Citrus Sinensis ID: 025952

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP
cHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEEEccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccc
cHHHHHHHccHHHccccHHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHccccccc
masntlmscgiattafpsvlssskskfftavslpaaanatskyamsadwmpgeprppyldgsapgdfgfdplrlgevpenlerykeSELIHCRWAMLavpgilvpealglgnwvqaqewaavpggqatylgtpvpwgtlptILVIEFLSIAFVEHQrsmekdpekkkypggafdplgfskdpqkfEEYKVKEIKNGRLALLAFVGFcvqqsaypgtgplenlathladpwhnnigdviiprgivp
MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRsmekdpekkkypgGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP
MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP
********CGIATTAFPSVL*****KFFTAVSLP********************************FGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVE******************************FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGI**
*AS************************************************GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIV*
MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEH***********KYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP
**********************************************ADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query245 2.2.26 [Sep-21-2011]
P12360246 Chlorophyll a-b binding p N/A no 0.995 0.991 0.837 1e-117
Q01667241 Chlorophyll a-b binding p yes no 0.971 0.987 0.854 1e-112
Q9SDM1245 Chlorophyll a-b binding p N/A no 0.979 0.979 0.731 1e-103
Q9XF88287 Chlorophyll a-b binding p no no 0.869 0.742 0.383 2e-37
P27521251 Chlorophyll a-b binding p no no 0.848 0.828 0.390 2e-37
Q07473290 Chlorophyll a-b binding p no no 0.759 0.641 0.401 7e-37
P10708270 Chlorophyll a-b binding p N/A no 0.877 0.796 0.376 4e-35
Q9SQL2252 Chlorophyll a-b binding p N/A no 0.853 0.829 0.380 4e-35
Q36718231 Chlorophyll a-b binding p N/A no 0.751 0.796 0.407 2e-34
P13869270 Chlorophyll a-b binding p N/A no 0.877 0.796 0.380 9e-34
>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1 Back     alignment and function desciption
 Score =  420 bits (1079), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/246 (83%), Positives = 219/246 (89%), Gaps = 2/246 (0%)

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSADWMPGEPRPPYL 59
           MASNTLMSCGI     PS LSS+KSKF  A+ +   A N  S+++MSADWMPG+PRP YL
Sbjct: 1   MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYL 59

Query: 60  DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
           DGSAPGDFGFD L LGEVP NLERYKESELIHCRWAMLAVPGI+VPEALGLGNWV+AQEW
Sbjct: 60  DGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEW 119

Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
           AA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFDPLG+S
Sbjct: 120 AAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 179

Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
           KDP KFEE KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNIGDVII
Sbjct: 180 KDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 239

Query: 240 PRGIVP 245
           P+GI P
Sbjct: 240 PKGIFP 245
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Solanum lycopersicum (taxid: 4081)
>sp|Q01667|CAB6_ARATH Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1 Back     alignment and function description
>sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1 Back     alignment and function description
>sp|P27521|CA4_ARATH Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1 Back     alignment and function description
>sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1 Back     alignment and function description
>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1 Back     alignment and function description
>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1 Back     alignment and function description
>sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1 Back     alignment and function description
>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
449452104246 PREDICTED: chlorophyll a-b binding prote 1.0 0.995 0.890 1e-126
388491152241 unknown [Lotus japonicus] 0.971 0.987 0.858 1e-119
356559472246 PREDICTED: chlorophyll a-b binding prote 0.991 0.987 0.846 1e-119
170388246 chlorophyll a/b-binding protein [Solanum 0.995 0.991 0.849 1e-118
388521809241 unknown [Lotus japonicus] 0.971 0.987 0.854 1e-118
224100797244 light-harvesting complex I protein Lhca1 0.987 0.991 0.872 1e-117
225449078244 PREDICTED: chlorophyll a-b binding prote 0.995 1.0 0.861 1e-117
255585090244 chlorophyll A/B binding protein, putativ 0.995 1.0 0.873 1e-117
224109746243 light-harvesting complex I protein Lhca1 0.991 1.0 0.869 1e-116
407971012246 chlorophyll a-b binding protein 6A, chlo 0.995 0.991 0.837 1e-115
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Cucumis sativus] gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/246 (89%), Positives = 233/246 (94%), Gaps = 1/246 (0%)

