Citrus Sinensis ID: 026038

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MLQMQCLNLAPKFNPLQSPGCSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINLIKHNIN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccHccccccccccccccccHHcccHHHcccccEEEEEEcccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcEEEEEHccccccEHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccEEEEEHHHHHHHccc
Coil and Loop (DISEMBL)
mlqmqclnlapkfnplqspgcsrkfaspivtqrhkssikcssqssfsfpnqnkishnnnkppckplvplalqdghalqqseddnkpaaapSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVcflpvqslsqvtPAFLLGVLKAVVAQIFMNISLCSLNQICDVeidkinkpylplasgelsmgTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLtgaaysvpvsGLILYNIINLIKHNIN
Flexible Loop (DISEMBL)
MLQMQCLNLapkfnplqspgcSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINLIKHNIN
Low Complexity Region (SEG)
MLQMQCLNLAPKFNPLQSPGCSRKFASPIVTQRHKssikcssqssfsFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICagsallslalaflsgsPAVLCAVIAWGLTGAAYSVPVSGLILYNIINLIKHNIN
Disordered region (IsUnstruct)
*******************************************************************************************FLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINLIKH***
Disordered Region (DISOPRED)
*************************************************************************************************RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINLIKHNI*
Disordered Region (DISEMBL)
MLQMQCLNLAPKFNPLQSPGCSRKFASP********************PNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINLIKHNIN
Disordered Region (DISPRO)
****QCLNLAPKFNPLQSPGCSRKFASPIVTQRHKSSIKCSSQSSF*******************************************PSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINLIKHNIN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQMQCLNLAPKFNPLQSPGCSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINLIKHNIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
B7FA90	404	Probable homogentisate ph	yes	no	0.897	0.542	0.343	2e-25
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.528	0.328	0.441	2e-25
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.553	0.330	0.4	3e-22
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.704	0.419	0.340	2e-17
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.405	0.256	0.316	1e-05
Q0D576	379	Probable homogentisate ph	no	no	0.172	0.110	0.523	3e-05
Q9UWY6	282	Digeranylgeranylglyceryl	yes	no	0.233	0.202	0.385	0.0007

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 124/236 (52%), Gaps = 17/236 (7%)

Query: 4   MQCLNLAPKFNPLQSPGCS-----RK--FASPI--VTQRHKSSIKCSSQSSF--SFPNQN 52
           M  L L P     ++PG +     R+  F  P+  + +  K  +  SSQ +   SF    
Sbjct: 1   MDSLRLRPSLLAARAPGAASLPPLRRDHFLPPLCSIHRNGKRPVSLSSQRTQGPSFDQCQ 60

Query: 53  KI---SHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRY 109
           K      ++++ P +P    A   G  LQ S + +  +   S  + +   L+A    +R 
Sbjct: 61  KFFGWKSSHHRIPHRPTSSSADASGQPLQSSAEAHDSS---SIWKPISSSLDAFYRFSRP 117

Query: 110 YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI 169
           +  I   +S+ SV  L V++LS V+P FL G+L+AVVA +FMNI +  LNQ+ D+EIDK+
Sbjct: 118 HTVIGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKV 177

Query: 170 NKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV 225
           NKP LPLASGE S  TG+A+ +  A +S  L +  GS  +  A+    + G AYS+
Sbjct: 178 NKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSI 233

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 84/129 (65%)

Query: 97  KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLC 156
           +  L+A    +R +  I  ++S+ SV FL V+ +S ++P    G+L+AVVA + MNI + 
Sbjct: 94  RDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIV 153

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
            LNQ+ DVEIDK+NKPYLPLASGE S+ TGIAI A  +++S  L ++ GS  +  A+   
Sbjct: 154 GLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVS 213

Query: 217 GLTGAAYSV 225
            + G AYS+
Sbjct: 214 FMLGTAYSI 222

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  105 bits (261), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 83/135 (61%)

Query: 93  LEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMN 152
           L+ VK  L+A    +  Y  I I +   S   L V+ LS ++ +FL+GVL+ V+ Q+F+ 
Sbjct: 106 LDSVKNVLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIE 165

Query: 153 ISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCA 212
           I LC +NQ+ D+EIDKINKP+LP+ASG+ S  TG+ I A    LS    +++GS  ++C 
Sbjct: 166 IYLCGVNQLYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICN 225

Query: 213 VIAWGLTGAAYSVPV 227
           ++    +  AYS+ V
Sbjct: 226 LVVIASSWTAYSIDV 240

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 4/176 (2%)

Query: 50  NQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRY 109
           N+   + N +K   K  V  A+ +    Q  E + +     S  + V   L+      R 
Sbjct: 68  NEGGSTSNTSKECEKKYVVNAISE----QSFEYEPQTRDPESIWDSVNDALDIFYKFCRP 123

Query: 110 YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI 169
           YA   I++  T    + V+ LS ++ AF +G L+ VVA I ++I    LNQ+CD+EIDKI
Sbjct: 124 YAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKI 183

Query: 170 NKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV 225
           NKP LPLASG+LS    + I A S +L L  A++  S  +   V    +  +AY+V
Sbjct: 184 NKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNV 239

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 2/101 (1%)

Query: 127 VQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTG 186
           +++   +  + +L  L  ++A I  N  +  +NQI D+ IDK+NKPYLP+A+G+LS+ + 
Sbjct: 119 IENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSA 178

Query: 187 IAICAGSALLSLALAFLSGSPAVLCAVIAWGL-TGAAYSVP 226
             +    A+  L +   +  P +  ++ + GL  G  YSVP
Sbjct: 179 WLLVIFFAIAGLLVVGFNFGPFI-TSLYSLGLFLGTIYSVP 218

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 31/42 (73%)

Query: 144 AVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGT 185
            +VA I  N  +  +NQI D+ IDK+NKPYLP+A+G+LS+ T
Sbjct: 129 GLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQT 170

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q9UWY6|DGGGP_SULSO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ubiA-2 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 37/57 (64%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVI 214
           +N + DVEIDKINKPY P+ SG++S+    A+     ++ +AL+ L    A++ A++
Sbjct: 56  INDVYDVEIDKINKPYRPIPSGKISVNKAKALSIALFIIGIALSILLNIYALVIALV 112

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. Can not use other prenyl donors, i.e. farnesyl diphosphate (FPP) and phytyl diphosphate. Moreover, 4-hydroxybenzoate, 1,4-dihydroxy 2-naphthoate, homogentisate, and alpha-glycerophosphate do not function as prenyl acceptor substrates.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
51949754	411	homogentisate phytylprenyltransferase [M	0.614	0.364	0.463	3e-27
301154093	394	Chlorophyll synthase [Musa balbisiana]	0.881	0.545	0.360	4e-26
301154114	398	Chlorophyll synthase [Musa balbisiana]	0.881	0.540	0.376	4e-26
357479603	443	Homogentisate phytyltransferase [Medicag	0.614	0.338	0.456	5e-26
81295660	400	homogentisate phytyltransferase VTE2-1 [	0.676	0.412	0.403	5e-26
359806410	395	homogentisate phytyltransferase 1, chlor	0.614	0.379	0.443	2e-25
449461195	409	PREDICTED: homogentisate phytyltransfera	0.606	0.361	0.412	5e-25
169658921	407	flavonoid prenyltransferase [Sophora fla	0.606	0.363	0.459	6e-25
339759328	407	genistein 6-dimethylallyltransferase [So	0.606	0.363	0.412	8e-25
326531796	397	predicted protein [Hordeum vulgare subsp	0.610	0.375	0.434	8e-25

>gi|51949754|gb|AAU14795.1| homogentisate phytylprenyltransferase [Medicago sativa]

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 94/151 (62%), Gaps = 1/151 (0%)

Query: 78  QQSEDDNKPAAAP-SFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA 136
           +QS +   PA  P + L+ VK  L+A    +R +  I   +S+ SV  L V+ LS ++P 
Sbjct: 92  EQSFESEHPAFDPKNILDTVKNSLDAFYRFSRPHTVIGTALSIISVSLLAVEKLSDISPL 151

Query: 137 FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALL 196
           F  GVL+AVVA +FMNI +  LNQ+ DVEIDKINKPYLPLASGE S  TG  I   S++L
Sbjct: 152 FFTGVLEAVVAALFMNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFATGAIIVVSSSIL 211

Query: 197 SLALAFLSGSPAVLCAVIAWGLTGAAYSVPV 227
           S  LA++ GS  +  A+    + G AYS+ V
Sbjct: 212 SFWLAWIVGSWPLFWALFISFVLGTAYSINV 242

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154093|emb|CBW30171.1| Chlorophyll synthase [Musa balbisiana]

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/230 (36%), Positives = 125/230 (54%), Gaps = 15/230 (6%)

Query: 4   MQCLNLAP-KFNPLQSPGCSRKF----ASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNN 58
           M  L L P  F P +S  CSR+     +  ++ +    ++ CS +     P  +   HN+
Sbjct: 1   MDSLLLRPFSFFPCRSSRCSRRGCYMPSQYLIRKTSNITVGCSVEGHKWGPVNHIFGHND 60

Query: 59  NKPPCKPLVPL---ALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINI 115
            K     LV      L   +A  +    +KP A  S  +     LNA    +R +  I  
Sbjct: 61  RK-----LVHTRTNELSHLNATSRHPSGSKPEA--SMWKSALTSLNAFYRFSRPHTVIGT 113

Query: 116 IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLP 175
           I+S+ SV  L V+SL+ ++P+FL G+L+AV+A +FMNI +  LNQ+ D+EIDK+NKP LP
Sbjct: 114 IMSIISVSLLAVESLTDISPSFLTGLLEAVIAALFMNIYIVGLNQVYDIEIDKVNKPNLP 173

Query: 176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV 225
           LASGE S+ TG+A+   SA +S  +A++ GS  +  A+    + G AYSV
Sbjct: 174 LASGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLFWALFISFILGTAYSV 223

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154114|emb|CBW30209.1| Chlorophyll synthase [Musa balbisiana]

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 126/231 (54%), Gaps = 16/231 (6%)

Query: 4   MQCLNLAP-KFNPLQSPGCSRKFASPIVTQ---RHKSSIK--CSSQSSFSFPNQNKISHN 57
           M  L L P  F P +S  CSR+    + +Q   R  S+I   CS +     P  +   HN
Sbjct: 1   MDSLLLRPFSFFPCRSSRCSRRGGCYMPSQYLIRKTSNITVGCSVEGHKWGPVNHIFGHN 60

Query: 58  NNKPPCKPLVPL---ALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQIN 114
           + K     LV      L   +A  +    +KP A  S  +     LNA    +R +  I 
Sbjct: 61  DRK-----LVHTRTNELSHLNATSRHPSGSKPEA--SMWKSALTSLNAFYRFSRPHTVIG 113

Query: 115 IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL 174
            I+S+ SV  L V+SL+ ++P+FL G+L+AV+A +FMNI +  LNQ+ D+EIDK+NKP L
Sbjct: 114 TIMSIISVSLLAVESLTDISPSFLTGLLEAVIAALFMNIYIVGLNQVYDIEIDKVNKPNL 173

Query: 175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV 225
           PLASGE S+ TG+A+   SA +S  +A++ GS  +  A+    + G AYSV
Sbjct: 174 PLASGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLFWALFISFILGTAYSV 224

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479603|ref|XP_003610087.1| Homogentisate phytyltransferase [Medicago truncatula] gi|355511142|gb|AES92284.1| Homogentisate phytyltransferase [Medicago truncatula]

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 92/151 (60%), Gaps = 1/151 (0%)

Query: 78  QQSEDDNKPAAAP-SFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA 136
           +QS +   PA  P + L  VK  L+A    +R +  I   +S+ SV  L  + LS ++P 
Sbjct: 92  EQSFESEHPAFDPKNILVAVKNSLDAFYRFSRPHTVIGTALSIISVSLLAAEKLSDISPL 151

Query: 137 FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALL 196
           F  GVL+AVVA +FMNI +  LNQ+ DVEIDKINKPYLPLASGE S  TG  I   S++L
Sbjct: 152 FFTGVLEAVVAALFMNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFATGAIIVVSSSIL 211

Query: 197 SLALAFLSGSPAVLCAVIAWGLTGAAYSVPV 227
           S  LA++ GS  +  A+    + G AYS+ V
Sbjct: 212 SFWLAWIVGSWPLFWALFISFVLGTAYSINV 242

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|81295660|gb|ABB70123.1| homogentisate phytyltransferase VTE2-1 [Triticum aestivum]

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 103/176 (58%), Gaps = 11/176 (6%)

Query: 50  NQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRY 109
           + ++ISH +     K         G +LQ   + + PA   SF + +   L+A    +R 
Sbjct: 65  SNHRISHQSINTSAKA--------GQSLQPETEAHDPA---SFWKPISSSLDAFYRFSRP 113

Query: 110 YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI 169
           +  I   +S+ SV  L V+SLS ++P FL G+L+AVVA +FMNI +  LNQ+ D+EIDK+
Sbjct: 114 HTIIGTALSIVSVSLLAVESLSDISPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKV 173

Query: 170 NKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV 225
           NKP LPLASGE S  TG+AI +  A +S  L ++ GSP +  A+    + G AYSV
Sbjct: 174 NKPTLPLASGEYSPATGVAIVSVFAAMSFGLGWVVGSPPLFWALFISFVLGTAYSV 229

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806410|ref|NP_001241496.1| homogentisate phytyltransferase 1, chloroplastic-like [Glycine max] gi|81295666|gb|ABB70126.1| homogentisate phytyltransferase VTE2-1 [Glycine max]

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 1/151 (0%)

Query: 78  QQSEDDNKPAAAP-SFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA 136
           ++S +    A  P S L+ VK  L+A    +R +  I   +S+ SV  L V+ +S ++P 
Sbjct: 76  EKSFESEPQAFDPKSILDSVKNSLDAFYRFSRPHTVIGTALSIISVSLLAVEKISDISPL 135

Query: 137 FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALL 196
           F  GVL+AVVA +FMNI +  LNQ+ DVEIDKINKPYLPLASGE S  TG+ I A  ++L
Sbjct: 136 FFTGVLEAVVAALFMNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFETGVTIVASFSIL 195

