Citrus Sinensis ID: 025796

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MVVAGIFIFAHSMAISSCLCHPLVLPLKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGTELRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKSS
Secondary Structure (PSIPRED)
cEEEEEEHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEccccccccccEEccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEHHHHHccccccccccccccccccccccccccccccccccccccHHcccEEEEEcccccccccEccccEEEEccccEEEEHccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHcccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MVVAGIFIFAHSMAISsclchplvlplkdkpigtwgnvgedqrltsaprsmnaetfgrqITGVGTELRSewsflggsrviirpQVTKFIRHQkgfhihaswlsgpQLVSTVFTlgtagvlpfytlMVFApkaeltkksmessipYVVLGVLYAYLLYLSWTPDTLRLMFASKywlpelpgiAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKSS
Flexible Loop (DISEMBL)
MVVAGIFIFAHSMAISSCLCHPLVLPLKDKPIGTWGNVGEDQRLtsaprsmnaetfgrQITGVGTELRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKSS
Low Complexity Region (SEG)
MVVAGIFIFAHSMAISSCLCHPLVLPLKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGTELRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVFAPKAELTKKSMESSIPyvvlgvlyayllylSWTPDTLRLMFASKYWLPELPGIAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKSS
Disordered region (IsUnstruct)
*VVAGIFIFAHSMAISSCLCHPLVLPLKDKPIGTWGNVG***************TFGRQITGVGTELRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKA*****
Disordered Region (DISOPRED)
*VVAGIFIFAHSMAISSCLCHPLVLPLKDKPIGTWGN****************************ELRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKS*
Disordered Region (DISEMBL)
MVVAGIFIFAHSMAISSCLCHPLVLPLKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGTELRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKSS
Disordered Region (DISPRO)
MVVAGIFIFAHSMAISSCLCHPLVLPLKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGTELRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKSS
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVAGIFIFAHSMAISSCLCHPLVLPLKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGTELRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
296875328	248	neoxanthin synthase [Citrus sinensis]	1.0	1.0	0.979	1e-138
224077174	246	predicted protein [Populus trichocarpa]	0.947	0.955	0.666	8e-89
255560414	246	conserved hypothetical protein [Ricinus	0.947	0.955	0.691	3e-87
225452043	246	PREDICTED: uncharacterized protein LOC10	0.951	0.959	0.682	2e-83
372477763	242	neoxanthin synthase, partial [Malus x do	0.947	0.971	0.626	3e-78
356569064	241	PREDICTED: uncharacterized protein LOC10	0.931	0.958	0.642	7e-78
358345802	239	hypothetical protein MTR_065s0045 [Medic	0.935	0.970	0.635	4e-77
356527490	247	PREDICTED: uncharacterized protein LOC10	0.943	0.947	0.626	2e-76
357497225	240	hypothetical protein MTR_6g025680 [Medic	0.923	0.954	0.575	2e-72
255626963	258	unknown [Glycine max]	0.943	0.906	0.589	2e-72

>gi|296875328|gb|ADH82117.1| neoxanthin synthase [Citrus sinensis]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/248 (97%), Positives = 245/248 (98%)

Query: 1   MVVAGIFIFAHSMAISSCLCHPLVLPLKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQI 60
           MVVAGIFIFAHSMAISSCLCHPLVLPLKDKPIGTWGNVG DQRLTSAPRSMNAETFGRQI
Sbjct: 1   MVVAGIFIFAHSMAISSCLCHPLVLPLKDKPIGTWGNVGVDQRLTSAPRSMNAETFGRQI 60

Query: 61  TGVGTELRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVL 120
           TGVGT+L+SEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVL
Sbjct: 61  TGVGTDLQSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVL 120

Query: 121 PFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPG 180
           PFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPG
Sbjct: 121 PFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPG 180

Query: 181 IAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVI 240
           IAKMFSSEITLASAWIHLLAVDLFAA HVF DGLQNQIETRHSVSLCLLFCPIGILTHVI
Sbjct: 181 IAKMFSSEITLASAWIHLLAVDLFAASHVFQDGLQNQIETRHSVSLCLLFCPIGILTHVI 240

Query: 241 TKALTKSS 248
           TKALTKSS
Sbjct: 241 TKALTKSS 248

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077174|ref|XP_002305164.1| predicted protein [Populus trichocarpa] gi|222848128|gb|EEE85675.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (851), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 160/240 (66%), Positives = 199/240 (82%), Gaps = 5/240 (2%)

Query: 13  MAISSCLCHPLVLPLKDKPIG----TWGNVGEDQRLTSAPRSMNAETFGRQITGVGTELR 68
           MA SSC C+P    LK+   G    +   VG+D++L S+ RS + E FG+++  VG +L 
Sbjct: 1   MAFSSCFCYP-QFSLKNDCSGLTIRSHHIVGKDRKLFSSLRSNSIELFGQRVARVGADLH 59

Query: 69  SEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVF 128
            +W+FLGGSR+I+ P++T F+ ++K   ++ASWL+  Q+ S+VFTLGTA VLPFYTLMV 
Sbjct: 60  RDWNFLGGSRIIVHPKLTNFLVYRKSSGVNASWLTSSQIASSVFTLGTAAVLPFYTLMVV 119

Query: 129 APKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSE 188
           APKAE+T+KSMESSIPY+VLG+LYA+LLYLSWTPDT+RLMFAS+YWLPELPGIAKMFS+E
Sbjct: 120 APKAEVTRKSMESSIPYIVLGLLYAFLLYLSWTPDTMRLMFASQYWLPELPGIAKMFSNE 179

Query: 189 ITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKSS 248
           +TLASAWIHLLAVDLFAAR VF+DGL+N++ETRHSVSLCLLFCPIGI TH ITKALTK S
Sbjct: 180 MTLASAWIHLLAVDLFAARQVFNDGLENEVETRHSVSLCLLFCPIGIATHCITKALTKGS 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560414|ref|XP_002521222.1| conserved hypothetical protein [Ricinus communis] gi|223539587|gb|EEF41174.1| conserved hypothetical protein [Ricinus communis]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 166/240 (69%), Positives = 195/240 (81%), Gaps = 5/240 (2%)

Query: 13  MAISSCLCHPLVLPLK----DKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGTELR 68
           MA SSC C P  + LK     + I     V +D +   + RS + E  GRQ+  +G +L 
Sbjct: 1   MAFSSCFC-PSHIHLKTGYPRRVIRPGRPVEKDGQKFFSLRSNSTELSGRQVAKLGADLL 59

Query: 69  SEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVF 128
           S+WSF+GGSR+ IRP++ + I ++K   +HASWLS  QL ST FTLGTA VLPFYTLMV 
Sbjct: 60  SDWSFIGGSRIAIRPKLARAIVYRKHSGVHASWLSSYQLASTAFTLGTAAVLPFYTLMVV 119

Query: 129 APKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSE 188
           APKAELT+KSMESSIPYVVLGVLYAYLLYLSWTPDT+RLMFAS+YWLPELPGIAKMFSSE
Sbjct: 120 APKAELTRKSMESSIPYVVLGVLYAYLLYLSWTPDTVRLMFASQYWLPELPGIAKMFSSE 179

Query: 189 ITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKSS 248
           +TLASAWIHLLAVDLFAAR VFHDGL+N+IETRHSVSLCLLFCPIGI++HV+TKALT+S+
Sbjct: 180 MTLASAWIHLLAVDLFAARQVFHDGLENEIETRHSVSLCLLFCPIGIVSHVLTKALTRSA 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452043|ref|XP_002283875.1| PREDICTED: uncharacterized protein LOC100246370 [Vitis vinifera] gi|296087274|emb|CBI33648.3| unnamed protein product [Vitis vinifera]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 163/239 (68%), Positives = 194/239 (81%), Gaps = 3/239 (1%)

Query: 13  MAISSCLCHPLVLPLKDK---PIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGTELRS 69
           M  SSC C   +    D+    I    +  +DQR T A + M+ E FG+Q+   G    S
Sbjct: 1   MVFSSCFCQSQISFKIDRSAVAIRPQCHTRKDQRSTFALKGMSTELFGQQVARAGAMRSS 60

Query: 70  EWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVFA 129
           EWSF+ GSR+IIRP+V +F+ ++KG  ++ASWL+ PQ+ S+VFTLGTA VLPFYTLMV A
Sbjct: 61  EWSFMRGSRIIIRPKVARFVFYRKGSGVYASWLANPQIASSVFTLGTAAVLPFYTLMVLA 120

Query: 130 PKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSEI 189
           P AELTKKSMES+IPYVVLG+LYAYLLYLSWTPDT+RLMFASKYWLPELPG+AKMFS+E+
Sbjct: 121 PTAELTKKSMESTIPYVVLGLLYAYLLYLSWTPDTIRLMFASKYWLPELPGMAKMFSNEM 180

Query: 190 TLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKSS 248
           TLASAWIHLLA+DLFAAR VF DGL+N+IETRHSVSLCLLFCPIGI+THVITKALTKS+
Sbjct: 181 TLASAWIHLLAIDLFAARQVFQDGLENKIETRHSVSLCLLFCPIGIVTHVITKALTKSA 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|372477763|gb|AEX97076.1| neoxanthin synthase, partial [Malus x domestica]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 149/238 (62%), Positives = 174/238 (73%), Gaps = 3/238 (1%)

Query: 13  MAISSCLCH-PLVLPLK--DKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGTELRS 69
           MA  SC CH P    +   +K I  W N    Q  T   R  N E  G Q+  V + +  
Sbjct: 1   MAFCSCFCHSPFSFKVDYGNKTIRHWSNDTSAQSFTFTLRGYNTEVLGHQVVTVESHMHK 60

Query: 70  EWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVFA 129
           +WSF+GGS V IRP++ ++I  +K   ++ SWL+  Q+ S VFT+GT  VLPFY LMV A
Sbjct: 61  DWSFVGGSTVPIRPKLERYIPRRKCSGVYMSWLASSQIASRVFTVGTTAVLPFYALMVLA 120

Query: 130 PKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSEI 189
           PKA+LTK   ESSIP V+LGVLYAYLLYLSWTP+TL+L+F SKYWLPEL GIAKMF++EI
Sbjct: 121 PKAQLTKVFTESSIPNVLLGVLYAYLLYLSWTPETLQLIFGSKYWLPELTGIAKMFTNEI 180

Query: 190 TLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKS 247
           TLASAWIHLL VDLFAAR VF DGLQNQIETR SVSLCL FCPIGILTHVITKALTK+
Sbjct: 181 TLASAWIHLLVVDLFAARQVFSDGLQNQIETRQSVSLCLFFCPIGILTHVITKALTKT 238

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569064|ref|XP_003552726.1| PREDICTED: uncharacterized protein LOC100806791 [Glycine max]

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 151/235 (64%), Positives = 175/235 (74%), Gaps = 4/235 (1%)

Query: 13  MAISSCLCHPLVLPLKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGTELRSEWS 72
           M  SSC  H    PL  K +   G+VG+ +      RS  AE     I      L  +WS
Sbjct: 1   MYFSSCFSHS---PLTLKAMKPCGSVGKGKNFAFPIRSNGAELCDGHIVRSRVNLSGDWS 57

Query: 73  FLGGSRVIIRPQVTKFIRHQ-KGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVFAPK 131
           F+GGSR+I++P+ T+ + H  K   + AS   G QL STVFT+GT  VLPFYTLMV APK
Sbjct: 58  FIGGSRIIVKPKATRLLLHYPKRGQMQASCFIGSQLASTVFTVGTIAVLPFYTLMVLAPK 117

Query: 132 AELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSEITL 191
           +ELTKKSMESSIPYVVL +LYAYLLYLSWTP+T+RL+FASKY LPEL GIAKMFSSE+TL
Sbjct: 118 SELTKKSMESSIPYVVLSILYAYLLYLSWTPETVRLIFASKYLLPELAGIAKMFSSEMTL 177

Query: 192 ASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTK 246
           ASAWIHLL VDLFAARH+F DGL+NQIETRHSVS CL FCPIGILTHVITK++TK
Sbjct: 178 ASAWIHLLVVDLFAARHIFQDGLKNQIETRHSVSFCLFFCPIGILTHVITKSMTK 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345802|ref|XP_003636964.1| hypothetical protein MTR_065s0045 [Medicago truncatula] gi|355502899|gb|AES84102.1| hypothetical protein MTR_065s0045 [Medicago truncatula]

 Score =  293 bits (751), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 150/236 (63%), Positives = 178/236 (75%), Gaps = 4/236 (1%)

Query: 13  MAISSCLCHPLVLPLKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGTELRSEWS 72
           M+ SSC  H   LP  +K I     VG+ +   + P S+ +      I+     L  +WS
Sbjct: 1   MSFSSCYSHS-PLPF-NKDIKLCRTVGQVK--LNFPFSITSNGVTEHISRSRFSLSGDWS 56

Query: 73  FLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVFAPKA 132
           F+GGSR+ ++P+ T+ +RH K   IHASW  G QL STVFT GT  VLPFYTLMV APK+
Sbjct: 57  FIGGSRIAVKPKATRSVRHPKRSQIHASWFMGSQLASTVFTWGTVAVLPFYTLMVLAPKS 116

Query: 133 ELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSEITLA 192
           ELT+KSMESS+PYVVLGVLYAYLL LSWTP+T+RL+FASKY LPEL  I KMFSSE+TLA
Sbjct: 117 ELTRKSMESSLPYVVLGVLYAYLLCLSWTPETVRLIFASKYLLPELSSIGKMFSSELTLA 176

Query: 193 SAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKSS 248
           SAWIHLL VDLFAARH+F DGL+NQIETRHSVS CL FCPIGILTHVITKA+TK++
Sbjct: 177 SAWIHLLVVDLFAARHIFRDGLKNQIETRHSVSFCLFFCPIGILTHVITKAMTKTT 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527490|ref|XP_003532342.1| PREDICTED: uncharacterized protein LOC100814584 [Glycine max]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/238 (62%), Positives = 174/238 (73%), Gaps = 4/238 (1%)

Query: 13  MAISSCLCH-PLVLPLK--DKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGTELRS 69
           M+ SSC  H PL   +    + +   G+VG+ Q      RS  AE    +I      L  
Sbjct: 1   MSFSSCFSHSPLTFKVNHLGQAMKPCGSVGKGQNFAFPIRSNGAELCKGRIVRSRVNLSG 60

Query: 70  EWSFLGGSRVIIRPQVTKFIRHQ-KGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVF 128
           +W+F+GGSR+I++P  T+ + H  K   +  S   G QL ST FT GT  VLPFYTLMV 
Sbjct: 61  DWNFMGGSRIIVKPTATRLLLHYPKRGQMKVSCFIGSQLASTAFTAGTIAVLPFYTLMVL 120

Query: 129 APKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSE 188
           APK+EL KKSMESSIPYVVL +LYAYLLYLSWTP+T+RL+FASKY LPELPGIAKMFSSE
Sbjct: 121 APKSELIKKSMESSIPYVVLSILYAYLLYLSWTPETVRLIFASKYLLPELPGIAKMFSSE 180

Query: 189 ITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTK 246
           +TLASAWIHLL +DLFAARHVF DGL+NQIETRHSVS CL FCPIGILTHVITKA+TK
Sbjct: 181 MTLASAWIHLLVIDLFAARHVFQDGLKNQIETRHSVSFCLFFCPIGILTHVITKAMTK 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357497225|ref|XP_003618901.1| hypothetical protein MTR_6g025680 [Medicago truncatula] gi|355493916|gb|AES75119.1| hypothetical protein MTR_6g025680 [Medicago truncatula]

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 138/240 (57%), Positives = 177/240 (73%), Gaps = 11/240 (4%)

Query: 13  MAISSCLCHPLVLPLKDKPIGTWGNVGEDQRLTSAPRSMNA---ETFGRQITGVGTELRS 69
           MA S+C C+      K   +G   N+ E +   S P  +N    E   + I     +L  
Sbjct: 1   MAFSTCFCNS-----KIDHLGMTTNLKEQKY--SFPIRINGAKLELCNKLIVKSRIKLIR 53

Query: 70  EWSFLGGSRVIIRPQVTKFIRH-QKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLMVF 128
           +WSF+GGSR++++ +V + +   +K   ++AS LSG QL S+ FT+GTA VLPFYTLMV 
Sbjct: 54  DWSFIGGSRIVVKQKVMRLVASPKKASPVNASLLSGSQLASSAFTIGTAAVLPFYTLMVL 113

Query: 129 APKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSE 188
           AP +ELTKKSM+S++PYV+LG+LYAYLLYLSWTP+T+ L+FASKY LPEL  I KMFSSE
Sbjct: 114 APNSELTKKSMQSNVPYVILGILYAYLLYLSWTPETVELLFASKYLLPELTSIGKMFSSE 173

Query: 189 ITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALTKSS 248
           +TLASAWIHLL +DLFAAR VF DG +NQIETRHSVSLCL FCPIGIL+HV+TKA+TK++
Sbjct: 174 MTLASAWIHLLVIDLFAARQVFQDGQENQIETRHSVSLCLFFCPIGILSHVVTKAMTKTT 233

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255626963|gb|ACU13826.1| unknown [Glycine max]

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/241 (58%), Positives = 174/241 (72%), Gaps = 7/241 (2%)

Query: 13  MAISSCLCH-PLVLPLKD--KPIGTWGNVGEDQRLTSAPRSMNAE---TFGRQITGVG-T 65
           MA SS   H PL L +    + I   G V + Q+ +   RS   E    +  Q+      
Sbjct: 1   MAFSSFFSHSPLALKIDRLGQTIKPCGTVEKGQKFSFPIRSNGGELELCYQSQLNQRSRV 60

Query: 66  ELRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTL 125
            L  +WSF+GGSR++++P   + +  +K   ++ASWLSG QL S+ FTLGT  VLPFYTL
Sbjct: 61  NLIRDWSFVGGSRIVVKPNFVRLVPFRKASRVYASWLSGSQLASSAFTLGTTAVLPFYTL 120

Query: 126 MVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMF 185
           MV AP +ELT+KSMESS+PYVVLG+LYAYLLY SWTP+T+ L+FASKY LPEL  I KMF
Sbjct: 121 MVLAPNSELTRKSMESSVPYVVLGILYAYLLYHSWTPETVGLIFASKYLLPELTSIGKMF 180

Query: 186 SSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKALT 245
           SSE+TLASAWIHLL +DLFAARHVF DGL+NQIETRHSVSLCL FCPIG+L+H ITK +T
Sbjct: 181 SSEMTLASAWIHLLVMDLFAARHVFLDGLENQIETRHSVSLCLFFCPIGVLSHAITKEMT 240

Query: 246 K 246
           K
Sbjct: 241 K 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2019718	220	ABA4 "abscisic acid (ABA)-defi	0.713	0.804	0.617	6.8e-56

TAIR|locus:2019718 ABA4 "abscisic acid (ABA)-deficient 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 110/178 (61%), Positives = 135/178 (75%)

Query:    67 LRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLM 126
             L   WSF+GGSR+ ++      + H+K   + ASWL+  Q+ S+VF +GT  VLPFYTLM
Sbjct:    38 LDHRWSFIGGSRISVQSNSYTVV-HKKFSGVRASWLTTTQIASSVFAVGTTAVLPFYTLM 96

Query:   127 VFAPKAELTKKSMESSIPXXXXXXXXXXXXXXSWTPDTLRLMFASKYWLPELPGIAKMFS 186
             V APKAE+TKK MESS+P              SWTP+TL+ MF+SKY LPEL GIAKMFS
Sbjct:    97 VVAPKAEITKKCMESSVPYIILGVLYVYLLYISWTPETLKYMFSSKYMLPELSGIAKMFS 156

Query:   187 SEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKAL 244
             SE+TLASAWIHLL VDLFAAR V++DGL+NQIETRHSVSLCLLFCP+GI++H +TKA+
Sbjct:   157 SEMTLASAWIHLLVVDLFAARQVYNDGLENQIETRHSVSLCLLFCPVGIVSHFVTKAI 214


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      248       234   0.00087  113 3  11 22  0.49    32
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  191 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.77u 0.18s 17.95t   Elapsed:  00:00:01
  Total cpu time:  17.77u 0.18s 17.95t   Elapsed:  00:00:01
  Start:  Sat May 11 02:58:31 2013   End:  Sat May 11 02:58:32 2013

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009517 "PSII associated light-harvesting complex II" evidence=IGI

GO:0010117 "photoprotection" evidence=IGI

GO:0032928 "regulation of superoxide anion generation" evidence=IMP

GO:0009688 "abscisic acid biosynthetic process" evidence=IMP

GO:0016122 "xanthophyll metabolic process" evidence=IMP

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_IV3238	hypothetical protein (246 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XVIII.1253.1	annotation not avaliable (470 aa)			•				•		0.504
	gw1.VI.134.1	annotation not avaliable (299 aa)			•						0.492
	grail3.0012022801	hypothetical protein (255 aa)			•				•		0.458
	estExt_fgenesh4_pg.C_LG_II1485	hypothetical protein (245 aa)			•						0.444
	eugene3.00101071	hypothetical protein (328 aa)			•						0.437
	gw1.70.142.1	hypothetical protein (191 aa)			•						0.430
	gw1.XIII.1190.1	SubName- Full=Putative uncharacterized protein; (300 aa)			•						0.413
	estExt_fgenesh4_pg.C_400233	hypothetical protein (208 aa)			•						0.408
	gw1.VIII.895.1	annotation not avaliable (217 aa)			•						0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
pfam14108	128	pfam14108, DUF4281, Domain of unknown function (DU	6e-48

>gnl|CDD|222547 pfam14108, DUF4281, Domain of unknown function (DUF4281)

 Score =  154 bits (391), Expect = 6e-48
 Identities = 56/133 (42%), Positives = 81/133 (60%), Gaps = 8/133 (6%)

Query: 109 STVFTLGTAGVLPFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLM 168
            T+FTL  A VLPF+ LM+FAP+  +T++ M S +P++ L +LY YLL LS TP+    M
Sbjct: 1   ETLFTLANALVLPFWLLMIFAPRWRVTRRVMASLLPFLALALLYLYLLALSLTPEGAGAM 60

Query: 169 FASKYWLPELPGIAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQI---ETRHSVS 225
                  P L G+A +FSS   + + W+H LA DLF  R ++ DG +  I    T  S+ 
Sbjct: 61  -----SFPSLDGVASLFSSPNGVLAGWVHYLAFDLFVGRWIYLDGRRRGIPHLLTAPSLL 115

Query: 226 LCLLFCPIGILTH 238
           L L+F P+G+L+H
Sbjct: 116 LTLMFGPVGLLSH 128

This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 147 and 232 amino acids in length. There are two completely conserved residues (W and P) that may be functionally important. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
PF14108	129	DUF4281: Domain of unknown function (DUF4281)	100.0
PF11196	97	DUF2834: Protein of unknown function (DUF2834); In	93.2

>PF14108 DUF4281: Domain of unknown function (DUF4281)

Probab=100.00  E-value=2.7e-44  Score=295.23  Aligned_cols=126  Identities=38%  Similarity=0.659  Sum_probs=119.3

Q ss_pred             hhHHHhhhhhHHHHHHHHHHcCCCchhHHhhhcchhHHHHHHHHHHHHHhhcCcchhhhhhhccCCCCCHHHHHHhhcCc
Q 025796          109 STVFTLGTAGVLPFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSE  188 (248)
Q Consensus       109 etlF~lan~~vLPfWlLMI~aPrw~~Tr~i~~S~lp~l~La~lY~~LL~~s~~p~~~~~~Fas~~~fpsL~gV~~LFs~~  188 (248)
                      |++|+++|.+++|+|++||++||||+||++++|.+++++++++|+++++.++.+++.+.+.    ++|||+||+++|++|
T Consensus         1 E~~F~~~~~~~lp~W~lmi~~P~~~~T~~~~~s~~~~~~l~~~Y~~ll~~~~~~~~~~~~~----~~~sL~~v~~lf~~~   76 (129)
T PF14108_consen    1 ETLFNLANALALPFWLLMIFAPRWRVTRRLMRSPVPPLPLALAYVALLAPSLGPSGLGVMA----AFPSLEGVRQLFSSP   76 (129)
T ss_pred             ChhHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHcCccchhhhc----cCCCHHHHHHHHcCc
Confidence            7999999999999999999999999999999999999999999999999999887765322    289999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhHhhCC---cchhHHHHHhhhhhHHHHHH
Q 025796          189 ITLASAWIHLLAVDLFAARHVFHDGLQNQI---ETRHSVSLCLLFCPIGILTH  238 (248)
Q Consensus       189 ~~vaagWvHyLAfDLFVGRWI~~Da~~~GI---pt~hsLlLcLmfGPlGLL~y  238 (248)
                      ++++++|+|||+|||||||||++|++|+||   ++.|++++|+|+||+||++|
T Consensus        77 ~~~~~~W~H~LafDLfvGrwi~~d~~~~gi~~~~~~~~L~Lt~~~GP~GLl~~  129 (129)
T PF14108_consen   77 NAVLAGWVHYLAFDLFVGRWIYLDARRRGIPHLLTAPSLLLTLMFGPLGLLLY  129 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHhhHHHhcC
Confidence            999999999999999999999999999999   77799999999999999987

>PF11196 DUF2834: Protein of unknown function (DUF2834); InterPro: IPR021362 This is a bacterial family of uncharacterised proteins

Probab=93.20  E-value=1.2  Score=35.54  Aligned_cols=64  Identities=13%  Similarity=0.115  Sum_probs=42.2

Q ss_pred             HHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHhhHhhCCcchhH-HHHHhhhh-hHHHHHHHHHHH
Q 025796          179 PGIAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHS-VSLCLLFC-PIGILTHVITKA  243 (248)
Q Consensus       179 ~gV~~LFs~~~~vaagWvHyLAfDLFVGRWI~~Da~~~GIpt~hs-LlLcLmfG-PlGLL~ylltra  243 (248)
                      +=+.+.++||......|==+++--. .--||+.|++|+|+..++. +++|+..| =.|+-+|+..|.
T Consensus        30 ~f~~~~~~n~as~~~~~Dl~i~ai~-~~vwi~~E~rr~~ir~~w~~i~~t~~vgvs~glPLyL~lRe   95 (97)
T PF11196_consen   30 LFFADAFANPASSFLSWDLLIAAIA-LLVWIVVEARRLGIRHWWLYIVLTFFVGVSFGLPLYLYLRE   95 (97)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456788887555433322222222 2379999999999975544 56667777 788999988875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00