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAA-NATSKYAMSADWMPGEPRPPYL 59
           MASNTLMSCGIATTAFPSVLSSSKSKF   V +   A NA+S+++MSA+WMPG+PRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 60  DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
           DGSAPGDFGFDPL LGEVPENLER+KESELIHCRWAMLAVPGILVPEALGLGNWV+AQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
           AAVPGGQATYLG PVPWGTLPTILVIEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+S
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
           KDP+K +EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD+II
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 240 PRGIVP 245
           PR I P
Sbjct: 241 PRTISP 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum] gi|225895|prf||1402358A photosystem I protein CAB Back     alignment and taxonomy information
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa] gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic isoform 1 [Vitis vinifera] gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa] gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides] gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum lycopersicum] gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic; AltName: Full=LHCI type I CAB-6A; AltName: Full=Light-harvesting complex I 26 kDa protein; Flags: Precursor gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
TAIR|locus:2082717241 LHCA1 "photosystem I light har 0.971 0.987 0.854 3.3e-111
TAIR|locus:2149765290 LHCB4.1 "light harvesting comp 0.620 0.524 0.484 7.5e-42
TAIR|locus:2097608287 LHCB4.2 "light harvesting comp 0.620 0.529 0.477 7.5e-42
TAIR|locus:2047751276 LHCB4.3 "light harvesting comp 0.567 0.503 0.468 4e-37
TAIR|locus:2082767257 LHCA2 "photosystem I light har 0.946 0.902 0.387 6.3e-37
TAIR|locus:2079117251 LHCA4 "light-harvesting chloro 0.848 0.828 0.395 1.9e-35
TAIR|locus:2122794280 LHCB5 "light harvesting comple 0.734 0.642 0.447 4e-35
TAIR|locus:2011691327 AT1G76570 [Arabidopsis thalian 0.289 0.217 0.561 5.1e-33
TAIR|locus:2825741256 Lhca5 "photosystem I light har 0.734 0.703 0.406 8.5e-33
TAIR|locus:2040934265 LHB1B2 "photosystem II light h 0.881 0.815 0.402 2.3e-32
TAIR|locus:2082717 LHCA1 "photosystem I light harvesting complex gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1098 (391.6 bits), Expect = 3.3e-111, P = 3.3e-111
 Identities = 206/241 (85%), Positives = 219/241 (90%)

Query:     1 MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
             MASN+LMSCGIA   +PS+LSSSKSKF +A V LP A N   +  M+A WMPGEPRP YL
Sbjct:     1 MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGNV-GRIRMAAHWMPGEPRPAYL 58

Query:    60 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
             DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEW
Sbjct:    59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 118

Query:   120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
             AA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+S
Sbjct:   119 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 178

Query:   180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
             KDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++I
Sbjct:   179 KDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238

Query:   240 P 240
             P
Sbjct:   239 P 239
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0015979 "photosynthesis" evidence=ISS
GO:0016020 "membrane" evidence=IEA;IDA
GO:0016168 "chlorophyll binding" evidence=ISS
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009768 "photosynthesis, light harvesting in photosystem I" evidence=IMP
GO:0010287 "plastoglobule" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009637 "response to blue light" evidence=IEP;RCA
GO:0010114 "response to red light" evidence=IEP;RCA
GO:0010218 "response to far red light" evidence=IEP;RCA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
TAIR|locus:2149765 LHCB4.1 "light harvesting complex photosystem II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097608 LHCB4.2 "light harvesting complex photosystem II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047751 LHCB4.3 "light harvesting complex photosystem II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082767 LHCA2 "photosystem I light harvesting complex gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079117 LHCA4 "light-harvesting chlorophyll-protein complex I subunit A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122794 LHCB5 "light harvesting complex of photosystem II 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011691 AT1G76570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825741 Lhca5 "photosystem I light harvesting complex gene 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040934 LHB1B2 "photosystem II light harvesting complex gene B1B2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q01667CAB6_ARATHNo assigned EC number0.85470.97140.9875yesno
Q9SDM1CB121_HORVUNo assigned EC number0.73140.97950.9795N/Ano
P12360CB11_SOLLCNo assigned EC number0.83730.99590.9918N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 1e-166
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 8e-54
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 3e-52
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 4e-49
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 6e-48
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 4e-45
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 5e-45
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 4e-44
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 7e-42
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 4e-41
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 7e-40
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 1e-23
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 2e-14
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 3e-10
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 1e-06
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 2e-04
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 0.002
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information 
 Score =  457 bits (1177), Expect = e-166
 Identities = 219/245 (89%), Positives = 231/245 (94%), Gaps = 2/245 (0%)