Query: 197 SLALAFLSGSPAVLCAVIAWGLTGAAYSVPV 227
           S  L ++ GS  +  A+    + G AYS+ V
Sbjct: 196 SFWLGWVVGSWPLFWALFVSFVLGTAYSINV 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461195|ref|XP_004148327.1| PREDICTED: homogentisate phytyltransferase 1, chloroplastic-like [Cucumis sativus] gi|449522813|ref|XP_004168420.1| PREDICTED: homogentisate phytyltransferase 1, chloroplastic-like [Cucumis sativus]

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 95/148 (64%)

Query: 78  QQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF 137
           Q  E +++  ++ ++ + V+  L+A    +R +  I   +S+ SV  L V+ LS ++P F
Sbjct: 91  QPFETESEALSSKNYGDSVRSFLDAFYRFSRPHTVIGTALSIVSVSLLAVEKLSDLSPLF 150

Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLS 197
           L GVL+A+VA +FMNI +  LNQ+ D+EIDKINKPYLPLASGE S GTG+AI +  +++S
Sbjct: 151 LTGVLEAIVAALFMNIYIVGLNQLFDIEIDKINKPYLPLASGEYSFGTGVAIVSTFSIMS 210

Query: 198 LALAFLSGSPAVLCAVIAWGLTGAAYSV 225
             L ++  S  +  A+    + G AYS+
Sbjct: 211 FWLGWVVRSWPLFWALFVSFILGTAYSI 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169658921|dbj|BAG12674.1| flavonoid prenyltransferase [Sophora flavescens]

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 89/148 (60%)

Query: 78  QQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF 137
           Q  E +++       L  VK  L+     +R YA I   +  TSV FL V+ LS ++ AF
Sbjct: 89  QPFEYEHQAQDPKRILNSVKNALDIFYRFSRPYAAIGAALGATSVSFLAVEKLSDLSLAF 148

Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLS 197
           ++G L+ VVA   MNI  C LNQ+CDVEIDKINKP+LPLASGELS  T + I A S ++S
Sbjct: 149 VIGWLQMVVASFCMNIFNCGLNQLCDVEIDKINKPFLPLASGELSFRTAVLIVASSLIMS 208

Query: 198 LALAFLSGSPAVLCAVIAWGLTGAAYSV 225
             LA++ GS  +  A     + GAAYSV
Sbjct: 209 FWLAWVEGSWPLFWAFSVSSVLGAAYSV 236

Source: Sophora flavescens

Species: Sophora flavescens

Genus: Sophora

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|339759328|dbj|BAK52291.1| genistein 6-dimethylallyltransferase [Sophora flavescens]

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 84/148 (56%)

Query: 78  QQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF 137
           Q  E +     + S  + +K   +A    +R YA I   +  TS+ FL V+ LS ++  F
Sbjct: 89  QTFEYEPHAQHSKSIWDSIKNAFDAFYRFSRPYAAIEAALGATSISFLAVEKLSDLSVVF 148

Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLS 197
            +G+L+ VVA  FMNI  C  NQ+CD+EIDKINKPYLPLASGELS    + I A S +L 
Sbjct: 149 FIGLLQVVVASFFMNIFHCGFNQLCDIEIDKINKPYLPLASGELSFRNSVLIVASSLMLC 208

Query: 198 LALAFLSGSPAVLCAVIAWGLTGAAYSV 225
             LA++ GS  +        +  AAYS+
Sbjct: 209 FGLAWIEGSWPLFWGFFVCAMLTAAYSI 236

Source: Sophora flavescens

Species: Sophora flavescens

Genus: Sophora

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326531796|dbj|BAJ97902.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 94/152 (61%), Gaps = 3/152 (1%)

Query: 74  GHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQV 133
           G +LQ   + +  A   SF + +   L+A    +R +  I   +S+ SV  L V+SLS +
Sbjct: 78  GQSLQPETEAHDTA---SFWKPISSSLDAFYRFSRPHTIIGTALSIVSVSLLAVESLSDI 134

Query: 134 TPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGS 193
           +P FL G+L+AVVA +FMNI +  LNQ+ D+EIDK+NKP LPLASGE S  TG+AI +  
Sbjct: 135 SPMFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVAIVSVF 194

Query: 194 ALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV 225
           A +S  L ++ GSP +  A+    + G AYSV
Sbjct: 195 AAMSFGLGWVVGSPPLFWALFISFVLGTAYSV 226

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.516	0.320	0.412	3.2e-20
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.557	0.331	0.357	1.4e-13
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.385	0.230	0.425	1.4e-12
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.368	0.229	0.326	6.8e-05

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 52/126 (41%), Positives = 73/126 (57%)

Query:   100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLN 159
             L+A    +R +  I  ++S+ SV FL V+ +S ++P    G+L+AVVA + MNI +  LN
Sbjct:    97 LDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLN 156

Query:   160 QICDVEIDKINKPYLPLASGELSMGTGIAICXXXXXXXXXXXXXXXXPAVLCAVIAWGLT 219
             Q+ DVEIDK+NKPYLPLASGE S+ TGIAI                   +  A+    + 
Sbjct:   157 QLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFML 216

Query:   220 GAAYSV 225
             G AYS+
Sbjct:   217 GTAYSI 222

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 183 (69.5 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 50/140 (35%), Positives = 73/140 (52%)

Query:    50 NQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRY 109
             N+   + N +K   K  V  A+ +    Q  E + +     S  + V   L+      R 
Sbjct:    68 NEGGSTSNTSKECEKKYVVNAISE----QSFEYEPQTRDPESIWDSVNDALDIFYKFCRP 123

Query:   110 YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI 169
             YA   I++  T    + V+ LS ++ AF +G L+ VVA I ++I    LNQ+CD+EIDKI
Sbjct:   124 YAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKI 183

Query:   170 NKPYLPLASGELSMGTGIAI 189
             NKP LPLASG+LS    + I
Sbjct:   184 NKPDLPLASGKLSFRNVVII 203

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 174 (66.3 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 40/94 (42%), Positives = 56/94 (59%)

Query:    96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISL 155
             V   L+      R YA  ++++  T    + V+ LS ++ AF +G L+ VVA I ++I  
Sbjct:   107 VNDALDTFYKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFD 166

Query:   156 CSLNQICDVEIDKINKPYLPLASGELSMGTGIAI 189
               LNQ+CD+EIDKINKP LPLASG LS    + I
Sbjct:   167 VGLNQLCDIEIDKINKPDLPLASGNLSFRNVVII 200

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 30/92 (32%), Positives = 48/92 (52%)

Query:   136 AFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICXXXXX 195
             + +L  L  ++A I  N  +  +NQI D+ IDK+NKPYLP+A+G+LS+ +   +      
Sbjct:   135 SLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAI 194

Query:   196 XXXXXXXXXXXPAVLCAVIAWGL-TGAAYSVP 226
                        P +  ++ + GL  G  YSVP
Sbjct:   195 AGLLVVGFNFGPFIT-SLYSLGLFLGTIYSVP 225


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      244       216   0.00088  112 3  11 22  0.48    32
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  166 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.33u 0.12s 20.45t   Elapsed:  00:00:01
  Total cpu time:  20.33u 0.12s 20.45t   Elapsed:  00:00:01
  Start:  Thu May  9 16:48:11 2013   End:  Thu May  9 16:48:12 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	HGGT	SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (445 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00032449001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (502 aa)	•		•			•	•		0.963
	GSVIVG00020095001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (340 aa)						•	•		0.908
	GSVIVG00023813001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (340 aa)						•	•		0.908
	GSVIVG00015688001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (196 aa)						•	•		0.904
	GSVIVG00016328001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (467 aa)			•			•	•		0.855
	GSVIVG00017359001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (466 aa)			•			•	•		0.844
	GSVIVG00027948001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (420 aa)						•	•		0.808
	GSVIVG00019306001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (234 aa)			•						0.432
	GSVIVG00029773001	SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (142 aa)			•						0.427
	GSVIVG00013955001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (345 aa)	•					•	•		0.414

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-39
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	1e-19
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	3e-12
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-11
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	3e-08
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	2e-07
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	2e-06
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	2e-06
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	4e-05
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	5e-05
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	6e-05

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  137 bits (348), Expect = 1e-39
 Identities = 50/109 (45%), Positives = 73/109 (66%)

Query: 117 VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPL 176
           + +TSV  L V+SLS  +P F  G+L+A+V  + MNI +  LNQ+ D+EIDK+NKPYLPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV 225
           ASGE S+ TG+AI    A++S  + ++ GS  +  A+    + G AYS+
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSI 109

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score = 85.4 bits (212), Expect = 1e-19
 Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 129 SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIA 188
           S + +  A L  +L A +A +  N+ +  LNQ+ D+EID+INKP+LPLA+GE S   G  
Sbjct: 43  SSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQR 102

Query: 189 ICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVP 226
           I   + +L+L LA L G P +L  V    L G AYS+P
Sbjct: 103 IVIITGILALILAALLG-PWLLITVGISLLIGTAYSLP 139

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 129 SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI--NKPYLPLASGELSMGTG 186
           +L+      LL +L  ++A + +  +   LN   D EID    NKP  PL SG +S    
Sbjct: 13  ALAAGGVLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREA 72

Query: 187 IAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPV 227
           + +     LL L LA L G   +L  ++   L G  YS P+
Sbjct: 73  LLLGLALLLLGLLLALLLGPLLLLLGLLGLLL-GLLYSPPL 112

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPLASGELSMGTGIAICAGSAL 195
           L  +L A +A      +   +N + D EID+IN      PL SG +S+   + +     L
Sbjct: 46  LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLL 105

Query: 196 LSLALAFLSGSPAVLCAVIAWGLTGAAY 223
           L LALA L    A L   +A  +   AY
Sbjct: 106 LGLALALLLNPLAFL-LSLAALVLALAY 132

Length = 289

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 17/139 (12%)

Query: 97  KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLC 156
           + K+ A   + R    +   ++V     + +  L  +  A LLG L A  A    N    
Sbjct: 1   RTKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP-LDEA-LLGFLTAFFASGSANA--- 55

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
            LN   D E+D+IN+P  P+ SG +S    + +     +L L  A+L    A L  ++  
Sbjct: 56  -LNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS 114

Query: 217 GLTGAAYSVPVSGLILYNI 235
            L            ILYN 
Sbjct: 115 VL-----------GILYNW 122

Length = 279

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIA 215
           +N I D+EIDKINKP  P+ SG +S+           ++ L L+      A L A++ 
Sbjct: 56  INDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLN 113

Length = 279

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG 217
           LN   D E+D IN+PY P+ SG +S+   + + A   +L LA+A+L G P V  A +   
Sbjct: 84  LNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLG-PWVFLAALLGL 142

Query: 218 LTGAAYSVP 226
                YS P
Sbjct: 143 FLAWIYSAP 151

Length = 314

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 13/106 (12%)

Query: 126 PVQSLSQVTPAFLLGVLKAVVAQIFMNISLCS-----LNQICDVEIDKI--NKPYLPLAS 178
           P+ + + + P  LL VL A V   F    L S     +N I DVE D++   K   P+AS
Sbjct: 33  PIFAGNLLNPGALLKVLLAFVL--F---CLASSAVYLVNDIRDVEADRLHPTKRNRPIAS 87

Query: 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYS 224
           G +S+     +     + SLALA+L  SP +   ++ + +   AYS
Sbjct: 88  GVVSVSLAYILAVVLLVASLALAYLL-SPKLALVLLVYLVLNLAYS 132

Length = 295

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 17/70 (24%), Positives = 33/70 (47%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
           S+N   D ++D IN+P  P+ SG +S+           +  L +A + G+  ++   +  
Sbjct: 56  SINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVG 115

Query: 217 GLTGAAYSVP 226
            +    YS+P
Sbjct: 116 IVLAVIYSMP 125

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 141 VLKAVVAQIFMNISLCS-----LNQICDVEIDKIN--KPYLPLASGELSMGTGIAICAGS 193
           +L A++A  F+  SLC+     LN + D+E D+ +  K   P ASG L +  G+A     
Sbjct: 225 LLAALLA--FLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLL 282

Query: 194 ALLSLALAFLSGSPAVLCAVIAWGLTGAAYS 224
            L  LALA     PA L  ++A+     AYS
Sbjct: 283 LLAGLALALA-LGPAFLLVLLAYLALTLAYS 312

Length = 479

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 20/102 (19%)

Query: 136 AFLLGVLKAVVAQ-----------IFMNISL-CS----LNQICDVEIDKINKPYLPLASG 179
           A ++G+L ++VA            IF+ + L CS    +N   D EIDKIN+P  PL  G
Sbjct: 18  AGIVGILGSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG 77

Query: 180 ELSMGTGIAICAGSAL--LSLALAFLSGSPAVLCAVIAWGLT 219
             +M    A+     L  + LALA+L    A L A+ A+ L 
Sbjct: 78  --AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLM 117

Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	99.89
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.88
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.88
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.88
PLN02878	280	homogentisate phytyltransferase	99.88
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.87
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.87
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.87
PRK12882	276	ubiA prenyltransferase; Reviewed	99.87
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.87
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.86
PRK12884	279	ubiA prenyltransferase; Reviewed	99.86
PRK12874	291	ubiA prenyltransferase; Reviewed	99.86
PLN00012	375	chlorophyll synthetase; Provisional	99.85
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.85
PRK08238	479	hypothetical protein; Validated	99.84
PRK12886	291	ubiA prenyltransferase; Reviewed	99.84
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.83
PRK13106	300	ubiA prenyltransferase; Reviewed	99.83
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.83
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.83
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.83
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.83
PRK12895	286	ubiA prenyltransferase; Reviewed	99.82
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.82
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.81
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.81
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.8
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.8
PLN02776	341	prenyltransferase	99.79
PRK12876	300	ubiA prenyltransferase; Reviewed	99.79
PRK12888	284	ubiA prenyltransferase; Reviewed	99.79
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.78
PRK05951	296	ubiA prenyltransferase; Reviewed	99.76
PRK12873	294	ubiA prenyltransferase; Reviewed	99.76
PRK13595	292	ubiA prenyltransferase; Provisional	99.76
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.74
PRK12871	297	ubiA prenyltransferase; Reviewed	99.7
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.7
PRK13592	299	ubiA prenyltransferase; Provisional	99.63
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.54
PLN02922	315	prenyltransferase	99.53
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.52
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.5
PRK12875	282	ubiA prenyltransferase; Reviewed	99.49
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.48
PRK13105	282	ubiA prenyltransferase; Reviewed	99.45
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.44
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.43
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.43
PRK12872	285	ubiA prenyltransferase; Reviewed	99.33
PRK13591	307	ubiA prenyltransferase; Provisional	99.21
KOG4581	359	consensus Predicted membrane protein [Function unk	97.92
PRK13591	307	ubiA prenyltransferase; Provisional	95.89
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	93.86
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	93.76
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	93.45
PRK12872	285	ubiA prenyltransferase; Reviewed	93.41
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	93.12
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	92.53
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	91.96
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	91.73
PLN02922	315	prenyltransferase	91.7
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	91.02
PLN00012	375	chlorophyll synthetase; Provisional	90.85
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	89.93
PRK12888	284	ubiA prenyltransferase; Reviewed	89.93
PRK13106	300	ubiA prenyltransferase; Reviewed	89.55
PRK12886	291	ubiA prenyltransferase; Reviewed	89.48
PRK12871	297	ubiA prenyltransferase; Reviewed	89.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	88.82
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	88.78
PRK12875	282	ubiA prenyltransferase; Reviewed	88.58
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	88.39
PRK13105	282	ubiA prenyltransferase; Reviewed	88.22
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	88.03
PRK12392	331	bacteriochlorophyll c synthase; Provisional	87.24
PRK12884	279	ubiA prenyltransferase; Reviewed	86.92
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	86.61
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	86.46
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	86.16
PRK12882	276	ubiA prenyltransferase; Reviewed	86.03
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	85.92
PRK12874	291	ubiA prenyltransferase; Reviewed	85.5
PRK12895	286	ubiA prenyltransferase; Reviewed	85.39
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	82.82
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	81.62
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	81.46
PRK05951	296	ubiA prenyltransferase; Reviewed	81.23
PRK12873	294	ubiA prenyltransferase; Reviewed	80.93
PRK12876	300	ubiA prenyltransferase; Reviewed	80.1

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=99.89  E-value=1.7e-22  Score=185.49  Aligned_cols=147  Identities=31%  Similarity=0.364  Sum_probs=117.8

Q ss_pred             chhhHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 026038           89 APSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEID  167 (244)
Q Consensus        89 ~~~~~~~~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~-~~~~~l~~lllall~~~l~~~a~~~iND~~D~diD  167 (244)
                      |++.|+...+.+++|+|++|||+.+++.++++.+++++.+.... .....+..++.++++...++.+++++|||+|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            45678888889999999999999999999998888776432221 12212334455556666777777779999999999


Q ss_pred             ccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCC---cCCCcchhhHH
Q 026038          168 KINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV---PVSGLILYNII  236 (244)
Q Consensus       168 rinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv  236 (244)
                      ++|||+||+++|++|+++++.+.+++.++|+++++.+|++.+.++ +.+++++++||.   ++|+..+.+.+
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~~~lg~~Ys~pP~rlKr~~~~~~~  152 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GISLLIGTAYSLPPIRLKRFPLLAAL  152 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcCCchhhcccchhHHH
Confidence            999999999999999999999999999999999999997765554 456788999996   48888887633

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.88  E-value=3.1e-22  Score=181.07  Aligned_cols=134  Identities=17%  Similarity=0.226  Sum_probs=112.7

Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC--CCCcc
Q 026038           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL  176 (244)
Q Consensus        99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrink--p~RPL  176 (244)
                      ++|+|++++||++.....+++++|++++.+.  .+++..   +++++++++++++++|++|||+|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            3689999999999999999999999998532  223322   3556779999999999999999999999987  58999


Q ss_pred             cCCCcCHHHHHHHHHHHHHHHHHHHHH-HcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHH
Q 026038          177 ASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIIN  237 (244)
Q Consensus       177 psG~IS~~~Al~~~i~l~~lgl~la~~-l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~  237 (244)
                      |+|++|++||+.+++++.++|+.++++ +|+....+..++.++++++|+.++||.+++|++=
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v  137 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVI  137 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHH
Confidence            999999999999999999999999887 8876544444556678899999899999998763

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.88  E-value=2.2e-22  Score=181.60  Aligned_cols=132  Identities=22%  Similarity=0.274  Sum_probs=113.1

Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccC
Q 026038           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS  178 (244)
Q Consensus        99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLps  178 (244)
                      ++++|++++||+++...++++++|++++.+.  .+++.   .+++++++++++++++|++|||+|+|+|++|+|+||+|+
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNF--KIDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccC--CcchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            3789999999999999999999999998532  22332   135677899999999999999999999999999999999


Q ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchh-hHH
Q 026038          179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILY-NII  236 (244)
Q Consensus       179 G~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~-~iv  236 (244)
                      |++|+++|+.++.++.++|+++++++|++.+.++++ +++++++|+..+||.... |++
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Ys~~lKr~~~~~~~~  134 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIALL-NSILLYLYAKDLKKTGLIGNLI  134 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHhcCCcHHHHH
Confidence            999999999999999999999999999888777655 455689999878998875 665

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.88  E-value=7.4e-22  Score=179.94  Aligned_cols=135  Identities=15%  Similarity=0.084  Sum_probs=112.8

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC--CCCc
Q 026038           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLP  175 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrink--p~RP  175 (244)
                      +++++|++++||+++....+++++|.+++.+.  .+++..   +++++++++++++++|++|||+|+|+|++|+  |+||
T Consensus         8 ~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~---~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rp   82 (296)
T PRK04375          8 ATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLL---LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRP   82 (296)
T ss_pred             hhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCC
Confidence            56999999999999999999999999998532  233322   3567789999999999999999999999987  5999


Q ss_pred             ccCCCcCHHHHHHHHHHHHHHHHHHHHH-HcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHH
Q 026038          176 LASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIIN  237 (244)
Q Consensus       176 LpsG~IS~~~Al~~~i~l~~lgl~la~~-l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~  237 (244)
                      +|+|++|++||+.+++++.++|++++++ +|+..+.++++..+.+.++|+.++||.+++|++-
T Consensus        83 l~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v  145 (296)
T PRK04375         83 LVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVI  145 (296)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHH
Confidence            9999999999999999999999988755 5766666555444446779998899999988654

>PLN02878 homogentisate phytyltransferase

Probab=99.88  E-value=2.1e-22  Score=182.09  Aligned_cols=115  Identities=44%  Similarity=0.706  Sum_probs=101.8

Q ss_pred             HHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHH
Q 026038          120 TSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLA  199 (244)
Q Consensus       120 l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~  199 (244)
                      +..+++|.+..+++++.++.+++.++++++++|.+..++|||+|+|+||+|||+||+|||++|+++|+.+..++.++|++
T Consensus         4 ~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~   83 (280)
T PLN02878          4 TSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFG   83 (280)
T ss_pred             hHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            34456666655566666777889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhh
Q 026038          200 LAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYN  234 (244)
Q Consensus       200 la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~  234 (244)
                      +++.+|+++++++++.+++++++||..+|++|+.-
T Consensus        84 la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~  118 (280)
T PLN02878         84 MGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKR  118 (280)
T ss_pred             HHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHH
Confidence            99999988888888888789999999888888765

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=8e-22  Score=179.38  Aligned_cols=135  Identities=15%  Similarity=0.182  Sum_probs=121.6

Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CC
Q 026038           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YL  174 (244)
Q Consensus        97 ~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~R  174 (244)
                      ..++|+|++++||+......++++.|+++|..  ...++..   ++.++++..+..++++++|+++|+|+|++|+|  +|
T Consensus        15 ~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~R   89 (304)
T COG0109          15 RSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKR   89 (304)
T ss_pred             HHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCC
Confidence            36799999999999999999999999999974  2334433   46778999999999999999999999999987  89


Q ss_pred             cccCCCcCHHHHHHHHHHHHHHHHHHH-HHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          175 PLASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       175 PLpsG~IS~~~Al~~~i~l~~lgl~la-~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                      |+|+|+|+|+|++.++.++.++|+.+. ++.|+.+.++++++.++++++||.++||....|||
T Consensus        90 P~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~Niv  152 (304)
T COG0109          90 PLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIV  152 (304)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccee
Confidence            999999999999999999999999876 77898888888888899999999999999999986

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.87  E-value=2.5e-21  Score=177.66  Aligned_cols=134  Identities=22%  Similarity=0.311  Sum_probs=111.5

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCc
Q 026038           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP  175 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RP  175 (244)
                      +++++|++++||+++....+++++|++++.+.  .+++..   ++.++++..+.++++|++|||+|+|+|+.|+|  +||
T Consensus        11 ~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RP   85 (306)
T PRK13362         11 ASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRV   85 (306)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCC
Confidence            56899999999999999999999999998432  334432   34566799999999999999999999997653  899


Q ss_pred             ccCCCcCHHHHHHHHHHHHHHHHHHH-HHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          176 LASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       176 LpsG~IS~~~Al~~~i~l~~lgl~la-~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                      +|+|++|+++|+.+++++.++|+.++ ++.|+..+.++.++.+++.++|+.++||.++++.+
T Consensus        86 lpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~  147 (306)
T PRK13362         86 TVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTL  147 (306)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHH
Confidence            99999999999999999999999865 44687665555555556788999889999999876

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.87  E-value=2.3e-21  Score=175.05  Aligned_cols=133  Identities=18%  Similarity=0.185  Sum_probs=110.3

Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC--CCCcccC
Q 026038          101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPLAS  178 (244)
Q Consensus       101 k~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrink--p~RPLps  178 (244)
                      |+|++++||+++....+++++|.+++.+.. .+++..   +++++++++++++++|++|||+|+|+|+.|+  ++||+|+
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            469999999999999999999999985432 233322   3566789999999999999999999999987  5899999


Q ss_pred             CCcCHHHHHHHHHHHHHHHHHH-HHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHH
Q 026038          179 GELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIIN  237 (244)
Q Consensus       179 G~IS~~~Al~~~i~l~~lgl~l-a~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~  237 (244)
                      |++|+++|..+++++.++|+.+ .+++|+..+.++.++.++++++||.++||..++|++=
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v  136 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVI  136 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHH
Confidence            9999999999999999999984 5558877766665544445889998899999988763

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.87  E-value=1.2e-21  Score=176.31  Aligned_cols=132  Identities=24%  Similarity=0.204  Sum_probs=111.7

Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccC
Q 026038           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS  178 (244)
Q Consensus        99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLps  178 (244)
                      ++++|++++||+++..+++++++|++++.+..+  +..   ..++++++.+++++++|++|||+|+|+|++|+|+||+|+
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILS--SPS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hHH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            478999999999999999999999999854321  111   135677899999999999999999999999999999999


Q ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchh-hHH
Q 026038          179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILY-NII  236 (244)
Q Consensus       179 G~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~-~iv  236 (244)
                      |++|++||+.++.++.++|+++++++|+..+.++++ +++++++|+..+|+.... |++
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~-~~~~~~~Yt~~lK~~~~~g~~~  135 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALF-NSLLLVLYAETLKGTPGLGNAS  135 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHhcccchhHHH
Confidence            999999999999999999999999999877666554 455688999889998764 553

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.87  E-value=2.3e-21  Score=174.70  Aligned_cols=132  Identities=22%  Similarity=0.184  Sum_probs=111.0

Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccC
Q 026038           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS  178 (244)
Q Consensus        99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLps  178 (244)
                      ++|+|++++||+++....++++.|++++.+..+.  +.   .+++++++.++.++++|++|||+|+|+|++|+|+||+|+
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            3789999999999999999999999988543221  21   134556788899999999999999999999999999999


Q ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcch-hhHH
Q 026038          179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLIL-YNII  236 (244)
Q Consensus       179 G~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l-~~iv  236 (244)
                      |++|+++++.++.++.++|+++++++|++.+.++++ +.+++++|+.++||... .|++
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~-~~~~~~~Y~~~~k~~~~lg~~~  134 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALG-AYVLMFLYAWKLKPLPFIGNVV  134 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcchhhHH
Confidence            999999999999999999999999999887776654 45679999998899874 6653

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.86  E-value=4e-21  Score=175.59  Aligned_cols=136  Identities=24%  Similarity=0.266  Sum_probs=109.4

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccC--CCCCc
Q 026038           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPYLP  175 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrin--kp~RP  175 (244)
                      +++++|++++||+.|....+.. ++.+++.+.. +..  .+..+++++++.+++.+++|++||++|+|+||+|  ||+||
T Consensus         9 ~~l~~~l~L~RP~~w~~nll~~-~~~~~a~~~~-~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RP   84 (295)
T PRK12324          9 NLLAGYLKLLRPKQWIKNLFVF-AAPIFAGNLL-NPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRP   84 (295)
T ss_pred             HHHHHHHHHhCchHHHHHHHHH-HHHHHHHhhc-ccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCC
Confidence            5689999999999999988754 4445553211 111  1123456667788899999999999999999997  56999


Q ss_pred             ccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHHh
Q 026038          176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINL  238 (244)
Q Consensus       176 LpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~~  238 (244)
                      +|+|++|+++|+.++.++.++|+++++++|+..+.+ +++.+++.++||.++|+..+.|++.+
T Consensus        85 lasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~~lK~~~~~d~l~v  146 (295)
T PRK12324         85 IASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSFKLKHQPVLDVFCI  146 (295)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHhcCCchhhHHHH
Confidence            999999999999999999999999999999776554 35667889999999999999987654

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.86  E-value=6.8e-21  Score=171.35  Aligned_cols=130  Identities=22%  Similarity=0.288  Sum_probs=112.1

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCccc
Q 026038           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA  177 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLp  177 (244)
                      +++++|++++||+++....+++++|.+++.+..+   +.   .+++++++.+++++++|++|||+|+|+|+.|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            4689999999999999999999999999854322   21   13566789999999999999999999999999999999


Q ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhh
Q 026038          178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYN  234 (244)
Q Consensus       178 sG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~  234 (244)
                      +|++|+++++.+++++.++++++++++|+..+.++++ +++++++||.++|+..+.+
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~Ys~~lK~~~~~~  131 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVIL-VSVLGILYNWKLKEYGLIG  131 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhhccccchh
Confidence            9999999999999999999999999999877666554 5667999999899998643

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.86  E-value=7.5e-21  Score=173.33  Aligned_cols=136  Identities=15%  Similarity=0.185  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHhhccc---CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC
Q 026038           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQS---LSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP  172 (244)
Q Consensus        96 ~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~---~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp  172 (244)
                      .++++++|+|++||++.+.+...++.|+++|...   ...+++..   +++++++++++++++|++|||+|+|+|++|+|
T Consensus         4 ~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R   80 (291)
T PRK12874          4 FTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKL---LILGILAAVSARNFAMAFNRLVDRDIDKDNPR   80 (291)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHH---HHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence            4568999999999999999999999999887421   11234432   35677899999999999999999999999985


Q ss_pred             --CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       173 --~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                        +||+|+|++|++||+.+++++.++++++++++|+.++.+++ +.+++..+|+. +||...++.+
T Consensus        81 T~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~-~~~~~~~~Y~~-~KR~t~~~~~  144 (291)
T PRK12874         81 TANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSF-PFLIVLGGYSY-FKRFSSLAHL  144 (291)
T ss_pred             CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh-hcccccccHH
Confidence              89999999999999999999999988888888988877764 45667889995 8998887654

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.85  E-value=2.1e-20  Score=175.87  Aligned_cols=140  Identities=19%  Similarity=0.124  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC
Q 026038           94 EVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA-FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP  172 (244)
Q Consensus        94 ~~~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~-~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp  172 (244)
                      +.+++++|.|++++||++|...+++++.|++.. +.. ++.+. ++..++.+++++.++++++|++|||+|+|+|++|+|
T Consensus        79 ~~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~  156 (375)
T PLN00012         79 AQETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEP  156 (375)
T ss_pred             ccchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCC
Confidence            457788999999999999999999999999853 222 11211 111235567788999999999999999999999999


Q ss_pred             CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHH-------cHHHHHHHHHHHHHHhhhcCC---cCCCcchh-hHH
Q 026038          173 YLPLASGELSMGTGIAICAGSALLSLALAFLS-------GSPAVLCAVIAWGLTGAAYSV---PVSGLILY-NII  236 (244)
Q Consensus       173 ~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l-------~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~-~iv  236 (244)
                      +||+++|++|+++++.++++++++++.+++++       +++.+.+++ ++++++++||.   ++|+.++. +++
T Consensus       157 ~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l-~gi~l~~~YS~pPl~lKr~~~~G~v~  230 (375)
T PLN00012        157 YRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLAL-GGSLLSYIYSAPPLKLKQNGWIGNYA  230 (375)
T ss_pred             CCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHHhhhhcCCchhhhHhccHhHHH
Confidence            99999999999999998888888877777665       333444443 45667999995   78999985 654

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.85  E-value=5.6e-21  Score=172.64  Aligned_cols=136  Identities=15%  Similarity=0.007  Sum_probs=109.3

Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHhhcccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccCC
Q 026038          101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG  179 (244)
Q Consensus       101 k~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~-~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG  179 (244)
                      ++|++++||+++...+++++.|++++...... +++..  .++.+++++.++++++|++|||+|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            46899999999999999999999988322222 33321  1344667999999999999999999999999999999999


Q ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCC---cCCCcch-hhHHHh
Q 026038          180 ELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV---PVSGLIL-YNIINL  238 (244)
Q Consensus       180 ~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~---~LK~l~l-~~iv~~  238 (244)
                      ++|+++++.+++++.+++++++++++.+...+..+.+++.+++||.   ++|+.++ .+++--
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg  141 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVG  141 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHH
Confidence            9999999999999999999999998866623333445667999998   6899984 445433

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK08238 hypothetical protein; Validated

Probab=99.84  E-value=1.3e-20  Score=182.22  Aligned_cols=138  Identities=25%  Similarity=0.282  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccC--CCC
Q 026038           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPY  173 (244)
Q Consensus        96 ~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrin--kp~  173 (244)
                      ...++++|++++|||+|.++++.. ++++++.. ..+  ...+..+++++++..++.+++|++||++|+|+||.|  +++
T Consensus       187 ~~~~~~~~~~l~Rp~q~~kn~l~~-~p~l~a~~-~~~--~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~  262 (479)
T PRK08238        187 RPARLRTWLKALRVHQWAKNLLVF-VPLLAAHQ-FGD--LQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRR  262 (479)
T ss_pred             CchHHHHHHHHhCCcHHHHHHHHH-HHHHHhcc-cCC--hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCC
Confidence            446789999999999999998764 47777632 212  222223567778889999999999999999999999  469


Q ss_pred             CcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHHh
Q 026038          174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINL  238 (244)
Q Consensus       174 RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~~  238 (244)
                      ||+|||++|+++|+.++.+++++|+++++++|+.. ++.+++.+++.++||.++||..+.|++-+
T Consensus       263 RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~-~~~~~~~~~~~~~Ys~~lKr~~~~~~~~l  326 (479)
T PRK08238        263 RPFASGALPIPFGLAAAPLLLLAGLALALALGPAF-LLVLLAYLALTLAYSLRLKRKVLVDVLTL  326 (479)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHhhHHhcCCccccchHH
Confidence            99999999999999999999999999999999754 45556678889999999999999998754

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.84  E-value=2.6e-20  Score=169.77  Aligned_cols=134  Identities=16%  Similarity=0.128  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--C
Q 026038           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y  173 (244)
Q Consensus        96 ~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~  173 (244)
                      +.+++++|+|++||++......+++.|+++|.+..+  ++.   .+++++++.+++++++|++|||+|+|+|++|+|  +
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~--~~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLP--GAS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            346799999999999999998889999999854322  221   135667899999999999999999999999985  8


Q ss_pred             CcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       174 RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                      ||+|+|++|++||+.+.+.+.++++++++++|++.+.++++ ++++.++|+. +||.+.++.+
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~-~~~~~~~Y~~-~Kr~t~~~~~  139 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPP-ALFFLLLYSY-CKRFTALAHV  139 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh-hhccccccHH
Confidence            99999999999999997777777767777889887777654 4555889996 7888887754

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.83  E-value=7.3e-20  Score=168.28  Aligned_cols=141  Identities=21%  Similarity=0.153  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCC
Q 026038           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA-FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL  174 (244)
Q Consensus        96 ~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~-~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~R  174 (244)
                      ..+++++|++++||+++..++++++.|++.+.. . ++... .+..++.+++++.++++++|++|||+|+|+|++|+|+|
T Consensus        23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R  100 (314)
T PRK07566         23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSGA-F-GWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR  100 (314)
T ss_pred             cchHHHHHHHHhCCcchHHHHHHHHHHHHHcCC-C-CcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence            346789999999999999998888888886532 1 22211 11112345577888999999999999999999999999


Q ss_pred             cccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCC---cCCCcch-hhHHHhh
Q 026038          175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV---PVSGLIL-YNIINLI  239 (244)
Q Consensus       175 PLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~---~LK~l~l-~~iv~~~  239 (244)
                      |+++|++|+++++.++.++.++++++++++|++.+.++++ +++++++||.   ++|+.++ .|++--+
T Consensus       101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~-~~~~~~~Yt~gP~~lK~~~~~g~i~vg~  168 (314)
T PRK07566        101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALL-GLFLAWIYSAPPLRLKQNGWLGNYAVGL  168 (314)
T ss_pred             CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH-HHHHHHHhcCCccccccccchhhHHHHH
Confidence            9999999999999999999999999999999777666544 5666899995   7899885 4776543

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.83  E-value=5.8e-20  Score=168.29  Aligned_cols=132  Identities=18%  Similarity=0.272  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--C
Q 026038           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y  173 (244)
Q Consensus        96 ~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~  173 (244)
                      ..+++++|+|++||++.++...++++|+++|.+..+  ++..   +++++++++++++++|++|||+|+|+|++|+|  +
T Consensus        11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~   85 (300)
T PRK13106         11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIST---LILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN   85 (300)
T ss_pred             hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence            446799999999999999999989999999854322  3322   35667899999999999999999999999964  8


Q ss_pred             CcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhh
Q 026038          174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYN  234 (244)
Q Consensus       174 RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~  234 (244)
                      ||+|+|++|++||+.+..++.+.++++++++|+.++.++.+. +++.+.|+. +||.+.+.
T Consensus        86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~-~~~~~~Y~~-~KR~t~~~  144 (300)
T PRK13106         86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIV-ALIAMSYPY-MKRYTAFA  144 (300)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHhH-HhcCCcch
Confidence            999999999999999988888888888888898877776543 455778995 78888775

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.83  E-value=1e-19  Score=164.85  Aligned_cols=134  Identities=20%  Similarity=0.244  Sum_probs=108.5

Q ss_pred             HHHHHHHHHhhchhhHHH---HHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC-
Q 026038           97 KRKLNAISHVTRYYAQIN---IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-  172 (244)
Q Consensus        97 ~~~lk~~l~LtRP~~~~~---~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp-  172 (244)
                      .+++++|++++||+++..   ..+++++|.++|.... .+++.   ..++++++++++++++|++|||+|+|+|+.|+| 
T Consensus         4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt   79 (285)
T PRK12847          4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVART   79 (285)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence            457999999999997765   4577888888885322 13332   235677899999999999999999999997664 


Q ss_pred             -CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       173 -~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                       +||+|+|++|++||+.+++++.++|+++++++|+..+.++++ +++++++|+. .||....+.+
T Consensus        80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~-~~~~~~~Y~~-~Kr~~~~~~~  142 (285)
T PRK12847         80 KNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFI-AVILIVLYPL-MKRFFYWPQL  142 (285)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhccc-cccCCcccHH
Confidence             899999999999999999999999999999899887777655 4556999997 7888776654

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.83  E-value=5.1e-20  Score=166.42  Aligned_cols=130  Identities=16%  Similarity=0.158  Sum_probs=107.5

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC--CCCccc
Q 026038          100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPLA  177 (244)
Q Consensus       100 lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrink--p~RPLp  177 (244)
                      +|+|+|++||++..+..+.+++|+++|.+..  +++..   +++++++++++++++|++|||+|+|+|++|+  |+||+|
T Consensus         2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~--~~~~~---~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~   76 (282)
T TIGR01475         2 FKDILELIKFEHTVFALPFAYAGALLAAKGL--PGLKT---LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV   76 (282)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence            6899999999999999888888999885432  23322   3567789999999999999999999999994  599999


Q ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       178 sG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                      +|++|+++|+.+++++.++++++++++|+.++.++.+ +.+++++|+. +||...++.+
T Consensus        77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~Y~~-~Kr~~~~~~~  133 (282)
T TIGR01475        77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILSPL-VLLVLIIYPY-TKRFTFLCHY  133 (282)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhh-HhccccccHH
Confidence            9999999999999999888888899899887666554 4555889984 7888866544

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.83  E-value=1e-19  Score=167.50  Aligned_cols=137  Identities=18%  Similarity=0.121  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHhh---chhhHHHHHHHHHHHHHhhcccC---CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 026038           95 VVKRKLNAISHVT---RYYAQINIIVSVTSVCFLPVQSL---SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDK  168 (244)
Q Consensus        95 ~~~~~lk~~l~Lt---RP~~~~~~il~~l~G~~lA~~~~---~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDr  168 (244)
                      .+..++++|++++   ||++.....+++++|.++|.+..   ..+++.   .+++++++++++++++|++|||+|+|+|+
T Consensus        25 ~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~  101 (314)
T PRK12878         25 RLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDIDA  101 (314)
T ss_pred             hcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3567899999999   99999999999999999986421   123332   24567789999999999999999999998


Q ss_pred             cCCC--CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          169 INKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       169 inkp--~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                      .|+|  +||+|+|++|++||+.++.++.++|+++.+.+|++.+.++++ +++++++|+. +||.+.++.+
T Consensus       102 ~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~-~~~~~~~Y~~-~KR~t~~~~~  169 (314)
T PRK12878        102 KVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIA-SLAIVAAYPF-MKRITWWPQF  169 (314)
T ss_pred             CCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH-HHhcCCcchH
Confidence            7764  899999999999999999999999999988888877666654 4666999985 7887776643

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.83  E-value=5.5e-20  Score=167.47  Aligned_cols=132  Identities=20%  Similarity=0.236  Sum_probs=107.0

Q ss_pred             HHHHHHHHhhchhhHHHHH---HHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC-C-
Q 026038           98 RKLNAISHVTRYYAQINII---VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK-P-  172 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~i---l~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrink-p-  172 (244)
                      +++++|++++||++..++.   +++++|.++|.+..  .++..   +++++++++++++++|++|||+|+|+|+.|+ + 
T Consensus         7 ~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~--~~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~   81 (290)
T PRK12870          7 PTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGL--PPLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVERTR   81 (290)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCccc
Confidence            5789999999999876665   67788888885432  23322   3566789999999999999999999998655 4 


Q ss_pred             CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       173 ~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                      +||+|+|++|++||+.+++++.++++.+++++|+..+.++++ ++++.++|+. .||.+.++.+
T Consensus        82 ~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Y~~-~KR~t~~~~~  143 (290)
T PRK12870         82 FRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVA-AVPVIFLYPL-AKRVFPVPQL  143 (290)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhhh-hhhcccccee
Confidence            899999999999999999999999999999999888777654 4557889996 6777766543

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.82  E-value=1e-19  Score=165.64  Aligned_cols=130  Identities=15%  Similarity=0.111  Sum_probs=106.3

Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCcc
Q 026038           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPL  176 (244)
Q Consensus        99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RPL  176 (244)
                      ++++|+|++||++.+.....+++|+++|.+..  .++..   +++.+++++++++++|++||++|+|+|++|+|  +||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~--~~~~~---l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHY--IHPIK---ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            47899999999999999999999999985322  22211   34556788999999999999999999999965  9999


Q ss_pred             cCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhH
Q 026038          177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNI  235 (244)
Q Consensus       177 psG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~i  235 (244)
                      |+|++|++||+.+.+++.++++++++++|+.++.++.+ .+.+. +|.-.+||...++-
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~-~~~l~-~~yp~~KR~t~~~~  133 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPI-VIFLF-IIDPFLKRYTAWRH  133 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHH-HHHHHHHhCccccH
Confidence            99999999999999999999999999999888776654 34434 44445799988773

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.82  E-value=2.1e-19  Score=162.72  Aligned_cols=132  Identities=17%  Similarity=0.199  Sum_probs=103.9

Q ss_pred             HHHHHHHHhhchhhHHHH---HHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--
Q 026038           98 RKLNAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--  172 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~---il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--  172 (244)
                      +++++|++++|++++...   .+++++|.++|.+..+  ++..   +++++++.+++++++|++|||+|+|+|+.|+|  
T Consensus         3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~~~~---~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~   77 (282)
T PRK12848          3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--DLWV---LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK   77 (282)
T ss_pred             hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence            468999999987665444   4567788888754322  2221   35566788999999999999999999997664  


Q ss_pred             CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       173 ~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                      +||+|+|++|+++|+.+++++.++++++++.+|+..+.++++ +.++.++|+. .||.+.++.+
T Consensus        78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Y~~-~Kr~~~~~~~  139 (282)
T PRK12848         78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVA-ALALAWIYPF-MKRYTHLPQV  139 (282)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHh-HHhcCcccHH
Confidence            899999999999999999999999999999999887776654 4555889984 6777766644

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.81  E-value=5e-19  Score=162.23  Aligned_cols=137  Identities=18%  Similarity=0.134  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHH---HHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC
Q 026038           95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF---LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK  171 (244)
Q Consensus        95 ~~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~---l~~lllall~~~l~~~a~~~iND~~D~diDrink  171 (244)
                      .+.+++|.|++++||+++...+++++.|++.+.    .+++..   +..++.+++++.++++++|.+|||+|+|+|+.|+
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~   86 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAASG----NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE   86 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHHHHcC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence            445778999999999999999999999988642    222211   1123445578899999999999999999999999


Q ss_pred             CCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHc-------HHHHHHHHHHHHHHhhhcCC---cCCCcch-hhHH
Q 026038          172 PYLPLASGELSMGTGIAICAGSALLSLALAFLSG-------SPAVLCAVIAWGLTGAAYSV---PVSGLIL-YNII  236 (244)
Q Consensus       172 p~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~-------~~~~ll~ll~~~~l~~~YS~---~LK~l~l-~~iv  236 (244)
                      |+||+++|++|+++++.+++++.++++++++++.       ++.+.+++ .+++.+++||.   ++|+.++ .+++
T Consensus        87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~-~~~~~~~~Yt~gP~~lk~~g~~G~i~  161 (306)
T TIGR02056        87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLAL-FGSFIAFIYSAPPLKLKQNGWLGNFA  161 (306)
T ss_pred             CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHHHHHcCChhhhhhcccHHHHH
Confidence            9999999999999999999999999998887763       34444444 45667999995   7888874 3553

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.81  E-value=7.3e-19  Score=159.42  Aligned_cols=133  Identities=25%  Similarity=0.267  Sum_probs=106.4

Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCcc
Q 026038           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPL  176 (244)
Q Consensus        99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RPL  176 (244)
                      .++.++++.||..+.....+.++|..++....+.     +..+++++++++++++++|++||++|+|+||+|+|  +||+
T Consensus        12 ~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl   86 (289)
T COG0382          12 ALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPL   86 (289)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCC
Confidence            3455555666666666666677777776522221     22356778899999999999999999999999999  9999


Q ss_pred             cCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHHh
Q 026038          177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINL  238 (244)
Q Consensus       177 psG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~~  238 (244)
                      |+|++|+++|+.+.+++.++++++++.+|++++.+. +.++++.++| ..+||....+.+-+
T Consensus        87 ~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y-~~~Kr~~~~~~~~l  146 (289)
T COG0382          87 PSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAY-PFLKRFTFLPQLVL  146 (289)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH-HHhhcCCchHHHHH
Confidence            999999999999999999999999999998876665 4567789999 67899988876543

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.80  E-value=9e-19  Score=162.41  Aligned_cols=135  Identities=19%  Similarity=0.183  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCC
Q 026038           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSL-SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL  174 (244)
Q Consensus        96 ~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~-~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~R  174 (244)
                      ..+++|+|++++||++++ ..+++++|.++|.+.. +.+....+ .+..+++.+.+..+++|++|||+|+|+|++|+|.|
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            346799999999999998 6666677777875321 22221111 12233344556678899999999999999999999


Q ss_pred             cccCCCcCHHHHHHHHHHHHHHHHHHHHHHcH-------HHHHHHHHHHHHHhhhcCC---cCCCcch
Q 026038          175 PLASGELSMGTGIAICAGSALLSLALAFLSGS-------PAVLCAVIAWGLTGAAYSV---PVSGLIL  232 (244)
Q Consensus       175 PLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~-------~~~ll~ll~~~~l~~~YS~---~LK~l~l  232 (244)
                      |+++|++|+++++.+.+++.+++++++++++.       +.+++..+.+++++++||.   ++||..+
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~  153 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNIL  153 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccch
Confidence            99999999999999999999999988887653       2233333456778999998   3677554

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.80  E-value=1.1e-18  Score=158.96  Aligned_cols=134  Identities=16%  Similarity=0.176  Sum_probs=104.3

Q ss_pred             HHHHHHHHhhchhhHHHHHHH---HHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--
Q 026038           98 RKLNAISHVTRYYAQINIIVS---VTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--  172 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~---~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--  172 (244)
                      +++++|+|++|.+...++.+.   ..+|.+++....+..++..   +++.+++++++++++|++||++|+|+|++|+|  
T Consensus         4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~   80 (289)
T PLN02809          4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVERTK   80 (289)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence            468999999999887666443   4455555531111122321   35667899999999999999999999998753  


Q ss_pred             CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       173 ~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                      +||+|+|++|++||+.+..++.++++++++.+|+..+.++++ +++++++|+. +||.+.++.+
T Consensus        81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~Y~~-~KR~t~~~~~  142 (289)
T PLN02809         81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGAS-SLLLVFTYPL-MKRFTFWPQA  142 (289)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhH-HHhcCcchHH
Confidence            999999999999999999999999999999999887776654 4666889996 7888876654

>PLN02776 prenyltransferase

Probab=99.79  E-value=7.8e-19  Score=163.17  Aligned_cols=125  Identities=17%  Similarity=0.119  Sum_probs=104.8

Q ss_pred             hhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCcccCCCcCH
Q 026038          106 VTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPLASGELSM  183 (244)
Q Consensus       106 LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RPLpsG~IS~  183 (244)
                      ++||+.....+++++.|+++|.+...  ++.   .+++++++++++.+++|++||++|+|+|++|+|  +||+|+|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            57999999999999999999854322  332   235667899999999999999999999998775  99999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          184 GTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       184 ~~Al~~~i~l~~lgl~l-a~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                      ++|+.+++++.++|+.+ ++++|+.++.++.+..+++.+.|+. +||...+|++
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~-lKR~t~~~~~  128 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP-LKQIHPANTW  128 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-HccCCchhHH
Confidence            99999999999999954 6678988877776656667889995 9999999964

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.79  E-value=1.7e-18  Score=158.54  Aligned_cols=134  Identities=16%  Similarity=0.095  Sum_probs=109.7

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHhhcc---c-CC---CCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccC
Q 026038           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQ---S-LS---QVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN  170 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~---~-~~---~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrin  170 (244)
                      ++++.|.++.|.++.+....-++.|+.+|..   . .+   ..++.   .+++..++++++++++|++|||+|+|+|++|
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~   78 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIK---TISLGGSAFFCARTVGIIVNQIIDCAIDKKN   78 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence            3589999999999888887777888988841   1 11   11232   2456678999999999999999999999999


Q ss_pred             CC--CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          171 KP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       171 kp--~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                      +|  +||+|+|++|++||+.+++++.++++++++++|+.++.++.+. +++.++|+. +||.+.++.+
T Consensus        79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~-~~~~~iY~~-~KR~t~~~~~  144 (300)
T PRK12876         79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLS-TLLMIIYPY-TKRVTFLCHW  144 (300)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHh-HhcCCchhHH
Confidence            96  9999999999999999999888888888899999888877654 555689997 8999988754

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.79  E-value=1.3e-18  Score=158.08  Aligned_cols=131  Identities=18%  Similarity=0.043  Sum_probs=103.3

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCcc
Q 026038          100 LNAISHVTRYYAQINIIVSVTSVCFLPVQ-SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPL  176 (244)
Q Consensus       100 lk~~l~LtRP~~~~~~il~~l~G~~lA~~-~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RPL  176 (244)
                      +++|+|++||++.+.....++.+++.+.. ..+.+++..   +++.+++++++++++|++|||+|+|+|++|+|  +||+
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL   78 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWAD---LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL   78 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence            68999999999999887776666666531 111233322   35667899999999999999999999999984  8999


Q ss_pred             cCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhH
Q 026038          177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNI  235 (244)
Q Consensus       177 psG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~i  235 (244)
                      |+|++|++||+.+++++.++++++++.+|+.++.++.+ ++++.++|+. .||.+.++.
T Consensus        79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~-~~~~~~~Y~~-~Kr~t~~~~  135 (284)
T PRK12888         79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPL-AVAPLVVYPY-AKRFTNFPH  135 (284)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH-hhcccchhh
Confidence            99999999999999999888888888889887766654 3445778874 577776553

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.78  E-value=3e-18  Score=155.26  Aligned_cols=131  Identities=18%  Similarity=0.177  Sum_probs=100.6

Q ss_pred             HHHHHhhch---hhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCc
Q 026038          101 NAISHVTRY---YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP  175 (244)
Q Consensus       101 k~~l~LtRP---~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RP  175 (244)
                      ++|.+++|+   ..+....++.++|.++|....+..++..   +++.+++++++++++|++|||+|+|+|+.|+|  +||
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   78 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP   78 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence            345555555   5555556777888888843111112321   35566788999999999999999999997654  899


Q ss_pred             ccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       176 LpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                      +|+|++|++||+.++.++.++|+++++.+|+..+.++++ ++++.++|+. +||...++.+
T Consensus        79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Y~~-~Kr~~~~~~~  137 (281)
T TIGR01474        79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVA-SLALVATYPF-MKRITYWPQL  137 (281)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHhch-hcccccccHH
Confidence            999999999999999999999999999999887777654 4666999995 7888877754

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.76  E-value=1.1e-17  Score=152.67  Aligned_cols=140  Identities=14%  Similarity=0.078  Sum_probs=108.9

Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccccCC---CC
Q 026038           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINK---PY  173 (244)
Q Consensus        99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDrink---p~  173 (244)
                      ++|.|++.+||+++..++++++.|.+++.....++++..   .++++++++++++++|.+|||+|++  .|+.++   ++
T Consensus         3 ~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~   79 (296)
T PRK05951          3 NAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQ   79 (296)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCC
Confidence            589999999999999999999999999865434566643   3677789999999999999999955  555432   67


Q ss_pred             CcccCCCcCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHHhhhcCC---cCCCcchhhHHHhhhcc
Q 026038          174 LPLASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSV---PVSGLILYNIINLIKHN  242 (244)
Q Consensus       174 RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l----~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv~~~~~~  242 (244)
                      ||+++|++|++|++.++.++.++++.++..+    +++.+.++ +.+++.++.||.   ++|+.++.++.-.+-+|
T Consensus        80 r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g  154 (296)
T PRK05951         80 HPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWS  154 (296)
T ss_pred             CccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHcCCCcccCCCCchHHHHHHHHH
Confidence            9999999999999999999888877654443    54444444 456778999976   37777777766554443

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.76  E-value=6e-18  Score=154.61  Aligned_cols=132  Identities=17%  Similarity=0.151  Sum_probs=103.8

Q ss_pred             HHHHHHHHhhchhhHHHH---HHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--
Q 026038           98 RKLNAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--  172 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~---il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--  172 (244)
                      +++++|++++||+.+.++   .++.++|.+++.+..  .++.   .++++++++.++.+++|++||++|+|+|+.|+|  
T Consensus         5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~--~~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~   79 (294)
T PRK12873          5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAP--PSLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK   79 (294)
T ss_pred             HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCC--CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence            358899999888777666   455567777764321  2222   245777899999999999999999999998875  


Q ss_pred             CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          173 YLPLASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       173 ~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l----~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                      +||+|+|++|++||+.++.++.++++++.+.+    |+.++.++++ ++++.++|+. +||...++.+
T Consensus        80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~-~~~~~~~Y~~-~KR~t~~~~~  145 (294)
T PRK12873         80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFL-ALPPILIYPS-AKRWFAYPQA  145 (294)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-HHHHHHHHHH-HHhccccchH
Confidence            99999999999999999999999999887765    5566666654 4556889996 7998888754

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.76  E-value=2e-17  Score=150.93  Aligned_cols=138  Identities=18%  Similarity=0.158  Sum_probs=104.0

Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCCh--HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCC
Q 026038           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTP--AFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL  174 (244)
Q Consensus        97 ~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~--~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~R  174 (244)
                      ...++.+++++||.+|+.+..++++|++.+.+   .+++  ..   ++++++..+.++.+.|++|||+|+|+|++|+|+|
T Consensus         9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~   82 (292)
T PRK13595          9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGH---LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKG   82 (292)
T ss_pred             hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC---cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCC
Confidence            35678899999999999999999999988743   2343  22   2455677889999999999999999999999999


Q ss_pred             cccCCCcCHHHHHHHHHHHHHH----HHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHHhhhc
Q 026038          175 PLASGELSMGTGIAICAGSALL----SLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINLIKH  241 (244)
Q Consensus       175 PLpsG~IS~~~Al~~~i~l~~l----gl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~~~~~  241 (244)
                      |+++|++|+++++.+..++.++    ++++++.++++.+.+.. .+++++++||.+=+|++-....|-++|
T Consensus        83 ~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~-v~~~l~~~YS~pPlRlK~rp~l~~l~~  152 (292)
T PRK13595         83 GWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLL-LYAALFVGYSLPPLRFKARPFLDGLSN  152 (292)
T ss_pred             CCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHccCccchhcCcchhHHHH
Confidence            9999999999999976665555    45567777877655544 556789999964333333333333333

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.74  E-value=4.4e-17  Score=147.69  Aligned_cols=134  Identities=16%  Similarity=0.058  Sum_probs=103.9

Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--ccccc--CCCCC
Q 026038           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDKI--NKPYL  174 (244)
Q Consensus        99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~--diDri--nkp~R  174 (244)
                      .+++|++++||+++..+++++++|.+++... ..+++..   .++++++++++++++|.+|||+|+  ++|+.  ++|+|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence            3689999999999999999999999998532 3455432   356778999999999999999999  57854  55799


Q ss_pred             cccCCCcCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHHhhhcCCc---CCCcchhhHHH
Q 026038          175 PLASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSVP---VSGLILYNIIN  237 (244)
Q Consensus       175 PLpsG~IS~~~Al~~~i~l~~lgl~la~~l----~~~~~ll~ll~~~~l~~~YS~~---LK~l~l~~iv~  237 (244)
                      |+++|++|+++++.++.++.+++++++..+    +++.+.++ +.+++.+++||.+   +|+.++.+++-
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Ys~~p~~~~~~glge~~~  146 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLG-LLCIAAAILYTGGPKPYGYTGLGELFV  146 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhhhhcCCCCccCCCCcHHHHH
Confidence            999999999999999999988877666554    54444444 3456678999985   34555666554

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.70  E-value=2.2e-16  Score=144.54  Aligned_cols=126  Identities=21%  Similarity=0.157  Sum_probs=91.0

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccC-------
Q 026038           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN-------  170 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrin-------  170 (244)
                      +++++|++++||++......++++|.++|....+.+++..   ++++++++.++..++|++|||+|+|+|+.|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            3589999999999888887777788888731112334432   222334455555777999999999999875       


Q ss_pred             --C--CCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHH---HHHHHHHHHHHHhhhcCCc
Q 026038          171 --K--PYLPLASGELSMGTGIAICAGSALLSLALAFLSGSP---AVLCAVIAWGLTGAAYSVP  226 (244)
Q Consensus       171 --k--p~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~---~~ll~ll~~~~l~~~YS~~  226 (244)
                        |  ++||+++|++|+++++.+++++.++|+++++.++..   ..++..+.+.++++.|+.+
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~  142 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQVK  142 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              3  389999999999999999999999999887776532   1222223455667888873

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.70  E-value=1.9e-16  Score=146.01  Aligned_cols=133  Identities=12%  Similarity=0.066  Sum_probs=108.4

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC----CCCc
Q 026038          100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK----PYLP  175 (244)
Q Consensus       100 lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrink----p~RP  175 (244)
                      +|.|++++||++...++++++.|.++|......+++..   .++++++++++++++|.+|||+|++.|+-++    +.|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            68899999999999999999999999864334566643   3566788899999999999999998654443    5799


Q ss_pred             ccCCCcCHHHHHHHHHHHHHHHHHHH----HHHcHHHHHHHHHHHHHHhhhcCC---cCCCcchhhHH
Q 026038          176 LASGELSMGTGIAICAGSALLSLALA----FLSGSPAVLCAVIAWGLTGAAYSV---PVSGLILYNII  236 (244)
Q Consensus       176 LpsG~IS~~~Al~~~i~l~~lgl~la----~~l~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv  236 (244)
                      +++|.+|+++++..+.++++++++++    +..|++.+.++ +.+++.+++||.   ++|+.++.++.
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~ig-l~g~~~~~~Yt~gP~~l~y~gLGe~~  146 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIG-LICFAIGILYTGGPLPLSRMPLGEIF  146 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH-HHHHHHhhhhcCCCcccccCccHHHH
Confidence            99999999999999999999988744    44565554444 456778999998   79999999886

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.63  E-value=3.1e-15  Score=136.58  Aligned_cols=96  Identities=20%  Similarity=0.102  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHH
Q 026038          140 GVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLT  219 (244)
Q Consensus       140 ~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l  219 (244)
                      ..+++.+.+++..+++|++|||+|+|+|++|+|+||+|||++|+++|+.+++.+.++++.++...     .... ...+.
T Consensus        47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i-~~~~i  120 (299)
T PRK13592         47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNV-GWFLF  120 (299)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHH
Confidence            34666777889999999999999999999999999999999999999999999977777766555     1111 12223


Q ss_pred             hhhc-----CCcCCCcchhh--HHHhhhc
Q 026038          220 GAAY-----SVPVSGLILYN--IINLIKH  241 (244)
Q Consensus       220 ~~~Y-----S~~LK~l~l~~--iv~~~~~  241 (244)
                      .++|     +..+|+.++..  +|-.++|
T Consensus       121 ~~lY~~lm~a~~~K~~~l~gNl~Va~ltg  149 (299)
T PRK13592        121 LYIYGTLMSFWFFKRDKIQNSLPLALVTH  149 (299)
T ss_pred             HHHHHHHHHHHHHcccCCCcchhhhhhcc
Confidence            4455     77788887764  3444444

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.54  E-value=1.2e-13  Score=125.68  Aligned_cols=128  Identities=15%  Similarity=0.017  Sum_probs=99.5

Q ss_pred             chhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccccC--CCCCcccCCCcCH
Q 026038          108 RYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKIN--KPYLPLASGELSM  183 (244)
Q Consensus       108 RP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDrin--kp~RPLpsG~IS~  183 (244)
                      ||+++..++++++.|.++|.... .+++..   .++++++++++++++|.+|||+|++  .|+.+  .|+|++++|.+|+
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            89999999999999999996432 666643   3677789999999999999999996  46543  4689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----cH-----HHHHHHHHHHHHHhhhcCC---cCCCcchhhHHHhh
Q 026038          184 GTGIAICAGSALLSLALAFLS----GS-----PAVLCAVIAWGLTGAAYSV---PVSGLILYNIINLI  239 (244)
Q Consensus       184 ~~Al~~~i~l~~lgl~la~~l----~~-----~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv~~~  239 (244)
                      ++++..++++++++++++.++    ++     +.+++..+.+++.+++||.   ++++.++.+++-.+
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i  144 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLV  144 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHH
Confidence            999999999988877665554    32     1333333456778999997   57777777775443

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PLN02922 prenyltransferase

Probab=99.53  E-value=1.9e-13  Score=126.15  Aligned_cols=135  Identities=16%  Similarity=0.044  Sum_probs=101.2

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccccCCCCCc
Q 026038           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLP  175 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDrinkp~RP  175 (244)
                      ++++.|++.+||++...+++++++|.++|......+++..   .++++++++++++++|.+|||+|++  .|+.++..+.
T Consensus        13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~   89 (315)
T PLN02922         13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV   89 (315)
T ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence            4588999999999999999999999999965434677643   3677899999999999999999987  7885443222


Q ss_pred             ccCCCcCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHHhhhcCC---cCCCcchhhHHH
Q 026038          176 LASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSV---PVSGLILYNIIN  237 (244)
Q Consensus       176 LpsG~IS~~~Al~~~i~l~~lgl~la~~l----~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv~  237 (244)
                      -..|  |+++++..+++++++++...+.+    +.|.+++..+.+++.+++||.   ++++.++.++.-
T Consensus        90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v  156 (315)
T PLN02922         90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGLGEPLC  156 (315)
T ss_pred             Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccccCcchHHHH
Confidence            2234  99999999988888877433332    223334334567888999986   588888877654

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.52  E-value=1.6e-13  Score=126.19  Aligned_cols=136  Identities=11%  Similarity=-0.047  Sum_probs=106.1

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccccCCCCCc
Q 026038           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLP  175 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDrinkp~RP  175 (244)
                      ++++.|++.+||+++..+++++++|.++|......+++..   .++++++++++++++|.+|||+|++  .|+. ++ ..
T Consensus        10 ~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~-~~   84 (304)
T PRK07419         10 SRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KF-HS   84 (304)
T ss_pred             cHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-cc-cC
Confidence            5689999999999999999999999999864334677643   3677889999999999999999998  7884 22 23


Q ss_pred             ccCCCcCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHHhhhcCC---cCCCcchhhHHHhh
Q 026038          176 LASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSV---PVSGLILYNIINLI  239 (244)
Q Consensus       176 LpsG~IS~~~Al~~~i~l~~lgl~la~~l----~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv~~~  239 (244)
                      .+++..+++++...+.++++++++++.++    +++.+.++ +.+++.+++||.   ++|+.++.+++-.+
T Consensus        85 ~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~~~~~~YT~gP~~l~y~gLGE~~v~l  154 (304)
T PRK07419         85 VVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCCFLGYLYQGPPFRLGYQGLGEPLCFL  154 (304)
T ss_pred             cccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhheccCCCcccCCCCchHHHHHH
Confidence            45666689999999999988887765543    54444444 457888999986   58888888886544

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.50  E-value=9.2e-14  Score=121.52  Aligned_cols=121  Identities=26%  Similarity=0.269  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc--CCCCCcccCCCcCHHHHHHHHH
Q 026038          114 NIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI--NKPYLPLASGELSMGTGIAICA  191 (244)
Q Consensus       114 ~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDri--nkp~RPLpsG~IS~~~Al~~~i  191 (244)
                      ..+.++++|.+++...  ..++..   ...+++++++++.++|.+||++|+|+|+.  |+|+||+++|+++++++..++.
T Consensus         3 ~~~~~~l~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~   77 (257)
T PF01040_consen    3 LSFLPVLAGLALASGG--PFNWPI---FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFAL   77 (257)
T ss_pred             HHHHHHHHHHHHHHcC--CCCHHH---HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHH
Confidence            3455666665444322  223322   24555677799999999999999999999  8899999999999999999999


Q ss_pred             HHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCC--cCCCcch-hhHHHhhh
Q 026038          192 GSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV--PVSGLIL-YNIINLIK  240 (244)
Q Consensus       192 ~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~--~LK~l~l-~~iv~~~~  240 (244)
                      ++.++++++++..+++.+.+.++ +.+.+++||.  ++|+.++ .+++.-+-
T Consensus        78 ~~~~l~l~l~~~~~~~~~~~~~~-~~~~~~~Ys~~~~lk~~~~~~~~~~~~~  128 (257)
T PF01040_consen   78 ILLLLGLLLALLLGPWFLLILLL-GFLLGLLYSPPLRLKRRPLWGELVVALV  128 (257)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHH-HHHHHHHHhhhhhhcceeccchhhHHHh
Confidence            99999999998888777666544 4556799995  6888888 66555443

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.49  E-value=7.6e-13  Score=120.47  Aligned_cols=132  Identities=18%  Similarity=0.185  Sum_probs=81.1

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCc-
Q 026038           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLP-  175 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~-~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RP-  175 (244)
                      ++++.++++.||++|..++.++++|.++|.+..+. +++.++  .+++. ..+..+...|++|||+|+|+|+.|++++. 
T Consensus         6 ~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~--~ll~~-~~i~~Nl~~y~iND~~D~D~Dr~~prk~~~   82 (282)
T PRK12875          6 DRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAV--ALFAY-FLFPANVFLYGVNDVFDADTDELNPKKDRE   82 (282)
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHH--HHHHH-HHHHHHHHHhcchhhhhhhccccCCCccCC
Confidence            57899999999999999999999999999653322 344221  11111 11334556678999999999999987543 


Q ss_pred             --ccCCCcCHHHHHHHH-HHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcC---CcCCCcchhhHH
Q 026038          176 --LASGELSMGTGIAIC-AGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYS---VPVSGLILYNII  236 (244)
Q Consensus       176 --LpsG~IS~~~Al~~~-i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS---~~LK~l~l~~iv  236 (244)
                        ++   .+.+.+.... ....++++.+.+..++.... .+++.++++++||   .++|+..+.|++
T Consensus        83 r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~-~ll~~i~~~~~YS~pP~rlk~~p~~~~~  145 (282)
T PRK12875         83 REVR---YRGDRRVLVAVALSGALALAFLLVLPPAAWP-ALLAFLVLSVEYSAPPLRFKTTPVLDSL  145 (282)
T ss_pred             CCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHcCCCccchhccHHHHH
Confidence              33   1112222221 11233344444444443322 3345678899999   456777776653

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.48  E-value=6.4e-15  Score=134.99  Aligned_cols=131  Identities=15%  Similarity=0.140  Sum_probs=110.7

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCc
Q 026038           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP  175 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RP  175 (244)
                      ..++.|+|++||+.....+++...|+++|.+.   +++.-   ++...+|+.+..+++|++||+++...|..|+|  .||
T Consensus        92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~~---l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp  165 (409)
T KOG1380|consen   92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFPT---LLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP  165 (409)
T ss_pred             chHHHHHHhcccceEEEEeeeccccccccccC---CCcch---hHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence            45689999999998888888888999999764   33322   35667899999999999999999999999887  899


Q ss_pred             ccCCCcCHHHHHHHHHHHHHHHHHHHHH-HcHHHHHHHHHHHHHHhhhcCCcCCCcchhhH
Q 026038          176 LASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPVSGLILYNI  235 (244)
Q Consensus       176 LpsG~IS~~~Al~~~i~l~~lgl~la~~-l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~i  235 (244)
                      +|+|+|||.+|+.|+.+....|+.+.++ .|+....++..-.+++.++|+ |+||+.+.|.
T Consensus       166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT-PlKrihiinT  225 (409)
T KOG1380|consen  166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT-PLKRIHIINT  225 (409)
T ss_pred             cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc-chhhhhhhhh
Confidence            9999999999999999999999866544 888887887777788888998 7899887763

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.45  E-value=1.7e-12  Score=118.28  Aligned_cols=130  Identities=15%  Similarity=0.089  Sum_probs=86.6

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccCC
Q 026038          100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG  179 (244)
Q Consensus       100 lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG  179 (244)
                      ++.+++++||++|+.+.++...|+++|.+ .+  ++.+   ++.++......+.+.|++|||+|+|.|+.|++++.. .|
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~-~~--~~~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g   73 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLAGG-EI--DWLF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG   73 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHHCC-CC--ChHH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence            36789999999999999999889999932 22  2322   122222344444455677999999999999874332 58


Q ss_pred             CcCHHHHHHHHHHHHHH-----HHHHHHHHcHHHHHHHHHHHHHHhhhcCC---cCCCcchhhHHH
Q 026038          180 ELSMGTGIAICAGSALL-----SLALAFLSGSPAVLCAVIAWGLTGAAYSV---PVSGLILYNIIN  237 (244)
Q Consensus       180 ~IS~~~Al~~~i~l~~l-----gl~la~~l~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv~  237 (244)
                      .++++|+......+.++     ++.+.+..+++.+.++ ..+++.++.||.   ++|+.++.|+..
T Consensus        74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS~~p~rlk~~gl~d~~t  138 (282)
T PRK13105         74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYSAPGLRFKERPFLDSLT  138 (282)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhcCCCccccccchHHHHH
Confidence            89999984443333333     2223333354444443 456788999998   588888888843

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.44  E-value=6.8e-14  Score=125.81  Aligned_cols=135  Identities=16%  Similarity=0.204  Sum_probs=103.3

Q ss_pred             HHHHHHHHHhhchhhHHHHHH---HHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC-
Q 026038           97 KRKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-  172 (244)
Q Consensus        97 ~~~lk~~l~LtRP~~~~~~il---~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp-  172 (244)
                      ..+++.|.+++|.+..+++.+   +..+..+++...  ...+. +.-+.++=+++++|++++|+|||++|+|+|+..+| 
T Consensus        61 p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda--g~~p~-~~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRt  137 (353)
T KOG1381|consen   61 PKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA--GLLPS-IKMLALFGVGALLMRGAGCTINDLWDKDLDAKVERT  137 (353)
T ss_pred             CccchhHHHHHhcCCCceeeeeecchHHHHHhccCC--Cccch-hHHHHHhcccHHHhccCCceehhhhhhhhhhhHhhh
Confidence            356999999999988887743   334556666432  11121 11123334689999999999999999999997765 


Q ss_pred             -CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038          173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII  236 (244)
Q Consensus       173 -~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv  236 (244)
                       .||+++|++|+++|+.+..+.+.+|+.+...+|+....++ ..++.+++.|.. +||..-+..+
T Consensus       138 klRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl-~kr~TY~pq~  200 (353)
T KOG1381|consen  138 KLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL-MKRFTYWPQL  200 (353)
T ss_pred             cccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh-hhhcchhHHH
Confidence             7999999999999999999999999999888997775554 456777888987 5887776654

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.43  E-value=2.2e-12  Score=118.04  Aligned_cols=135  Identities=16%  Similarity=0.009  Sum_probs=102.2

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccc----cCC
Q 026038           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDK----INK  171 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDr----ink  171 (244)
                      .+.+.||+++||||+..+++++++|.++|......+++.   ..+++++++.+++.+.|..|||+|++  .|.    ..+
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence            346899999999999999999999999996543345553   35788899999999999999999987  675    223


Q ss_pred             CCCcccCCCcCHHHHHHHHHHHHHHHHHHHHH----HcHHHHHHHHHHHHHHhhhcCCcCCCc---chhhHH
Q 026038          172 PYLPLASGELSMGTGIAICAGSALLSLALAFL----SGSPAVLCAVIAWGLTGAAYSVPVSGL---ILYNII  236 (244)
Q Consensus       172 p~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~----l~~~~~ll~ll~~~~l~~~YS~~LK~l---~l~~iv  236 (244)
                      -++-+...+++++.++.+.+.+...+.+++..    .+++.+.++ +.+++.++.|+++=||+   ++.+|.
T Consensus        83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTgGp~PlgY~gLGEi~  153 (303)
T COG1575          83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTGGPFPLGYMGLGEIF  153 (303)
T ss_pred             ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeeccCCcCcccCCHHHHH
Confidence            36778888899999988888887776665443    354433443 56688899999864554   455544

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.43  E-value=3.5e-12  Score=116.23  Aligned_cols=131  Identities=13%  Similarity=-0.032  Sum_probs=97.7

Q ss_pred             HHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccccCCCCCcccCCC
Q 026038          103 ISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLPLASGE  180 (244)
Q Consensus       103 ~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDrinkp~RPLpsG~  180 (244)
                      |++.+||+++..++++++.|.++|....+.+++..   .++++++++++|+++|.+|||+|++  .|+.+.  ....++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCccccc
Confidence            67899999999999999999999965444677643   3567789999999999999999987  588432  1233344


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHHhhhcCCc---CCCcchhhHHHhh
Q 026038          181 LSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSVP---VSGLILYNIINLI  239 (244)
Q Consensus       181 IS~~~Al~~~i~l~~lgl~la~~l----~~~~~ll~ll~~~~l~~~YS~~---LK~l~l~~iv~~~  239 (244)
                      .+++++...+.++.+++++++.++    + |.++...+.+++.+++||.+   +|+.++.++.-.+
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l  141 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWL  141 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHH
Confidence            568999888888888877655443    4 33333344578889999964   8888888876544

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.33  E-value=8.4e-12  Score=112.47  Aligned_cols=119  Identities=21%  Similarity=0.195  Sum_probs=79.5

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCccc
Q 026038           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA  177 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLp  177 (244)
                      +.+++++++.|+.+......++..+..... .. +...     ....+++++++++++|++|||+|+|+|++|+|+||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~-~~-~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL-LL-GLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHH-HH-cChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            457899999999988777665544332110 01 1111     1345678899999999999999999999999999998


Q ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHH-----HcHHHHHHHHHHHHHHhhhcCCcCC
Q 026038          178 SGELSMGTGIAICAGSALLSLALAFL-----SGSPAVLCAVIAWGLTGAAYSVPVS  228 (244)
Q Consensus       178 sG~IS~~~Al~~~i~l~~lgl~la~~-----l~~~~~ll~ll~~~~l~~~YS~~LK  228 (244)
                      ++    +++.....++..+++.++.+     .+++.+.++++ +.+++++||.+.|
T Consensus        75 s~----~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~Ys~~~~  125 (285)
T PRK12872         75 SE----TKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFII-PLILGILYSVFFK  125 (285)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHhChhH
Confidence            44    55555444444444443333     36666555544 5666999999543

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.21  E-value=2.8e-10  Score=104.72  Aligned_cols=74  Identities=24%  Similarity=0.215  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCC
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV  225 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~  225 (244)
                      +++.+...++|++|||+|+|+|++|+|+||.+    +.+.++.+.++.+++|+++++..|++  ++++ ++++.+++||.
T Consensus        65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~--ll~l-l~~l~g~lYS~  137 (307)
T PRK13591         65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGML--LLAF-LPFITGYLYSK  137 (307)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHH--HHHH-HHHHHHHHhcC
Confidence            45668899999999999999999999999987    89999999999999999999998854  2343 45667999997


Q ss_pred             c
Q 026038          226 P  226 (244)
Q Consensus       226 ~  226 (244)
                      .
T Consensus       138 G  138 (307)
T PRK13591        138 G  138 (307)
T ss_pred             C
Confidence            3

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=97.92  E-value=3.1e-06  Score=75.41  Aligned_cols=144  Identities=13%  Similarity=-0.026  Sum_probs=107.4

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccccCCCCCc
Q 026038           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLP  175 (244)
Q Consensus        98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDrinkp~RP  175 (244)
                      ++.+.|+-..||+.......++..|.++|+.+....++.+.. .++..++.+..+.++|..|-|+|.-  +|+...-+|.
T Consensus        59 ~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~-~fl~a~avlavh~agnlvntyfdf~kgid~kkaddrt  137 (359)
T KOG4581|consen   59 MKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLAT-FFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDRT  137 (359)
T ss_pred             HHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHH-HHHHHhhheeeecccchhhhhhhhhhccccccccchh
Confidence            578999999999999999999999999997543322333222 2345567788899999999999974  8988777999


Q ss_pred             ccCCCcCHHHHHHHHHHHHHHHHHHHH---HHcHH---HHHHHHHHHHHHhhhcCCc--CCCcchhhHHHhhhcc
Q 026038          176 LASGELSMGTGIAICAGSALLSLALAF---LSGSP---AVLCAVIAWGLTGAAYSVP--VSGLILYNIINLIKHN  242 (244)
Q Consensus       176 LpsG~IS~~~Al~~~i~l~~lgl~la~---~l~~~---~~ll~ll~~~~l~~~YS~~--LK~l~l~~iv~~~~~~  242 (244)
                      ++.-.+.+.++..++..+..+|...+.   .+++.   -+.+..++++.-.++|+..  +|...+.|.|-+|-.|
T Consensus       138 lvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggigfkyialgdliili~fg  212 (359)
T KOG4581|consen  138 LVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGIGFKYIALGDLIILILFG  212 (359)
T ss_pred             HHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecccceEEEeccCEEEEEeec
Confidence            999999999999999999888776533   33332   2233344556667788864  7888888877666443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=95.89  E-value=0.29  Score=45.56  Aligned_cols=70  Identities=21%  Similarity=0.217  Sum_probs=40.3

Q ss_pred             HhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHc-----HHHHHHHHHHHHHHhhhcCCc
Q 026038          157 SLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSLALAFLSG-----SPAVLCAVIAWGLTGAAYSVP  226 (244)
Q Consensus       157 ~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~-----~~~~ll~ll~~~~l~~~YS~~  226 (244)
                      .+||+-|.|.|+.+. +.-|+.=|+=.-+.......++..+.++++..++     |...+..++.+++....|+.+
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~~  272 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSSP  272 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcCC
Confidence            689999999999875 4788866643333222222222222222333333     233444556677778889875

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=93.86  E-value=0.8  Score=42.37  Aligned_cols=46  Identities=13%  Similarity=-0.051  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhhhhhcccccccCCC-CCcccCCCcCHHHHHHHHHHHHHH
Q 026038          148 QIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALL  196 (244)
Q Consensus       148 ~~l~~~a~~~iND~~D~diDrinkp-~RPLpsG~IS~~~Al~~~i~l~~l  196 (244)
                      ..+........||+-|+|.|+.+.+ .-|+-=|   .+.+..+...+.++
T Consensus       183 ~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~ly~~l~~~  229 (304)
T PRK07419        183 LGLATSLILFCSHFHQVEDDLAAGKRSPIVRLG---TKRGAQLLPWIVGL  229 (304)
T ss_pred             HHHHHHHHHHHcCCcchhhHHHcCCcceeeeec---hHhHHHHHHHHHHH
Confidence            3355677778899999999998754 6776545   44444444444333

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=93.76  E-value=0.81  Score=42.52  Aligned_cols=51  Identities=16%  Similarity=0.117  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccCCC-CCcccCCCcCHHHHHHHHHHHHHH
Q 026038          143 KAVVAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALL  196 (244)
Q Consensus       143 lall~~~l~~~a~~~iND~~D~diDrinkp-~RPLpsG~IS~~~Al~~~i~l~~l  196 (244)
                      +.-+.+.+..+..+..|++.|.|.|+.|.+ .-|+-=|   .+.++.+..+++..
T Consensus       180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG---~~~~~~l~~~l~~~  231 (303)
T COG1575         180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLG---RKNARKLYAALLVV  231 (303)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeec---cHhHHHHHHHHHHH
Confidence            334566677778888899999999999987 4554334   34444444443333

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=93.45  E-value=1.1  Score=40.69  Aligned_cols=38  Identities=18%  Similarity=0.141  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCCcC
Q 026038          145 VVAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGELS  182 (244)
Q Consensus       145 ll~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~IS  182 (244)
                      .++.++-+.+-..+|++.|+|.|+.. .|.-|+.-|+=+
T Consensus       166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~  204 (281)
T TIGR01474       166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNT  204 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhh
Confidence            34566667777889999999999965 578888888543

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=93.41  E-value=1.4  Score=39.65  Aligned_cols=48  Identities=21%  Similarity=0.169  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHH
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALL  196 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~l  196 (244)
                      +..++.......+||+-|+|.|+.+. +.-|..-|+   +.+..+..++.++
T Consensus       168 ~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~~~~~  216 (285)
T PRK12872        168 VFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLILNLL  216 (285)
T ss_pred             HHHHHHHHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHHHHHH
Confidence            34445566677889999999999754 578887776   4444444443333

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=93.12  E-value=0.64  Score=42.05  Aligned_cols=35  Identities=23%  Similarity=0.209  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~  180 (244)
                      +..++.+..-..+||.-|+|.|+.. .+.-|+.-|+
T Consensus       165 ~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~  200 (282)
T TIGR01475       165 IGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence            3455666667789999999999854 5688888883

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=92.53  E-value=2  Score=38.93  Aligned_cols=50  Identities=20%  Similarity=0.145  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHHHH
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSL  198 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~lgl  198 (244)
                      +...+........||+-|+|.|+.+. +.-|+-=|   .+.+..+..++..++.
T Consensus       175 l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~~~~~  225 (293)
T PRK06080        175 LPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALLALAY  225 (293)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHHHHHH
Confidence            34455667777889999999999764 46666545   4454444444444433

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=91.96  E-value=0.96  Score=41.99  Aligned_cols=52  Identities=21%  Similarity=0.162  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHHHH
Q 026038          144 AVVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSL  198 (244)
Q Consensus       144 all~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~lgl  198 (244)
                      ..+...+..+.....||+.|+|.|+.+. +.-|+.=|   .+.+..+..++.+++.
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG---~~~a~~l~~~l~~~a~  246 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIG---REKGVVLFAILFYASY  246 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEc---HHhHHHHHHHHHHHHH
Confidence            3455566777778899999999999775 46776555   4555544444444433

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=91.73  E-value=2.3  Score=38.49  Aligned_cols=37  Identities=16%  Similarity=0.075  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCc
Q 026038          145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGEL  181 (244)
Q Consensus       145 ll~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~I  181 (244)
                      .+..++.+..-..+|++.|+|.|+.+. +.-|+.-|+=
T Consensus       171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~  208 (285)
T PRK12847        171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNK  208 (285)
T ss_pred             HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccc
Confidence            345566667777889999999999654 6888877753

>PLN02922 prenyltransferase

Probab=91.70  E-value=0.94  Score=42.10  Aligned_cols=49  Identities=12%  Similarity=0.049  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccCCC-CCcccCCCcCHHHHHHHHHHHHHHH
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALLS  197 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrinkp-~RPLpsG~IS~~~Al~~~i~l~~lg  197 (244)
                      +...+..+.....||+-|+|.|+.+.+ .-|+.=|   .+.+..+...+..++
T Consensus       195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l~~~l~~~~  244 (315)
T PLN02922        195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLG---TEKGSRVVRWAVLLL  244 (315)
T ss_pred             HHHHHHHHHHHHHccCcchhhHHHcCccceeeEEC---hHHHHHHHHHHHHHH
Confidence            344456667788899999999998764 6776545   455554444444433

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=91.02  E-value=3.1  Score=38.03  Aligned_cols=49  Identities=14%  Similarity=-0.035  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHHHH
Q 026038          147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSL  198 (244)
Q Consensus       147 ~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~lgl  198 (244)
                      ...+...+....||+-|+|.|+.+. +.-|+-=|   .+.+..+...+..++.
T Consensus       169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l~~~l~~~~y  218 (285)
T TIGR02235       169 LVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLG---TKLAAKIVPWVISLSY  218 (285)
T ss_pred             HHHHHHHHHHHhcCCccchhHHHcCCcceeheec---HHhHHHHHHHHHHHHH
Confidence            3446677788889999999999775 46676444   5555555555544443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PLN00012 chlorophyll synthetase; Provisional

Probab=90.85  E-value=3.6  Score=39.27  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038          147 AQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (244)
Q Consensus       147 ~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~  180 (244)
                      ...+...+....||+-|+|.|+.. ++.-|+.-|+
T Consensus       260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            344566677789999999999865 5788887776

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=89.93  E-value=4.8  Score=36.49  Aligned_cols=38  Identities=13%  Similarity=0.119  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcC
Q 026038          145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELS  182 (244)
Q Consensus       145 ll~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS  182 (244)
                      .+..++-+..-...|.+.|+|.|+... +.-|+.-|+=.
T Consensus       168 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~  206 (282)
T PRK12848        168 FLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYD  206 (282)
T ss_pred             HHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcccc
Confidence            445566666777889999999999654 68888777643

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=89.93  E-value=5.2  Score=36.55  Aligned_cols=35  Identities=17%  Similarity=0.054  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~  180 (244)
                      +...+-+.+-..+|++-|+|.|+.. .+.-|+.-|+
T Consensus       166 ~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~  201 (284)
T PRK12888        166 LAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV  201 (284)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence            4555666677899999999999965 4677877675

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=89.55  E-value=1.3  Score=40.93  Aligned_cols=51  Identities=18%  Similarity=0.125  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHH
Q 026038          145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSAL  195 (244)
Q Consensus       145 ll~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~  195 (244)
                      +++.++-..+-.++|++-|+|.|+... +.-|+-=|+-+.+-+..+..+..+
T Consensus       183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~~~~~~~~~~v~  234 (300)
T PRK13106        183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGKWALTFAGLNQLFSVV  234 (300)
T ss_pred             HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHhhhHHHHHHHHHHHHHH
Confidence            345666667777899999999998654 688887774444433333333333

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=89.48  E-value=1.4  Score=40.36  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhhhhhccccccc-CCCCCcccCCCc
Q 026038          147 AQIFMNISLCSLNQICDVEIDKI-NKPYLPLASGEL  181 (244)
Q Consensus       147 ~~~l~~~a~~~iND~~D~diDri-nkp~RPLpsG~I  181 (244)
                      ..++-+.+-..+|++.|+|.|+. ..|.-|+.-|+=
T Consensus       170 ~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~  205 (291)
T PRK12886        170 AVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVN  205 (291)
T ss_pred             HHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCch
Confidence            34444555557888899999985 457888887763

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=89.00  E-value=5.3  Score=36.78  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCCc
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGEL  181 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~I  181 (244)
                      +..++.+..-...||+.|+|.|+.+ .+.-|+.-|+-
T Consensus       182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~  218 (297)
T PRK12871        182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK  218 (297)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence            4556667778899999999999965 46888887864

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=88.82  E-value=1.9  Score=38.98  Aligned_cols=34  Identities=26%  Similarity=0.231  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038          147 AQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (244)
Q Consensus       147 ~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~  180 (244)
                      ..++.+.+-..+||+-|+|.|+.. .+.-|+.-|+
T Consensus       162 ~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~  196 (279)
T PRK09573        162 CAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGI  196 (279)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence            344555566777999999999964 4688887664

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=88.78  E-value=2.5  Score=39.06  Aligned_cols=32  Identities=28%  Similarity=0.277  Sum_probs=24.6

Q ss_pred             HHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038          149 IFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (244)
Q Consensus       149 ~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~  180 (244)
                      .+...+....||+-|+|.|+.. ++.-|+.-|+
T Consensus       199 ~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        199 SLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            3445566889999999999865 5688887775

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=88.58  E-value=8.4  Score=35.26  Aligned_cols=57  Identities=19%  Similarity=0.180  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHc
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGELSMGTGIAICAGSALLSLALAFLSG  205 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~  205 (244)
                      ++..+...+...+||+-|+|.|+.. ++.-|..   +-.+.+..+..++.+++..+-+..+
T Consensus       172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~---lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATV---LGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHcCCccchhh---ccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777899999999999965 4566664   4456666666666555554433333

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=88.39  E-value=5.8  Score=36.28  Aligned_cols=47  Identities=13%  Similarity=0.140  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHHH
Q 026038          148 QIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLS  197 (244)
Q Consensus       148 ~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~lg  197 (244)
                      ..+........||+-|+|.|+.+. +.-|+-=|   .+.+..+...+...+
T Consensus       173 ~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG---~~~a~~l~~~l~~~a  220 (284)
T TIGR00751       173 TGLLACAVLNINNLRDIPTDARAGKNTLAVRLG---DARTRMYHQGLLAVA  220 (284)
T ss_pred             HHHHHHHHHHHcCcccchhHHHcCCEeehhhcc---hHhHHHHHHHHHHHH
Confidence            345556777789999999999765 46665444   555555554444444

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=88.22  E-value=3.1  Score=38.13  Aligned_cols=57  Identities=12%  Similarity=0.126  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHc
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSLALAFLSG  205 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~  205 (244)
                      ++..+...+...+||+-|+|.||.+. +.-|.   ++-.+.+..+..++.+++.++...++
T Consensus       167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445577788999999999999764 46665   56678888888887777776554444

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=88.03  E-value=6.4  Score=35.96  Aligned_cols=40  Identities=15%  Similarity=0.107  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHH
Q 026038          145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMG  184 (244)
Q Consensus       145 ll~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~  184 (244)
                      .+..++-..+-..+|++-|+|.|+... +.-|+.-|+=+..
T Consensus       172 ~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~  212 (290)
T PRK12870        172 WAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPE  212 (290)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHH
Confidence            346677777888899999999999654 5777766655443

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=87.24  E-value=3.1  Score=38.95  Aligned_cols=38  Identities=29%  Similarity=0.285  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCCcCH
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGELSM  183 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~IS~  183 (244)
                      +...+...+...+||+-|+|.|+.. ++.-|+.=|+=..
T Consensus       187 ~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a  225 (331)
T PRK12392        187 GLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNT  225 (331)
T ss_pred             HHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhH
Confidence            3455667777789999999999965 4578876665433

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=86.92  E-value=4  Score=36.57  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHhhhhhcccccccCC-CCCcccCCC
Q 026038          147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (244)
Q Consensus       147 ~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~  180 (244)
                      ..++...+-..+||+-|+|.|+.+. +.-|+.-|+
T Consensus       163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~  197 (279)
T PRK12884        163 MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE  197 (279)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence            4455556678899999999998764 577876665

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=86.61  E-value=5  Score=37.08  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCc
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGEL  181 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~I  181 (244)
                      +..++...+...+||+.|+|.|+.+. +.-|+-=|+=
T Consensus       189 ~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~  225 (308)
T PRK12887        189 LFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQ  225 (308)
T ss_pred             HHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHH
Confidence            35556667778899999999999764 5677655543

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=86.46  E-value=11  Score=35.03  Aligned_cols=35  Identities=17%  Similarity=0.062  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~  180 (244)
                      ++.++-+..-..++++.|+|.|+.. .|.-|+.-|+
T Consensus       199 ~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~  234 (314)
T PRK12878        199 AGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD  234 (314)
T ss_pred             HHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence            3455556666677899999999864 5788887776

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=86.16  E-value=4  Score=36.80  Aligned_cols=31  Identities=26%  Similarity=0.248  Sum_probs=23.9

Q ss_pred             HHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038          150 FMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (244)
Q Consensus       150 l~~~a~~~iND~~D~diDrin-kp~RPLpsG~  180 (244)
                      +...+...+||+-|+|.|+.+ ++.-|+.-|+
T Consensus       172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~  203 (283)
T TIGR01476       172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV  203 (283)
T ss_pred             HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence            445556789999999999976 4578876666

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=86.03  E-value=6.9  Score=35.16  Aligned_cols=45  Identities=16%  Similarity=0.227  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHH
Q 026038          147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSA  194 (244)
Q Consensus       147 ~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~  194 (244)
                      ..++...+-..+||+-|+|.|+.+. |.-|+.-|+   +.+..+...+.
T Consensus       165 ~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~---~~t~~~~~~~~  210 (276)
T PRK12882        165 LAALATLAREIIKDVEDIEGDRAEGARTLPILIGV---RKALYVAAAFL  210 (276)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH---HHHHHHHHHHH
Confidence            3345556677899999999999764 677876665   44444443333

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=85.92  E-value=4.3  Score=37.34  Aligned_cols=42  Identities=29%  Similarity=0.388  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhhhhhcccccccC-CCCCcccCCCcCHHHHHHHHHHH
Q 026038          149 IFMNISLCSLNQICDVEIDKIN-KPYLPLASGELSMGTGIAICAGS  193 (244)
Q Consensus       149 ~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~IS~~~Al~~~i~l  193 (244)
                      .+...+....||+-|+|.|+.+ ++.-|+.-|+   +.+..+..++
T Consensus       193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~---~~a~~~~~~l  235 (306)
T TIGR02056       193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI---ETAAWICVGA  235 (306)
T ss_pred             HHHHHHHHHHHHccChHHHHHcCCcCcchhcCh---HHHHHHHHHH
Confidence            4466667789999999999966 4577776664   4444444433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=85.50  E-value=11  Score=34.51  Aligned_cols=35  Identities=26%  Similarity=0.323  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~  180 (244)
                      +..++-+.+-..+|++-|+|.|+.. .|.-|+.-|+
T Consensus       174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~  209 (291)
T PRK12874        174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE  209 (291)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence            4556666777789999999999854 5788887776

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=85.39  E-value=16  Score=33.52  Aligned_cols=36  Identities=22%  Similarity=0.177  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCc
Q 026038          146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGEL  181 (244)
Q Consensus       146 l~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~I  181 (244)
                      ++.++-..+-.++.++-|+|.|+... +.-|+-=|+=
T Consensus       166 ~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~  202 (286)
T PRK12895        166 ISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIK  202 (286)
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCc
Confidence            45555556667999999999999765 4666655543

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=82.82  E-value=12  Score=33.92  Aligned_cols=49  Identities=20%  Similarity=0.192  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccCCC-CCcccCCCcCHHHHHHHHHHHH
Q 026038          143 KAVVAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSA  194 (244)
Q Consensus       143 lall~~~l~~~a~~~iND~~D~diDrinkp-~RPLpsG~IS~~~Al~~~i~l~  194 (244)
                      +.+++..+...+-.+++|+-|+|-|+.+.- .-|..-|+   +.+..++....
T Consensus       171 ~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~---~~a~~l~~~~~  220 (289)
T COG0382         171 LLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGI---KKALALALLLL  220 (289)
T ss_pred             HHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCc---hhHHHHHHHHH
Confidence            334566777777789999999999998763 45554443   34444433333

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=81.62  E-value=7  Score=35.15  Aligned_cols=32  Identities=28%  Similarity=0.445  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038          149 IFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (244)
Q Consensus       149 ~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~  180 (244)
                      ++...+-...||+-|+|.|+.. .+.-|+.-|+
T Consensus       164 fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~  196 (277)
T PRK12883        164 FLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK  196 (277)
T ss_pred             HHHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence            3444556677999999999965 4688887775

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=81.46  E-value=11  Score=32.48  Aligned_cols=30  Identities=23%  Similarity=0.326  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHhhhhhcccccccCC-CCCcc
Q 026038          147 AQIFMNISLCSLNQICDVEIDKINK-PYLPL  176 (244)
Q Consensus       147 ~~~l~~~a~~~iND~~D~diDrink-p~RPL  176 (244)
                      ...+........||+-|+|.|+... +.-|.
T Consensus       154 ~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v  184 (257)
T PF01040_consen  154 FFFLLIFAIMFFNDIRDIEGDRKAGRRTLPV  184 (257)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHcCCcchHH
Confidence            3356666677788999999997544 45443

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=81.23  E-value=18  Score=33.10  Aligned_cols=35  Identities=17%  Similarity=0.149  Sum_probs=24.5

Q ss_pred             HHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHH
Q 026038          149 IFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTG  186 (244)
Q Consensus       149 ~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~A  186 (244)
                      .+........|++-|+|.|+.+. +.-|+   ++..+.+
T Consensus       181 ~l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a  216 (296)
T PRK05951        181 GLLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA  216 (296)
T ss_pred             HHHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence            34456677889999999999765 45565   4445555

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=80.93  E-value=24  Score=32.64  Aligned_cols=34  Identities=15%  Similarity=0.143  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHhhhhhcccccccCC-CCCcccCCC
Q 026038          147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (244)
Q Consensus       147 ~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~  180 (244)
                      +.++-+.+=..+=.+.|+|.|+... +.-|+.-|+
T Consensus       178 ~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~  212 (294)
T PRK12873        178 ATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS  212 (294)
T ss_pred             HHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh
Confidence            4444444444566667999999765 678888886

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=80.10  E-value=38  Score=31.41  Aligned_cols=31  Identities=23%  Similarity=0.183  Sum_probs=21.5

Q ss_pred             HHHHHHhhhhhcccccccCC-CCCcccCCCcC
Q 026038          152 NISLCSLNQICDVEIDKINK-PYLPLASGELS  182 (244)
Q Consensus       152 ~~a~~~iND~~D~diDrink-p~RPLpsG~IS  182 (244)
                      .++-.++.+.-|+|.|+... +.-|+.-|+=+
T Consensus       185 ~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~  216 (300)
T PRK12876        185 IAANDIIYAIQDLEFDRKEGLFSIPARFGEKK  216 (300)
T ss_pred             HHHHHHHHHHcCHhhHHHcCCccchHHHCchh
Confidence            33444677789999999765 57777666554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00