG+  Y +K  +I S+ 
Sbjct: 107 TDEIKDGDIVEIDLDKEEIVITNKNKTIKCETPKGLEREILAAGGLVNYLKKRKLIQSKK 166

>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1 Length = 163

 Score =  178 bits (453), Expect = 5e-57
 Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 19/179 (10%)

Query: 70  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
             G  +  GD+I TD+I P  Y   +  +P E   L   A I +   +            
Sbjct: 3   TTGKVWKFGDDISTDEITPGRYN--LTKDPKE---LAKIAFIEVRPDFARNV-------R 50

Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
              +++AG NFG GSSRE A +AL A G + V+AES+ RIF+RN++  G I  L  +   
Sbjct: 51  PGDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIG-IPLLLGKT-- 107

Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYARKTGMIASR 247
            E    GD+VT+      +      +    +P+ D L  ++  GGI  Y R+ G +  R
Sbjct: 108 -EGLKDGDLVTVNWETGEVRK--GDEILMFEPLEDFLLEIVREGGILEYIRRRGDLCIR 163

>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans} Length = 213

 Score = 92.7 bits (231), Expect = 3e-23
 Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 22/107 (20%)

Query: 79  DNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENET--------KTK 130
           DNIDTDQI+P ++L L+     + +  G Y +      Y  R++D N T        + +
Sbjct: 34  DNIDTDQILPKQFLKLI-----DKKGFGKYLM------YEWRYLDNNYTENPDFIFNQPE 82

Query: 131 Y---KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNS 174
           Y    I+I G NFG GSSREHA  AL   G   +VA S+  I + N 
Sbjct: 83  YREASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNND 129

>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A Length = 171

 Score = 90.3 bits (225), Expect = 1e-22
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 79  DNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGG 138
            N+DTDQIIPA +L  V                G        F+       +  +++AG 
Sbjct: 20  SNVDTDQIIPAVFLKRV-----TRTGFEDGLFAGW--RSDPAFVLNLSPFDRGSVLVAGP 72

Query: 139 NFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNS 174
           +FG GSSREHA  AL   G   V++  +  IF  N+
Sbjct: 73  DFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNA 108

>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni} Length = 203

 Score = 90.3 bits (225), Expect = 2e-22
 Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 27/110 (24%)

Query: 79  DNIDTDQIIPAEYLTLVPSNPDEYEK--LGSYALIGLPATYTTRFIDENETKTK------ 130
            NIDTDQIIP ++L  V        K   G +        +  R++D+ E+         
Sbjct: 20  ANIDTDQIIPKQFLLAV-------SKQGFGKHLF------HDLRYLDDKESVLNMDFNLN 66

Query: 131 ---Y---KIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNS 174
              Y    I+++  NFG GSSREHAP AL   G  A++A S+A IF  N+
Sbjct: 67  KKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNA 116

>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A Length = 753

 Score = 63.8 bits (156), Expect = 7e-12
 Identities = 43/201 (21%), Positives = 65/201 (32%), Gaps = 44/201 (21%)

Query: 75  YVVGDNIDTDQIIPA-EYLTLVPSNPDEYEKLGSYALIGLPATYT-----TRFIDENETK 128
             V     TD I  A  +L     + D    + +  LIG            R     E  
Sbjct: 558 IKVKGKCTTDHISAAGPWLKF-RGHLD---NISNNLLIGAINIENRKANSVRNAVTQEFG 613

Query: 129 T------KYK------IIIAGGNFGCGSSREHAPVALGA--AGCSAVVAESYARIFFRNS 174
                   YK      ++I   N+G G+SREH+  AL     G  A++ +S+ARI   N 
Sbjct: 614 PVPDTARYYKQHGIRWVVIGDENYGEGASREHS--ALEPRHLGGRAIITKSFARIHETNL 671

Query: 175 VATGEIYPL---DSEARLCEECSTGDVVTIEIAESRL--------INHTTGKEYKLKPIG 223
              G + PL   D       +    D +TI+  +           I H  G +  +    
Sbjct: 672 KKQG-LLPLTFADPADY--NKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNH 728

Query: 224 DLGP----VIDAGGIFAYARK 240
                      AG      ++
Sbjct: 729 TFNETQIEWFRAGSALNRMKE 749

>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Length = 888

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 36/140 (25%), Positives = 50/140 (35%), Gaps = 52/140 (37%)

Query: 76  VVGDNIDTDQIIPA----------EYLTLVPSNPDEYEKLGSYA---------------- 109
            +GD++ TD I PA           YLT   +      +  SY                 
Sbjct: 669 NLGDSVTTDHISPAGNIARNSPAARYLT---NRGLTPREFNSYGSRRGNDAVMARGTFAN 725

Query: 110 ------LIGLPATYTTRFIDENETKT------KYK------IIIAGGNFGCGSSREHAPV 151
                  +   A  T   +   E         +Y+      I++AG  +G GSSR+ A  
Sbjct: 726 IRLLNRFLNKQAPQT-IHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWA-- 782

Query: 152 ALGAA--GCSAVVAESYARI 169
           A G    G  AV+AESY RI
Sbjct: 783 AKGPFLLGIKAVLAESYERI 802

>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Length = 865

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 31/170 (18%)

Query: 75  YVVGDNIDTDQIIPAEYLTLVPSNPD--------EYEKLGSYALIGLPATYTTRFIDENE 126
           + V    +TD + PA       S PD                           + I+  +
Sbjct: 171 FKVTGETNTDDLSPAPDAW---SRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQ 227

Query: 127 TKTKYKIIIAGGNFGCGSSREHAPVALGAAG------------CSAVVAESYARIFFRNS 174
            K  + +   G   G GSSR+ A  ++                    +    A IFF   
Sbjct: 228 QK-GFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTM 286

Query: 175 VATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGK---EYKLKP 221
              G + P++ +       + GDV+ +   +  + NH TG+    ++LK 
Sbjct: 287 EDAGAL-PIEVD---VSNLNMGDVIDVYPYKGEVRNHETGELLATFELKT 332

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
3vba_A	176	Isopropylmalate/citramalate isomerase small subun;	100.0
2pkp_A	170	Homoaconitase small subunit; beta barrel, amino-ac	100.0
1v7l_A	163	3-isopropylmalate dehydratase small subunit; beta	100.0
3q3w_A	203	3-isopropylmalate dehydratase small subunit; struc	100.0
3h5j_A	171	3-isopropylmalate dehydratase small subunit; leuci	100.0
2hcu_A	213	3-isopropylmalate dehydratase small subunit; beta	100.0
1l5j_A	865	Aconitate hydratase 2; molecular recognition, RNA	100.0
2b3y_A	888	Iron-responsive element binding protein 1; IRP1 IR	100.0
1c96_A	753	Mitochondrial aconitase; lyase, tricarboxylic acid	100.0

>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.2e-53  Score=364.84  Aligned_cols=163  Identities=35%  Similarity=0.691  Sum_probs=146.2

Q ss_pred             ceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcC
Q 025777           68 ATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSRE  147 (248)
Q Consensus        68 ~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSRE  147 (248)
                      +.++|+||+++||||||+|+|++||+..     +++++++|+|++++|+|..+ .++|      +|||||+|||||||||
T Consensus         3 ~~i~g~v~~~gdnIdTD~IiPa~~l~~~-----~~~~l~~~~f~~~~p~F~~~-~~~g------~IlVaG~NFG~GSSRE   70 (176)
T 3vba_A            3 SIIKGRVWKFGNNVDTDAILPARYLVYT-----KPEELAQFVMTGADPDFPKK-VKPG------DIIVGGKNFGCGSSRE   70 (176)
T ss_dssp             SEEEEEEEECCSSCBHHHHSCGGGTTCC-----SHHHHGGGTTTTTCTTHHHH-CCTT------CEEEECTTBTBSSCCT
T ss_pred             ceEEEEEEEeCCCcchhhcCcHHHhCcC-----CHHHHHHhhCcCCCccHHHh-cCCC------CEEEeCCCccCCccHH
Confidence            4689999999999999999999998653     57899999999999999544 3455      7999999999999999


Q ss_pred             cHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCC-hH
Q 025777          148 HAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LG  226 (248)
Q Consensus       148 hAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~-~~  226 (248)
                      ||+||++.+|++||||+||||||++||+|+| ++|++.+ ++++.+++||+|+|||++++|++.++|++|.+.+.++ ++
T Consensus        71 hA~~al~~~Gi~aVIA~SFA~If~~N~in~G-l~~i~~~-~~~~~~~~gd~i~idl~~~~v~~~~~g~~~~~~~l~~~~~  148 (176)
T 3vba_A           71 HAPLGLKGAGISCVIAESFARIFYRNAINVG-LPLIECK-GISEKVNEGDELEVNLETGEIKNLTTGEVLKGQKLPEFMM  148 (176)
T ss_dssp             HHHHHHHHTTCCEEEESCBCHHHHHHHHHTT-CCEEECT-THHHHCCTTCEEEEETTTCEEEETTTCCEEECCCCCHHHH
T ss_pred             HHHHHHHHhCCcEEEeccHHHHHHhhHHHcC-CCeEEcc-hHHHhcCCCCEEEEECCCCEEEeCCCCeEEEEecCCHHHH
Confidence            9999999999999999999999999999999 5666654 5678899999999999999999887899999998776 78


Q ss_pred             HHHHhCCHHHHHHHhCCC
Q 025777          227 PVIDAGGIFAYARKTGMI  244 (248)
Q Consensus       227 ~ii~aGGll~y~kk~g~~  244 (248)
                      +++++||++||+|+++..
T Consensus       149 ~ii~aGGli~~~k~~~~~  166 (176)
T 3vba_A          149 EILEAGGLMPYLKKKMAE  166 (176)
T ss_dssp             HHHHHTSHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHhcch
Confidence            999999999999987654

>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=8.4e-53  Score=358.23  Aligned_cols=161  Identities=34%  Similarity=0.652  Sum_probs=144.1

Q ss_pred             ceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcC
Q 025777           68 ATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSRE  147 (248)
Q Consensus        68 ~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSRE  147 (248)
                      +.++|+||+++||||||+|+|++||+..     +++.|++|+|++++|+|..+ .+.|      +|||||+|||||||||
T Consensus         1 ~~~~g~v~~~~dnIdTD~IiPa~~l~~~-----~~~~l~~~~f~~~~p~f~~~-~~~~------~iivaG~nfG~GSSRE   68 (170)
T 2pkp_A            1 MIIKGRAHKFGDDVDTDAIIPGPYLRTT-----DPYELASHCMAGIDENFPKK-VKEG------DVIVAGENFGCGSSRE   68 (170)
T ss_dssp             CEEEEEEEECCSCCBHHHHSCGGGGSCC-----CHHHHHTTTTTTTCTTHHHH-CCTT------CEEEECTTBTBSSCCH
T ss_pred             CeEEEEEEECCCCCChhhcChHHHhCCC-----CHHHHHHHhcccCCCchHHh-CCCC------CEEEecCCCCCCCCHH
Confidence            3579999999999999999999999732     47899999999999999544 3445      7999999999999999


Q ss_pred             cHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCC-hH
Q 025777          148 HAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LG  226 (248)
Q Consensus       148 hAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~-~~  226 (248)
                      ||+|+++++|++||||+|||||||+||+|+| +|||+++   ++.+++||+|+||++.++|+++++|++|++.+.++ ++
T Consensus        69 hAa~a~~~~Gi~aVIA~SFarIf~~N~in~G-llpl~~~---~~~l~~gd~i~idl~~~~v~~~~~g~~~~~~~~~~~~~  144 (170)
T 2pkp_A           69 QAVIAIKYCGIKAVIAKSFARIFYRNAINVG-LIPIIAN---TDEIKDGDIVEIDLDKEEIVITNKNKTIKCETPKGLER  144 (170)
T ss_dssp             HHHHHHHTTTCCEEEESCBCHHHHHHHHHHT-CEEEECC---GGGCCTTCEEEEETTTTEEEEGGGTEEEECBCCCHHHH
T ss_pred             HHHHHHHHhCCcEEEEchHHHHHHhhHHHCC-CceEEec---HHHcCCCcEEEEECCCCEEEECCCCeEEEEEeCCHHHH
Confidence            9999999999999999999999999999999 7999886   67889999999999999988766789999976665 68


Q ss_pred             HHHHhCCHHHHHHHhCCC
Q 025777          227 PVIDAGGIFAYARKTGMI  244 (248)
Q Consensus       227 ~ii~aGGll~y~kk~g~~  244 (248)
                      +++++||++||++++.++
T Consensus       145 ~~l~aGGll~~~~~~~~~  162 (170)
T 2pkp_A          145 EILAAGGLVNYLKKRKLI  162 (170)
T ss_dssp             HHHHTTSHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHh
Confidence            999999999999887654

>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1

Probab=100.00  E-value=1.7e-50  Score=341.93  Aligned_cols=153  Identities=36%  Similarity=0.641  Sum_probs=137.0

Q ss_pred             EeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcCcHh
Q 025777           71 HGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAP  150 (248)
Q Consensus        71 ~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSREhAa  150 (248)
                      +|++|+++||||||+|+|++||+..     +++.+++|+|++.+|+|..+ .++|      +|||||+|||||||||||+
T Consensus         4 ~g~~~~~~dnidTD~IiPa~~l~~~-----~~~~l~~~~f~~~~p~f~~~-~~~g------~iivag~nfG~GSSREhAa   71 (163)
T 1v7l_A            4 TGKVWKFGDDISTDEITPGRYNLTK-----DPKELAKIAFIEVRPDFARN-VRPG------DVVVAGKNFGIGSSRESAA   71 (163)
T ss_dssp             EEEEEECCSCCBHHHHSCTTSCCCS-----CHHHHHHHTTTTTCTTHHHH-CCTT------CEEECCSSBTBSCCCTHHH
T ss_pred             EEEEEEcCCCCChhccchHHHhCCC-----CHHHHHHHhCCccCcchHHh-CCCC------CEEEecCcCCCCCCHHHHH
Confidence            6999999999999999999999832     47899999999999999544 4555      7999999999999999999


Q ss_pred             hhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeE-EEEeeCCC-hHHH
Q 025777          151 VALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKE-YKLKPIGD-LGPV  228 (248)
Q Consensus       151 ~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~-~~~~~~~~-~~~i  228 (248)
                      |+++.+||+||||+||||||++||+|+| +|||+++   ++.+++||+|+||++.++|+   +|++ |++.+.++ ++++
T Consensus        72 ~a~~~~Gi~aVIA~SFarIf~~N~in~G-llpl~~~---~~~l~~gd~i~idl~~~~v~---~g~~~~~~~~~~~~~~~~  144 (163)
T 1v7l_A           72 LALKALGIAGVIAESFGRIFYRNAINIG-IPLLLGK---TEGLKDGDLVTVNWETGEVR---KGDEILMFEPLEDFLLEI  144 (163)
T ss_dssp             HHHHHHTCCEEEESCBCHHHHHHHHHHT-CCEEESC---CTTCCTTCEEEEETTTTEEE---ETTEEEECEECCHHHHHH
T ss_pred             HHHHHhCCCEEEEchHHHHHHhhHHHCC-CceEEec---HHHcCCCcEEEEEccCCEEE---CCcEEEEEEcCCHHHHHH
Confidence            9999999999999999999999999999 7999876   67889999999999999875   4666 88877766 6899


Q ss_pred             HHhCCHHHHHHHhC
Q 025777          229 IDAGGIFAYARKTG  242 (248)
Q Consensus       229 i~aGGll~y~kk~g  242 (248)
                      +++||++||++++.
T Consensus       145 l~aGGll~~~~~~~  158 (163)
T 1v7l_A          145 VREGGILEYIRRRG  158 (163)
T ss_dssp             HHTTSHHHHHHHSC
T ss_pred             HHcCCHHHHHHHHH
Confidence            99999999998853

>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}

Probab=100.00  E-value=1.6e-47  Score=333.09  Aligned_cols=155  Identities=29%  Similarity=0.436  Sum_probs=129.5

Q ss_pred             CCCceEEeEEEecC-CCCCccccccccccccCCCCchhhHHHhhhhhcCC----------CCCccccccccCCcccceeE
Q 025777           65 EPTATFHGLCYVVG-DNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGL----------PATYTTRFIDENETKTKYKI  133 (248)
Q Consensus        65 ~~~~~i~G~v~~lg-DnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l----------~~~f~~r~~~~G~~~~~~~I  133 (248)
                      +++++++|++++++ ||||||+|||++||+..     ++++|++|+|+.+          +|+|.    .+...+++++|
T Consensus         5 ~~f~~~~G~a~~l~~dnIDTD~IIP~~fL~~~-----~~~~lg~~~f~~~R~~~~g~~~~~pdF~----~n~~~~~~~~I   75 (203)
T 3q3w_A            5 QKFIIHKGIACPLEYANIDTDQIIPKQFLLAV-----SKQGFGKHLFHDLRYLDDKESVLNMDFN----LNKKEYQNSSI   75 (203)
T ss_dssp             CCCSEEEEEEEEECCSSCBHHHHSCGGGCBSS-----CSSCSGGGTTHHHHBSSSSSCSBCTTSG----GGSGGGTTEEE
T ss_pred             CCcEEEEEEEEECCCcccChhhcchHHHcCcC-----CHHHHHHhhhhhhhccccCCCCCCCChh----hcccccCCCCE
Confidence            67899999999995 99999999999999864     3578999999865          35552    22223445699


Q ss_pred             EEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhc------CCCCEEEEEccCcE
Q 025777          134 IIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEEC------STGDVVTIEIAESR  207 (248)
Q Consensus       134 IVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~------~~Gd~I~IDL~~~~  207 (248)
                      ||||+|||||||||||+|||+++||+||||+||||||||||+|+| +||++.+++..+.+      ++|++|+|||++++
T Consensus        76 lVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~G-ll~i~~~~~~~~~l~~~~~~~~g~~i~VDL~~~~  154 (203)
T 3q3w_A           76 LVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNG-LLTIELAKDEVLEIVDELKKSQDKNIEISLLEKR  154 (203)
T ss_dssp             EEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTT-CEEEECCHHHHHHHHHHHHHCSCCEEEEETTTTE
T ss_pred             EEeCCCCCCCCcHHHHHHHHHHcCceEEEECcHHHHHHHHHHhCC-CCeEEeCHHHHHHHHHHhhcCCCCEEEEECCCCE
Confidence            999999999999999999999999999999999999999999999 78888765444443      79999999999999


Q ss_pred             EEeCCCCeEEEEeeCCC-hHHHHHhC
Q 025777          208 LINHTTGKEYKLKPIGD-LGPVIDAG  232 (248)
Q Consensus       208 v~~~~~G~~~~~~~~~~-~~~ii~aG  232 (248)
                      |+.  +|++|+|+ +++ .++++.+|
T Consensus       155 i~~--~g~~~~f~-i~~~~r~~Ll~G  177 (203)
T 3q3w_A          155 VFF--KDKIFSFD-LDDFHRICLLEG  177 (203)
T ss_dssp             EEE--TTEEEECC-CCHHHHHHHHHT
T ss_pred             EEE--CCEEEEEE-eCHHHHHHHHcC
Confidence            985  58899988 443 56777776

>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A

Probab=100.00  E-value=7.4e-47  Score=321.27  Aligned_cols=156  Identities=26%  Similarity=0.326  Sum_probs=130.7

Q ss_pred             CCCceEEeEEEec-CCCCCccccccccccccCCCCchhhHHHhhhhhcCC--CCCccccccccCCcccceeEEEecCccC
Q 025777           65 EPTATFHGLCYVV-GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGL--PATYTTRFIDENETKTKYKIIIAGGNFG  141 (248)
Q Consensus        65 ~~~~~i~G~v~~l-gDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l--~~~f~~r~~~~G~~~~~~~IIVaG~NFG  141 (248)
                      +++++++|+++++ +||||||+|+|++||+..     ++++|++|+|+.+  +|+|..+.    +..++++|||||+|||
T Consensus         5 ~~f~~~~G~~~~l~~dnIdTD~IiPa~~L~~~-----~~~~l~~~~f~~~R~~p~F~~~~----~~~~~~~IlVaG~NFG   75 (171)
T 3h5j_A            5 EAFHTHSGIGVPLRRSNVDTDQIIPAVFLKRV-----TRTGFEDGLFAGWRSDPAFVLNL----SPFDRGSVLVAGPDFG   75 (171)
T ss_dssp             CCCSEEEEEEEEECCCSCCHHHHSCGGGTTCC-----SCSCCGGGTTTTGGGSTTSGGGS----TTGGGCCEEEECSSBT
T ss_pred             CCcEEEEEEEEEccCCccCcccCCchhhcCCC-----CHHHHHHHhhccCcCCcCccccc----cccCCCcEEEeCCCcc
Confidence            5789999999887 999999999999999864     3578999999987  78884321    1223348999999999


Q ss_pred             CCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhc------CCCCEEEEEccCcEEEeCCCCe
Q 025777          142 CGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEEC------STGDVVTIEIAESRLINHTTGK  215 (248)
Q Consensus       142 ~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~------~~Gd~I~IDL~~~~v~~~~~G~  215 (248)
                      ||||||||+|+++.+||+||||+||+|||++||+|+| +||++.+++.++.+      ++|++|+|||++++|++  .|+
T Consensus        76 cGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~G-llpi~~~~~~~~~l~~~~~~~~g~~i~VDl~~~~i~~--~g~  152 (171)
T 3h5j_A           76 TGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAG-LLAAEVAQDDVELLWKLIEQSPGLEITANLQDRIITA--ATV  152 (171)
T ss_dssp             CSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHT-CEEEECCHHHHHHHHHHHHHSTTCEEEEETTTTEEEE--TTE
T ss_pred             CCcCHHHHHHHHHHhCCcEEEECcHHHHHHhHHHHcC-CceEEeCHHHHHHHHHHhhcCCCcEEEEECCCCEEEE--CCE
Confidence            9999999999999999999999999999999999999 79998876555555      89999999999999987  578


Q ss_pred             EEEEeeCCChHHHHHhC
Q 025777          216 EYKLKPIGDLGPVIDAG  232 (248)
Q Consensus       216 ~~~~~~~~~~~~ii~aG  232 (248)
                      ++.|+..+-.++.+-+|
T Consensus       153 ~~~F~i~~~~k~~ll~G  169 (171)
T 3h5j_A          153 VLPFKIDDHSAWRLLEG  169 (171)
T ss_dssp             EEECBCCHHHHHHHHHT
T ss_pred             EEEEEECHHHHHHHHhC
Confidence            88887544345555554

>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}

Probab=100.00  E-value=7.7e-46  Score=324.99  Aligned_cols=155  Identities=30%  Similarity=0.539  Sum_probs=131.0

Q ss_pred             CCCceEEeEEEec-CCCCCccccccccccccCCCCchhhHHHhhhhhcCCC---------CCccccccccCCcccceeEE
Q 025777           65 EPTATFHGLCYVV-GDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLP---------ATYTTRFIDENETKTKYKII  134 (248)
Q Consensus        65 ~~~~~i~G~v~~l-gDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~---------~~f~~r~~~~G~~~~~~~II  134 (248)
                      ++++.++|+|+++ +||||||||||++||+..     +++.|++|+|++++         |+|..    ....+++++||
T Consensus        19 ~~f~~~~g~v~~l~~dnIdTD~IiPa~~L~~~-----~~~~l~~~~f~~~r~~~~~g~~~p~f~~----~~~~~~~~~Il   89 (213)
T 2hcu_A           19 EEFTIYTGTTVPLMNDNIDTDQILPKQFLKLI-----DKKGFGKYLMYEWRYLDNNYTENPDFIF----NQPEYREASIL   89 (213)
T ss_dssp             CCCSEEEEEEEEECCSCCCHHHHSCGGGGGSC-----TTSCCGGGTTHHHHBSSTTCCBCTTSGG----GSGGGTTCCEE
T ss_pred             CCceEEEEEEEEcCCCCCChhhcchHHHhCcC-----CHHHHHHHHhhcccccccCCCCCCCccc----cchhhcCCcEE
Confidence            5688999999988 699999999999999854     35679999998763         44522    11122345899


Q ss_pred             EecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhc---CCCCEEEEEccCcEEEeC
Q 025777          135 IAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEEC---STGDVVTIEIAESRLINH  211 (248)
Q Consensus       135 VaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~---~~Gd~I~IDL~~~~v~~~  211 (248)
                      |||+|||||||||||+|+++++||+||||+|||||||+||+|+| +|||+++++.++++   ++|++|+|||++++|++ 
T Consensus        90 vaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFArIF~~N~in~G-lLpl~~~~~~~~~l~~~~~G~~i~VDl~~~~I~~-  167 (213)
T 2hcu_A           90 ITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNG-ILPIIQPKEVRDKLAKLKPTDEVTVNLFEQKIYS-  167 (213)
T ss_dssp             EECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCHHHHHHHHTTT-CEEEECCHHHHHHHHTSCTTCEEEEETTTTEEEE-
T ss_pred             EecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHHHHHHHHHHcC-CCcEEeCHHHHHHHhccCCCCEEEEECCCCEEEE-
Confidence            99999999999999999999999999999999999999999999 79999877667777   99999999999999986 


Q ss_pred             CCCeEEEEeeCCC-hHHHHHhC
Q 025777          212 TTGKEYKLKPIGD-LGPVIDAG  232 (248)
Q Consensus       212 ~~G~~~~~~~~~~-~~~ii~aG  232 (248)
                      ++| +++|+ +++ .++++.+|
T Consensus       168 ~~g-~~~f~-i~~~~k~~l~~G  187 (213)
T 2hcu_A          168 PVG-DFSFD-IDGEWKHKLLNG  187 (213)
T ss_dssp             TTE-EEECC-CCHHHHHHHHTT
T ss_pred             CCc-eEEEe-CCHHHHHHHHcC
Confidence            456 88888 554 57888877

>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1

Probab=100.00  E-value=5.7e-42  Score=347.07  Aligned_cols=169  Identities=21%  Similarity=0.287  Sum_probs=143.4

Q ss_pred             CCCCceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhc----CCCCCccccccccC----Cc-ccceeEE
Q 025777           64 KEPTATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALI----GLPATYTTRFIDEN----ET-KTKYKII  134 (248)
Q Consensus        64 ~~~~~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~----~l~~~f~~r~~~~G----~~-~~~~~II  134 (248)
                      +..+++++|+||+++||||||+|||++||+.+.    |++.+++|+|+    +++|+|... ..+.    +. +++..|+
T Consensus       160 p~~~~~i~g~v~~~~~nIdTD~IiPa~~l~~~~----d~~~~a~~lf~~~r~~~~p~f~~~-~~~~~~i~~~~~~G~~Il  234 (865)
T 1l5j_A          160 PALAEKLTVTVFKVTGETNTDDLSPAPDAWSRP----DIPLHALAMLKNAREGIEPDQPGV-VGPIKQIEALQQKGFPLA  234 (865)
T ss_dssp             CCCCSCEEEEEEEEEEEEEHHHHSCGGGGGGTT----SHHHHGGGTTCSCBTTBCCSBTTT-BCSHHHHHHHHTTSSCEE
T ss_pred             CCCCceEEEEEEecCCCCchhccCchhhhhcCC----CHHHHHHHHhhccccCCCcccccc-ccchhhhhhhhcCCCEEE
Confidence            344568899999999999999999999995442    57899999999    777776422 1110    00 2234699


Q ss_pred             EecCccCCCCCcCcHhhhH-------------HhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEE
Q 025777          135 IAGGNFGCGSSREHAPVAL-------------GAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTI  201 (248)
Q Consensus       135 VaG~NFG~GSSREhAa~al-------------~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~I  201 (248)
                      |+|+|||||||||||+|++             +.+| ++|||+|||||||+||+|+| +||++.+   ++.+++||+|+|
T Consensus       235 vaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~G-llpi~~~---v~~l~~Gd~i~I  309 (865)
T 1l5j_A          235 YVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAG-ALPIEVD---VSNLNMGDVIDV  309 (865)
T ss_dssp             EEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTT-CEEEECC---CTTCCTTCEEEE
T ss_pred             EECCceecCcchHHHHHHHHHHhcCCCcCCchhhcC-CeEEechHHHHHHHHHHHcC-CceEEec---HhhcCCCCEEEE
Confidence            9999999999999999999             9999 99999999999999999999 7888875   677899999999


Q ss_pred             EccCcEEEeCCCCeE-EEEeeCCC-hHHHHHhCCHHHHHHHhC
Q 025777          202 EIAESRLINHTTGKE-YKLKPIGD-LGPVIDAGGIFAYARKTG  242 (248)
Q Consensus       202 DL~~~~v~~~~~G~~-~~~~~~~~-~~~ii~aGGll~y~kk~g  242 (248)
                      |+++++|+++++|++ ++|++.++ .++++++||++||+++++
T Consensus       310 dl~~g~I~~~~~g~~~~~f~~~p~~~~~~v~AGGli~~i~~r~  352 (865)
T 1l5j_A          310 YPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRG  352 (865)
T ss_dssp             ETTTTEEEETTTCCEEEECCCSCTHHHHHHHHTSHHHHHHHHH
T ss_pred             ECCCCEEEEcCCCeEEEEEEeCCHHHHHHHHcCChhhhhhcch
Confidence            999999998777887 99999888 799999999999998764

>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A

Probab=100.00  E-value=5.3e-41  Score=341.34  Aligned_cols=205  Identities=26%  Similarity=0.317  Sum_probs=156.6

Q ss_pred             ccccCCCCCCCccccceeeccCCCC-ccCccCCCCCCc-eEEeEE-EecCCCCCccccccc----------cccccCCCC
Q 025777           32 LKFTTGNGRAAVTFQRAVSVIPKAT-SADSRATKEPTA-TFHGLC-YVVGDNIDTDQIIPA----------EYLTLVPSN   98 (248)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~i~G~v-~~lgDnIdTD~IiPa----------~~l~~~~~~   98 (248)
                      ++.|++..|.|+|.|+|+.   +++ +.++++++.+.. ...+++ .+++||||||||+||          +||+.....
T Consensus       625 ~~~~~~~~~~w~~~St~i~---~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~  701 (888)
T 2b3y_A          625 LATPSDKLFFWNSKSTYIK---SPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLT  701 (888)
T ss_dssp             CCCCCCSSCCCCTTCSSCC---CCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCC
T ss_pred             CCCCCCCccccCCCccccc---CCCCccccccCCCCcccccCcEEEEEecCCccccccccCccccCCCHHHHHHHhcCCC
Confidence            4557778899999999998   544 677777766654 445687 788999999999999          799887787


Q ss_pred             chhhHHHhh----------hhhcCCC---------CCccccccccCCccc------------ceeEEEecCccCCCCCcC
Q 025777           99 PDEYEKLGS----------YALIGLP---------ATYTTRFIDENETKT------------KYKIIIAGGNFGCGSSRE  147 (248)
Q Consensus        99 p~d~~~l~~----------~a~~~l~---------~~f~~r~~~~G~~~~------------~~~IIVaG~NFG~GSSRE  147 (248)
                      |+|++.||+          ++|...+         +++ +++.+.|+..+            ..+|||||+|||||||||
T Consensus       702 ~~~f~syg~rRgn~~vm~rg~F~n~r~~n~l~~~~g~~-t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSRE  780 (888)
T 2b3y_A          702 PREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQAPQ-TIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRD  780 (888)
T ss_dssp             GGGCCCTGGGTTCHHHHHHTTTCCTTCEETTTTEECSE-EEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCT
T ss_pred             hHHhccccccccCHHHHhhhcccccccccccccccCCc-eeecCCCccccchhhHHHHHhcCCceEEECCCCCCCCccHH
Confidence            888776554          3453322         112 33334454321            137999999999999999


Q ss_pred             cHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecch-hhhh--hcCCCCEEEEEccC----c-EEEeC-CCCeEEE
Q 025777          148 HAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEA-RLCE--ECSTGDVVTIEIAE----S-RLINH-TTGKEYK  218 (248)
Q Consensus       148 hAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~-~~~~--~~~~Gd~I~IDL~~----~-~v~~~-~~G~~~~  218 (248)
                      ||+|+++++||+||||+||+|||++||+|+| ||||++.. .+++  .+..+|+++|||++    + .+... ++|++|.
T Consensus       781 hAa~a~~~~Gi~aVIA~SFarIf~~Nli~~G-llpl~~~~~~~~~~~~~~~~~~i~i~l~~~~~~g~~v~v~~~~G~~~~  859 (888)
T 2b3y_A          781 WAAKGPFLLGIKAVLAESYERIHRSNLVGMG-VIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQVKLDTGKTFQ  859 (888)
T ss_dssp             HHHHHHHHTTEEEEEESCBCHHHHHHHHHHT-CEEEEECTTCCHHHHTCCSCSCEEECCCSSCCTTCEEEEEETTSCEEE
T ss_pred             HHHHHHHHcCeeEEEEhhHHHHHHhhhhhcC-CceEeecccccHHHhccCCCceEEEEcccccCCCcEEEEEeCCCeEEE
Confidence            9999999999999999999999999999999 79998753 3344  56789999999865    4 33221 5788888


Q ss_pred             EeeC--CC-hHHHHHhCCHHHHHHHh
Q 025777          219 LKPI--GD-LGPVIDAGGIFAYARKT  241 (248)
Q Consensus       219 ~~~~--~~-~~~ii~aGGll~y~kk~  241 (248)
                      +...  ++ +++++++||+|||++++
T Consensus       860 ~~~~~~t~~e~~~~~aGGiL~yv~~~  885 (888)
T 2b3y_A          860 AVMRFDTDVELTYFLNGGILNYMIRK  885 (888)
T ss_dssp             EEECCCSHHHHHHHHHTSHHHHHHHH
T ss_pred             EEecCCCHHHHHHHHcCCHHHHHHHH
Confidence            8643  33 68999999999999874

>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A

Probab=100.00  E-value=6.6e-38  Score=315.04  Aligned_cols=194  Identities=21%  Similarity=0.243  Sum_probs=144.6

Q ss_pred             CCCCCCccccceeeccCCCC-ccCccCCCCCCceEEeEE-EecCCCCCccccccc-cccccCCCCchhhHHHhhhhhcCC
Q 025777           37 GNGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFHGLC-YVVGDNIDTDQIIPA-EYLTLVPSNPDEYEKLGSYALIGL  113 (248)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~G~v-~~lgDnIdTD~IiPa-~~l~~~~~~p~d~~~l~~~a~~~l  113 (248)
                      ...+.|.|.++|..   +.+ +.+.    ........++ .+++||||||||+|+ +||+.++    .++.+.+++|.+.
T Consensus       525 ~~~~~~~p~s~~~~---~~~~f~~~----~~~~~~~~~vL~klgd~iTTDhIsPAG~~L~~rg----~f~ni~~n~l~~~  593 (753)
T 1c96_A          525 GQRVAVSPTSQRLQ---LLEPFDKW----DGKDLEDLQILIKVKGKCTTDHISAAGPWLKFRG----HLDNISNNLLIGA  593 (753)
T ss_dssp             TCCCCCCTTCSSBC---CCCCCCCC----CSSCEEEEEEEEEBCSCCBHHHHBCCGGGGGGTB----CHHHHGGGBTTTS
T ss_pred             cceEeeCCCCcccc---CCCCCCCC----CccccccceEEEeccCCcccccccccchhhcccc----chhhhhhhhcccc
Confidence            34568888888887   332 3321    1112345577 789999999999999 5998875    3678888888654


Q ss_pred             CCCcc-----ccccccCCcc---------c---ceeEEEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhh
Q 025777          114 PATYT-----TRFIDENETK---------T---KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVA  176 (248)
Q Consensus       114 ~~~f~-----~r~~~~G~~~---------~---~~~IIVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in  176 (248)
                      ++.+.     .++.+.|+..         +   ..+|||||+|||||||||||+|+++++||+||||+||+|||++||+|
T Consensus       594 ~~~~~g~~~~~~~~~~~~~~~~~d~a~~y~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~  673 (753)
T 1c96_A          594 INIENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKK  673 (753)
T ss_dssp             BBTTTCCBSCEECTTTCCEECHHHHHHHHHHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHH
T ss_pred             ccccCCCcceeEEecCCcccccHHHHHHHHHhCCCeEEEecCcCCCCcchHHHHhhHHHcCeeEEEehhHHHHHHhhhhh
Confidence            32221     2333344321         0   14899999999999999999999999999999999999999999999


Q ss_pred             cCceeeeecc-hhhhhhcCCCCEEEEE----ccCcE-E---EeCCCCeEEEEe---eCCC-hHHHHHhCCHHHHHHHhC
Q 025777          177 TGEIYPLDSE-ARLCEECSTGDVVTIE----IAESR-L---INHTTGKEYKLK---PIGD-LGPVIDAGGIFAYARKTG  242 (248)
Q Consensus       177 ~GlilPL~~~-~~~~~~~~~Gd~I~ID----L~~~~-v---~~~~~G~~~~~~---~~~~-~~~ii~aGGll~y~kk~g  242 (248)
                      +| +|||++. +..++.++.||+|+||    +..+. +   +++.+|+++.+.   +.++ +++|+++||+|||+|++.
T Consensus       674 ~G-llpl~~~~~~~~~~l~~gd~i~I~gl~~l~~g~~v~~~i~~~~g~~~~~~~~~~~t~~e~~~~~aGGlLnyvk~~~  751 (753)
T 1c96_A          674 QG-LLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRMKELQ  751 (753)
T ss_dssp             TT-CEEEEESSGGGGGGCCTTCEEEEECGGGCCTTCCEEEEEECTTSCEEEEEEECCCCHHHHHHHHHTSHHHHHHHHS
T ss_pred             cC-CcceeecCcchhhhcCCCCEEEEcChHHcCCCceEEEEEEecCCcEEEEEEeCCCCHHHHHHHHcCCHHHHHHHhh
Confidence            99 7999874 4578889999999998    44442 2   345568777665   2333 689999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d1v7la_	162	c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyroc	3e-30
d1acoa1	226	c.8.2.1 (A:529-754) Aconitase A, C-terminal domain	4e-19
d2b3ya1	259	c.8.2.1 (A:631-889) ron-responsive element binding	2e-10

>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus horikoshii [TaxId: 53953]} Length = 162

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: Isopropylmalate isomerase LeuD
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  108 bits (272), Expect = 3e-30
 Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 19/176 (10%)

Query: 70  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT 129
             G  +  GD+I TD+I P  Y   +  +P E   L   A I +         D      
Sbjct: 3   TTGKVWKFGDDISTDEITPGRY--NLTKDPKE---LAKIAFIEVRP-------DFARNVR 50

Query: 130 KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARL 189
              +++AG NFG GSSRE A +AL A G + V+AES+ RIF+RN++  G    L      
Sbjct: 51  PGDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGKT--- 107

Query: 190 CEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGDLG-PVIDAGGIFAYARKTGMI 244
            E    GD+VT+      +      +    +P+ D    ++  GGI  Y R+ G +
Sbjct: 108 -EGLKDGDLVTVNWETGEVRKG--DEILMFEPLEDFLLEIVREGGILEYIRRRGDL 160

>d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 226

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: Aconitase A, C-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.9 bits (199), Expect = 4e-19
 Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 26/191 (13%)

Query: 76  VVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKT------ 129
            V     TD I  A        + D          I           +    +       
Sbjct: 32  KVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINSENRKANSVRNAVTQEFGPVPDT 91

Query: 130 --KYK------IIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIY 181
              YK      ++I   N+G GSSREH+ +     G  A++ +S+ARI   N    G + 
Sbjct: 92  ARYYKQHGIRWVVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLP 151

Query: 182 PLDSEARLCEECSTGDVVTIEIAESRL--------INHTTGKEYKLKPIGDLGPV----I 229
              ++     +    D +TI+  +           I H  G +  +              
Sbjct: 152 LTFADPADYNKIHPVDKLTIQGLKDFAPGKPLTCIIKHPNGTQETILLNHTFNETQIEWF 211

Query: 230 DAGGIFAYARK 240
            AG      ++
Sbjct: 212 RAGSALNRMKE 222

>d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: ron-responsive element binding protein 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 2e-10
 Identities = 44/216 (20%), Positives = 66/216 (30%), Gaps = 51/216 (23%)

Query: 76  VVGDNIDTDQIIPA-------EYLTLVPSNPDEYEKLGSYA------------------- 109
            +GD++ TD I PA            + +      +  SY                    
Sbjct: 40  NLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRL 99

Query: 110 --------------LIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSREHAPVALGA 155
                         L            +  +      I++AG  +G GSSR+ A      
Sbjct: 100 LNRFLNKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFL 159

Query: 156 AGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCE--ECSTGDVVTIEIAESR------ 207
            G  AV+AESY RI   N V  G I          +    +  +  TI I E+       
Sbjct: 160 LGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKV 219

Query: 208 LINHTTGKEYKLKPIGDLGPVID---AGGIFAYARK 240
            +   TGK ++     D    +     GGI  Y  +
Sbjct: 220 QVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIR 255

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1v7la_	162	Isopropylmalate isomerase LeuD {Pyrococcus horikos	100.0
d2b3ya1	259	ron-responsive element binding protein 1, C-termin	100.0
d1acoa1	226	Aconitase A, C-terminal domain {Cow (Bos taurus) [	100.0
d1l5ja2	212	Aconitase B, second N-terminal domain {Escherichia	99.49

>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: Isopropylmalate isomerase LeuD
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=8.4e-54  Score=359.41  Aligned_cols=159  Identities=33%  Similarity=0.583  Sum_probs=141.1

Q ss_pred             ceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCcccceeEEEecCccCCCCCcC
Q 025777           68 ATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENETKTKYKIIIAGGNFGCGSSRE  147 (248)
Q Consensus        68 ~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~~~~~~IIVaG~NFG~GSSRE  147 (248)
                      +.++||||++|||||||||+|++|+...     +++.|++|+|++++|+|..+ +++|      +|||||+|||||||||
T Consensus         1 m~~~Gr~~~~gDnI~TD~I~P~~~~~~~-----~~~~l~~~~f~~~~p~f~~~-~~~g------~IlVaG~nfG~GSSRE   68 (162)
T d1v7la_           1 MITTGKVWKFGDDISTDEITPGRYNLTK-----DPKELAKIAFIEVRPDFARN-VRPG------DVVVAGKNFGIGSSRE   68 (162)
T ss_dssp             CEEEEEEEECCSCCBHHHHSCTTSCCCS-----CHHHHHHHTTTTTCTTHHHH-CCTT------CEEECCSSBTBSCCCT
T ss_pred             CeEEEEEEEcCCCCchhcCcCccccCcC-----CHHHHhhhhHhhcCchhhhh-cccc------cEEEEecccccCCccc
Confidence            4689999999999999999999998754     47889999999999999544 4566      7999999999999999


Q ss_pred             cHhhhHHhcCccEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEccCcEEEeCCCCeEEEEeeCCC-hH
Q 025777          148 HAPVALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LG  226 (248)
Q Consensus       148 hAa~al~~lGI~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~~~~v~~~~~G~~~~~~~~~~-~~  226 (248)
                      ||+|+|+++||+||||+||||||+|||+|+| +++++.+   .+.+++||+|+||++.++|++  .++++.+++.++ ++
T Consensus        69 ~A~~al~~~Gi~aVIA~SFarIf~rN~in~G-lp~i~~~---~~~i~~gd~i~VDl~~~~i~~--~~~~~~~~~l~~~~~  142 (162)
T d1v7la_          69 SAALALKALGIAGVIAESFGRIFYRNAINIG-IPLLLGK---TEGLKDGDLVTVNWETGEVRK--GDEILMFEPLEDFLL  142 (162)
T ss_dssp             HHHHHHHHHTCCEEEESCBCHHHHHHHHHHT-CCEEESC---CTTCCTTCEEEEETTTTEEEE--TTEEEECEECCHHHH
T ss_pred             hhhHHHHhccEeeEeehhhhHHHHhhHHHCC-CCeEecc---hhhCCCCCEEEEECCCCEEEe--CCEEEEeccCCHHHH
Confidence            9999999999999999999999999999999 4444433   456899999999999999987  467888888877 68


Q ss_pred             HHHHhCCHHHHHHHhCCC
Q 025777          227 PVIDAGGIFAYARKTGMI  244 (248)
Q Consensus       227 ~ii~aGGll~y~kk~g~~  244 (248)
                      +++++||+++|++++|-+
T Consensus       143 ~il~aGGl~~y~~~~~d~  160 (162)
T d1v7la_         143 EIVREGGILEYIRRRGDL  160 (162)
T ss_dssp             HHHHTTSHHHHHHHSCCC
T ss_pred             HHHHCCCHHHHHHhhCcc
Confidence            999999999999999876

>d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: ron-responsive element binding protein 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-44  Score=321.49  Aligned_cols=200  Identities=26%  Similarity=0.321  Sum_probs=146.1

Q ss_pred             CCCCCccccceeeccCCCC-ccCccCCCCCCceEEe-EE-EecCCCCCcccccccc----------ccccCCCCchhhHH
Q 025777           38 NGRAAVTFQRAVSVIPKAT-SADSRATKEPTATFHG-LC-YVVGDNIDTDQIIPAE----------YLTLVPSNPDEYEK  104 (248)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~G-~v-~~lgDnIdTD~IiPa~----------~l~~~~~~p~d~~~  104 (248)
                      +.|+|+|.|||+.   +++ +.+.+..+.+...+.+ +| .++||||+||||+||+          ||..+...|.|++.
T Consensus         2 ~~~~w~~~styi~---~pPff~~~~~~~~~~~~i~~arvL~k~gd~iTTDHIsPAG~i~~~~~~~~~L~~~~v~~~d~n~   78 (259)
T d2b3ya1           2 KLFFWNSKSTYIK---SPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNS   78 (259)
T ss_dssp             SSCCCCTTCSSCC---CCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCC
T ss_pred             CCCCCCCCCcccc---CCCCcCCCCCCCCCCCCccCcEEEEEeCCCCChhccCCCCcccccCchHHHHHHcCCchhcchh
Confidence            4689999999999   677 8888888888776655 67 7899999999999997          55566666666666


Q ss_pred             Hhh----------hhhcCCC--CCc------cccccccCCccc------------ceeEEEecCccCCCCCcCcHhhhHH
Q 025777          105 LGS----------YALIGLP--ATY------TTRFIDENETKT------------KYKIIIAGGNFGCGSSREHAPVALG  154 (248)
Q Consensus       105 l~~----------~a~~~l~--~~f------~~r~~~~G~~~~------------~~~IIVaG~NFG~GSSREhAa~al~  154 (248)
                      ++.          .+|...+  ..+      .+++.+.|+..+            ...|||||+||||||||||||++++
T Consensus        79 yg~rr~n~~~m~r~~f~ni~~~n~~~~~~~~~t~~~p~~e~~~i~d~a~~y~~~g~~~iivag~nYG~GSSREhAA~~p~  158 (259)
T d2b3ya1          79 YGSRRGNDAVMARGTFANIRLLNRFLNKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPF  158 (259)
T ss_dssp             TGGGTTCHHHHHHTTTCCTTCEETTTTEECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHH
T ss_pred             hhhhhcchhhhhhhhhcccccccceeeecCCceeecccccccchHHHHHHHHhcCCCeEEEeccccccccccchHHHHHH
Confidence            654          2333221  111      123334444321            1279999999999999999999999


Q ss_pred             hcCccEEEechhhHHHhhchhhcCceeeeecc-hhhhhhcCC-C-CEEEEEcc----C-cEEE-eCCCCeEEEEeeCCC-
Q 025777          155 AAGCSAVVAESYARIFFRNSVATGEIYPLDSE-ARLCEECST-G-DVVTIEIA----E-SRLI-NHTTGKEYKLKPIGD-  224 (248)
Q Consensus       155 ~lGI~aVIAeSFarIf~rN~in~GlilPL~~~-~~~~~~~~~-G-d~I~IDL~----~-~~v~-~~~~G~~~~~~~~~~-  224 (248)
                      ++|++|||||||||||++||+|+| +|||++. +..++.+.. | +.+.+.+.    . ..|. ...+|+++.+...-+ 
T Consensus       159 ~LGv~aVIAkSFaRIHrsNLi~~G-vLPL~F~~~~d~d~l~l~g~e~~~i~~~~~l~~~~~v~v~~~~g~~~~~~~ridT  237 (259)
T d2b3ya1         159 LLGIKAVLAESYERIHRSNLVGMG-VIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQVKLDTGKTFQAVMRFDT  237 (259)
T ss_dssp             HTTEEEEEESCBCHHHHHHHHHHT-CEEEEECTTCCHHHHTCCSCSCEEECCCSSCCTTCEEEEEETTSCEEEEEECCCS
T ss_pred             HhCceEEEEccHHHHHHhhhcccc-eeEEEecCCccccccccccceeeeccccccCCCCeEEEEEeCCCCEEEEEEeCCC
Confidence            999999999999999999999999 8999974 445666643 3 23444221    1 1222 234688887765442 


Q ss_pred             --hHHHHHhCCHHHHHHHh
Q 025777          225 --LGPVIDAGGIFAYARKT  241 (248)
Q Consensus       225 --~~~ii~aGGll~y~kk~  241 (248)
                        +.+++++||+|||++++
T Consensus       238 ~~Eie~~~aGGiLnyVlrk  256 (259)
T d2b3ya1         238 DVELTYFLNGGILNYMIRK  256 (259)
T ss_dssp             HHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHH
Confidence              68999999999998875

>d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: Aconitase A, C-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-41  Score=298.88  Aligned_cols=191  Identities=19%  Similarity=0.193  Sum_probs=135.5

Q ss_pred             CCccccceeeccCCCCccCccCCCCCCceEEeEE-EecCCCCCcccccccc-ccccCCCCchhhHHHhhhhhcCCCCCcc
Q 025777           41 AAVTFQRAVSVIPKATSADSRATKEPTATFHGLC-YVVGDNIDTDQIIPAE-YLTLVPSNPDEYEKLGSYALIGLPATYT  118 (248)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~v-~~lgDnIdTD~IiPa~-~l~~~~~~p~d~~~l~~~a~~~l~~~f~  118 (248)
                      .|+|.|++..  --.+++.-+    .......+| .++|||||||||+||+ |+..++.    .+.++.+.+.+.++.+.
T Consensus         2 ~~~p~s~~~~--~l~pf~~~~----~~~~~~a~~L~~~gd~iTTDhIsPag~~~~~r~~----~~~~~~~~~~~~~~~~~   71 (226)
T d1acoa1           2 DVSPTSQRLQ--LLEPFDKWD----GKDLEDLQILIKVKGKCTTDHISAAGPWLKFRGH----LDNISNNLLIGAINSEN   71 (226)
T ss_dssp             CCCTTCSSBC--CCCCCCCCC----SSCEEEEEEEEEBCSCCBHHHHSCCGGGGGGTBC----HHHHGGGTTTTSBBTTT
T ss_pred             eeCCCcchhh--cCCCCCCCC----CcCccCCeEEEEeCCCcCccccCCCchhhhhcCc----hhhhhhceecccccccc
Confidence            5889998876  122233211    123445677 7899999999999998 6766542    56678888766554432


Q ss_pred             cc-----ccccCCccc------------ceeEEEecCccCCCCCcCcHhhhHHhcCccEEEechhhHHHhhchhhcCcee
Q 025777          119 TR-----FIDENETKT------------KYKIIIAGGNFGCGSSREHAPVALGAAGCSAVVAESYARIFFRNSVATGEIY  181 (248)
Q Consensus       119 ~r-----~~~~G~~~~------------~~~IIVaG~NFG~GSSREhAa~al~~lGI~aVIAeSFarIf~rN~in~Glil  181 (248)
                      .+     +...++..+            ...|||||+||||||||||||++++++||+||||+||+|||++||+|+| +|
T Consensus        72 ~~~~~~~~~~~~~~~~~~d~a~~y~~~~~~~vivaG~nyG~GSSRe~Aa~~~~~lGv~aViA~Sf~rIhrsNli~~G-vl  150 (226)
T d1acoa1          72 RKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQG-LL  150 (226)
T ss_dssp             SCBSCEECTTTCCEECHHHHHHHHHHTTCCEEEECCTTBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTT-CE
T ss_pred             cccceeeccCCCCcCChHHHHHHHHHhCCCeEeeccCccCCCcchhHHHHHHHhcccceeehHHHHHHHHhhHHhcC-ce
Confidence            11     111121111            1269999999999999999999999999999999999999999999999 89


Q ss_pred             eeecch-hhhhhcCCCCEEEEEc-cC----c--E-EEeCCCCeEEEEe--eCC-C-hHHHHHhCCHHHHHHHhC
Q 025777          182 PLDSEA-RLCEECSTGDVVTIEI-AE----S--R-LINHTTGKEYKLK--PIG-D-LGPVIDAGGIFAYARKTG  242 (248)
Q Consensus       182 PL~~~~-~~~~~~~~Gd~I~IDL-~~----~--~-v~~~~~G~~~~~~--~~~-~-~~~ii~aGGll~y~kk~g  242 (248)
                      ||+++. ..++.+...|.++|+. ++    +  + +++..+|+++.+.  ... + +++++++||+|||+|++.
T Consensus       151 pl~f~~~~~~~~l~~~d~~~I~~l~~i~p~~~v~v~I~~~dG~~~~i~l~~~~T~~Eiey~kaGGiLnyvr~~~  224 (226)
T d1acoa1         151 PLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLTCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRMKELQ  224 (226)
T ss_dssp             EEEESSGGGGGGCCTTCEEEEECGGGCCTTCCEEEEEECTTSCEEEEEEECCCCHHHHHHHHHTSHHHHHHHHT
T ss_pred             eeeeccccchhhcccccccccccccccCCCCEEEEEEEeCCCCEEEEEEeccCCHHHHHHHHhCCHHHHHHHHh
Confidence            999743 4566677778888853 21    1  1 2345567665543  222 2 689999999999998864

>d1l5ja2 c.8.2.1 (A:161-372) Aconitase B, second N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: Aconitase B, second N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=9.1e-14  Score=118.53  Aligned_cols=165  Identities=19%  Similarity=0.231  Sum_probs=123.1

Q ss_pred             CceEEeEEEecCCCCCccccccccccccCCCCchhhHHHhhhhhcCCCCCccccccccCCc----------ccceeEEEe
Q 025777           67 TATFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPATYTTRFIDENET----------KTKYKIIIA  136 (248)
Q Consensus        67 ~~~i~G~v~~lgDnIdTD~IiPa~~l~~~~~~p~d~~~l~~~a~~~l~~~f~~r~~~~G~~----------~~~~~IIVa  136 (248)
                      .++++-.++++..+|+||.++|+.-.++|+    |++--|+..+..-+++....  +.+..          .+++.++..
T Consensus         3 ~e~I~vtvfkv~GeinTDdLSPa~dA~SR~----DipLHa~~Ml~~~~~~~~~~--~~~~~~p~~~i~~lk~kG~~l~~v   76 (212)
T d1l5ja2           3 AEKLTVTVFKVTGETNTDDLSPAPDAWSRP----DIPLHALAMLKNAREGIEPD--QPGVVGPIKQIEALQQKGFPLAYV   76 (212)
T ss_dssp             CSCEEEEEEEEEEEEEHHHHSCGGGGGGTT----SHHHHGGGTTCSCBTTBCCS--BTTTBCSHHHHHHHHTTSSCEEEE
T ss_pred             CceEEEEEEEecCccccccCCCcccccCCC----CchhHHHHHHhchhhccccc--ccccCCcHHHHHHHHhcCCceEEe
Confidence            456777789999999999999999998885    55544444333222222111  11111          124578888


Q ss_pred             cCccCCCCCcCcHhhhHHhcCc------------cEEEechhhHHHhhchhhcCceeeeecchhhhhhcCCCCEEEEEcc
Q 025777          137 GGNFGCGSSREHAPVALGAAGC------------SAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIA  204 (248)
Q Consensus       137 G~NFG~GSSREhAa~al~~lGI------------~aVIAeSFarIf~rN~in~GlilPL~~~~~~~~~~~~Gd~I~IDL~  204 (248)
                      |.--|.||||..|+..+...+-            ..|+..-.|+||+.-+--.| -||++.+   ...++.||.|+|+--
T Consensus        77 gdvvGtGSSRkSa~NsvlW~~g~~iPyVPnk~~ggiv~G~~IaPIF~nT~edsG-alpIe~d---v~~l~~Gdvi~i~p~  152 (212)
T d1l5ja2          77 GDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAG-ALPIEVD---VSNLNMGDVIDVYPY  152 (212)
T ss_dssp             EEEEEESCCCTHHHHHHHHHHSEEETTEEEEEECCEEEEEEECHHHHHHHHHTT-CEEEECC---CTTCCTTCEEEEETT
T ss_pred             cceeecCccchhhhhhhhhhcCCCCCCCCcccccCeEEcceecceeeeeeeccC-ceeEEee---ccccccCCccccccc
Confidence            8899999999999988865432            46777789999999999999 7999875   567899999999998


Q ss_pred             CcEEEeCCCCeEEE-EeeCCC-hHHHHHhCCHHHHHHHh
Q 025777          205 ESRLINHTTGKEYK-LKPIGD-LGPVIDAGGIFAYARKT  241 (248)
Q Consensus       205 ~~~v~~~~~G~~~~-~~~~~~-~~~ii~aGGll~y~kk~  241 (248)
                      ++++.++.+|+.+. |...++ .++.+||||.++.+-.+
T Consensus       153 ~g~i~~~~~gevi~~f~l~t~~l~DevRAGGri~LIiGr  191 (212)
T d1l5ja2         153 KGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGR  191 (212)
T ss_dssp             TTEEEETTTCCEEEECCCSCTHHHHHHHHTSHHHHHHHH
T ss_pred             cceEEecCCCcEEEEeecCCcchhhheecCCCeEEEEch
Confidence            89999877888774 666666 57899999999997543