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
           MASNTLMSCGIA   FPS+LSSSKSKF ++V LP A N +S+  MSADWMPG+PRPPYLD
Sbjct: 1   MASNTLMSCGIAA-VFPSLLSSSKSKFASSVPLPNA-NGSSRVTMSADWMPGQPRPPYLD 58

Query: 61  GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
           GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWV+AQEWA
Sbjct: 59  GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 118

Query: 121 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 180
           A+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+SK
Sbjct: 119 AIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSK 178

Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240
           DP+KFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD+IIP
Sbjct: 179 DPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238

Query: 241 RGIVP 245
           R I P
Sbjct: 239 RSISP 243

Length = 243
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 245
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00101 250 Photosystem I light-harvesting complex type 4 prot 99.54
PLN00098 267 light-harvesting complex I chlorophyll a/b-binding 99.52
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 99.49
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 99.45
PLN00170 255 photosystem II light-harvesting-Chl-binding protei 99.42
PLN00187286 photosystem II light-harvesting complex II protein 99.41
PLN00097 244 photosystem I light harvesting complex Lhca2/4, ch 99.41
PLN00171 324 photosystem light-harvesting complex -chlorophyll 99.41
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.4
PLN00025 262 photosystem II light harvesting chlorophyll a/b bi 99.4
PLN00100 246 light-harvesting complex chlorophyll-a/b protein o 99.37
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.34
PLN00099 243 light-harvesting complex IChlorophyll A-B binding 99.32
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.08
PLN00084214 photosystem II subunit S (PsbS); Provisional 98.1
PHA0233735 putative high light inducible protein 98.0
PLN00014250 light-harvesting-like protein 3; Provisional 97.42
PHA0233735 putative high light inducible protein 97.1
PLN00014250 light-harvesting-like protein 3; Provisional 94.54
PLN00084214 photosystem II subunit S (PsbS); Provisional 91.39
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-72  Score=501.05  Aligned_cols=243  Identities=87%  Similarity=1.460  Sum_probs=215.4

Q ss_pred             CchhhhhhhhhhhcccccccccccccccccccchhhhcccccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhh
Q 025952            1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPEN   80 (245)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~~   80 (245)
                      |+|+++++|..+++-++++.+.|+ +|++..+.. -...+.|++++..|+|+.++|+||||++|||+|||||||++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~w~P~~~~P~~Ldg~~pgd~GfDPlgls~~~~~   78 (243)
T PLN00099          1 MASNTLMSCGIAAVFPSLLSSSKS-KFASSVPLP-NANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPEN   78 (243)
T ss_pred             CcchhhhhcCccccchhhhhhhhh-hhhcccccc-cCCccccccccccccCCCCCCccCCCCCCcccCCCccccccCHHH
Confidence            899999999986555555554444 454443322 234468889999999999999999999999999999999999999


Q ss_pred             HhHHHHHhhhhcchhhhhcccchhhhhccCCCccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcc
Q 025952           81 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME  160 (245)
Q Consensus        81 l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~  160 (245)
                      ++||||+|||||||||||++|+++||+++.+.|+++.+|.+++++...|.+++.+|+.++.++++|+++||++|.+|+.+
T Consensus        79 ~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~  158 (243)
T PLN00099         79 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME  158 (243)
T ss_pred             HHHHHHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999988888988888888888888888888888888899999999999999988766


Q ss_pred             cCCCCCCCCCCCCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccccccc
Q 025952          161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP  240 (245)
Q Consensus       161 ~~~~~~~~PGd~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~~~  240 (245)
                      ++++++.||||.||||||.+|+++++++|+|||||||||||||+||++|+..+||++|++||.+|++||||+||.+.++|
T Consensus       159 ~~~~~~~yPGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~~  238 (243)
T PLN00099        159 KDPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP  238 (243)
T ss_pred             CCCCCCcCCCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeecc
Confidence            65556789999999999999999999999999999999999999999999567999999999999999999999999999


Q ss_pred             CCCCC
Q 025952          241 RGIVP  245 (245)
Q Consensus       241 ~~~~~  245 (245)
                      ++++|
T Consensus       239 ~~~~~  243 (243)
T PLN00099        239 RSISP  243 (243)
T ss_pred             cCCCC
Confidence            99987

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 1e-113
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 1e-101
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 6e-91
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 1e-38
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 2e-34
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 3e-34
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 2e-31
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 2e-30
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 3e-30
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 3e-30
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 4e-28
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 3e-25
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 6e-24
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 3e-22
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 8e-18
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 3e-14
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure 
Iteration: 1

 Score =  402 bits (1034), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/241 (85%), Positives = 219/241 (90%), Gaps = 3/241 (1%)
Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFFTA-VSLPAAANATSKYAMSADWMPGEPRPPYL 59
           MASN+LMSCGIA   +PS+LSSSKSKF +A V LP A N   +  M+A WMPGEPRP YL
Sbjct: 1   MASNSLMSCGIAAV-YPSLLSSSKSKFVSAGVPLPNAGN-VGRIRMAAHWMPGEPRPAYL 58
Query: 60  DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 119
           DGSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEW
Sbjct: 59  DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 118
Query: 120 AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFS 179
           AA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+S
Sbjct: 119 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 178
Query: 180 KDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 239
           KDP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++I
Sbjct: 179 KDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238
Query: 240 P 240
           P
Sbjct: 239 P 239
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 1e-76
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 8e-49
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 4e-48
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 7e-47
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 9e-47
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 3e-43
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
 Score =  231 bits (588), Expect = 1e-76
 Identities = 202/240 (84%), Positives = 215/240 (89%), Gaps = 1/240 (0%)

Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLD 60
           MASN+LMSCGIA   +PS+LSSSKSKF +A      A    +  M+A WMPGEPRP YLD
Sbjct: 1   MASNSLMSCGIAA-VYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLD 59

Query: 61  GSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWA 120
           GSAPGDFGFDPL LGEVP NLERYKESELIHCRWAMLAVPGILVPEALG GNWV+AQEWA
Sbjct: 60  GSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWA 119

Query: 121 AVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSK 180
           A+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKDPEKKKYPGGAFDPLG+SK
Sbjct: 120 ALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSK 179

Query: 181 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240
           DP+K EE KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++IP
Sbjct: 180 DPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 239
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.44
2wsc_4 251 Chlorophyll A-B binding protein P4, chloroplastic; 99.39
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 99.39
2bhw_A 232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.39
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 99.37
2wsc_1 241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.25
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
Probab=100.00  E-value=1.2e-69  Score=480.49  Aligned_cols=241  Identities=81%  Similarity=1.359  Sum_probs=155.6

Q ss_pred             CchhhhhhhhhhhcccccccccccccccccccchhhhcccccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCChhh
Q 025952            1 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPEN   80 (245)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~~l~g~~pgd~gFDPLGLa~~~~~   80 (245)
                      |++..+.||.+++++.|.++++++++++++.+.++ ...++|+++++.|+|+.++|+||||++|||+|||||||++++++
T Consensus         1 ~~~~~~~~~~~~a~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~sm~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~~~~   79 (241)
T 2wsc_1            1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPN-AGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPAN   79 (241)
T ss_dssp             -------------------------------------------------------------CTTSSCCCSSTTTTTTTTH
T ss_pred             CchHHHHHHHHHhcCccccchhhhhhccccCcccc-cccccccccccccCCCCCCcccccCCCCCcCCcCccccCCCHHH
Confidence            88888888888887766677777666566655544 35578999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhhhhcchhhhhcccchhhhhccCCCccccccccccCCCcccccCCCCCCCchhHHHHHHHHHHHHHHHhhhcc
Q 025952           81 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSME  160 (245)
Q Consensus        81 l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~~a~~~~~~p~g~~~~~~~p~~~~~~p~~~~~~~~~ig~~E~~r~~~  160 (245)
                      ++||||+|||||||||||++|++++|+++.++|.++.+|.+++++.+.|.+.+++|+.+++++++|+++||++|.+|..+
T Consensus        80 ~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~  159 (241)
T 2wsc_1           80 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME  159 (241)
T ss_dssp             HHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSC
T ss_pred             HHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999998888988888888999888888888889889999999999999999999877


Q ss_pred             cCCCCCCCCCCCCCCCCCCCChHHHHHHhHHHHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccccccc
Q 025952          161 KDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP  240 (245)
Q Consensus       161 ~~~~~~~~PGd~fDPlg~~~~~~~~~~~k~kELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~~~~~  240 (245)
                      ++++++.||||.|||||+.+|+++++++|.+|||||||||+|++|+++|+..+||++|++||.+|++|||||||.++++|
T Consensus       160 ~~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~~  239 (241)
T 2wsc_1          160 KDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP  239 (241)
T ss_dssp             CSSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC---------
T ss_pred             cCCCCCCCCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeecc
Confidence            66667789999999999999999999999999999999999999999999557999999999999999999999999998


Q ss_pred             CC
Q 025952          241 RG  242 (245)
Q Consensus       241 ~~  242 (245)
                      ++
T Consensus       240 ~~  241 (241)
T 2wsc_1          240 FN  241 (241)
T ss_dssp             --
T ss_pred             CC
Confidence            74
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 245
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 7e-58
d1rwta_ 218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 1e-08
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  181 bits (459), Expect = 7e-58
 Identities = 79/199 (39%), Positives = 101/199 (50%), Gaps = 14/199 (7%)

Query: 49  WMPGEP--RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE 106
           ++       P YL G  PGD+G+D   L   PE   + +E E+IHCRWAML   G + PE
Sbjct: 11  YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 70

Query: 107 ALGLGNWVQAQE------WAAVPGGQATYLGTP--VPWGTLPTILVIEFLSIAFVEHQRS 158
            L        +             G   YLG P  V   ++  I   + + +  VE  R 
Sbjct: 71  LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 130

Query: 159 MEK---DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPG 215
                 +     YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G
Sbjct: 131 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 189

Query: 216 TGPLENLATHLADPWHNNI 234
            GPLENLA HLADP +NN 
Sbjct: 190 KGPLENLADHLADPVNNNA 208
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_ 218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.46
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=6.6e-60  Score=411.11  Aligned_cols=191  Identities=41%  Similarity=0.721  Sum_probs=152.8

Q ss_pred             ccccCCC--CCCCCCCCCCCCCCCCCcccCCCCCChhhHhHHHHHhhhhcchhhhhcccchhhhhccCCCcc-cccccc-
Q 025952           45 MSADWMP--GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWV-QAQEWA-  120 (245)
Q Consensus        45 ~~~~~~p--~~~~P~~l~g~~pgd~gFDPLGLa~~~~~l~~~ReAELkHGRvAMLAvvG~lv~E~~~~~~~~-~a~~~~-  120 (245)
                      .+++|+|  ....|+||||++|||+|||||||++++++++||||+|||||||||||++|++++|+++..++. ....|. 
T Consensus         7 ~r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~~~~~~~~~~   86 (218)
T d1rwta_           7 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK   86 (218)
T ss_dssp             TCCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCCSHHH
T ss_pred             CCcccCCccccCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCCCCCCccccc
Confidence            3577997  346899999999999999999999999999999999999999999999999999997654331 111111 


Q ss_pred             ----ccCCCcccccCCCC--CCCchhHHHHHHHHHHHHHHHhhhcccC---CCCCCCCCCCCCCCCCCCChHHHHHHhHH
Q 025952          121 ----AVPGGQATYLGTPV--PWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGAFDPLGFSKDPQKFEEYKVK  191 (245)
Q Consensus       121 ----~~p~g~~~~~~~p~--~~~~~p~~~~~~~~~ig~~E~~r~~~~~---~~~~~~PGd~fDPlg~~~~~~~~~~~k~k  191 (245)
                          ..+.+...+...+.  .+..+..++++++..++.+|..|.....   ..+..|||++|||+++.+++++++++|+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~fdPlg~~~~~e~~~~~k~k  166 (218)
T d1rwta_          87 AGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK  166 (218)
T ss_dssp             HGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCBTTBCCSSSSCCCGGGCTTCTTCSHHHHHHHHHH
T ss_pred             ccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCCCcccccCCCCCCCCccccccCCCHHHHHHHHHH
Confidence                11222222333332  2334445666778889999988765432   23456788899999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHhcccccCCCchhhhHHhhcCcccccccc
Q 025952          192 EIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD  236 (245)
Q Consensus       192 ELkNGRLAMlai~G~~~q~~~~tG~gPl~~L~~h~~~P~~~n~~~  236 (245)
                      ||||||||||||+||++|| .+||++|++||.+|++||+|+||++
T Consensus       167 ElkNGRLAMlAi~G~~~qe-~vtG~gp~~nl~~h~~~P~~~n~~~  210 (218)
T d1rwta_         167 EIKNGRLAMFSMFGFFVQA-IVTGKGPLENLADHLADPVNNNAWN  210 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCSCHHHHHHHHHHCTTTSSGGG
T ss_pred             HHHHhHHHHHHHHHHHHhh-hhcCCCHHHHHHHHhcCchhhhHHH
Confidence            9999999999999999999 8999999999999999999999985
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure