Citrus Sinensis ID: 026104

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEccccccccEEEEccccccHHHHHHccccEEccccccEEEEEEcccccEEEEcccccccccccccccccEEEEEcccccccccccccccccccccccccHHHHHcccccHHHHHHHHHcccccHHHHcccccHHHHcccccccccEEEEcccccEEEEEEEEEcccccccEEEEEEEcccccccccEEccEEEEEcccccEEEEccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccEEEEEEEcccccccccEEEccccccHHHHHHHHHHHcccccccEEEEEEcccccEEEEccccccHHcccccccccEEEEEEccccccccccccccccccEEEEccHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccEEEEEEEccccccccccEEEEEEccccccEccEEccEEccccccccEEEEcHHHEEEcccccccccccccc
Coil and Loop (DISEMBL)
masrlqqiegdeSVLLRVTHSnlksfsadvrfplqMSVESVKDKLwrkcgtsvnsmslelyddtntkvaaltdnsrplgfysplqgyrlhvidldpssvtsggwledtSLVEKYTiseeeyskrdgtfRKFKEKVLsqnpsavenklsnnymedlcsnitvgdrcevdpgakrGVVKYVGqaesiapgfwvgiqydeplgkhngivkgvryfecpplhgamvrpdkvkvgdyperdpfeedei
Flexible Loop (DISEMBL)
masrlqqiegdesvlLRVTHSNLksfsadvrfplQMSVESVKDKLWRKCGTsvnsmslelyddTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPssvtsggwledtslvekytiseeeyskrdgtfrkfkekvlsqnpsavenklsnnYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPlhgamvrpdkvkvgdyperdpfeedei
Low Complexity Region (SEG)
MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI
Disordered region (IsUnstruct)
*************VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTI********************************NNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVR********************
Disordered Region (DISOPRED)
*********GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDD***********SRPLGFYSPLQGYRLHVI********************************************************************VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERD****DEI
Disordered Region (DISEMBL)
********EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI
Disordered Region (DISPRO)
********EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERD*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q20728	229	Tubulin-specific chaperon	yes	no	0.868	0.921	0.422	1e-39
Q9D1E6	244	Tubulin-folding cofactor	yes	no	0.864	0.860	0.399	7e-35
Q5E951	244	Tubulin-folding cofactor	yes	no	0.872	0.868	0.402	6e-33
Q99426	244	Tubulin-folding cofactor	yes	no	0.897	0.893	0.386	2e-32
Q54Z01	270	Tubulin-specific chaperon	yes	no	0.909	0.818	0.363	6e-30
Q9UDT6	1046	CAP-Gly domain-containing	no	no	0.300	0.069	0.48	3e-14
Q9Z0H8	1047	CAP-Gly domain-containing	no	no	0.300	0.069	0.48	3e-14
O55156	1046	CAP-Gly domain-containing	no	no	0.300	0.069	0.466	9e-14
Q10235	234	Cell polarity protein alp	yes	no	0.543	0.564	0.328	2e-13
Q96DZ5	547	CAP-Gly domain-containing	no	no	0.271	0.120	0.470	4e-12

>sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3 PE=1 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 136/225 (60%), Gaps = 14/225 (6%)

Query: 16  LRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNS 75
           L +T +N   F  + ++P  MS+  +K KL    GT+V+SM ++L+D  +     LTD +
Sbjct: 7   LEIT-TNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGA 65

Query: 76  RPLGFYSPLQGYRLHVIDLDPSSVTSGGW-LEDTSLVEKYTISEEEYSKRDGTFRKFKEK 134
           + L       GYR+H +D     VT G    +D S+VEKY +S++ Y KR  + R +K+K
Sbjct: 66  KSLKDLGVRDGYRIHAVD-----VTGGNEDFKDESMVEKYEMSDDTYGKRTDSVRAWKKK 120

Query: 135 VLSQNPSA--VENKLSNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGF 189
           +  +  SA  +EN+ S+   E+   NI VG+RCEV  GA   +RG V YVG A     G 
Sbjct: 121 MQEEQGSAAPMENE-SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVG-ATKFKEGV 178

Query: 190 WVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPE 234
           WVG++YDEP+GK++G V GVRYF+C P +G  VRP  VKVGD+PE
Sbjct: 179 WVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKVGDFPE 223

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer.
Caenorhabditis elegans (taxid: 6239)

>sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2

 Score =  147 bits (371), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 91/228 (39%), Positives = 121/228 (53%), Gaps = 18/228 (7%)

Query: 21  SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80
           S+L SF ++ R+   +++   K KL    G+  + M LELY   +   + L      LG 
Sbjct: 17  SSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGS 76

Query: 81  YSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF--------- 131
           Y    G R+HVID    S    G  ED S VEKY IS E Y +R  T R F         
Sbjct: 77  YPVDDGCRIHVID---HSGVRLGEYEDVSKVEKYEISPEAYERRQNTVRSFMKRSKLGPY 133

Query: 132 KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPG 188
            E++ +Q  +    +LS    +   S I+VG RCEV   D   +RG V YVG  +   PG
Sbjct: 134 NEELRAQQEAEAAQRLSEEKAQ--ASAISVGSRCEVRAPDHSLRRGTVMYVGLTD-FKPG 190

Query: 189 FWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERD 236
           +WVG++YDEPLGK++G V G RYFEC   +GA V+P  V VGD+PE D
Sbjct: 191 YWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDFPEED 238

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer (By similarity). Involved in regulation of tubulin heterodimer dissociation. May function as a negative regulator of axonal growth.

Mus musculus (taxid: 10090)

>sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1

 Score =  140 bits (354), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 120/226 (53%), Gaps = 14/226 (6%)

Query: 21  SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80
           S+L SF +  R+   ++V   K KL    G+  + M LELY   +     L  +   LG 
Sbjct: 17  SSLNSFRSQKRYSRSLTVAEFKCKLQLVVGSPASCMELELYGPDDKFCCKLDQDDALLGS 76

Query: 81  YSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF--KEKVLSQ 138
           Y    G R+HVID   + +   G  ED S VEKY IS+E Y +R  + R F  + K+   
Sbjct: 77  YPVDDGCRIHVIDHSGARL---GEYEDISKVEKYEISQEAYEQRQDSIRSFLKRNKLGRF 133

Query: 139 NPSAVENKLSNNYM-----EDLCSNITVGDRCEV-DPGA--KRGVVKYVGQAESIAPGFW 190
           N      + + N       E   S I VG RCEV  PG   +RG V YVG  +   PG+W
Sbjct: 134 NEEERAQQEAENSQRLIEEEAQASTIPVGSRCEVRTPGQPPRRGTVMYVGLTD-FKPGYW 192

Query: 191 VGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERD 236
           +GI+YDEPLGK++G V G RYFEC   +GA V+P  V VGD+PE D
Sbjct: 193 IGIRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSVVTVGDFPEED 238

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer. Involved in regulation of tubulin heterodimer dissociation. May function as a negative regulator of axonal growth.

Bos taurus (taxid: 9913)

>sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/233 (38%), Positives = 123/233 (52%), Gaps = 15/233 (6%)

Query: 21  SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80
           S+L +F ++ R+   +++   K KL    G+  + M LELY   +   + L      LG 
Sbjct: 17  SSLNTFRSEKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVDDKFYSKLDQEDALLGS 76

Query: 81  YSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF-KEKVLSQN 139
           Y    G R+HVID   + +   G  ED S VEKYTIS+E Y +R  T R F K   L + 
Sbjct: 77  YPVDDGCRIHVIDHSGARL---GEYEDVSRVEKYTISQEAYDQRQDTVRSFLKRSKLGRY 133

Query: 140 PSAVENKLSNNYMEDLC------SNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFW 190
                 +      + L       S+I VG RCEV       +RG V YVG  +   PG+W
Sbjct: 134 NEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYVGLTD-FKPGYW 192

Query: 191 VGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 243
           +G++YDEPLGK++G V G RYFEC   +GA V+P  V VGD+PE D +  DEI
Sbjct: 193 IGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPAVVTVGDFPEED-YGLDEI 244

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer. Involved in regulation of tubulin heterodimer dissociation. May function as a negative regulator of axonal growth.

Homo sapiens (taxid: 9606)

>sp|Q54Z01|TBCB_DICDI Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb PE=3 SV=1

 Score =  130 bits (328), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 127/242 (52%), Gaps = 21/242 (8%)

Query: 13  SVLLRVTHSNLKSFSADVR----FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDT--NT 66
           +V L +THS L   S        F L + ++  K+KL+R  GT    M L L D+   N 
Sbjct: 31  NVRLEITHSVLTGESLGTNNFKNFSLDLKIKDFKEKLYRFVGTEPKYMELILRDENKVND 90

Query: 67  KVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDG 126
                 D+ + LG Y P  G  +H+ID DP++  S   L+D S   K  ISEE+Y+KR+G
Sbjct: 91  ICKIDDDDDKTLGSYEPKDGMNVHIIDKDPNNFVS--ELQDISKAPKPVISEEDYNKREG 148

Query: 127 TFRKFKEKVLSQNPSAVENKLSNNYMEDLCS------NITVGDRCEV---DP---GAKRG 174
           T++K+KE+   +  +               +       I VGDRC+V   DP     + G
Sbjct: 149 TYKKWKEENQLKKENDTTATTVTATTTTTNNATDTEIEIKVGDRCKVISDDPTNYDERLG 208

Query: 175 VVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPE 234
            V+YVG  E  + G W+G++ D PLGK++G VKG +YF+C P +G   +P  V VGDYPE
Sbjct: 209 KVQYVGTVE-FSSGVWIGVELDLPLGKNDGSVKGKQYFQCSPKYGCFAKPKNVLVGDYPE 267

Query: 235 RD 236
            +
Sbjct: 268 EE 269

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 153 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 212
           +D   +  VG+R  V+ G K GVV+Y+G+ +  APG W G+  D+P+GK++G V GVRYF
Sbjct: 73  DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGVRYF 130

Query: 213 ECPPLHGAMVRPDKV 227
           ECP L G   RP K+
Sbjct: 131 ECPALQGIFTRPSKL 145

Seems to link microtubules to dendritic lamellar body (DLB), a membranous organelle predominantly present in bulbous dendritic appendages of neurons linked by dendrodendritic gap junctions. May operates in the control of brain-specific organelle translocations.

Homo sapiens (taxid: 9606)

>sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 153 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 212
           +D   +  VG+R  V+ G K GVV+Y+G+ +  APG W G+  D+P+GK++G V GVRYF
Sbjct: 74  DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGVRYF 131

Query: 213 ECPPLHGAMVRPDKV 227
           ECP L G   RP K+
Sbjct: 132 ECPALQGIFTRPSKL 146

Seems to link microtubules to dendritic lamellar body (DLB), a membranous organelle predominantly present in bulbous dendritic appendages of neurons linked by dendrodendritic gap junctions. May operates in the control of brain-specific organelle translocations.

Mus musculus (taxid: 10090)

>sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus GN=Clip2 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 153 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 212
           +D   +  VG+R  V+ G K GVV+Y+G+ +  APG W G+  D+P+GK++G V G+RYF
Sbjct: 74  DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGLRYF 131

Query: 213 ECPPLHGAMVRPDKV 227
           ECP L G   RP K+
Sbjct: 132 ECPALQGIFTRPSKL 146

Seems to link microtubules to dendritic lamellar body (DLB), a membranous organelle predominantly present in bulbous dendritic appendages of neurons linked by dendrodendritic gap junctions. May operates in the control of brain-specific organelle translocations.

Rattus norvegicus (taxid: 10116)

>sp|Q10235|ALP11_SCHPO Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp11 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 11/143 (7%)

Query: 105 LEDTSLVEKYTISEEEYSKRDGTFRKFKEK--VLSQNPSAVENKLSNNY-----MEDLCS 157
            +D S V+KY +  E+Y  R  +   +K++  +   NP    +K S        + DL  
Sbjct: 93  FDDLSQVDKYVMPREQYENRTDSVYAWKKRNQLGRFNPDFEASKASRQESLKRELVDLQK 152

Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIA-PGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
           N+    RC    G + G ++Y+G    I     WVG+++DEP+GK++G V G RYF    
Sbjct: 153 NLN--SRC-CAAGERYGTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVSGKRYFNAKN 209

Query: 217 LHGAMVRPDKVKVGDYPERDPFE 239
            HG+ +R  +V+VGD+P  D  E
Sbjct: 210 KHGSFLRSSEVEVGDFPPEDILE 232

Required for microtubule function and cell polarity. Involved in the proper folding of alpha-tubulin.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q96DZ5|CLIP3_HUMAN CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3 PE=1 SV=3

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 220
           VGD+  V  G K+G+V++ G+ +  APG+W GI+ D+P GKH+G V GVRYF CPP HG 
Sbjct: 418 VGDQVLVA-GQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGV 475

Query: 221 MVRPDKVK 228
                +++
Sbjct: 476 FAPASRIQ 483

Functions as a cytoplasmic linker protein. Involved in TGN-endosome dynamics.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
255576538	243	tubulin-specific chaperone B, putative [	1.0	1.0	0.798	1e-118
224086851	243	tubulin folding cofactor [Populus tricho	1.0	1.0	0.786	1e-114
449449791	245	PREDICTED: tubulin-specific chaperone B-	1.0	0.991	0.795	1e-114
225441260	242	PREDICTED: tubulin-specific chaperone B	0.995	1.0	0.810	1e-114
225441262	243	PREDICTED: tubulin-specific chaperone B	0.995	0.995	0.799	1e-111
388508528	243	unknown [Lotus japonicus]	1.0	1.0	0.765	1e-111
297829550	243	tubulin folding cofactor B [Arabidopsis	1.0	1.0	0.761	1e-110
22330955	243	tubulin folding cofactor B [Arabidopsis	1.0	1.0	0.753	1e-109
51971605	243	tubulin folding cofactor B [Arabidopsis	1.0	1.0	0.753	1e-109
20514259	243	tubulin folding cofactor B [Arabidopsis	1.0	1.0	0.748	1e-108

>gi|255576538|ref|XP_002529160.1| tubulin-specific chaperone B, putative [Ricinus communis] gi|223531384|gb|EEF33219.1| tubulin-specific chaperone B, putative [Ricinus communis]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 194/243 (79%), Positives = 229/243 (94%)

Query: 1   MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL 60
           M S+LQ+IEGDESV+LR+THSNLK+FSADVRF L+ +VESVK+KLWRKCGTSVNSM+L+L
Sbjct: 1   MGSKLQKIEGDESVVLRITHSNLKTFSADVRFSLESTVESVKEKLWRKCGTSVNSMTLQL 60

Query: 61  YDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEE 120
           YDDTN+K+  L+D+SRPLGFYSPL GYR+HVID+DPSSVTSGGWLEDTSLVEKYTISEE 
Sbjct: 61  YDDTNSKICDLSDDSRPLGFYSPLDGYRIHVIDVDPSSVTSGGWLEDTSLVEKYTISEEA 120

Query: 121 YSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVG 180
           Y KR GTFRKFKEK++SQNPSA E K++ NYMEDLC+NI +GDRCEV+PGAKRG+VK+VG
Sbjct: 121 YEKRGGTFRKFKEKLVSQNPSAFEPKITENYMEDLCANIKLGDRCEVEPGAKRGIVKFVG 180

Query: 181 QAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEE 240
           +AES+APGFWVG+QYDEPLGKH+G+VKGVRYF+CPPLHG M+RPDK+KVGDYPERDPFE+
Sbjct: 181 RAESLAPGFWVGVQYDEPLGKHDGLVKGVRYFDCPPLHGGMIRPDKIKVGDYPERDPFED 240

Query: 241 DEI 243
           +EI
Sbjct: 241 EEI 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086851|ref|XP_002307984.1| tubulin folding cofactor [Populus trichocarpa] gi|118483420|gb|ABK93610.1| unknown [Populus trichocarpa] gi|222853960|gb|EEE91507.1| tubulin folding cofactor [Populus trichocarpa]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/243 (78%), Positives = 220/243 (90%)

Query: 1   MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL 60
           MAS   QI+ DE+VLLRVTHSN+KSFSA++RF LQ SVE+VKDKLWRKCGTSVNSM LEL
Sbjct: 1   MASSRFQIQPDEAVLLRVTHSNIKSFSAEIRFSLQSSVEAVKDKLWRKCGTSVNSMQLEL 60

Query: 61  YDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEE 120
           YDD N+KV+ LTD+SRPLGFYSP  GYRLH+IDLDPSSVT+GGWLED S VEKY+ISEE 
Sbjct: 61  YDDANSKVSNLTDDSRPLGFYSPFDGYRLHIIDLDPSSVTAGGWLEDISSVEKYSISEEA 120

Query: 121 YSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVG 180
           Y KRDGTFRKFKEK+ +QNPSA   K++++YMEDLC+NI VGDRCE+DPG KRGVVKYVG
Sbjct: 121 YDKRDGTFRKFKEKMAAQNPSAFAPKITDDYMEDLCANIKVGDRCEIDPGEKRGVVKYVG 180

Query: 181 QAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEE 240
           +AES+APGFWVG+Q+DEP GKH+G+VKGVRYF+ PPLHGAM+RPDKVKVGDYPERDPFEE
Sbjct: 181 RAESLAPGFWVGVQFDEPFGKHDGMVKGVRYFDSPPLHGAMIRPDKVKVGDYPERDPFEE 240

Query: 241 DEI 243
           +EI
Sbjct: 241 EEI 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449791|ref|XP_004142648.1| PREDICTED: tubulin-specific chaperone B-like [Cucumis sativus]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/245 (79%), Positives = 223/245 (91%), Gaps = 2/245 (0%)

Query: 1   MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL 60
           MASRLQQIE DESVLLRVTH+NLKSF++DVRF LQMSVESVK+KLWRKCGTSVNSM LEL
Sbjct: 1   MASRLQQIEKDESVLLRVTHANLKSFTSDVRFSLQMSVESVKEKLWRKCGTSVNSMCLEL 60

Query: 61  YDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEE 120
           YDD+ +K++ LTDN  PLGFYSPL GYRLH+IDLDPSSVTSGGWLEDTSLVEK+ ISEE 
Sbjct: 61  YDDSGSKISDLTDNCIPLGFYSPLDGYRLHIIDLDPSSVTSGGWLEDTSLVEKFQISEEA 120

Query: 121 YSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVG 180
           Y KRD TFRKFKEK+ SQNPSA E+K+S+NYME+LC+NI VGDRC+V+PG KRGVVK+VG
Sbjct: 121 YDKRDDTFRKFKEKLASQNPSAFESKISDNYMEELCANIKVGDRCQVEPGEKRGVVKFVG 180

Query: 181 QAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPF-- 238
           +AES+APGFWVG+QYDEPLGK++G VKG+ YF+C P HGAMVRPDKVKVG+YPERDPF  
Sbjct: 181 RAESLAPGFWVGVQYDEPLGKNDGTVKGIHYFDCSPFHGAMVRPDKVKVGNYPERDPFDD 240

Query: 239 EEDEI 243
           E+DEI
Sbjct: 241 EDDEI 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441260|ref|XP_002274343.1| PREDICTED: tubulin-specific chaperone B isoform 1 [Vitis vinifera] gi|359482231|ref|XP_003632738.1| PREDICTED: tubulin-specific chaperone B [Vitis vinifera] gi|297739921|emb|CBI30103.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/243 (81%), Positives = 220/243 (90%), Gaps = 1/243 (0%)

Query: 1   MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL 60
           MASRLQ I+ DESV LRVTH N+KSFSADVRF LQM+VESVKDKLWRKCGTSVNSM LEL
Sbjct: 1   MASRLQ-IQEDESVSLRVTHGNIKSFSADVRFSLQMTVESVKDKLWRKCGTSVNSMCLEL 59

Query: 61  YDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEE 120
           YDDT  K++ L+DN RPLGFYSP  GYRLHVIDLDPSSVTSGGWLEDTSLVEKY+ISEE 
Sbjct: 60  YDDTGAKISVLSDNLRPLGFYSPQDGYRLHVIDLDPSSVTSGGWLEDTSLVEKYSISEEA 119

Query: 121 YSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVG 180
           Y K DGTFRKFKEK+  QNPS +E+K+S++YM DLC+NI VGDRCEV+PG KRGVVK+VG
Sbjct: 120 YEKLDGTFRKFKEKLAFQNPSILESKISDHYMGDLCANIKVGDRCEVEPGEKRGVVKFVG 179

Query: 181 QAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEE 240
           +A+S+APGFWVG+QYDEPLGKH+G+VKG RYF+CPPLHGAMVRPDKVKVGDYPERD FEE
Sbjct: 180 RAQSLAPGFWVGVQYDEPLGKHDGMVKGTRYFDCPPLHGAMVRPDKVKVGDYPERDLFEE 239

Query: 241 DEI 243
           DEI
Sbjct: 240 DEI 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441262|ref|XP_002274425.1| PREDICTED: tubulin-specific chaperone B isoform 2 [Vitis vinifera]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/244 (79%), Positives = 219/244 (89%), Gaps = 2/244 (0%)

Query: 1   MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL 60
           MASRLQ I+ DESV LRVTH N+KSFSADVRF LQM+VESVKDKLWRKCGTSVNSM LEL
Sbjct: 1   MASRLQ-IQEDESVSLRVTHGNIKSFSADVRFSLQMTVESVKDKLWRKCGTSVNSMCLEL 59

Query: 61  YDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEE 120
           YDDT  K++ L+DN RPLGFYSP  GYRLHVIDLDPSSVTSGGWLEDTSLVEKY+ISEE 
Sbjct: 60  YDDTGAKISVLSDNLRPLGFYSPQDGYRLHVIDLDPSSVTSGGWLEDTSLVEKYSISEEA 119

Query: 121 YSKRDGTFRKFKEKVLSQNPSA-VENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYV 179
           Y K DGTFRKFKEK+  QNPS+ +  ++S++YM DLC+NI VGDRCEV+PG KRGVVK+V
Sbjct: 120 YEKLDGTFRKFKEKLAFQNPSSDLCLQISDHYMGDLCANIKVGDRCEVEPGEKRGVVKFV 179

Query: 180 GQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFE 239
           G+A+S+APGFWVG+QYDEPLGKH+G+VKG RYF+CPPLHGAMVRPDKVKVGDYPERD FE
Sbjct: 180 GRAQSLAPGFWVGVQYDEPLGKHDGMVKGTRYFDCPPLHGAMVRPDKVKVGDYPERDLFE 239

Query: 240 EDEI 243
           EDEI
Sbjct: 240 EDEI 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508528|gb|AFK42330.1| unknown [Lotus japonicus]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/243 (76%), Positives = 218/243 (89%)

Query: 1   MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL 60
           MAS LQ+I+GDE+VLLRVTHSNLK+F+ D+RF LQ++VE+VK+KLW+KCGTSVNSM LEL
Sbjct: 1   MASSLQKIDGDETVLLRVTHSNLKTFNPDIRFSLQLTVEAVKEKLWKKCGTSVNSMHLEL 60

Query: 61  YDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEE 120
           YDDT+ K+  LTDNS+PLGFYSPL G+RLHV+DLDPSSVTSGGWLEDTSLVEKY ISEE 
Sbjct: 61  YDDTHVKITDLTDNSKPLGFYSPLDGFRLHVVDLDPSSVTSGGWLEDTSLVEKYQISEEA 120

Query: 121 YSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVG 180
           ++KR+GTFRK+KEK+ SQ PS VE K+ +NYMEDLC +I VG RCEV+PG KRGVV +VG
Sbjct: 121 FNKREGTFRKYKEKLTSQIPSNVEAKIPDNYMEDLCVDIKVGSRCEVEPGGKRGVVTFVG 180

Query: 181 QAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEE 240
           +AE + PGFWVG+QYDEPLGKH+G+VKGVRYFECPP HG +VRP KVKVGDYPERDPFEE
Sbjct: 181 RAEPLGPGFWVGVQYDEPLGKHDGMVKGVRYFECPPFHGGIVRPGKVKVGDYPERDPFEE 240

Query: 241 DEI 243
           DEI
Sbjct: 241 DEI 243

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829550|ref|XP_002882657.1| tubulin folding cofactor B [Arabidopsis lyrata subsp. lyrata] gi|297328497|gb|EFH58916.1| tubulin folding cofactor B [Arabidopsis lyrata subsp. lyrata]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/243 (76%), Positives = 216/243 (88%)

Query: 1   MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL 60
           MA+   Q+EGD+SV L +TH+NLKSFSADVRF  QMSVE+VK+KLW+KCGTSVNSM+LEL
Sbjct: 1   MATSRLQLEGDDSVHLHITHANLKSFSADVRFSPQMSVEAVKEKLWKKCGTSVNSMALEL 60

Query: 61  YDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEE 120
           YDD+ +KVA L+DNSRPLGF+SP  G+RLH+IDLDPSSVT+GGWLEDTSLVEKY ISEE+
Sbjct: 61  YDDSGSKVAVLSDNSRPLGFFSPFDGFRLHIIDLDPSSVTTGGWLEDTSLVEKYNISEED 120

Query: 121 YSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVG 180
           Y+KR  +FRKFKEK +SQ P+A E K   NYMEDLC+NI VGDRC+V+PG KRG+VKYVG
Sbjct: 121 YAKRTDSFRKFKEKRVSQIPAAAEAKTKENYMEDLCANIKVGDRCQVEPGEKRGMVKYVG 180

Query: 181 QAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEE 240
           +AES+ PG+WVGIQYDEPLGKH+G+VKG R+FECPPL G MVRPDKVKVGDYPERDPFEE
Sbjct: 181 RAESLGPGYWVGIQYDEPLGKHDGMVKGTRFFECPPLQGGMVRPDKVKVGDYPERDPFEE 240

Query: 241 DEI 243
           DEI
Sbjct: 241 DEI 243

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330955|ref|NP_187633.2| tubulin folding cofactor B [Arabidopsis thaliana] gi|51970508|dbj|BAD43946.1| tubulin folding cofactor B [Arabidopsis thaliana] gi|51970674|dbj|BAD44029.1| tubulin folding cofactor B [Arabidopsis thaliana] gi|332641352|gb|AEE74873.1| tubulin folding cofactor B [Arabidopsis thaliana]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 183/243 (75%), Positives = 214/243 (88%)

Query: 1   MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL 60
           MA+   Q+EGD+SV L +TH+NLKSFSAD RF  QMSVE+VK+KLW+KCGTSVNSM+LEL
Sbjct: 1   MATSRLQLEGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALEL 60

Query: 61  YDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEE 120
           YDD+ +KVA L+D+SRPLGF+SP  G+RLH+IDLDPSSVT+GGWLEDTSLVEKY ISEE+
Sbjct: 61  YDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLDPSSVTTGGWLEDTSLVEKYNISEED 120

Query: 121 YSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVG 180
           Y+KR  +FRKFKEK +SQNP A E K   NYMEDLC+NI VGDRC+V+PG KRG+VKYVG
Sbjct: 121 YAKRTDSFRKFKEKRVSQNPVAAEAKTKENYMEDLCANIKVGDRCQVEPGEKRGMVKYVG 180

Query: 181 QAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEE 240
           +AES+ PG+WVGIQYDEPLGKH+G+VKG R+FECP L G MVRPDKVKVGDYPERDPFEE
Sbjct: 181 RAESLGPGYWVGIQYDEPLGKHDGMVKGTRFFECPRLQGGMVRPDKVKVGDYPERDPFEE 240

Query: 241 DEI 243
           DEI
Sbjct: 241 DEI 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971605|dbj|BAD44467.1| tubulin folding cofactor B [Arabidopsis thaliana]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 183/243 (75%), Positives = 213/243 (87%)

Query: 1   MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL 60
           MA+   Q+EGD+SV L +TH+NLKSFSAD RF  QMSVE+VK KLW+KCGTSVNSM+LEL
Sbjct: 1   MATSRLQLEGDDSVHLHITHANLKSFSADARFSPQMSVEAVKGKLWKKCGTSVNSMALEL 60

Query: 61  YDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEE 120
           YDD+ +KVA L+D+SRPLGF+SP  G+RLH+IDLDPSSVT+GGWLEDTSLVEKY ISEE+
Sbjct: 61  YDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLDPSSVTTGGWLEDTSLVEKYNISEED 120

Query: 121 YSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVG 180
           Y+KR  +FRKFKEK +SQNP A E K   NYMEDLC+NI VGDRC+V+PG KRG+VKYVG
Sbjct: 121 YAKRTDSFRKFKEKRVSQNPVAAEAKTKENYMEDLCANIKVGDRCQVEPGEKRGMVKYVG 180

Query: 181 QAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEE 240
           +AES+ PG+WVGIQYDEPLGKH+G+VKG R+FECP L G MVRPDKVKVGDYPERDPFEE
Sbjct: 181 RAESLGPGYWVGIQYDEPLGKHDGMVKGTRFFECPRLQGGMVRPDKVKVGDYPERDPFEE 240

Query: 241 DEI 243
           DEI
Sbjct: 241 DEI 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20514259|gb|AAM22958.1|AF486849_1 tubulin folding cofactor B [Arabidopsis thaliana]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/243 (74%), Positives = 213/243 (87%)

Query: 1   MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL 60
           MA+   Q+EGD+SV L +TH+NLKSFSAD RF  QMSVE+VK+KLW+KCGTSVNSM+LEL
Sbjct: 1   MATSRLQLEGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALEL 60

Query: 61  YDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEE 120
           YDD+ +KVA L+D+ RPLGF+SP  G+RLH+IDLDPSSVT+GGWLEDTSLVEKY ISEE+
Sbjct: 61  YDDSGSKVAVLSDDFRPLGFFSPFDGFRLHIIDLDPSSVTTGGWLEDTSLVEKYNISEED 120

Query: 121 YSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVG 180
           Y+KR  +FRKFKEK +SQNP A E K   NYMEDLC+NI VGDRC+V+PG KRG+VKYVG
Sbjct: 121 YAKRTDSFRKFKEKRVSQNPVAAEAKTKENYMEDLCANIKVGDRCQVEPGEKRGMVKYVG 180

Query: 181 QAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEE 240
           +AES+ PG+WVGIQYDEPLGKH+G+VKG R+FECP L G MVRPDKVKVGDYPERDPFEE
Sbjct: 181 RAESLGPGYWVGIQYDEPLGKHDGMVKGTRFFECPRLQGGMVRPDKVKVGDYPERDPFEE 240

Query: 241 DEI 243
           DEI
Sbjct: 241 DEI 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2076224	243	EMB2804 "AT3G10220" [Arabidops	1.0	1.0	0.753	8.8e-102
ZFIN|ZDB-GENE-030131-9296	246	tbcb "tubulin folding cofactor	0.921	0.910	0.395	3.1e-35
MGI|MGI:1913661	244	Tbcb "tubulin folding cofactor	0.888	0.885	0.4	5.1e-35
DICTYBASE|DDB_G0277983	270	tbcB "tubulin folding cofactor	0.909	0.818	0.371	6.5e-35
UNIPROTKB|Q8HXL4	244	CKAP1 "Uncharacterized protein	0.897	0.893	0.403	1.3e-34
UNIPROTKB|Q5E951	244	TBCB "Tubulin-folding cofactor	0.897	0.893	0.403	3.6e-34
UNIPROTKB|Q99426	244	TBCB "Tubulin-folding cofactor	0.897	0.893	0.390	9.5e-34
RGD|1309965	244	Tbcb "tubulin folding cofactor	0.946	0.942	0.388	9.5e-34
FB|FBgn0034451	271	TBCB "tubulin-binding cofactor	0.913	0.819	0.308	1.4e-25
CGD|CAL0005089	282	orf19.2828 [Candida albicans (	0.555	0.478	0.351	9e-22

TAIR|locus:2076224 EMB2804 "AT3G10220" [Arabidopsis thaliana (taxid:3702)]

 Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
 Identities = 183/243 (75%), Positives = 214/243 (88%)

Query:     1 MASRLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL 60
             MA+   Q+EGD+SV L +TH+NLKSFSAD RF  QMSVE+VK+KLW+KCGTSVNSM+LEL
Sbjct:     1 MATSRLQLEGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALEL 60

Query:    61 YDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEE 120
             YDD+ +KVA L+D+SRPLGF+SP  G+RLH+IDLDPSSVT+GGWLEDTSLVEKY ISEE+
Sbjct:    61 YDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLDPSSVTTGGWLEDTSLVEKYNISEED 120

Query:   121 YSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVG 180
             Y+KR  +FRKFKEK +SQNP A E K   NYMEDLC+NI VGDRC+V+PG KRG+VKYVG
Sbjct:   121 YAKRTDSFRKFKEKRVSQNPVAAEAKTKENYMEDLCANIKVGDRCQVEPGEKRGMVKYVG 180

Query:   181 QAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEE 240
             +AES+ PG+WVGIQYDEPLGKH+G+VKG R+FECP L G MVRPDKVKVGDYPERDPFEE
Sbjct:   181 RAESLGPGYWVGIQYDEPLGKHDGMVKGTRFFECPRLQGGMVRPDKVKVGDYPERDPFEE 240

Query:   241 DEI 243
             DEI
Sbjct:   241 DEI 243

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0007021 "tubulin complex assembly" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0051301 "cell division" evidence=IMP

ZFIN|ZDB-GENE-030131-9296 tbcb "tubulin folding cofactor B" [Danio rerio (taxid:7955)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 95/240 (39%), Positives = 131/240 (54%)

Query:    14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTD 73
             V +RVT S + SF  + RF   +++   K KL    GT  + M L+L+  ++  +  L +
Sbjct:    13 VSVRVT-STVSSFEVNRRFNRGITIAEFKSKLELIVGTPASCMDLDLFSSSDKFLQKLDN 71

Query:    74 NSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKE 133
             N   LG Y      R+HV D    S T  G   D S VEK+ IS+E Y KR  + R FK+
Sbjct:    72 NEALLGSYHVDDDCRIHVTD---RSGTQSGEFTDLSKVEKFEISDEAYEKRADSIRNFKK 128

Query:   134 KVL-----SQNPSAVENKLSNNYMED--LCSNITVGDRCEVD-PG--AKRGVVKYVGQAE 183
              +       +  +  E  ++    E+      I VG+RC+V  PG   K G V YVG A+
Sbjct:   129 NMKLGRFNEEERAKQEEAVAKKEEEEKVAAEAIAVGNRCKVQVPGQATKIGTVMYVGTAD 188

Query:   184 SIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 243
                PG+WVG++YDEPLGKH+G V G RYFEC P +GA V+P  V VGD+PE D +  DE+
Sbjct:   189 -FKPGYWVGVKYDEPLGKHDGSVNGKRYFECEPKYGAFVKPLTVTVGDFPEED-YGLDEM 246

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1913661 Tbcb "tubulin folding cofactor B" [Mus musculus (taxid:10090)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 94/235 (40%), Positives = 127/235 (54%)

Query:    21 SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80
             S+L SF ++ R+   +++   K KL    G+  + M LELY   +   + L      LG 
Sbjct:    17 SSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGS 76

Query:    81 YSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF--------- 131
             Y    G R+HVID   S V  G + ED S VEKY IS E Y +R  T R F         
Sbjct:    77 YPVDDGCRIHVID--HSGVRLGEY-EDVSKVEKYEISPEAYERRQNTVRSFMKRSKLGPY 133

Query:   132 KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPG 188
              E++ +Q  +    +LS    +   S I+VG RCEV   D   +RG V YVG  +   PG
Sbjct:   134 NEELRAQQEAEAAQRLSEEKAQ--ASAISVGSRCEVRAPDHSLRRGTVMYVGLTD-FKPG 190

Query:   189 FWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 243
             +WVG++YDEPLGK++G V G RYFEC   +GA V+P  V VGD+PE D +  DE+
Sbjct:   191 YWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDFPEED-YGLDEM 244

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

DICTYBASE|DDB_G0277983 tbcB "tubulin folding cofactor B" [Dictyostelium discoideum (taxid:44689)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 90/242 (37%), Positives = 132/242 (54%)

Query:    13 SVLLRVTHSNLKSFSADVR----FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTK- 67
             +V L +THS L   S        F L + ++  K+KL+R  GT    M L L D+     
Sbjct:    31 NVRLEITHSVLTGESLGTNNFKNFSLDLKIKDFKEKLYRFVGTEPKYMELILRDENKVND 90

Query:    68 VAALTDNS-RPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDG 126
             +  + D+  + LG Y P  G  +H+ID DP++  S   L+D S   K  ISEE+Y+KR+G
Sbjct:    91 ICKIDDDDDKTLGSYEPKDGMNVHIIDKDPNNFVSE--LQDISKAPKPVISEEDYNKREG 148

Query:   127 TFRKFKEK--VLSQNPSAVEN----KLSNNYMEDLCSNITVGDRCEV---DP---GAKRG 174
             T++K+KE+  +  +N +          + N   D    I VGDRC+V   DP     + G
Sbjct:   149 TYKKWKEENQLKKENDTTATTVTATTTTTNNATDTEIEIKVGDRCKVISDDPTNYDERLG 208

Query:   175 VVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPE 234
              V+YVG  E  + G W+G++ D PLGK++G VKG +YF+C P +G   +P  V VGDYPE
Sbjct:   209 KVQYVGTVE-FSSGVWIGVELDLPLGKNDGSVKGKQYFQCSPKYGCFAKPKNVLVGDYPE 267

Query:   235 RD 236
              +
Sbjct:   268 EE 269

GO:0005874 "microtubule" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q8HXL4 CKAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 94/233 (40%), Positives = 126/233 (54%)

Query:    21 SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80
             S+L SF +  R+   ++V   KDKL    G+  + M LELY   +     L      LG 
Sbjct:    17 SSLNSFRSQKRYSRSLTVAEFKDKLQLVVGSPASCMELELYGPDDKFYVKLDQEDALLGS 76

Query:    81 YSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF-KEKVLS-- 137
             Y    G R+HVID   + +   G  ED S VEKY IS+E Y +R  + R F K   L   
Sbjct:    77 YPVDDGCRIHVIDHSGARL---GEYEDMSKVEKYKISQEAYDQRQNSVRSFLKRNKLGRY 133

Query:   138 --QNPSAVENKLSNNYMED--LCSNITVGDRCEVD-PGA--KRGVVKYVGQAESIAPGFW 190
               +  +  E + S   +E+    S I VG RCEV  PG   +RG V YVG  +   PG+W
Sbjct:   134 NEEERAQREAESSQRLIEEEAQASAIPVGSRCEVRAPGQPPRRGTVMYVGLTD-FKPGYW 192

Query:   191 VGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 243
             +G++YDEPLGK++G V G RYFEC   +GA V+P  V VGD+PE D +  DE+
Sbjct:   193 IGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSVVTVGDFPEED-YGLDEM 244

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5E951 TBCB "Tubulin-folding cofactor B" [Bos taurus (taxid:9913)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 94/233 (40%), Positives = 126/233 (54%)

Query:    21 SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80
             S+L SF +  R+   ++V   K KL    G+  + M LELY   +     L  +   LG 
Sbjct:    17 SSLNSFRSQKRYSRSLTVAEFKCKLQLVVGSPASCMELELYGPDDKFCCKLDQDDALLGS 76

Query:    81 YSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF-KEKVLS-- 137
             Y    G R+HVID   + +   G  ED S VEKY IS+E Y +R  + R F K   L   
Sbjct:    77 YPVDDGCRIHVIDHSGARL---GEYEDISKVEKYEISQEAYEQRQDSIRSFLKRNKLGRF 133

Query:   138 --QNPSAVENKLSNNYMED--LCSNITVGDRCEV-DPGA--KRGVVKYVGQAESIAPGFW 190
               +  +  E + S   +E+    S I VG RCEV  PG   +RG V YVG  +   PG+W
Sbjct:   134 NEEERAQQEAENSQRLIEEEAQASTIPVGSRCEVRTPGQPPRRGTVMYVGLTD-FKPGYW 192

Query:   191 VGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 243
             +GI+YDEPLGK++G V G RYFEC   +GA V+P  V VGD+PE D +  DE+
Sbjct:   193 IGIRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSVVTVGDFPEED-YGLDEM 244

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0030154 "cell differentiation" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|Q99426 TBCB "Tubulin-folding cofactor B" [Homo sapiens (taxid:9606)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 91/233 (39%), Positives = 126/233 (54%)

Query:    21 SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80
             S+L +F ++ R+   +++   K KL    G+  + M LELY   +   + L      LG 
Sbjct:    17 SSLNTFRSEKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVDDKFYSKLDQEDALLGS 76

Query:    81 YSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF-KEKVLS-- 137
             Y    G R+HVID   + +   G  ED S VEKYTIS+E Y +R  T R F K   L   
Sbjct:    77 YPVDDGCRIHVIDHSGARL---GEYEDVSRVEKYTISQEAYDQRQDTVRSFLKRSKLGRY 133

Query:   138 --QNPSAVENKLSNNYMEDLC--SNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFW 190
               +  +  E + +    E+    S+I VG RCEV       +RG V YVG  +   PG+W
Sbjct:   134 NEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYVGLTD-FKPGYW 192

Query:   191 VGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 243
             +G++YDEPLGK++G V G RYFEC   +GA V+P  V VGD+PE D +  DEI
Sbjct:   193 IGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPAVVTVGDFPEED-YGLDEI 244

GO:0005874 "microtubule" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

RGD|1309965 Tbcb "tubulin folding cofactor B" [Rattus norvegicus (taxid:10116)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 97/250 (38%), Positives = 131/250 (52%)

Query:     7 QIEGDESVLLRV-THSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTN 65
             ++ G  +  + V   S+L SF ++ R+    ++   K KL    G+  + M LELY   +
Sbjct:     2 EVSGTSAPTVTVFISSSLNSFRSEKRYSRSPTIAEFKCKLELVVGSPASCMELELYGADD 61

Query:    66 TKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRD 125
                + L      LG Y    G R+HVID   S V  G + ED S VEKY IS E Y +R 
Sbjct:    62 QFYSKLDQEDALLGSYPVDDGCRIHVID--HSGVRLGEY-EDVSKVEKYEISPEAYERRQ 118

Query:   126 GTFRKF---------KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVD-PGAK--R 173
              T R F          E++ +Q  +    +LS    E   S I+VG RCEV  PG    R
Sbjct:   119 NTVRSFMKRSKLGPYNEELRAQQEAEAAQRLSEE--EAQASAISVGSRCEVRAPGQSLHR 176

Query:   174 GVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 233
             G V YVG  +   PG+WVG++Y EPLGK++G V G RYFEC   +GA V+P  V VGD+P
Sbjct:   177 GTVMYVGLTD-FKPGYWVGVRYGEPLGKNDGSVNGKRYFECQARYGAFVKPAAVTVGDFP 235

Query:   234 ERDPFEEDEI 243
             E D +  DE+
Sbjct:   236 EED-YGLDEM 244

GO:0005737 "cytoplasm" evidence=ISO

FB|FBgn0034451 TBCB "tubulin-binding cofactor B" [Drosophila melanogaster (taxid:7227)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 74/240 (30%), Positives = 127/240 (52%)

Query:    14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTD 73
             + + V++S+  + + +V+    ++V  +K KL    G    +M ++++   +T V+ + +
Sbjct:    40 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKG-DTCVSTMDN 98

Query:    74 NSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKE 133
             N   LG+Y+   G RLHV+D   S  T   +  D++ VEK+ +S+++Y +R  + R + +
Sbjct:    99 NDAQLGYYANSDGLRLHVVD---SFAT---FSFDSAPVEKFELSKDQYEQRTDSVRNYLK 152

Query:   134 -----KVLSQNPSAVENK--LSNNYMEDLCSNITVGDRCEVD-PG--AKRGVVKYVGQAE 183
                  K   +     E K  L    ++       +G RCEV  PG   +RG ++Y G  E
Sbjct:   153 INRMGKYNDEEMQQAEEKKRLQAEEIQKRAELCVLGGRCEVTVPGNPTRRGTIRYNGPLE 212

Query:   184 SIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 243
               + G ++G++YDEPLGK+NG   G  YF C P +G  V P  V VGD+P  D   +DE+
Sbjct:   213 GKS-GHFIGVEYDEPLGKNNGSFGGKAYFTCAPNYGGFVSPLSVTVGDFPPEDFNMDDEL 271

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005938 "cell cortex" evidence=IDA

GO:0035089 "establishment of apical/basal cell polarity" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0007309 "oocyte axis specification" evidence=IMP

GO:0072686 "mitotic spindle" evidence=IDA

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

CGD|CAL0005089 orf19.2828 [Candida albicans (taxid:5476)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 51/145 (35%), Positives = 89/145 (61%)

Query:   107 DTSLVEKYTISEEEYSKRDGTFRKFKE--KVLSQNPS--AVENKLSNNYMEDLCSNITVG 162
             D +   ++ +SEE+Y  R  +   +K+  K+   +P   +++ KL +   E     +++G
Sbjct:   125 DVAGFTEFQLSEEDYKTRQNSVLNWKKINKLGRFDPQFQSLQEKLHHE-TEMKLKTMSIG 183

Query:   163 DRCE---VDPGAKRGVVKYVGQAESIAPGF--WVGIQYDEPLGKHNGIVKGVRYFECPPL 217
              RC    ++   +RG+++++G+   +  G   WVGI++DEP+GK+NG + GV+ FEC P 
Sbjct:   184 SRCRLINIENNERRGIIRFIGKIMPLDNGENDWVGIEFDEPVGKNNGSIDGVKIFECKPN 243

Query:   218 HGAMVRPDKVKVGDYPERDPFEEDE 242
             HG+ VRP  V+VGD+PE DPF +D+
Sbjct:   244 HGSFVRPRLVEVGDFPELDPFADDD 268

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q20728	TBCB_CAEEL	No assigned EC number	0.4222	0.8683	0.9213	yes	no
Q9D1E6	TBCB_MOUSE	No assigned EC number	0.3991	0.8641	0.8606	yes	no
Q99426	TBCB_HUMAN	No assigned EC number	0.3862	0.8971	0.8934	yes	no
Q5E951	TBCB_BOVIN	No assigned EC number	0.4026	0.8724	0.8688	yes	no
Q54Z01	TBCB_DICDI	No assigned EC number	0.3636	0.9094	0.8185	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
pfam01302	67	pfam01302, CAP_GLY, CAP-Gly domain	7e-31
cd01789	84	cd01789, Alp11_N, Ubiquitin-like domain of Alp11 t	2e-30
smart01052	68	smart01052, CAP_GLY, Cytoskeleton-associated prote	2e-28
COG5244	669	COG5244, NIP100, Dynactin complex subunit involved	3e-12
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	0.002

>gnl|CDD|216424 pfam01302, CAP_GLY, CAP-Gly domain

 Score =  108 bits (272), Expect = 7e-31
 Identities = 41/68 (60%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 220
           VGDR EV  G +RG V+YVG     APG WVG++ DEP GK++G V GVRYFECPP +G 
Sbjct: 1   VGDRVEVLGGGRRGTVRYVGPVP-FAPGLWVGVELDEPRGKNDGSVDGVRYFECPPKYGI 59

Query: 221 MVRPDKVK 228
            VRP KV+
Sbjct: 60  FVRPSKVE 67

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Length = 67

>gnl|CDD|176384 cd01789, Alp11_N, Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

 Score =  108 bits (271), Expect = 2e-30
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALT 72
          +V + +T S   SFS + ++   +++  +K KL    GT  +SM L+L+D  +  V+ L 
Sbjct: 1  TVTVNITSSA-DSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLD 59

Query: 73 DNSRPLGFYSPLQGYRLHVIDLDPS 97
          D+   LG Y    G R+HVID+  +
Sbjct: 60 DDDALLGSYPVDDGCRIHVIDVSGT 84

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin. Length = 84

>gnl|CDD|214997 smart01052, CAP_GLY, Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network

 Score =  102 bits (256), Expect = 2e-28
 Identities = 44/69 (63%), Positives = 51/69 (73%), Gaps = 2/69 (2%)

Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPL-GKHNGIVKGVRYFECPPLHG 219
           VGDR EV  G +RG V+YVG     APG WVG++ DEPL GK++G VKGVRYFECPP HG
Sbjct: 1   VGDRVEVGGGGRRGTVRYVGPTPF-APGVWVGVELDEPLRGKNDGSVKGVRYFECPPKHG 59

Query: 220 AMVRPDKVK 228
             VRP KV+
Sbjct: 60  IFVRPSKVE 68

A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Length = 68

>gnl|CDD|227569 COG5244, NIP100, Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]

 Score = 65.5 bits (159), Expect = 3e-12
 Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
           S ++V DR  +  G K G V+++G+ +    G W+G++ D+P+GK++G V GVRYF C  
Sbjct: 2   SLLSVNDRVLL--GDKFGTVRFIGKTKF-KDGIWIGLELDDPVGKNDGSVNGVRYFHCKK 58

Query: 217 LHGAMVRPDKVKVGDYP 233
            HG  +RPD   + +  
Sbjct: 59  RHGIFIRPDDDSLLNGN 75

Length = 669

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 19 THSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPL 78
          T   L   + ++      +V  +K K+  K G       L +Y     K+     + + L
Sbjct: 1  TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRL-IYAG---KIL---KDDKTL 53

Query: 79 GFYSPLQGYRLHVIDL 94
            Y    G  LH++  
Sbjct: 54 SDYGIQDGSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	100.0
PF01302	69	CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytos	99.94
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	99.91
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.9
KOG0971	1243	consensus Microtubule-associated protein dynactin	99.78
COG5244	669	NIP100 Dynactin complex subunit involved in mitoti	99.77
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.63
KOG4568	664	consensus Cytoskeleton-associated protein and rela	99.58
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.4
PTZ00044	76	ubiquitin; Provisional	99.4
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.4
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.39
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.37
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.33
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.32
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.31
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.31
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.31
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.27
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.27
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.26
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.25
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.25
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.24
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.23
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.22
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.22
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.21
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.2
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.2
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.18
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.17
KOG4568	664	consensus Cytoskeleton-associated protein and rela	99.13
KOG3556	724	consensus Familial cylindromatosis protein [Genera	99.08
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.07
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	98.99
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	98.99
KOG0241	1714	consensus Kinesin-like protein [Cytoskeleton]	98.96
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	98.92
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	98.9
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	98.81
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	98.71
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	98.71
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	98.69
PLN02560	308	enoyl-CoA reductase	98.66
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	98.6
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	98.45
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.17
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	98.16
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.16
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	97.93
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	97.77
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	97.63
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	97.59
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	97.38
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	97.32
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	96.38
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	96.12
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	96.12
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	96.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.78
KOG4495	110	consensus RNA polymerase II transcription elongati	95.29
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	95.23
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	94.9
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	94.63
PF13019	162	Telomere_Sde2: Telomere stability and silencing	94.04
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	94.01
PTZ00243	1560	ABC transporter; Provisional	93.55
KOG1639	297	consensus Steroid reductase required for elongatio	93.53
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	93.06
PRK10708	62	hypothetical protein; Provisional	92.9
PF10781	62	DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSR	92.6
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	92.19
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	91.91
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	90.91
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	89.89
KOG4583	391	consensus Membrane-associated ER protein involved	89.43
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	89.25
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	89.13
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	88.56
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	88.34
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	87.98
COG5417	81	Uncharacterized small protein [Function unknown]	87.93
cd06411	78	PB1_p51 The PB1 domain is present in the p51 prote	87.1
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	86.56
PF08337	539	Plexin_cytopl: Plexin cytoplasmic RasGAP domain; I	86.14
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	83.62
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	82.39
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	81.58
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	80.53

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-70  Score=463.12  Aligned_cols=225  Identities=45%  Similarity=0.790  Sum_probs=198.7

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      +|.|+|+|++.. +..|+|+++++||.+||.||+..||+++++|+|+|++.+++.+..|+++++.|++|+..||.+|||+
T Consensus         1 ~v~v~Iss~~~~-~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi   79 (234)
T KOG3206|consen    1 MVRVVISSSLND-FRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI   79 (234)
T ss_pred             CeEEEEeccccc-chhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence            589999877554 4899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCcccCCCccccCCcceeeecCHHHHhcchhhHHHHHHHhhc--CCCchhhhcc----ccchhhhhcCCCCCCCEEE
Q 026104           93 DLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLS--QNPSAVENKL----SNNYMEDLCSNITVGDRCE  166 (243)
Q Consensus        93 D~~p~s~~~~~~l~d~s~veky~msee~Y~~r~dtvr~~kk~~~~--~~p~~~~~~~----~~~~~~~~~~~~~vG~rv~  166 (243)
                      |.++.|+++   ++|+|.||||+||+|+|.+|+||||+||++++.  ||.+...++.    +....+.....+.||.||+
T Consensus        80 D~~~~~~~~---~~d~s~veky~iSee~Y~qRtdSvr~~kk~~~~gryn~~~~~q~ea~~~~~~~e~~~~~~i~vG~rCe  156 (234)
T KOG3206|consen   80 DSNAQSISN---TEDESIVEKYEISEEDYLQRTDSVRRFKKKHGYGRYNAEEQAQAEAEAKQDLAEERAQATIAVGRRCE  156 (234)
T ss_pred             ecCcccccc---ccccccceeeecCHHHHhhhhHHHHHHHHHhcccccchhhhhHHHHHhHHHHHHHHHhhccccCCeeE
Confidence            999988753   899999999999999999999999999999875  5544322111    1111112233499999999


Q ss_pred             Ec-CC--CceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCCCCCCCCCCCC
Q 026104          167 VD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI  243 (243)
Q Consensus       167 v~-~~--~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~~~d~~~~dE~  243 (243)
                      |. ++  +|||+|||+|++++ ++|+||||++|||+|||||+++|+|||+|+|+||.||+|..|++|||||.| |++|||
T Consensus       157 Vtv~G~~~Rrg~vrYvG~~~~-k~G~wiGVeydEplGKnDGsv~G~ryF~c~p~yGgfVrP~~V~VgdfpeeD-~~~DEi  234 (234)
T KOG3206|consen  157 VTVPGQAPRRGTVRYVGPLEF-KPGYWIGVEYDEPLGKNDGSVNGKRYFECAPKYGGFVRPRAVTVGDFPEED-FSDDEI  234 (234)
T ss_pred             EecCCCCCcceEEEEecccCC-CCceEEEEecCCccccCCCcccceEeeecCCccCCccccceeeecCCChhh-cccccC
Confidence            96 55  69999999999998 999999999999999999999999999999999999999999999999988 888887

>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain

Probab=99.94  E-value=9.2e-27  Score=169.01  Aligned_cols=68  Identities=59%  Similarity=1.205  Sum_probs=60.5

Q ss_pred             CCCEEEEc-CCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcc
Q 026104          161 VGDRCEVD-PGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK  228 (243)
Q Consensus       161 vG~rv~v~-~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  228 (243)
                      ||+||+|. +..++|+|||+|+++..++|.|+|||||+|.|+|||+++|+|||+|+|+||+||++++|+
T Consensus         1 VG~rV~v~~~~~~~G~vryiG~~~~~~~g~~vGVEld~~~G~~dGt~~G~rYF~c~~~~G~Fv~~~~v~   69 (69)
T PF01302_consen    1 VGDRVRVDDPGGRRGTVRYIGPVPGFKSGIWVGVELDEPRGKNDGTVKGKRYFECPPNHGIFVRPSKVE   69 (69)
T ss_dssp             TTSEEEESSTTTEEEEEEEEEE-SSSSSSEEEEEEESSSTSSBSSEETTEESS-SSTTTEEEEEGGGE-
T ss_pred             CCCEEEEeeCCCCEEEEEEEeeCCCCCCCEEEEEEEcCCCCCCCcEECCEEEeeeCCCCEEEecHHHCC
Confidence            79999993 358999999999999547899999999999999999999999999999999999999885

The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=99.91  E-value=1.6e-24  Score=163.32  Aligned_cols=86  Identities=38%  Similarity=0.574  Sum_probs=75.5

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEE-cCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY-DDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~-~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      +|+|+|||++...++.|+||+++|||++||+||+.+||+||++|+|.++ +.++..+..+++|+++|++||+++|++|||
T Consensus         1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V   80 (87)
T PF14560_consen    1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV   80 (87)
T ss_dssp             EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred             CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence            5899999998877899999999999999999999999999999999999 567778888999999999999999999999


Q ss_pred             eecCCCc
Q 026104           92 IDLDPSS   98 (243)
Q Consensus        92 vD~~p~s   98 (243)
                      +|++|+|
T Consensus        81 ~D~~p~s   87 (87)
T PF14560_consen   81 VDTNPSS   87 (87)
T ss_dssp             EE-T---
T ss_pred             EeCCCCC
Confidence            9999976

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.90  E-value=9.7e-24  Score=158.52  Aligned_cols=84  Identities=33%  Similarity=0.536  Sum_probs=77.5

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      +|+|+|+++. +.++.|+||+++|||++||+||+.+||+||+.|+|+++++.+..++.|++|+++|++|++++|++|||+
T Consensus         1 ~v~v~i~~~~-~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv   79 (84)
T cd01789           1 TVTVNITSSA-DSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI   79 (84)
T ss_pred             CEEEEEEeCC-CceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence            4789998775 678999999999999999999999999999999999998887777778999999999999999999999


Q ss_pred             ecCCC
Q 026104           93 DLDPS   97 (243)
Q Consensus        93 D~~p~   97 (243)
                      |++|.
T Consensus        80 D~~p~   84 (84)
T cd01789          80 DVSGT   84 (84)
T ss_pred             eCCCC
Confidence            99984

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=99.78  E-value=1.5e-19  Score=179.10  Aligned_cols=73  Identities=47%  Similarity=0.805  Sum_probs=68.7

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCccc
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV  229 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  229 (243)
                      ...++||.||+|..++.+|+|.|||.+.| ..|.||||-||||.||||||++|.+||+|++|||+|||++.|.+
T Consensus         3 ~r~lkvG~RVevtgknl~G~VayvG~T~F-A~G~WvGVvLDep~GKNnGsVqg~qYF~Cd~ncG~FVr~sq~r~   75 (1243)
T KOG0971|consen    3 PRSLKVGTRVEVTGKNLQGTVAYVGQTQF-AEGKWVGVVLDEPKGKNNGSVQGVQYFECDENCGVFVRSSQVRE   75 (1243)
T ss_pred             CccccccceEEeccCCccceEEEeccccc-ccCceEEEEeccccCCCCCcccceeeEecCCCcceEeehhhhHH
Confidence            45799999999986688999999999999 89999999999999999999999999999999999999999654

>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]

Probab=99.77  E-value=2.6e-19  Score=168.15  Aligned_cols=67  Identities=40%  Similarity=0.916  Sum_probs=63.0

Q ss_pred             CCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCc
Q 026104          158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV  227 (243)
Q Consensus       158 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v  227 (243)
                      -+.|||||.|.  +..|+|||+|.+.+ ..|+|+|||||.|+||||||++|+|||.|...||+|+||..=
T Consensus         3 ~lSv~D~Vll~--~~~g~VrfiG~t~f-~~GiW~GlELd~p~GkNDGSvnGvRYF~Ckk~~giFir~~~~   69 (669)
T COG5244           3 LLSVNDRVLLG--DKFGTVRFIGKTKF-KDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRPDDD   69 (669)
T ss_pred             eeecCCEEEec--cccceEEEeeeccc-ccceEEEEEecCCCCCCCCccCceEEEEecCCcceEEecCch
Confidence            47899999996  78999999999999 999999999999999999999999999999999999998653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=4.2e-16  Score=146.42  Aligned_cols=70  Identities=37%  Similarity=0.873  Sum_probs=65.2

Q ss_pred             CCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCC-CccCcEECCEEeeec-CCCceeeecCCCcccC
Q 026104          158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPL-GKHNGIVKGVRYFEC-PPLHGAMVRPDKVKVG  230 (243)
Q Consensus       158 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~-GkndGs~~G~rYF~c-~~~~G~Fv~~~~v~~g  230 (243)
                      .+.+|+|++|.  ...+||||+|.|++ -++-|+|||||+|. |||||+++|+|||.| .|+-|+|++|.+|..+
T Consensus         2 ~~~IG~RvkI~--~~~~Tvr~iG~V~g-~~~~w~GvEWDd~~RGKH~G~vdgk~YF~~q~P~GGSFik~~kV~~p   73 (505)
T KOG3207|consen    2 TMEIGTRVKIG--GEIATVRYIGEVEG-NNSKWYGVEWDDPVRGKHDGIVDGKRYFQTQHPNGGSFIKPGKVKFP   73 (505)
T ss_pred             ceeccceEEEc--CEEEEEEEEEEEcC-CCCcceeeEecCCCccccCceecceeeeeeecCCCccccCCccCCCC
Confidence            36799999996  79999999999999 56699999999997 999999999999999 8999999999999876

>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]

Probab=99.58  E-value=8e-16  Score=152.19  Aligned_cols=74  Identities=35%  Similarity=0.731  Sum_probs=68.4

Q ss_pred             hhcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCccc
Q 026104          154 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV  229 (243)
Q Consensus       154 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  229 (243)
                      .....+.||.+|.|. +..+|.|||+|++++ ..|+|+||+|++|.|||||+|.|+|||.|.+++|+|+++-+.+.
T Consensus        13 ~~~~~~~ig~~v~v~-~~~~G~v~y~G~t~f-~~G~w~GveL~~p~GKNdGsv~G~rYF~ce~~kgif~~~~~~t~   86 (664)
T KOG4568|consen   13 DDLGQFIIGRRVWVN-NVELGFVRYAGETDF-AKGIWAGVELLEPKGKNDGSVHGKRYFQCEPKKGIFFRQGRGTA   86 (664)
T ss_pred             hhhhhhhhcceEEec-CCcceeeeeccCccc-ccceeeceeeccccCCCCcccchhhhhccccccceeeccccccc
Confidence            445678999999997 689999999999999 99999999999999999999999999999999999998877654

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.40  E-value=8.5e-13  Score=95.71  Aligned_cols=72  Identities=18%  Similarity=0.284  Sum_probs=62.0

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|.|+.  +.++..+++++++.||++||++|+..+|+||+.|+|.+   +|+.   | +|+.+|++|++++|++||++=
T Consensus         1 m~i~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~---~g~~---L-~d~~tl~~~~i~~g~~i~l~~   71 (76)
T cd01806           1 MLIKVKT--LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQ---M-NDDKTAADYKLEGGSVLHLVL   71 (76)
T ss_pred             CEEEEEe--CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEE---CCeE---c-cCCCCHHHcCCCCCCEEEEEE
Confidence            3577763  44567889999999999999999999999999999997   5776   3 677899999999999999985


Q ss_pred             c
Q 026104           94 L   94 (243)
Q Consensus        94 ~   94 (243)
                      .
T Consensus        72 ~   72 (76)
T cd01806          72 A   72 (76)
T ss_pred             E
Confidence            3

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>PTZ00044 ubiquitin; Provisional

Probab=99.40  E-value=8.7e-13  Score=96.21  Aligned_cols=71  Identities=20%  Similarity=0.301  Sum_probs=61.8

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|+  .+.+....+++++++||++||++|+..+|+||++|+|++   +|+.   | +|+.+|++|++++|++||++=
T Consensus         1 m~i~vk--~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~---L-~d~~~l~~~~i~~~~~i~l~~   71 (76)
T PTZ00044          1 MQILIK--TLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIY---SGKQ---M-SDDLKLSDYKVVPGSTIHMVL   71 (76)
T ss_pred             CEEEEE--eCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEE---c-cCCCcHHHcCCCCCCEEEEEE
Confidence            357787  345567889999999999999999999999999999997   6776   3 588899999999999999974

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.40  E-value=9.4e-13  Score=94.52  Aligned_cols=71  Identities=18%  Similarity=0.309  Sum_probs=61.9

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      |+|+|+.  +.+....+++++++||++||++|+..+|+||+.|+|.+   +|+.    .+|+.+|++|++++|++||++-
T Consensus         1 i~i~vk~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~----L~d~~~L~~~~i~~~~~l~l~~   71 (72)
T cd01809           1 IEIKVKT--LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY---SGRV----LKDDETLSEYKVEDGHTIHLVK   71 (72)
T ss_pred             CEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCEE----CCCcCcHHHCCCCCCCEEEEEe
Confidence            5788874  44557889999999999999999999999999999998   5764    4678999999999999999974

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.39  E-value=1.3e-12  Score=95.66  Aligned_cols=71  Identities=15%  Similarity=0.146  Sum_probs=62.1

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      +|.|+|+  ++.++...++++++.||++||++|+...|+||+.|||++   .|+.    .+|+++|++||+++|++||+-
T Consensus         1 ~~~i~vk--t~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~---~Gk~----L~D~~tL~~ygi~~~stv~l~   71 (73)
T cd01791           1 MIEVVCN--DRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKK---WYTI----FKDHISLGDYEIHDGMNLELY   71 (73)
T ss_pred             CEEEEEE--CCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEe---CCcC----CCCCCCHHHcCCCCCCEEEEE
Confidence            4778887  455678888999999999999999999999999999998   4764    477889999999999999984

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.37  E-value=1.6e-12  Score=93.31  Aligned_cols=69  Identities=19%  Similarity=0.270  Sum_probs=60.7

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      |+|.|+++   ++..++++++++||.+||++|+..+|+||+.|+|.+   .|+.   | +|+++|++|++++|++|||+
T Consensus         1 i~i~vk~~---g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~---l-~d~~~L~~~~i~~g~~l~v~   69 (71)
T cd01812           1 IRVRVKHG---GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF---KGKE---R-DDAETLDMSGVKDGSKVMLL   69 (71)
T ss_pred             CEEEEEEC---CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEee---CCcc---c-CccCcHHHcCCCCCCEEEEe
Confidence            57888865   457889999999999999999999999999999998   4665   3 57789999999999999986

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.33  E-value=3.8e-12  Score=92.86  Aligned_cols=68  Identities=19%  Similarity=0.137  Sum_probs=59.8

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      ++|+|+.  .  ....+.++++.||++||++|+..+|||+++|+|++   .|+.    .+|+.+|++|+++++++||++
T Consensus         1 mqi~vk~--~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~---~Gk~----L~D~~tL~~~~i~~~~tl~l~   68 (74)
T cd01793           1 MQLFVRA--Q--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLL---AGVP----LEDDATLGQCGVEELCTLEVA   68 (74)
T ss_pred             CEEEEEC--C--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEE---CCeE----CCCCCCHHHcCCCCCCEEEEE
Confidence            4678874  2  35678889999999999999999999999999999   6876    368899999999999999997

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.32  E-value=4.2e-12  Score=93.50  Aligned_cols=60  Identities=15%  Similarity=0.149  Sum_probs=53.0

Q ss_pred             ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCC-CCcEEEEe
Q 026104           26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPL-QGYRLHVI   92 (243)
Q Consensus        26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~-dg~~IhVv   92 (243)
                      ....+.+++++||++||+||+.++||||++||| +   .|+.   |.+|+++|++|+++ +|.++|+-
T Consensus        13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~---~G~~---L~dD~~tL~~ygi~~~g~~~~l~   73 (75)
T cd01799          13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-V---IGQR---LARDQETLYSHGIRTNGDSAFLY   73 (75)
T ss_pred             CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-E---cCCe---eCCCcCCHHHcCCCCCCCEEEEE
Confidence            356788999999999999999999999999999 6   4666   45788999999999 88999873

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.31  E-value=3.7e-12  Score=93.56  Aligned_cols=65  Identities=18%  Similarity=0.259  Sum_probs=57.4

Q ss_pred             CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeec
Q 026104           23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   94 (243)
Q Consensus        23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~   94 (243)
                      +.+...++.+++++||++||++|+..+||||++|+|++   .|+.    .+|+++|++|++++|++|||+=.
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~---~G~~----L~d~~tL~~~~i~~g~~l~v~~~   69 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQY---EGIF----IKDSNSLAYYNLANGTIIHLQLK   69 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCEE----cCCCCcHHHcCCCCCCEEEEEEe
Confidence            45567888999999999999999999999999999998   4654    46789999999999999999753

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.31  E-value=6.5e-12  Score=91.57  Aligned_cols=71  Identities=17%  Similarity=0.205  Sum_probs=61.5

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|+.  +.+....+.++++.||++||++|+..+|+|+++|+|++   .|+.   | +|+.+|++|+++++++||++=
T Consensus         1 m~i~vk~--~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~---~G~~---L-~d~~~L~~~~i~~~~~l~l~~   71 (74)
T cd01807           1 MFLTVKL--LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLF---KGKA---L-ADDKRLSDYSIGPNAKLNLVV   71 (74)
T ss_pred             CEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEE---C-CCCCCHHHCCCCCCCEEEEEE
Confidence            3677773  44567778899999999999999999999999999998   6877   3 678999999999999999984

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01803 Ubiquitin Ubiquitin

Probab=99.31  E-value=6.3e-12  Score=91.11  Aligned_cols=71  Identities=20%  Similarity=0.261  Sum_probs=60.7

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|.  .+.++...+.+++++||++||++|+..+|+||+.|+|.+   +|+.    .+|+.+|++|++++|++||++=
T Consensus         1 m~i~v~--~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~---~g~~----L~d~~~L~~~~i~~~~~i~l~~   71 (76)
T cd01803           1 MQIFVK--TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL   71 (76)
T ss_pred             CEEEEE--cCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEE---CCEE----CCCCCcHHHcCCCCCCEEEEEE
Confidence            357776  344566778999999999999999999999999999997   5765    3678899999999999999974

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.27  E-value=1.3e-11  Score=91.43  Aligned_cols=71  Identities=11%  Similarity=0.130  Sum_probs=60.3

Q ss_pred             EEEEEEeCCCCCce-eEEE-cCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           14 VLLRVTHSNLKSFS-ADVR-FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        14 v~v~It~s~~~~~~-~e~r-~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      ++|+|+  ++.++. ..+. +++++||++||++|+..+|+|+++|||++   .|+.    .+|+.+|++||+++|++||+
T Consensus         1 M~I~vk--~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~---~Gk~----L~D~~tL~~y~i~~~~~i~l   71 (78)
T cd01797           1 MWIQVR--TMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFY---RGKQ----MEDGHTLFDYNVGLNDIIQL   71 (78)
T ss_pred             CEEEEE--cCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEe---CCEE----CCCCCCHHHcCCCCCCEEEE
Confidence            367787  345554 4674 78999999999999999999999999998   6876    37899999999999999999


Q ss_pred             ee
Q 026104           92 ID   93 (243)
Q Consensus        92 vD   93 (243)
                      .=
T Consensus        72 ~~   73 (78)
T cd01797          72 LV   73 (78)
T ss_pred             EE
Confidence            64

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.27  E-value=1e-11  Score=92.30  Aligned_cols=72  Identities=18%  Similarity=0.063  Sum_probs=62.5

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhC--CCCCceEEEEEcCCCCeeeecCCCCCccCCCC--CCCCcEE
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCG--TSVNSMSLELYDDTNTKVAALTDNSRPLGFYS--PLQGYRL   89 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tG--ipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~--i~dg~~I   89 (243)
                      |+|+|++++...+..++.+++++||.+||++|+...+  .+|++|||++   .|+.    ++|+.+|++|.  +.+|.+|
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy---~GKi----LkD~~tL~~~~~~~~~~~ti   74 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIY---SGKL----LPDHLKLRDVLRKQDEYHMV   74 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEE---cCee----ccchhhHHHHhhcccCCceE
Confidence            7899998776655677888999999999999999885  4579999999   6986    37889999996  9999999


Q ss_pred             EEe
Q 026104           90 HVI   92 (243)
Q Consensus        90 hVv   92 (243)
                      |+|
T Consensus        75 HLV   77 (79)
T cd01790          75 HLV   77 (79)
T ss_pred             EEE
Confidence            997

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.26  E-value=2.2e-11  Score=94.83  Aligned_cols=74  Identities=23%  Similarity=0.231  Sum_probs=64.9

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      ...++|+|+  .+.+....+.++++.||++||++|+..+|+|+++|+|++   +|+.    .+|+.+|++|++++|++||
T Consensus        25 ~~~M~I~Vk--~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~---~Gk~----L~D~~tL~dy~I~~~stL~   95 (103)
T cd01802          25 YDTMELFIE--TLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIW---NNME----LEDEYCLNDYNISEGCTLK   95 (103)
T ss_pred             CCCEEEEEE--cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEE---CCEE----CCCCCcHHHcCCCCCCEEE
Confidence            346899998  455667788999999999999999999999999999998   6876    3788999999999999999


Q ss_pred             Eee
Q 026104           91 VID   93 (243)
Q Consensus        91 VvD   93 (243)
                      ++=
T Consensus        96 l~~   98 (103)
T cd01802          96 LVL   98 (103)
T ss_pred             EEE
Confidence            974

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.25  E-value=1.5e-11  Score=89.20  Aligned_cols=63  Identities=13%  Similarity=0.075  Sum_probs=56.8

Q ss_pred             CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      +.++...+.++++.||.+||++|+..+|+|+++|+|++   .|+.    .+|+.+|++|++++|++|||+
T Consensus         6 ~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~---~G~~----L~D~~~l~~~~i~~~~tv~~~   68 (70)
T cd01794           6 STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFF---SGKL----LTDKTRLQETKIQKDYVVQVI   68 (70)
T ss_pred             CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE---CCeE----CCCCCCHHHcCCCCCCEEEEE
Confidence            44567788899999999999999999999999999998   6876    478899999999999999996

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.25  E-value=1.8e-11  Score=88.14  Aligned_cols=68  Identities=13%  Similarity=0.185  Sum_probs=59.1

Q ss_pred             EEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           16 LRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        16 v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      |+|+  .+.+....+.++++.||++||++|+..+|+|+++|+|++   .|+.   | +|+.+|++|++++|++|||+
T Consensus         1 i~vk--~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~---~G~~---L-~d~~~l~~~~i~~~stl~l~   68 (70)
T cd01798           1 VYVR--TNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIF---AGKE---L-RNTTTIQECDLGQQSILHAV   68 (70)
T ss_pred             CEEE--cCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            3555  345567778899999999999999999999999999998   6877   3 77899999999999999997

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.24  E-value=1.7e-11  Score=88.98  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=55.4

Q ss_pred             CCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           24 KSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        24 ~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      .+....+.+++++||++||++|+..+|+|+++|+|++   .|+.   |.++..+|++|++++|+.||+-
T Consensus         8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~---~Gk~---L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIY---NGRE---LVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE---CCeE---ccCCcccHHHcCCCCCCEEEEe
Confidence            3456788999999999999999999999999999998   6887   4455689999999999999973

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.23  E-value=2.6e-11  Score=87.63  Aligned_cols=69  Identities=16%  Similarity=0.264  Sum_probs=59.1

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      |+|+|++.  .+. .++.+++++||++||++|+..+|+|+++|+|.+   +|+.   | +|+.+|.+||+++|++||++
T Consensus         1 ~~i~vk~~--~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~---~Gk~---L-~d~~tL~~~~i~~~stl~l~   69 (71)
T cd01808           1 IKVTVKTP--KDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF---AGKI---L-KDTDTLTQHNIKDGLTVHLV   69 (71)
T ss_pred             CEEEEEcC--CCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE---CCeE---c-CCCCcHHHcCCCCCCEEEEE
Confidence            46778743  444 478889999999999999999999999999988   6776   3 67789999999999999986

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=8e-12  Score=87.36  Aligned_cols=64  Identities=19%  Similarity=0.314  Sum_probs=59.6

Q ss_pred             CCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           22 NLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        22 ~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      .++.+..|+.++|..+|+.+|+++++..||||.+|||++   .|++    .+|+.+-..|++.-|+.+|++
T Consensus         7 tLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~---~gkq----m~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---AGKQ----MNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             eeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhh---cccc----ccccccHHHhhhccceeEeeC
Confidence            577788999999999999999999999999999999999   6887    478999999999999999985

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.22  E-value=3.7e-11  Score=88.78  Aligned_cols=71  Identities=17%  Similarity=0.235  Sum_probs=60.5

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|+.  +.++..++.++++.||++||++|+..+|+|++.|||++   .|+.   | +|+ +|++||+++|++|||+=
T Consensus         2 m~I~Vk~--~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~---~Gk~---L-~d~-~L~~~gi~~~~~i~l~~   71 (78)
T cd01804           2 MNLNIHS--TTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLH---RETR---L-SSG-KLQDLGLGDGSKLTLVP   71 (78)
T ss_pred             eEEEEEE--CCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEE---CCcC---C-CCC-cHHHcCCCCCCEEEEEe
Confidence            5788873  44567788999999999999999999999999999998   5775   3 455 89999999999999985


Q ss_pred             c
Q 026104           94 L   94 (243)
Q Consensus        94 ~   94 (243)
                      +
T Consensus        72 ~   72 (78)
T cd01804          72 T   72 (78)
T ss_pred             e
Confidence            3

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.21  E-value=4.6e-11  Score=87.62  Aligned_cols=72  Identities=10%  Similarity=0.004  Sum_probs=60.7

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      |+|.|+++.   ...+++++++.||++||++|+..||+||++|+|.+..-.|+.    ..|+.+|++|++++|..|+|+
T Consensus         1 ~~i~vk~~g---~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~----l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVKWGG---QEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKP----AEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEEECC---EEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCc----CCCCcCHHHcCCCCCCEEEEE
Confidence            467888654   367889999999999999999999999999999972113654    468899999999999999986

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.20  E-value=4.4e-11  Score=87.23  Aligned_cols=69  Identities=19%  Similarity=0.261  Sum_probs=59.3

Q ss_pred             EEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           16 LRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        16 v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      |+|+  ++.+....+.++++.||.+||++|+..+|+|+++|+|++   .|+.   | .|+++|++|+++++++||++=
T Consensus         1 i~vk--~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~---~G~~---L-~D~~tL~~~~i~~~~tl~l~~   69 (74)
T cd01810           1 ILVR--NDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSF---EGRP---M-EDEHPLGEYGLKPGCTVFMNL   69 (74)
T ss_pred             CEEE--CCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence            4566  345567778889999999999999999999999999998   6877   3 577999999999999999863

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.20  E-value=4.7e-11  Score=88.47  Aligned_cols=73  Identities=19%  Similarity=0.141  Sum_probs=61.5

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|+.  +.++...+.++++.||.+||++|+..+|+|++.|||.+.. .|+.    .+|+.+|++||+++|++|||+=
T Consensus         3 ~~i~Vk~--~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~-~G~~----L~D~~tL~~~gi~~gs~l~l~~   75 (80)
T cd01792           3 WDLKVKM--LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD-SREV----LQDGVPLVSQGLGPGSTVLLVV   75 (80)
T ss_pred             eEEEEEe--CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc-CCCC----CCCCCCHHHcCCCCCCEEEEEE
Confidence            7888873  4556778899999999999999999999999999995321 5665    3677899999999999999974

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.18  E-value=6.4e-11  Score=84.55  Aligned_cols=63  Identities=19%  Similarity=0.304  Sum_probs=57.6

Q ss_pred             CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      +++...++.++++.||.+||++|+..+|+|++.|+|.+   .|+.   | +|+.+|++|++.+|++|||+
T Consensus         3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~---~G~~---L-~d~~tL~~~~i~~~~~I~l~   65 (69)
T PF00240_consen    3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY---NGKE---L-DDDKTLSDYGIKDGSTIHLV   65 (69)
T ss_dssp             TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE---TTEE---E-STTSBTGGGTTSTTEEEEEE
T ss_pred             CCCcEEEEEECCCCCHHHhhhhcccccccccccceeee---eeec---c-cCcCcHHHcCCCCCCEEEEE
Confidence            34567889999999999999999999999999999999   6876   3 89999999999999999986

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.17  E-value=1.1e-10  Score=85.25  Aligned_cols=74  Identities=16%  Similarity=0.157  Sum_probs=62.4

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCC--CCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGT--SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGi--pp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      ++|+|+.  +.+....+.++++.||.+||++|+..+|+  |++.|+|.+   +|+.   | +|+.+|++|++++|++|++
T Consensus         1 m~i~vk~--~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~---~G~~---L-~d~~~L~~~~i~~~~~i~~   71 (77)
T cd01805           1 MKITFKT--LKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY---SGKI---L-KDDTTLEEYKIDEKDFVVV   71 (77)
T ss_pred             CEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE---CCEE---c-cCCCCHHHcCCCCCCEEEE
Confidence            4677774  44556778899999999999999999999  999999998   5776   3 6779999999999999998


Q ss_pred             eecCC
Q 026104           92 IDLDP   96 (243)
Q Consensus        92 vD~~p   96 (243)
                      +=..|
T Consensus        72 ~~~~~   76 (77)
T cd01805          72 MVSKP   76 (77)
T ss_pred             EEecC
Confidence            75543

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]

Probab=99.13  E-value=1.1e-11  Score=123.06  Aligned_cols=77  Identities=39%  Similarity=0.719  Sum_probs=72.3

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCCC
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPE  234 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~~  234 (243)
                      ...+.+|+|+.+. +...|++||.|.+.+ ..|-|+|||||+|+|+|||++.+++||+|++.||.|.+..+|.-+.++.
T Consensus       152 ~~~l~v~dr~l~~-gq~~~~~r~~~~t~f-a~g~w~~~elde~~~~~d~sv~k~~~~~~k~ky~~f~~v~kv~~~~~~~  228 (664)
T KOG4568|consen  152 MLGLRVGDRVLVG-GQKSGTLRYSGHTKF-ASGSWLGVELDEPVGKNDGSVGKVRYFQCKPKYGKFAPVQKVFKIEVTI  228 (664)
T ss_pred             ccccccccceeec-Ccccchhhhhccccc-cCCcccchhcccccccccccccccccccCcchhcchhHHHHHhhccccc
Confidence            4679999999997 789999999999999 9999999999999999999999999999999999999999998887764

>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]

Probab=99.08  E-value=1.9e-10  Score=109.88  Aligned_cols=80  Identities=24%  Similarity=0.507  Sum_probs=71.4

Q ss_pred             cCCCCCCCEEEEc-CC---CceeEEEEecccCCCCCccEEEEEEeCC-----CCccCcEECCEEeeecCCCceeeecCCC
Q 026104          156 CSNITVGDRCEVD-PG---AKRGVVKYVGQAESIAPGFWVGIQYDEP-----LGKHNGIVKGVRYFECPPLHGAMVRPDK  226 (243)
Q Consensus       156 ~~~~~vG~rv~v~-~~---~~~G~vryvG~~~~~~~g~w~GVelDep-----~GkndGs~~G~rYF~c~~~~G~Fv~~~~  226 (243)
                      ...++||+-|+|. ++   ..+|+|||||..|. ..|+|+|||+++.     .+..||++.|.|||+|..+...||+...
T Consensus       233 ~~~L~IGslveV~np~~~~~~ygvVrWIG~pP~-~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlftc~d~~a~Fv~~~s  311 (724)
T KOG3556|consen  233 ILNLKIGSLVEVENPETMRRVYGVVRWIGEPPE-ASGVLYGVEFEDETSQWPSSNQDGSSSGDRLFTCFDTNANFVMSGS  311 (724)
T ss_pred             cccceecceEEecCCccccccceeeEecccCCc-ccCceEeeeecCccccCccccccCcccCceeeeeccccceeeEcCC
Confidence            3469999999996 32   57999999999998 8999999999975     4789999999999999999999999999


Q ss_pred             cccC-CCCCCC
Q 026104          227 VKVG-DYPERD  236 (243)
Q Consensus       227 v~~g-~f~~~d  236 (243)
                      +++. .|..++
T Consensus       312 cs~d~rfa~l~  322 (724)
T KOG3556|consen  312 CSVDPRFARLY  322 (724)
T ss_pred             CCcCcccchhc
Confidence            9998 588766

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.07  E-value=1.3e-10  Score=89.44  Aligned_cols=82  Identities=13%  Similarity=0.202  Sum_probs=65.8

Q ss_pred             EEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeecCCCcccCCCccccC
Q 026104           29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDT  108 (243)
Q Consensus        29 e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~p~s~~~~~~l~d~  108 (243)
                      .+.++++.||++||.+|.+++|++|.+|+|++   +|+.   |.||.++|++||+.++++|++.-++|..--.  ..+|+
T Consensus        18 ~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~---dG~~---L~DDsrTLssyGv~sgSvl~LlideP~~d~~--~~~~~   89 (107)
T cd01795          18 ALLVSANQTLKELKIQIMHAFSVAPFDQNLSI---DGKI---LSDDCATLGTLGVIPESVILLKADEPIADYA--AMDDV   89 (107)
T ss_pred             eEEeCccccHHHHHHHHHHHhcCCcccceeee---cCce---eccCCccHHhcCCCCCCEEEEEecCCcccHH--HHHHH
Confidence            34578999999999999999999999999999   5773   7899999999999999999998878743211  14554


Q ss_pred             CcceeeecCHHHH
Q 026104          109 SLVEKYTISEEEY  121 (243)
Q Consensus       109 s~veky~msee~Y  121 (243)
                      -+|   -|+||-|
T Consensus        90 ~~~---~~~~~~~   99 (107)
T cd01795          90 MQV---CMPEEGF   99 (107)
T ss_pred             HHh---cCccccc
Confidence            444   5666654

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=98.99  E-value=4.9e-10  Score=82.47  Aligned_cols=54  Identities=19%  Similarity=0.305  Sum_probs=47.6

Q ss_pred             CCCCCHHHHHHHHHhHh--CCC-CCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           33 PLQMSVESVKDKLWRKC--GTS-VNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        33 ~~~~TV~~LK~KLe~~t--Gip-p~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      +-+.||.+||+||+..+  |++ +++|||++   .|+.    ++|+++|++|+|++|++||++-
T Consensus        18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy---~GKi----L~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIH---CGRK----LKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             CccCcHHHHHHHHHHhhccCCCChHHeEEEe---CCcC----CCCCCcHHHcCCCCCCEEEEEe
Confidence            45899999999999996  575 99999999   6886    3788999999999999999973

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>smart00213 UBQ Ubiquitin homologues

Probab=98.99  E-value=1.1e-09  Score=76.07  Aligned_cols=64  Identities=20%  Similarity=0.246  Sum_probs=54.5

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      ++|+|++..   ...+++++++.||++||++|+..+|+|++.|+|.+   .|+.   | .|+++|++|++++|+
T Consensus         1 ~~i~vk~~~---~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~---~g~~---L-~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD---GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY---KGKV---L-EDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC---ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCEE---C-CCCCCHHHcCCcCCC
Confidence            467887655   36788999999999999999999999999999998   5665   3 567999999999874

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>KOG0241 consensus Kinesin-like protein [Cytoskeleton]

Probab=98.96  E-value=3.6e-10  Score=113.87  Aligned_cols=69  Identities=29%  Similarity=0.433  Sum_probs=60.7

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  230 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  230 (243)
                      ..-+-.|.||.+. ....++|||+|+..|. +    |||||.|.|||||++.|++||.|.|+||+||+++++..-
T Consensus      1628 pew~~~ge~v~~~-~h~t~v~r~vg~tefq-~----gveld~p~gkndgs~gg~qyfrc~p~~g~~vr~s~~~~~ 1696 (1714)
T KOG0241|consen 1628 PEWRGFGERVVTV-EHTTNVLRDVGFTEFQ-G----GVELDDPDGKNDGSAGGLQYFRCLPNKGGGVRVSDGLHH 1696 (1714)
T ss_pred             chhhhcCceeEEe-ecccceeeecchhhcc-C----cccccCCCCCcCccccceeEEeecCCCCCcccchhhccC
Confidence            3457789999986 3678899999999993 3    999999999999999999999999999999999987643

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=98.92  E-value=3.8e-09  Score=74.33  Aligned_cols=62  Identities=19%  Similarity=0.242  Sum_probs=55.3

Q ss_pred             CceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           25 SFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        25 ~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++...+++++++||++||++|+..+|+|++.|+|.+   .|+.   | +|+.+|++|++.+++.|+|.+
T Consensus         7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~---~g~~---l-~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY---AGKI---L-KDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCcC---C-CCcCCHHHCCCCCCCEEEEEE
Confidence            456788999999999999999999999999999977   5665   3 678899999999999999986

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=98.90  E-value=9.1e-09  Score=77.52  Aligned_cols=75  Identities=13%  Similarity=0.191  Sum_probs=65.8

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      ..+..|.|+|.+  ..+..+.+++.++.|+..||++++...|+|+++|+|+|   +|+.+    +++.|+.+|++++|.+
T Consensus         7 ~~~~~i~I~v~~--~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f---~G~~L----~~~~T~~~l~m~d~d~   77 (87)
T cd01763           7 EISEHINLKVKG--QDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF---DGQRI----RDNQTPDDLGMEDGDE   77 (87)
T ss_pred             CCCCeEEEEEEC--CCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE---CCeEC----CCCCCHHHcCCCCCCE
Confidence            345578999974  45667889999999999999999999999999999999   78873    6788999999999999


Q ss_pred             EEEe
Q 026104           89 LHVI   92 (243)
Q Consensus        89 IhVv   92 (243)
                      |||+
T Consensus        78 I~v~   81 (87)
T cd01763          78 IEVM   81 (87)
T ss_pred             EEEE
Confidence            9997

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=2.6e-09  Score=88.09  Aligned_cols=70  Identities=19%  Similarity=0.275  Sum_probs=61.1

Q ss_pred             EEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        15 ~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      .|+|.  .++++..-+...++.||..+|+||+..+||||++|||++   .|+++    .|..+|++|+|+.-++||++=
T Consensus         2 ~ifVk--~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlif---ag~qL----edgrtlSDY~Iqkestl~l~l   71 (156)
T KOG0004|consen    2 QIFVK--TLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQL----EDGRTLSDYNIQKESTLHLVL   71 (156)
T ss_pred             ccchh--hccccceeeeecccccHHHHHHhhhcccCCCchhhhhhh---hhccc----ccCCccccccccccceEEEEE
Confidence            56776  355556777889999999999999999999999999999   78873    567999999999999999985

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.71  E-value=2.4e-08  Score=95.37  Aligned_cols=75  Identities=15%  Similarity=0.191  Sum_probs=67.4

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      +.|+|+|++...   ..+..++...||.+||++|..++++++++++|+|   .|+.    ++|+.+|..|+|+||.+||+
T Consensus        14 ~~irV~Vkt~~d---k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIf---aGrI----LKD~dTL~~~gI~Dg~TvHL   83 (493)
T KOG0010|consen   14 SLIRVTVKTPKD---KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIY---AGRI----LKDDDTLKQYGIQDGHTVHL   83 (493)
T ss_pred             ceeEEEEecCCc---ceeEecccchHHHHHHHHHHHhcCCChhHeeeee---cCcc----ccChhhHHHcCCCCCcEEEE
Confidence            469999997654   5678889999999999999999999999999999   6986    37999999999999999999


Q ss_pred             eecCC
Q 026104           92 IDLDP   96 (243)
Q Consensus        92 vD~~p   96 (243)
                      |-..+
T Consensus        84 Vik~~   88 (493)
T KOG0010|consen   84 VIKSQ   88 (493)
T ss_pred             EeccC
Confidence            98765

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=2.7e-09  Score=83.01  Aligned_cols=64  Identities=19%  Similarity=0.266  Sum_probs=58.1

Q ss_pred             CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      +.++.+.+.+.|+.||..||+++...+||||++|+|++   +|++    .+|..+|+.||++.-++||++=
T Consensus         8 ~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~---~~k~----LED~~Tla~Y~i~~~~Tl~~~~   71 (128)
T KOG0003|consen    8 LTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLADYNIQKESTLHLVL   71 (128)
T ss_pred             eeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHh---cccc----cccCCcccccCccchhhhhhhH
Confidence            56667778889999999999999999999999999999   6876    3899999999999999999874

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=98.69  E-value=4.2e-08  Score=92.39  Aligned_cols=74  Identities=15%  Similarity=0.171  Sum_probs=63.9

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhC---CCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCG---TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tG---ipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      |+|+|+  ++.+...++.+++++||.+||++|+..+|   +|++.|||++   .|+.    ++|+++|.+|+|+++..|+
T Consensus         1 MkItVK--tl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy---~Gki----L~Dd~tL~dy~I~e~~~Iv   71 (378)
T TIGR00601         1 MTLTFK--TLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIY---SGKI----LSDDKTVREYKIKEKDFVV   71 (378)
T ss_pred             CEEEEE--eCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEE---CCEE----CCCCCcHHHcCCCCCCEEE
Confidence            468887  46667788999999999999999999999   9999999998   6876    3688899999999999888


Q ss_pred             EeecCC
Q 026104           91 VIDLDP   96 (243)
Q Consensus        91 VvD~~p   96 (243)
                      |.=..+
T Consensus        72 vmv~k~   77 (378)
T TIGR00601        72 VMVSKP   77 (378)
T ss_pred             EEeccC
Confidence            876543

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN02560 enoyl-CoA reductase

Probab=98.66  E-value=8.9e-08  Score=87.94  Aligned_cols=81  Identities=17%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             EEEEEeCCCCCcee---EEEcCCCCCHHHHHHHHHhHhCC-CCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           15 LLRVTHSNLKSFSA---DVRFPLQMSVESVKDKLWRKCGT-SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        15 ~v~It~s~~~~~~~---e~r~~~~~TV~~LK~KLe~~tGi-pp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      +|.|+..  +++..   ++.++++.||++||++|+...|+ +++.|||.+.+.+|+......+|+++|.+||+++|++|+
T Consensus         2 ~I~Vk~~--~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy   79 (308)
T PLN02560          2 KVTVVSR--SGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVV   79 (308)
T ss_pred             EEEEEcC--CCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEE
Confidence            4666632  23343   68889999999999999999997 899999999755554322234678899999999999999


Q ss_pred             EeecCCC
Q 026104           91 VIDLDPS   97 (243)
Q Consensus        91 VvD~~p~   97 (243)
                      |-|..|.
T Consensus        80 ~kDLGpQ   86 (308)
T PLN02560         80 FKDLGPQ   86 (308)
T ss_pred             EEeCCCc
Confidence            9999884

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=98.60  E-value=3e-08  Score=78.10  Aligned_cols=76  Identities=18%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHH-----hHhCCC--CCceEEEEEcCCCCeeeecCCCCCccCCCC---
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLW-----RKCGTS--VNSMSLELYDDTNTKVAALTDNSRPLGFYS---   82 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe-----~~tGip--p~~qrL~l~~~~g~~~~~l~~d~~~L~~y~---   82 (243)
                      .|.|....++-+. .--.+|+++.||++||+||+     .++|+|  +++|+|++   .|+.    ++|+++|++|+   
T Consensus         4 ~~e~kfrl~dg~d-igp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy---sGKi----LeD~~TL~d~~~p~   75 (113)
T cd01814           4 QIEIKFRLYDGSD-IGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS---AGKI----LENSKTVGECRSPV   75 (113)
T ss_pred             cEEEEEEccCCCc-cCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEe---CCee----cCCCCcHHHhCCcc
Confidence            3555555444321 34578999999999999999     677888  99999999   7987    37899999999   


Q ss_pred             ---CCCCcEEEEeecCC
Q 026104           83 ---PLQGYRLHVIDLDP   96 (243)
Q Consensus        83 ---i~dg~~IhVvD~~p   96 (243)
                         +....++||+=-.|
T Consensus        76 g~~~~~~~TmHvvlr~~   92 (113)
T cd01814          76 GDIAGGVITMHVVVQPP   92 (113)
T ss_pred             cccCCCceEEEEEecCC
Confidence               88889999986433

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=98.45  E-value=6.7e-07  Score=64.27  Aligned_cols=70  Identities=16%  Similarity=0.216  Sum_probs=60.1

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCC-CceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp-~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      |+|.|++.+  +.....++.++.|++.|++++....|+|+ +.++|.|   +|+.+    +.+.|+.+|++++|..|+|+
T Consensus         1 I~i~v~~~~--~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f---dG~~L----~~~~T~~~~~ied~d~Idv~   71 (72)
T PF11976_consen    1 ITIKVRSQD--GKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF---DGKRL----DPNDTPEDLGIEDGDTIDVI   71 (72)
T ss_dssp             EEEEEEETT--SEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE---TTEEE-----TTSCHHHHT-STTEEEEEE
T ss_pred             CEEEEEeCC--CCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEE---CCEEc----CCCCCHHHCCCCCCCEEEEE
Confidence            678887654  34788899999999999999999999999 9999999   78873    67789999999999999985

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.17  E-value=1e-05  Score=59.22  Aligned_cols=68  Identities=15%  Similarity=0.193  Sum_probs=60.9

Q ss_pred             eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeecCCC
Q 026104           27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS   97 (243)
Q Consensus        27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~p~   97 (243)
                      ...++++|.-+|-.||+||..--|++- .|||.|..+.|+..  +..+..+|++|||=....|.|.+|.|.
T Consensus        12 dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rq--lL~s~~sLA~yGiFs~~~i~lleT~p~   79 (80)
T cd01811          12 DWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQ--LLSSRKSLADYGIFSKTNICLLETFPP   79 (80)
T ss_pred             ceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccc--cccccccHhhhcceeccEEEEEecCCC
Confidence            467899999999999999999999987 99999999887653  568999999999999999999999874

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=98.16  E-value=3e-06  Score=77.66  Aligned_cols=72  Identities=18%  Similarity=0.157  Sum_probs=63.8

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhC--CCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCG--TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tG--ipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      ++|+|+  +|++..+++++.|+.||.++|.||+...|  .|++.|+|++   +|+.    +.|+.+++.|++.+..-|.|
T Consensus         1 m~lt~K--tL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy---~Gki----L~D~~tv~Eykv~E~~fiVv   71 (340)
T KOG0011|consen    1 MKLTVK--TLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIY---SGKI----LKDETTVGEYKVKEKKFIVV   71 (340)
T ss_pred             CeeEee--eccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeee---ccee----ccCCcchhhhccccCceEEE
Confidence            467887  78888999999999999999999999999  9999999999   7886    48999999999999977666


Q ss_pred             eec
Q 026104           92 IDL   94 (243)
Q Consensus        92 vD~   94 (243)
                      .=+
T Consensus        72 Mls   74 (340)
T KOG0011|consen   72 MLS   74 (340)
T ss_pred             EEe
Confidence            443

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.16  E-value=5.4e-06  Score=60.87  Aligned_cols=57  Identities=23%  Similarity=0.198  Sum_probs=48.0

Q ss_pred             CCCCCHHHHHHHHHhHhCC-CCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeec
Q 026104           33 PLQMSVESVKDKLWRKCGT-SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   94 (243)
Q Consensus        33 ~~~~TV~~LK~KLe~~tGi-pp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~   94 (243)
                      +++.||.+||..|+...+. +++.|||.+. ..|+.   | .|+.+|.+||+.+|.+|||-|.
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~-~~g~~---L-~d~~tL~~~gv~~g~~lyvKDL   77 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLE-PKGKS---L-KDDDTLVDLGVGAGATLYVRDL   77 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeC-CCCcc---c-CCcccHhhcCCCCCCEEEEeeC
Confidence            7889999999999999875 7999999864 35655   3 5677899999999999999884

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=1.3e-05  Score=82.33  Aligned_cols=73  Identities=16%  Similarity=0.243  Sum_probs=65.3

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|.|+  +|..+..+.-+...+||.+||..|...+.|+...|||++   .|++    +.|++++..|+| ||-+|||+|
T Consensus         3 ~~v~vk--tld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~---~grv----l~~~k~vq~~~v-dgk~~hlve   72 (1143)
T KOG4248|consen    3 PNVLVK--TLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIY---QGRV----LQDDKKVQEYNV-DGKVIHLVE   72 (1143)
T ss_pred             cceeee--ecccceeEEEechHHHHHHHHHHHHHhcccccccceeee---ccee----eccchhhhhccC-CCeEEEeec
Confidence            457777  577788899999999999999999999999999999999   6887    379999999999 999999999


Q ss_pred             cCC
Q 026104           94 LDP   96 (243)
Q Consensus        94 ~~p   96 (243)
                      --|
T Consensus        73 rpp   75 (1143)
T KOG4248|consen   73 RPP   75 (1143)
T ss_pred             cCC
Confidence            654

>cd00196 UBQ Ubiquitin-like proteins

Probab=97.77  E-value=0.00011  Score=48.13  Aligned_cols=61  Identities=21%  Similarity=0.253  Sum_probs=51.2

Q ss_pred             ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ....+++++..|+.+||.+|...+|++++.|+|.+   .|..    ..+...+..|++.++.+|++..
T Consensus         8 ~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~---~~~~----~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           8 KTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLV---NGKI----LPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEE---CCeE----CCCCCcHHHcCCCCCCEEEEEe
Confidence            35678889999999999999999999999999988   4544    2455556799999999999875

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=97.63  E-value=7.1e-05  Score=55.75  Aligned_cols=75  Identities=17%  Similarity=0.206  Sum_probs=40.7

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      .+-|.|.+..-   ..-+.++++.|+++||+||...+++|+..|.|.........+  ..++.++|+++|++.|..|.+.
T Consensus         4 ~milRvrS~dG---~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l--~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    4 SMILRVRSKDG---MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEEL--KSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             --EEEEE-SSE---EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCS--SS-TT-CCCCT---TT-EEE--
T ss_pred             cEEEEEECCCC---CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCccc--ccCCcCCHHHcCCCCccEEEEe
Confidence            35566665544   233457899999999999999999999999886532211222  1357899999999999988763

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=97.59  E-value=0.00038  Score=48.09  Aligned_cols=65  Identities=23%  Similarity=0.305  Sum_probs=54.6

Q ss_pred             CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeec
Q 026104           23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   94 (243)
Q Consensus        23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~   94 (243)
                      +.++.......+..+|..+|.+|+...|+++..|+|.+   .|+.    ..|+.+|.+|+|..+.++|+.-.
T Consensus         7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~---~~~~----l~d~~~l~~~~i~~~~~~~l~~~   71 (75)
T KOG0001|consen    7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIF---GGKP----LEDGRTLADYNIQEGSTLHLVLS   71 (75)
T ss_pred             cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEE---CCEE----CcCCCcHHHhCCCCCCEEEEEEe
Confidence            44456667788999999999999999999999999888   4544    35669999999999999998753

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=97.38  E-value=0.00083  Score=53.06  Aligned_cols=72  Identities=15%  Similarity=0.254  Sum_probs=49.6

Q ss_pred             EEEEEEeCCCCCc-eeEEEcCCCCCHHHHHHHHHhH-------hCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCC
Q 026104           14 VLLRVTHSNLKSF-SADVRFPLQMSVESVKDKLWRK-------CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQ   85 (243)
Q Consensus        14 v~v~It~s~~~~~-~~e~r~~~~~TV~~LK~KLe~~-------tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~d   85 (243)
                      |.|....  ..+. ..+.+|++++||.+||++|...       .=..++.+||++   .|+.    ++|+++|+++.+..
T Consensus         3 i~lkf~l--~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~---~Gri----L~d~~tL~~~~~~~   73 (111)
T PF13881_consen    3 IELKFRL--ADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIY---AGRI----LEDNKTLSDCRLPS   73 (111)
T ss_dssp             EEEEEEE--TTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE---TTEE----E-SSSBTGGGT--T
T ss_pred             EEEEEEE--eCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEe---CCee----cCCcCcHHHhCCCC
Confidence            5554442  2344 6789999999999999999743       234568999999   7986    37999999998776


Q ss_pred             Cc------EEEEeec
Q 026104           86 GY------RLHVIDL   94 (243)
Q Consensus        86 g~------~IhVvD~   94 (243)
                      |.      ++||+=.
T Consensus        74 ~~~~~~~~vmHlvvr   88 (111)
T PF13881_consen   74 GETPGGPTVMHLVVR   88 (111)
T ss_dssp             TSETT--EEEEEEE-
T ss_pred             CCCCCCCEEEEEEec
Confidence            54      6888864

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=97.32  E-value=0.00091  Score=52.95  Aligned_cols=49  Identities=14%  Similarity=0.003  Sum_probs=42.0

Q ss_pred             eEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104           28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP   83 (243)
Q Consensus        28 ~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i   83 (243)
                      .=..-.++.||.+||.+|+-++-.||++|||. .  ++.    +.+|+++|++||+
T Consensus        14 iF~dakes~tVlelK~~iegI~k~pp~dQrL~-k--d~q----vLeD~kTL~d~g~   62 (119)
T cd01788          14 IFTDAKESTTVYELKRIVEGILKRPPEDQRLY-K--DDQ----LLDDGKTLGDCGF   62 (119)
T ss_pred             EEeecCCcccHHHHHHHHHHHhcCChhHheee-c--Cce----eecccccHHHcCc
Confidence            33456799999999999999999999999998 3  443    3599999999999

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=96.38  E-value=0.0098  Score=44.37  Aligned_cols=48  Identities=10%  Similarity=0.160  Sum_probs=41.7

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCC
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT   66 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~   66 (243)
                      +|+|+.+-      .+-+|+++.++..+|.+||..+.++|++.++|++++.+..
T Consensus         4 vvKV~f~~------tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~   51 (80)
T cd06406           4 VVKVHFKY------TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASG   51 (80)
T ss_pred             EEEEEEEE------EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCC
Confidence            57777762      5779999999999999999999999999999999986543

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=96.12  E-value=0.0086  Score=43.98  Aligned_cols=73  Identities=16%  Similarity=0.121  Sum_probs=47.7

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCce----EEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSM----SLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~q----rL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      .++|.|...+  .+..+..+|.+.+|.+|..-|-...+.+....    ...|....|..    .+++.+|.++++.||..
T Consensus         2 ~~rVtv~~~~--~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~----L~~~~tL~~~gV~dGd~   75 (79)
T PF08817_consen    2 LCRVTVDAGN--GRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRP----LDPDQTLADAGVRDGDV   75 (79)
T ss_dssp             EEEEEEE-TT----EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEE----EETTSBCGGGT--TT-E
T ss_pred             EEEEEEEcCC--CcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcc----cCCcCcHhHcCCCCCCE
Confidence            4778886433  35889999999999999999999988755332    25554334543    37899999999999999


Q ss_pred             EEE
Q 026104           89 LHV   91 (243)
Q Consensus        89 IhV   91 (243)
                      +++
T Consensus        76 L~L   78 (79)
T PF08817_consen   76 LVL   78 (79)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            876

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.016  Score=55.72  Aligned_cols=73  Identities=10%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ..|.|+++. ..+..+ .++.+.|..-||++|+..||++|+.|++.++   |..    ..|+-.++...|++|++||+.=
T Consensus         4 ~~v~VKW~g-k~y~v~-~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vK---Gg~----a~dd~~~~al~iKpn~~lmMmG   74 (473)
T KOG1872|consen    4 DTVIVKWGG-KKYPVE-TLSTDETPSVLKAQLFALTGVPPERQKVMVK---GGL----AKDDVDWGALQIKPNETLMMMG   74 (473)
T ss_pred             ceEeeeecC-ccccce-eccCCCchHHHHHHHHHhcCCCccceeEEEe---ccc----ccccccccccccCCCCEEEeec
Confidence            356676542 223322 3789999999999999999999999999885   554    3677788999999999999986


Q ss_pred             cC
Q 026104           94 LD   95 (243)
Q Consensus        94 ~~   95 (243)
                      +.
T Consensus        75 t~   76 (473)
T KOG1872|consen   75 TA   76 (473)
T ss_pred             cc
Confidence            54

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.02  E-value=0.0028  Score=45.35  Aligned_cols=62  Identities=15%  Similarity=0.150  Sum_probs=49.8

Q ss_pred             CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      --++...++..++.||+++|.-|...||+-|+...|.=       ...+.+|.-+|++|-+.+|+.+.+
T Consensus         9 rLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k-------~~~i~kd~I~L~dyeihdg~~lel   70 (73)
T KOG3493|consen    9 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKK-------WYTIFKDHITLSDYEIHDGMNLEL   70 (73)
T ss_pred             hcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHh-------hhhhhhcccceeeEEeccCccEEE
Confidence            33456677889999999999999999999998776552       122468999999999999997654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.016  Score=53.72  Aligned_cols=66  Identities=20%  Similarity=0.177  Sum_probs=54.9

Q ss_pred             eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeee-ecCCCCCccCCCCCCCCcEEEEe
Q 026104           27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA-ALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~-~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      ..++-+...-||.+++.+|++..|+.+..|||.+-+.+|+.-. +-.+-+.+|-+|+|++|..+.|.
T Consensus       349 ~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq  415 (418)
T KOG2982|consen  349 IASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ  415 (418)
T ss_pred             ccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence            3456678889999999999999999999999999988887531 11255789999999999998774

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=95.29  E-value=0.012  Score=45.23  Aligned_cols=49  Identities=24%  Similarity=0.154  Sum_probs=41.2

Q ss_pred             EEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104           30 VRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP   83 (243)
Q Consensus        30 ~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i   83 (243)
                      +.-.++-||-+||.||+-++--|++.|||...+.+  +   |.+|.++|++-|.
T Consensus        16 ~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~e--q---lL~D~ktL~d~gf   64 (110)
T KOG4495|consen   16 TDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTE--Q---LLDDGKTLGDCGF   64 (110)
T ss_pred             eecCccccHHHHHHHHHHHHhCCCcchheeecCHH--H---Hhhccchhhhccc
Confidence            44578999999999999999999999999986433  2   5689999999843

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=95.23  E-value=0.21  Score=36.41  Aligned_cols=77  Identities=21%  Similarity=0.165  Sum_probs=57.7

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCc-eEEEEEcCCCCeeeecCCC-CCccCCCCCCCCc
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNS-MSLELYDDTNTKVAALTDN-SRPLGFYSPLQGY   87 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~-qrL~l~~~~g~~~~~l~~d-~~~L~~y~i~dg~   87 (243)
                      +...++|.|.-.+  +....++|.++.||.+|.+-|......+... -+|.-  .--+..  +..+ +++|.+.++.+..
T Consensus         3 ~~~~~~I~vRlpd--G~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~--~~Pr~~--l~~~~~~tl~e~~l~p~~   76 (82)
T PF00789_consen    3 ESDVVRIQVRLPD--GSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELIT--AFPRRE--LTDEDSKTLEEAGLLPSA   76 (82)
T ss_dssp             TSSEEEEEEEETT--STEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEE--SSSTEE--CCSTTTSBTCCCTTSSCE
T ss_pred             CCCEEEEEEECCC--CCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEe--CCCCcC--CCccccccHHHhcCCCCe
Confidence            4567888888554  4578999999999999999999998888764 45543  222332  2233 5999999999999


Q ss_pred             EEEEe
Q 026104           88 RLHVI   92 (243)
Q Consensus        88 ~IhVv   92 (243)
                      .|+|.
T Consensus        77 ~l~v~   81 (82)
T PF00789_consen   77 TLIVE   81 (82)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99884

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>smart00666 PB1 PB1 domain

Probab=94.90  E-value=0.12  Score=37.51  Aligned_cols=53  Identities=19%  Similarity=0.328  Sum_probs=42.6

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA   69 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~   69 (243)
                      ++|.+...   +.....++++++|..+|+.+|...++.+....+|.+.|.+|..+.
T Consensus         2 ~~vK~~~~---~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~   54 (81)
T smart00666        2 VDVKLRYG---GETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVS   54 (81)
T ss_pred             ccEEEEEC---CEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEE
Confidence            34555432   235667789999999999999999999989999999998887654

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=94.63  E-value=0.56  Score=35.62  Aligned_cols=68  Identities=9%  Similarity=0.008  Sum_probs=49.5

Q ss_pred             ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeecC
Q 026104           26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   95 (243)
Q Consensus        26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~   95 (243)
                      ....+.|+...||+.++..+...+.| +...||.-+...+.. ..|.+...||.+-++.+|..|.+.--|
T Consensus        14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~-e~L~~~~~Tv~da~L~~gQ~vliE~rn   81 (88)
T PF14836_consen   14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSY-ELLNNPEITVEDAGLYDGQVVLIEERN   81 (88)
T ss_dssp             EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCE-EEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred             cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcch-hhhCCCCccHHHccCcCCCEEEEEeec
Confidence            36778999999999999999999999 888999987655543 346778899999999999987776544

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=94.04  E-value=0.29  Score=41.22  Aligned_cols=65  Identities=18%  Similarity=0.277  Sum_probs=45.8

Q ss_pred             EEEEEEeCCCCC----ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104           14 VLLRVTHSNLKS----FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP   83 (243)
Q Consensus        14 v~v~It~s~~~~----~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i   83 (243)
                      |+|+|++  +.+    ....+.++.+.||++|+.+|...+++++..| +.|+...++.+.  ..++..+..+..
T Consensus         1 i~Vlvss--~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~-~~L~~~~n~~l~--~~~~~~~s~l~~   69 (162)
T PF13019_consen    1 INVLVSS--FDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQ-LYLTTNSNGQLS--PSSDIPLSSLLS   69 (162)
T ss_pred             CeEEEec--CCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccce-eEEEEeCCCeeC--CCccccHHhhcc
Confidence            5788874  333    3577888999999999999999999999987 555544444432  245555555543

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=94.01  E-value=0.33  Score=36.23  Aligned_cols=43  Identities=16%  Similarity=0.275  Sum_probs=38.1

Q ss_pred             eeEEEcCCCCCHHHHHHHHHhHhCCCC-CceEEEEEcCCCCeee
Q 026104           27 SADVRFPLQMSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKVA   69 (243)
Q Consensus        27 ~~e~r~~~~~TV~~LK~KLe~~tGipp-~~qrL~l~~~~g~~~~   69 (243)
                      .+-.|+++++++.+|+++|..++++.. +...|.+.|.+|..+.
T Consensus        11 ~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~   54 (82)
T cd06407          11 KIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVL   54 (82)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEE
Confidence            677899999999999999999999987 7889999998887653

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PTZ00243 ABC transporter; Provisional

Probab=93.55  E-value=0.083  Score=58.32  Aligned_cols=59  Identities=24%  Similarity=0.416  Sum_probs=48.0

Q ss_pred             cCCCCCCCEEEEc-CCCceeEEEEecccCCC-CCccEEEEEEeCC-C-------------CccCcEECCEEeeec
Q 026104          156 CSNITVGDRCEVD-PGAKRGVVKYVGQAESI-APGFWVGIQYDEP-L-------------GKHNGIVKGVRYFEC  214 (243)
Q Consensus       156 ~~~~~vG~rv~v~-~~~~~G~vryvG~~~~~-~~g~w~GVelDep-~-------------GkndGs~~G~rYF~c  214 (243)
                      +=+-.||.||-+. ...-+|++||||.+... .++.++||||.-| .             +-|+|.+.|-+.|..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (1560)
T PTZ00243        122 AWNCMVGAEVVSTLDASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTP  196 (1560)
T ss_pred             ccccccccEEEeeccccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCc
Confidence            4457799999996 34789999999999774 3779999999965 1             238999999999987

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=93.53  E-value=0.18  Score=45.27  Aligned_cols=68  Identities=13%  Similarity=0.127  Sum_probs=53.5

Q ss_pred             ceeEEEcCCCCCHHHHHHH-HHhHhCCCCCceEEEEEcC-CCCeeeecCCCCCccCCCCCCCCcEEEEeecCCC
Q 026104           26 FSADVRFPLQMSVESVKDK-LWRKCGTSVNSMSLELYDD-TNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS   97 (243)
Q Consensus        26 ~~~e~r~~~~~TV~~LK~K-Le~~tGipp~~qrL~l~~~-~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~p~   97 (243)
                      +..++..+.+-||.+|+.+ +.....+.|..+|+.|+-. .|+.+    -|+.+|.+|+..+|.+|.|-|..|.
T Consensus        13 ~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl----~~~s~l~e~~~~s~~~i~vKDLGpQ   82 (297)
T KOG1639|consen   13 RIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPL----IDNSKLQEYGDGSGATIYVKDLGPQ   82 (297)
T ss_pred             eeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccc----cchhHHHHhccCCCCEEEEeccCCc
Confidence            4456778889999999955 5556788898888888654 45553    4566699999999999999999884

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=93.06  E-value=0.35  Score=35.08  Aligned_cols=54  Identities=19%  Similarity=0.290  Sum_probs=42.5

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA   69 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~   69 (243)
                      |.|.+....-  ....+.++.+.|..+|+.+|...+|.++...+|.+.|.+|..+.
T Consensus         2 ~~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~   55 (84)
T PF00564_consen    2 VRVKVRYGGD--IRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVT   55 (84)
T ss_dssp             EEEEEEETTE--EEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEE
T ss_pred             EEEEEEECCe--eEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEE
Confidence            5566654432  11236688999999999999999999999999999999997664

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>PRK10708 hypothetical protein; Provisional

Probab=92.90  E-value=0.55  Score=32.77  Aligned_cols=56  Identities=30%  Similarity=0.492  Sum_probs=43.5

Q ss_pred             CCCCCEEEEc-CC--CceeEEEEecccCCCCCccEEEEEEeC-CCCccCcEECCEEeeec-CCCceeeecCC
Q 026104          159 ITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDE-PLGKHNGIVKGVRYFEC-PPLHGAMVRPD  225 (243)
Q Consensus       159 ~~vG~rv~v~-~~--~~~G~vryvG~~~~~~~g~w~GVelDe-p~GkndGs~~G~rYF~c-~~~~G~Fv~~~  225 (243)
                      ++|++||.|. .|  .|.|+|.-+-  ++ ..|++.=|.|++ |.        |+-||.- ...-|+||.|.
T Consensus         1 MkvnD~VtVKTDG~~rR~G~iLavE--~F-~EG~MyLvaL~dYP~--------GiWFFNE~~~~~G~FVep~   61 (62)
T PRK10708          1 MKVNDRVTVKTDGGPRRPGVVLAVE--EF-SEGTMYLVSLEDYPL--------GIWFFNEAGHQDGIFVEKA   61 (62)
T ss_pred             CccccEEEEecCCCccccceEEEEe--ec-cCcEEEEEEcCcCCC--------ceEEEeccCCCCceEeccc
Confidence            4789999996 23  5789999884  34 789999999987 53        6778866 77889999874

>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose []

Probab=92.60  E-value=0.65  Score=32.41  Aligned_cols=56  Identities=27%  Similarity=0.504  Sum_probs=43.4

Q ss_pred             CCCCCEEEEcC-C--CceeEEEEecccCCCCCccEEEEEEeC-CCCccCcEECCEEeeec-CCCceeeecCC
Q 026104          159 ITVGDRCEVDP-G--AKRGVVKYVGQAESIAPGFWVGIQYDE-PLGKHNGIVKGVRYFEC-PPLHGAMVRPD  225 (243)
Q Consensus       159 ~~vG~rv~v~~-~--~~~G~vryvG~~~~~~~g~w~GVelDe-p~GkndGs~~G~rYF~c-~~~~G~Fv~~~  225 (243)
                      ++|++||.|.. |  .|.|+|.-+-  ++ ..|++.=|.|++ |.        |+-||.- ....|+||.|.
T Consensus         1 MkvnD~VtVKTDG~~rR~G~ilavE--~F-~EG~MYLvaL~dYP~--------GiWFFNE~~~~dG~FVep~   61 (62)
T PF10781_consen    1 MKVNDRVTVKTDGGPRREGVILAVE--PF-NEGTMYLVALEDYPA--------GIWFFNEKDSPDGTFVEPR   61 (62)
T ss_pred             CccccEEEEecCCcccccceEEEEe--ec-cCcEEEEEEcCcCCc--------ceEEEecCCCCCcEEeeec
Confidence            47899999962 3  5789998884  34 789999999987 53        6778865 77889999875

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=92.19  E-value=1.1  Score=33.64  Aligned_cols=80  Identities=15%  Similarity=0.108  Sum_probs=56.3

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeec----CCCCCccCCCCCCCC
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAAL----TDNSRPLGFYSPLQG   86 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l----~~d~~~L~~y~i~dg   86 (243)
                      ...++|.|.-.  .+...++||..+.||..|..=++.. |-.|..-+|..-.+ -+.+..+    .+.+.||.+-|+.+.
T Consensus         2 ~~~~~I~iRlp--~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FP-rr~~~~~~~~~~~~~~TL~eaGL~~s   77 (85)
T cd01774           2 PDTVKIVFKLP--NGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFP-RRVLPCLPSEGDPPPPTLLEAGLSNS   77 (85)
T ss_pred             CceEEEEEECC--CCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCC-CccccccccccCcCCCCHHHcCCCCc
Confidence            34678888733  4458899999999999999999654 44556666655222 1333222    245779999999999


Q ss_pred             cEEEEeec
Q 026104           87 YRLHVIDL   94 (243)
Q Consensus        87 ~~IhVvD~   94 (243)
                      ..+.|.|+
T Consensus        78 ~~L~V~d~   85 (85)
T cd01774          78 EVLFVQDL   85 (85)
T ss_pred             cEEEEecC
Confidence            98888873

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=91.91  E-value=0.71  Score=33.19  Aligned_cols=43  Identities=21%  Similarity=0.236  Sum_probs=36.8

Q ss_pred             eeEEEcC-CCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeee
Q 026104           27 SADVRFP-LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA   69 (243)
Q Consensus        27 ~~e~r~~-~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~   69 (243)
                      ...++++ .+.|..+|+++|...++.+...-+|.+.|.+|..+.
T Consensus        11 ~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~   54 (81)
T cd05992          11 IRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVT   54 (81)
T ss_pred             CEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEE
Confidence            4567777 999999999999999999987888999988886653

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=90.91  E-value=1.3  Score=33.79  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=32.0

Q ss_pred             CCCCHHHHHHHHHhHhCCCC-CceEEEEEcCCCCeee
Q 026104           34 LQMSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKVA   69 (243)
Q Consensus        34 ~~~TV~~LK~KLe~~tGipp-~~qrL~l~~~~g~~~~   69 (243)
                      ++++..+|++||...+.+++ ....|.+.|.+|..+.
T Consensus        23 ~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~   59 (91)
T cd06398          23 LDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVT   59 (91)
T ss_pred             CCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEE
Confidence            36999999999999999998 7788899998888764

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=89.89  E-value=1.5  Score=32.85  Aligned_cols=63  Identities=17%  Similarity=0.249  Sum_probs=44.6

Q ss_pred             EEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCC
Q 026104           15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFY   81 (243)
Q Consensus        15 ~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y   81 (243)
                      +..|+.+..   ..-+.++..-|+..|++||+..+.+|+..--|.+.|.+|..+. |.++......|
T Consensus         2 ~fKv~~~g~---~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~IT-lssd~eL~d~~   64 (82)
T cd06397           2 QFKSSFLGD---TRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEIT-LSSNKELQDFY   64 (82)
T ss_pred             eEEEEeCCc---eEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEE-ecchHHHHHHH
Confidence            345555544   2234467789999999999999999998899999888877764 44444333333

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=89.43  E-value=0.19  Score=46.78  Aligned_cols=67  Identities=13%  Similarity=0.016  Sum_probs=52.9

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCC--CceEEEEEcCCCCeeeecCCCCCccCCCC
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSV--NSMSLELYDDTNTKVAALTDNSRPLGFYS   82 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp--~~qrL~l~~~~g~~~~~l~~d~~~L~~y~   82 (243)
                      ..+.-|.+.|++++-+-+..++..+..|||+.||.-|+.+.=-.|  .+|||++   +|+.    +.|...|.++-
T Consensus         5 ~~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliY---sgkl----lld~qcl~d~l   73 (391)
T KOG4583|consen    5 IFEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIY---SGKL----LLDHQCLTDWL   73 (391)
T ss_pred             cCCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHh---hccc----cccchhHHHHH
Confidence            345569999998887777889999999999999999999865554  7899999   6875    46666666653

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=89.25  E-value=1.1  Score=41.60  Aligned_cols=62  Identities=15%  Similarity=0.219  Sum_probs=45.6

Q ss_pred             eEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeecCC
Q 026104           28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP   96 (243)
Q Consensus        28 ~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~p   96 (243)
                      ..+.++.+..|.+||+-.+..+|+|+++.+++|   .|+.+    .++.++..--+.--+.+|++-.+|
T Consensus        16 l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viF---aGKeL----s~~ttv~~cDL~qqs~~hi~~lRP   77 (446)
T KOG0006|consen   16 LPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIF---AGKEL----SNDTTVQNCDLSQQSATHIMLLRP   77 (446)
T ss_pred             eeEEEecCCCHHHHHHHHHHhhCCChhheEEEE---ecccc----ccCceeecccccccchhhhhccCc
Confidence            455667788999999999999999999999999   68874    455555533333334567776666

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=89.13  E-value=1.8  Score=32.70  Aligned_cols=50  Identities=14%  Similarity=0.264  Sum_probs=37.5

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKV   68 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~   68 (243)
                      |+|.|.-   .+-..-++++++++..+|.+||..++|+. +..+|.+.|. |..+
T Consensus         3 ikVKv~~---~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE-GD~i   52 (86)
T cd06408           3 IRVKVHA---QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD-GDMI   52 (86)
T ss_pred             EEEEEEe---cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC-CCCc
Confidence            4555531   22256789999999999999999999995 5667777776 6543

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=88.56  E-value=5.2  Score=29.04  Aligned_cols=74  Identities=15%  Similarity=0.149  Sum_probs=49.8

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCC-C-CCccCCCCCCCCcEE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTD-N-SRPLGFYSPLQGYRL   89 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~-d-~~~L~~y~i~dg~~I   89 (243)
                      ...+|.|.-.  .+...+++|+.+.||.+|.+-+....+.....-+|.-  .--+..  +.+ | +++|.+.++.+...|
T Consensus         3 ~~~~I~iRlP--dG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t--~~Prk~--l~~~d~~~tL~e~gL~p~~~l   76 (80)
T smart00166        3 DQCRLQIRLP--DGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNS--PFPRRT--FTKDDYSKTLLELALLPSSTL   76 (80)
T ss_pred             CeEEEEEEcC--CCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEe--CCCCcC--CccccccCCHHHCCCCCceEE
Confidence            3567777633  3347899999999999999999666665544444433  222222  222 2 689999998888877


Q ss_pred             EE
Q 026104           90 HV   91 (243)
Q Consensus        90 hV   91 (243)
                      .|
T Consensus        77 ~v   78 (80)
T smart00166       77 VL   78 (80)
T ss_pred             EE
Confidence            66

Present in FAF1 and Shp1p.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=88.34  E-value=4.5  Score=29.56  Aligned_cols=75  Identities=15%  Similarity=0.117  Sum_probs=49.6

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      ..+|.|.-.  .+....++|+.+.||.+|.+-+....+.+ ..  ..|...--+......+.+.+|.+.|+.+-..|+|.
T Consensus         4 ~~~i~iRlp--~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~--f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~   78 (79)
T cd01772           4 ETRIQIRLL--DGTTLKQTFKAREQLAAVRLFVELNTGNG-GP--FTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT   78 (79)
T ss_pred             EEEEEEECC--CCCEEEEEeCCCChHHHHHHHHHHcCCCC-CC--EEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence            466777633  33478899999999999999998776543 22  23332222222112234789999999999888874

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=87.98  E-value=3  Score=31.19  Aligned_cols=50  Identities=22%  Similarity=0.227  Sum_probs=38.5

Q ss_pred             EEEEEEeCCCCCceeEEEcCC--CCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCee
Q 026104           14 VLLRVTHSNLKSFSADVRFPL--QMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKV   68 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~--~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~   68 (243)
                      |+|.++...-   ..-.++++  ++|+.+|++.+...++++  .-.|.+.|.+|..+
T Consensus         1 V~vKaty~~d---~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKYlDde~e~v   52 (81)
T cd06396           1 VNLKVTYNGE---SQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKYVDEENEEV   52 (81)
T ss_pred             CEEEEEECCe---EEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEEEcCCCCEE
Confidence            4556654432   56678888  899999999999999999  66777777777665

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>COG5417 Uncharacterized small protein [Function unknown]

Probab=87.93  E-value=2.4  Score=31.32  Aligned_cols=69  Identities=23%  Similarity=0.410  Sum_probs=47.7

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeee-----ecCCCCCccCCCCCCCCcE
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA-----ALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~-----~l~~d~~~L~~y~i~dg~~   88 (243)
                      |.|..||=+  +....+|++...+|..|=.-+.+       .++++..+-+|..+-     .+..++..|.+|++.+|.+
T Consensus         7 VTvD~t~y~--g~~yDLrl~d~~pikklIdivwe-------~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~   77 (81)
T COG5417           7 VTVDFTNYN--GGTYDLRLPDYLPIKKLIDIVWE-------SLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDI   77 (81)
T ss_pred             EEEEeEecC--CceEEEeccccchHHHHHHHHHH-------HhhccccccCCCEEEEeccceEecCCceEEeccccCCCE
Confidence            444456443  55789999999999877665544       455555555555442     2456788899999999998


Q ss_pred             EEE
Q 026104           89 LHV   91 (243)
Q Consensus        89 IhV   91 (243)
                      +.+
T Consensus        78 Lei   80 (81)
T COG5417          78 LEI   80 (81)
T ss_pred             EEe
Confidence            764

>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein

Probab=87.10  E-value=1.3  Score=32.90  Aligned_cols=41  Identities=17%  Similarity=0.181  Sum_probs=36.9

Q ss_pred             ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCC
Q 026104           26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT   66 (243)
Q Consensus        26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~   66 (243)
                      +.+-+++++..+.++|.++|......+|+..+|++++.++.
T Consensus         7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~   47 (78)
T cd06411           7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGED   47 (78)
T ss_pred             EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCC
Confidence            35678999999999999999999999999999999987554

p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=86.56  E-value=8.9  Score=28.27  Aligned_cols=77  Identities=14%  Similarity=0.011  Sum_probs=54.7

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      +..++|.|.-  ..+...++||..+.|++.|-.=+... |.++..-+|.=-- --+.+. -.+.+.+|.+.|+....+|.
T Consensus         2 ~~~~~i~iRl--P~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~f-PRk~~~-~~d~~~TL~e~gL~p~~~L~   76 (80)
T cd01771           2 EPISKLRVRT--PSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSW-PRRDLT-QLDPNFTLLELKLYPQETLI   76 (80)
T ss_pred             CCeEEEEEEC--CCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCC-CCCCCc-CCCCCCcHHHcCCCCCcEEE
Confidence            4678888883  34458899999999999999988764 7777666654321 223322 12446799999998888877


Q ss_pred             Ee
Q 026104           91 VI   92 (243)
Q Consensus        91 Vv   92 (243)
                      |.
T Consensus        77 Ve   78 (80)
T cd01771          77 LE   78 (80)
T ss_pred             EE
Confidence            74

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e

Probab=86.14  E-value=3.4  Score=41.04  Aligned_cols=84  Identities=18%  Similarity=0.237  Sum_probs=53.8

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHh--CCC------CCceEEEEEcCCCCeeeecCCCC-------
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDTNTKVAALTDNS-------   75 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~t--Gip------p~~qrL~l~~~~g~~~~~l~~d~-------   75 (243)
                      ...+.|.|.......-....++=.-.||.|+|+||-...  ++|      +.++.|+.+.+.+..+. |.+++       
T Consensus       187 ~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~i-L~D~D~ts~~~~  265 (539)
T PF08337_consen  187 YKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLI-LQDEDSTSKVEG  265 (539)
T ss_dssp             S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEE-ESSSSTTSEEET
T ss_pred             eEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCccc-ccCCCCCcccCC
Confidence            345777765433333357788888899999999976542  322      47789999876543322 22221       


Q ss_pred             -----CccCCCCCCCCcEEEEeecC
Q 026104           76 -----RPLGFYSPLQGYRLHVIDLD   95 (243)
Q Consensus        76 -----~~L~~y~i~dg~~IhVvD~~   95 (243)
                           .||..|+|.||++|-++...
T Consensus       266 ~wkrLNTL~HY~V~dga~vaLv~k~  290 (539)
T PF08337_consen  266 GWKRLNTLAHYKVPDGATVALVPKQ  290 (539)
T ss_dssp             TEEE--BHHHHT--TTEEEEEEES-
T ss_pred             CceEeccHhhcCCCCCceEEEeecc
Confidence                 38999999999999999863

g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=83.62  E-value=9.1  Score=27.48  Aligned_cols=71  Identities=10%  Similarity=0.075  Sum_probs=44.8

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcC-CCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDD-TNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~-~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      .+|.|.-.+  +...++||+.+.||.+|.+=+.....- +..-.  |... ..+.+. -.+.+.+|.+.|+.+. .+.|
T Consensus         3 t~i~iRlpd--G~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~--L~t~~Pr~~~~-~~~~~~TL~e~gL~~s-~~~~   74 (77)
T cd01767           3 TKIQIRLPD--GKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFT--LMTSFPRRVLT-DLDYELTLQEAGLVNE-VVFQ   74 (77)
T ss_pred             EEEEEEcCC--CCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEE--EEeCCCCccCC-CCCccCcHHHcCCccc-eEEE
Confidence            456666333  347899999999999999998876543 22233  3322 223321 1136889999999854 4444

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=82.39  E-value=13  Score=27.26  Aligned_cols=71  Identities=14%  Similarity=0.074  Sum_probs=46.6

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCC-CceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp-~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      ..+|.|.-.  .+....+||+.+.||.+|.+=+....+.+. ..-.|.--. ..+.   +.+++.+|.+-|+.+.+.+
T Consensus         4 ~t~iqiRlp--dG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~f-P~k~---l~~~~~Tl~eagL~~s~v~   75 (79)
T cd01770           4 TTSIQIRLA--DGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAF-PVKE---LSDESLTLKEANLLNAVIV   75 (79)
T ss_pred             eeEEEEECC--CCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCC-CCcc---cCCCCCcHHHCCCcCcEEE
Confidence            456667633  345788999999999999999998765332 223332211 2343   4466889999998865543

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=81.58  E-value=14  Score=28.60  Aligned_cols=74  Identities=12%  Similarity=0.196  Sum_probs=60.5

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      +.-|+|.|..  -.......++..+.++.-|..--....|++.++-|..|   +|+.+    .+..|=.++.+++|..|-
T Consensus        18 ~~hi~LKV~g--qd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlF---dG~rI----~~~~TP~~L~mEd~D~Ie   88 (99)
T KOG1769|consen   18 SEHINLKVKG--QDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLF---DGQRI----RETHTPADLEMEDGDEIE   88 (99)
T ss_pred             cceEEEEEec--CCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEE---CCcCc----CCCCChhhhCCcCCcEEE
Confidence            4569999973  22235678899999999999999999999999999888   78774    566788899999999988


Q ss_pred             Eee
Q 026104           91 VID   93 (243)
Q Consensus        91 VvD   93 (243)
                      |.=
T Consensus        89 v~~   91 (99)
T KOG1769|consen   89 VVQ   91 (99)
T ss_pred             EEe
Confidence            763

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=80.53  E-value=8.1  Score=29.16  Aligned_cols=47  Identities=19%  Similarity=0.195  Sum_probs=40.7

Q ss_pred             CCCceeEEEcCCCCCHHHHHHHHHhHhCCCC---CceEEEEEcCCCCeee
Q 026104           23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSV---NSMSLELYDDTNTKVA   69 (243)
Q Consensus        23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp---~~qrL~l~~~~g~~~~   69 (243)
                      .+++.+-.++.+++.+.+|++-|....|+..   ..-.|.+.|.+|..+.
T Consensus         8 ~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~Vl   57 (86)
T cd06409           8 PKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVL   57 (86)
T ss_pred             CCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEE
Confidence            4667888899999999999999999999997   5788899888887653

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
2kj6_A	97	Nmr Solution Structure Of A Tubulin Folding Cofacto		5e-33
1tov_A	98	Structural Genomics Of Caenorhabditis Elegans: Cap-		1e-20
1lpl_A	95	Structural Genomics Of Caenorhabditis Elegans: Cap-		1e-20
4b6m_A	84	Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gl		3e-20
1whg_A	113	Solution Structure Of The Cap-Gly Domain In Mouse T		1e-18
2cp2_A	95	Solution Structure Of The 1st Cap-Gly Domain In Hum		2e-14
2cp5_A	141	Solution Structure Of The 1st Cap-Gly Domain In Hum		5e-14
2qk0_A	74	Structural Basis Of Microtubule Plus End Tracking B		4e-13
3rdv_A	72	Structure Of The Slain2c-Clipcg1 Complex Length = 7		1e-12
2cp7_A	84	Solution Structure Of The 1st Cap-Gly Domain In Mou		1e-12
2e3i_A	86	Crystal Structure Of The Clip-170 Cap-Gly Domain 1		2e-12
1t0y_A	122	Solution Structure Of A Ubiquitin-Like Domain From		2e-12
2cp3_A	84	Solution Structure Of The 2nd Cap-Gly Domain In Hum		6e-12
2cp6_A	172	Solution Structure Of The 2nd Cap-Gly Domain In Hum		7e-12
1whh_A	102	Solution Structure Of The 2nd Cap-Gly Domain In Mou		9e-12
2e3h_A	90	Crystal Structure Of The Clip-170 Cap-Gly Domain 2		5e-11
2e4h_A	98	Solution Structure Of Cytoskeletal Protein In Compl		6e-11
2coy_A	112	Solution Structure Of The Cap-Gly Domain In Human D		1e-10
2cp0_A	95	Solution Structure Of The 1st Cap-Gly Domain In Hum		2e-10
1txq_A	93	Crystal Structure Of The Eb1 C-Terminal Domain Comp		5e-10
2hkn_A	97	Crystal Structure Of The Cap-Gly Domain Of Human Dy		7e-10
3tq7_P	71	Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Do		1e-09
2hl3_A	97	Crystal Structure Of The A49m Mutant Cap-Gly Domain		2e-09
2cow_A	100	Solution Structure Of The Cap-Gly Domain In Human K		3e-09
2coz_A	122	Solution Structure Of The Cap-Gly Domain In Human C		7e-09
2z0w_A	96	Crystal Structure Of The 2nd Cap-Gly Domain In Huma		1e-08
1whj_A	102	Solution Structure Of The 1st Cap-Gly Domain In Mou		4e-08
1whk_A	91	Solution Structure Of The 3rd Cap-Gly Domain In Mou		3e-06
4b6w_A	86	Architecture Of Trypanosoma Brucei Tubulin-Binding		1e-05
1v6e_A	95	Solution Structure Of A N-Terminal Ubiquitin-Like D		2e-04

>pdb|2KJ6|A Chain A, Nmr Solution Structure Of A Tubulin Folding Cofactor B Obtained From Arabidopsis Thaliana: Northeast Structural Genomics Consortium Target Ar3436a Length = 97

Iteration: 1
 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 61/83 (73%), Positives = 74/83 (89%)
Query: 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTD 73
          V L +TH+NLKSFSAD RF  QMSVE+VK+KLW+KCGTSVNSM+LELYDD+ +KVA L+D
Sbjct: 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSD 74
Query: 74 NSRPLGFYSPLQGYRLHVIDLDP 96
          +SRPLGF+SP  G+RLH+IDLDP
Sbjct: 75 DSRPLGFFSPFDGFRLHIIDLDP 97

>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domain Of F53f4.3 Length = 98

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 4/90 (4%)
Query: 148 SNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNG 204
           S+   E+   NI VG+RCEV  GA   +RG V YVG A     G WVG++YDEP+GK++G
Sbjct: 4   SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVG-ATKFKEGVWVGVKYDEPVGKNDG 62
Query: 205 IVKGVRYFECPPLHGAMVRPDKVKVGDYPE 234
            V GVRYF+C P +G  VRP  VKVGD+PE
Sbjct: 63  SVAGVRYFDCDPKYGGFVRPVDVKVGDFPE 92

>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domain Of F53f4.3 Length = 95

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 4/90 (4%)
Query: 148 SNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNG 204
           S+   E+   NI VG+RCEV  GA   +RG V YVG A     G WVG++YDEP+GK++G
Sbjct: 1   SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVG-ATKFKEGVWVGVKYDEPVGKNDG 59
Query: 205 IVKGVRYFECPPLHGAMVRPDKVKVGDYPE 234
            V GVRYF+C P +G  VRP  VKVGD+PE
Sbjct: 60  SVAGVRYFDCDPKYGGFVRPVDVKVGDFPE 89

>pdb|4B6M|A Chain A, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly Domain Length = 84

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 57/76 (75%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
            I VGDRC   PG + G V++VG+  S+ PG+WVG+++DEP+GK +G VKG R F+C P 
Sbjct: 5   TIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPN 64
Query: 218 HGAMVRPDKVKVGDYP 233
           +G  +RPD+V+VGD+P
Sbjct: 65  YGGFLRPDQVEVGDFP 80

>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse Tubulin Specific Chaperone B Length = 113

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Query: 133 EKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPGF 189
           E++ +Q  +    +LS    +   S I+VG RCEV   D   +RG V YVG  +   PG+
Sbjct: 9   EELRAQQEAEAAQRLSEEKAQ--ASAISVGSRCEVRAPDHSLRRGTVMYVGLTD-FKPGY 65
Query: 190 WVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD 231
           WVG++YDEPLGK++G V G RYFEC   +GA V+P  V VGD
Sbjct: 66  WVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGD 107

>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 115CYLN2 Length = 95

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 153 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 212
           +D   +  VG+R  V+ G K GVV+Y+G+ +  APG W G+  D+P+GK++G V GVRYF
Sbjct: 13  DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGVRYF 70
Query: 213 ECPPLHGAMVRPDKV 227
           ECP L G   RP K+
Sbjct: 71  ECPALQGIFTRPSKL 85

>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 170RESTIN Length = 141

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 148 SNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVK 207
           S+   E+   +  VG+R  V+ G K G ++++G+ +  APG W GI  DEP+GK++G V 
Sbjct: 54  SSETQEEFVDDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVA 111
Query: 208 GVRYFECPPLHGAMVRPDKV 227
           GVRYF+C PL G   RP K+
Sbjct: 112 GVRYFQCEPLKGIFTRPSKL 131

>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 74

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
           S+  VG+R  V+ G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C P
Sbjct: 2   SDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEP 59
Query: 217 LHGAMVRPDK 226
           L G   RP K
Sbjct: 60  LKGIFTRPSK 69

>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex Length = 72

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 220
           VG+R  V+ G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C PL G 
Sbjct: 5   VGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGI 62
Query: 221 MVRPDKV 227
             RP K+
Sbjct: 63  FTRPSKL 69

>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse Clip- 170RESTIN Length = 84

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
           S   VG+R  V+ G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C P
Sbjct: 6   SGFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEP 63
Query: 217 LHGAMVRPDKV 227
           L G   RP K+
Sbjct: 64  LKGIFTRPSKL 74

>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1 Length = 86

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
           +  VG+R  V+ G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C PL
Sbjct: 2   DFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 218 HGAMVRPDKV 227
            G   RP K+
Sbjct: 60  KGIFTRPSKL 69

>pdb|1T0Y|A Chain A, Solution Structure Of A Ubiquitin-Like Domain From Tubulin- Binding Cofactor B Length = 122

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 16  LRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNS 75
           L +T +N   F  + ++P  MS+  +K KL    GT+V+SM ++L+D  +     LTD +
Sbjct: 9   LEIT-TNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGA 67
Query: 76  RPLGFYSPLQGYRLHVIDLDPSSVTSGGW-LEDTSLVEKYTISEEEYSKRDGTFRKFKEK 134
           + L       GYR+H +D     VT G    +D S+VEKY +S++ Y KR  + R +K+K
Sbjct: 68  KSLKDLGVRDGYRIHAVD-----VTGGNEDFKDESMVEKYEMSDDTYGKRTDSVRAWKKK 122

>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human Clip- 115CYLN2 Length = 84

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
           S + +GDR  V  G K GVV+YVG+ +  A G W G++ DEPLGK++G V G RYF+CPP
Sbjct: 6   SGLRLGDRVLVG-GTKTGVVRYVGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCPP 63
Query: 217 LHGAMVRPDKV-KVGDYP 233
             G      KV ++G  P
Sbjct: 64  KFGLFAPIHKVIRIGSGP 81

>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human Clip- 170RESTIN Length = 172

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
           + +GDR  V  G K GVV+++G+ +  A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 39  LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 96
Query: 219 GAMVRPDKVKVGDYPERDP 237
           G      KV    +P   P
Sbjct: 97  GLFAPVHKVTKIGFPSTTP 115

>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse Clip170-Related 59kda Protein Clipr-59 Length = 102

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 220
           VGD+  V  G K+G+V++ G+ +  APG+W GI+ D+P GKH+G V GVRYF C P HG 
Sbjct: 28  VGDQVLV-AGQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGV 85
Query: 221 MVRPDKV-KVGDYP 233
                ++ ++G  P
Sbjct: 86  FAPASRIQRIGSGP 99

>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2 Length = 90

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
           + +GDR  V  G K GVV+++G+ +  A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 2   LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 59
Query: 219 GAMVRPDKVKVGDYPERDP 237
           G      KV    +P   P
Sbjct: 60  GLFAPVHKVTKIGFPSTTP 78

>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With Tubulin Tail Length = 98

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
           + +GDR  V  G K GVV+++G+ +  A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 10  LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 67
Query: 219 GAMVRPDKVKVGDYPERDP 237
           G      KV    +P   P
Sbjct: 68  GLFAPVHKVTKIGFPSTTP 86

>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Dynactin 1 Length = 112

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 132 KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWV 191
           K  V S+ PS      S    E     + VG R EV     RG V YVG A   A G WV
Sbjct: 12  KRHVYSRTPSG-----SRMSAEASARPLRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWV 65
Query: 192 GIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV 229
           G+  DE  GK++G V+G +YF C   HG  VR  +++V
Sbjct: 66  GVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQV 103

>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 170-Related Protein Clipr59 Length = 95

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
            + +GDR  +D G K G +++ G  E  A G WVG++ DEP GK++G V GVRYF CPP 
Sbjct: 16  GLRLGDRVLLD-GQKTGTLRFCGTTE-FASGQWVGVELDEPEGKNDGSVGGVRYFICPPK 73
Query: 218 HGAMVRPDKV 227
            G      K+
Sbjct: 74  QGLFASVSKI 83

>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed With The Cap-Gly Domain Of P150glued Length = 93

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
           + VG R EV     RG V YVG A   A G WVG+  DE  GK++G V+G +YF C   H
Sbjct: 13  LRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 71
Query: 219 GAMVRPDKVKV 229
           G  VR  +++V
Sbjct: 72  GIFVRQSQIQV 82

>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human Dynactin-1 (P150- Glued) Length = 97

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
           + VG R EV     RG V YVG A   A G WVG+  DE  GK++G V+G +YF C   H
Sbjct: 13  LRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 71
Query: 219 GAMVRPDKVKV 229
           G  VR  +++V
Sbjct: 72  GIFVRQSQIQV 82

>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of P150glued Length = 71

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
           + VG R EV     RG V YVG     A G WVG+  DE  GK++G V+G +YF C   H
Sbjct: 1   LRVGSRVEVIGKGHRGTVAYVGMT-LFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 59
Query: 219 GAMVRPDKVKV 229
           G  VR  +++V
Sbjct: 60  GIFVRQSQIQV 70

>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of Human Dynactin-1 (P150-Glued) In Complex With Human Eb1 C- Terminal Hexapeptide Length = 97

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
           + VG R EV     RG V YVG     A G WVG+  DE  GK++G V+G +YF C   H
Sbjct: 13  LRVGSRVEVIGKGHRGTVAYVGMT-LFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 71
Query: 219 GAMVRPDKVKV 229
           G  VR  +++V
Sbjct: 72  GIFVRQSQIQV 82

>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Kinesin- Like Protein Kif13b Length = 100

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 172 KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK 228
           K GVV+YVG A+    G WVG++ D P GK++G + G +YF C P +G +VRP +V+
Sbjct: 36  KTGVVRYVGPAD-FQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVR 91

>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Centrosome-Associated Protein Cap350 Length = 122

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 133 EKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVG 192
           E+ ++++PS     L++    D   +  +GDR  +    + G++++ G+  S A GFW G
Sbjct: 11  EQQVTESPS-----LASVPTADELFDFHIGDRVLIG-NVQPGILRFKGET-SFAKGFWAG 63
Query: 193 IQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 227
           ++ D+P G +NG   G+ YFEC   HG    P K+
Sbjct: 64  VELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKI 98

>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human Restin- Like Protein 2 Reveals A Swapped-Dimer Length = 96

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
           + +G+R  V  G + G +++ G   + APG+W GI+ ++P GK++G V GV+YF C P +
Sbjct: 11  LRLGERVLVV-GQRLGTIRFFGTT-NFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRY 68
Query: 219 GAMVRPDKVK 228
           G    P +V+
Sbjct: 69  GIFAPPSRVQ 78

>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse 1700024k14rik Hypothetical Protein Length = 102

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
            + +GDR  V  G K G +++ G  E  A G W GI+ DEP GK+NG V  V+YF+C P 
Sbjct: 24  GLKLGDRV-VIAGQKVGTLRFCGTTE-FASGQWAGIELDEPEGKNNGSVGRVQYFKCAPK 81
Query: 218 HGAMVRPDKV 227
           +G      K+
Sbjct: 82  YGIFAPLSKI 91

>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse 1700024k14rik Hypothetical Protein Length = 91

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 175 VVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 227
            V+YVG  +  A G W+G++     GK++G V   RYF C P +G +VRP +V
Sbjct: 29  TVRYVGPTD-FASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRV 80

>pdb|4B6W|A Chain A, Architecture Of Trypanosoma Brucei Tubulin-Binding Cofactor B Length = 86

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTD 73
          V + +THS  +    + R+ L  ++ES+K+ ++    T      L+L DD    +     
Sbjct: 3  VKVSLTHSASRXRVPEKRYGLAQTIESIKENVFTHFATPPEYXQLQLIDDRGITIEKNXA 62
Query: 74 NSRPLGFYSPLQGYRLHVIDLDPS 97
          N + LG+Y     + +HV+DL PS
Sbjct: 63 NDKQLGYYQCRDEFVIHVVDLQPS 86

>pdb|1V6E|A Chain A, Solution Structure Of A N-Terminal Ubiquitin-Like Domain In Mouse Tubulin-Specific Chaperone B Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 10  GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69
           G   V++ ++ S+L SF ++ R+   +++   K KL    G+  + M LELY   +   +
Sbjct: 4   GSSGVMVFIS-SSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYS 62
Query: 70  ALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSG 102
            L      LG Y    G R+HVID   S  +SG
Sbjct: 63  KLDQEDALLGSYPVDDGCRIHVIDHSGSGPSSG 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
1lpl_A	95	Hypothetical 25.4 kDa protein F53F4.3 in chromosom	2e-37
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	5e-36
2e3h_A	90	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	1e-34
2cow_A	100	Kinesin-like protein KIF13B; microtubule binding,	2e-33
1txq_A	93	Dynactin 1; protein complex, structural protein/pr	4e-33
2coy_A	112	Dynactin-1; microtubule binding, cytoskeleton asso	5e-33
2e3i_A	86	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	6e-33
2cp3_A	84	CLIP-115, KIAA0291; microtubule binding, cytoskele	7e-33
2cp6_A	172	Restin; microtubule binding, cytoskeleton associat	1e-32
2cp2_A	95	CLIP-115, KIAA0291; microtubule binding, cytoskele	1e-32
2coz_A	122	CAP350, centrosome-associated protein 350; microtu	2e-32
1whh_A	102	Clipr-59; microtubule binding, trans-golgi network	6e-32
1whg_A	113	Tubulin specific chaperone B; microtubule binding,	2e-31
1whk_A	91	1700024K14RIK, riken cDNA 1700024K14; structural g	2e-31
3rdv_A	72	CAP-Gly domain-containing linker protein 1; cytosk	6e-31
2cp0_A	95	Clipr-59 protein, clipr59; microtubule binding, cy	7e-31
2cp5_A	141	Restin; microtubule binding, cytoskeleton associat	7e-31
2z0w_A	96	CAP-Gly domain-containing linker protein 4; altern	9e-31
2kj6_A	97	Tubulin folding cofactor B; methods development, N	1e-30
1whj_A	102	1700024K14RIK, riken cDNA 1700024K14; structural g	2e-30
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	1e-29
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	1e-26
1whl_A	95	Cylindromatosis tumor suppressor CYLD; deubiquitin	1e-26
1ixd_A	104	Cylindromatosis tumour-suppressor CYLD; structural	4e-26
1whm_A	92	Cylindromatosis tumor suppressor CYLD; deubiquitin	1e-10

>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A Length = 95

 Score =  125 bits (316), Expect = 2e-37
 Identities = 49/95 (51%), Positives = 62/95 (65%), Gaps = 4/95 (4%)

Query: 148 SNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNG 204
           S+   E+   NI VG+RCEV  GA   +RG V YVG  +    G WVG++YDEP+GK++G
Sbjct: 1   SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKF-KEGVWVGVKYDEPVGKNDG 59

Query: 205 IVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFE 239
            V GVRYF+C P +G  VRP  VKVGD+PE    E
Sbjct: 60  SVAGVRYFDCDPKYGGFVRPVDVKVGDFPELSIDE 94

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score =  123 bits (309), Expect = 5e-36
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 4/115 (3%)

Query: 20  HSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLG 79
            +N   F  + ++P  MS+  +K KL    GT+V+SM ++L+D  +     LTD ++ L 
Sbjct: 12  TTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLK 71

Query: 80  FYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEK 134
                 GYR+H +D+   +       +D S+VEKY +S++ Y KR  + R +K+K
Sbjct: 72  DLGVRDGYRIHAVDVTGGN----EDFKDESMVEKYEMSDDTYGKRTDSVRAWKKK 122

>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A Length = 90

 Score =  118 bits (298), Expect = 1e-34
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
           + +GDR  V  G K GVV+++G+ +  A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 2   LKIGDRVLV-GGTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 59

Query: 219 GAMVRPDKVKVGDYPERDP 237
           G      KV    +P   P
Sbjct: 60  GLFAPVHKVTKIGFPSTTP 78

>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 100

 Score =  115 bits (290), Expect = 2e-33
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 137 SQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYD 196
           S   S       +   +++   +  G+   V    K GVV+YVG A+    G WVG++ D
Sbjct: 2   SSGSSGQALASDSEEADEVPEWLREGEFVTV-GAHKTGVVRYVGPADF-QEGTWVGVELD 59

Query: 197 EPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 233
            P GK++G + G +YF C P +G +VRP +V+     
Sbjct: 60  LPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATSG 96

>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P Length = 93

 Score =  114 bits (288), Expect = 4e-33
 Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 148 SNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVK 207
           S    E     + VG R EV     RG V YVG     A G WVG+  DE  GK++G V+
Sbjct: 2   SRMSAEASARPLRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQ 60

Query: 208 GVRYFECPPLHGAMVRPDKVKVGDYP 233
           G +YF C   HG  VR  +++V +  
Sbjct: 61  GRKYFTCDEGHGIFVRQSQIQVFEDG 86

>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 112

 Score =  114 bits (288), Expect = 5e-33
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 137 SQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYD 196
            ++  +     S    E     + VG R EV     RG V YVG     A G WVG+  D
Sbjct: 12  KRHVYSRTPSGSRMSAEASARPLRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILD 70

Query: 197 EPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD 231
           E  GK++G V+G +YF C   HG  VR  +++V +
Sbjct: 71  EAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFE 105

>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1 Length = 86

 Score =  113 bits (286), Expect = 6e-33
 Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
           +  VG+R  V  G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C PL
Sbjct: 2   DFRVGERVWV-NGNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59

Query: 218 HGAMVRPDKVKVGDYPERDP 237
            G   RP K+      E + 
Sbjct: 60  KGIFTRPSKLTRKVQAEDEA 79

>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 84

 Score =  113 bits (285), Expect = 7e-33
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
           S + +GDR  V  G K GVV+YVG+ +  A G W G++ DEPLGK++G V G RYF+CPP
Sbjct: 6   SGLRLGDRVLV-GGTKTGVVRYVGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCPP 63

Query: 217 LHGAMVRPDKV-KVGDYP 233
             G      KV ++G  P
Sbjct: 64  KFGLFAPIHKVIRIGSGP 81

>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 172

 Score =  116 bits (291), Expect = 1e-32
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 137 SQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYD 196
                ++ N      ++     + +GDR  V  G K GVV+++G+ +  A G W G++ D
Sbjct: 17  KTASESISNLSEAGSIKKGERELKIGDRVLV-GGTKAGVVRFLGETD-FAKGEWCGVELD 74

Query: 197 EPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFE 239
           EPLGK++G V G RYF+C P +G      KV    +P   P +
Sbjct: 75  EPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTPAK 117

>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A Length = 95

 Score =  113 bits (284), Expect = 1e-32
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 153 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 212
           +D   +  VG+R  V  G K GVV+Y+G+ +  APG W G+  D+P+GK++G V GVRYF
Sbjct: 13  DDFLGDFVVGERVWV-NGVKPGVVQYLGETQF-APGQWAGVVLDDPVGKNDGAVGGVRYF 70

Query: 213 ECPPLHGAMVRPDKVKVGDYP 233
           ECP L G   RP K+      
Sbjct: 71  ECPALQGIFTRPSKLTRQPSG 91

>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 122

 Score =  113 bits (285), Expect = 2e-32
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 7/111 (6%)

Query: 132 KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWV 191
            E+ ++++PS      ++    D   +  +GDR  +    + G++++ G+    A GFW 
Sbjct: 10  HEQQVTESPSL-----ASVPTADELFDFHIGDRVLI-GNVQPGILRFKGETSF-AKGFWA 62

Query: 192 GIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDE 242
           G++ D+P G +NG   G+ YFEC   HG    P K+        D  + +E
Sbjct: 63  GVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIPENFDDYVDINE 113

>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1 Length = 102

 Score =  112 bits (281), Expect = 6e-32
 Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
           +   VGD+  V  G K+G+V++ G+ +  APG+W GI+ D+P GKH+G V GVRYF C P
Sbjct: 24  AKAEVGDQVLV-AGQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCAP 81

Query: 217 LHGAMVRPDKV-KVGDYP 233
            HG      ++ ++G  P
Sbjct: 82  RHGVFAPASRIQRIGSGP 99

>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1 Length = 113

 Score =  111 bits (278), Expect = 2e-31
 Identities = 47/105 (44%), Positives = 63/105 (60%), Gaps = 6/105 (5%)

Query: 132 KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPG 188
            E++ +Q  +    +LS    +   S I+VG RCEV   D   +RG V YVG  +   PG
Sbjct: 8   NEELRAQQEAEAAQRLSEE--KAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTD-FKPG 64

Query: 189 FWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 233
           +WVG++YDEPLGK++G V G RYFEC   +GA V+P  V VGD  
Sbjct: 65  YWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDSG 109

>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1 Length = 91

 Score =  110 bits (276), Expect = 2e-31
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 153 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 212
            +    +  G +  +    +   V+YVG  +  A G W+G++     GK++G V   RYF
Sbjct: 7   GEGTVKLHEGSQVLLTSSNEMATVRYVGPTD-FASGIWLGLELRSAKGKNDGAVGDKRYF 65

Query: 213 ECPPLHGAMVRPDKVKVGDYPERDP 237
            C P +G +VRP +V          
Sbjct: 66  TCKPNYGVLVRPSRVTYRGISGPSS 90

>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A Length = 72

 Score =  108 bits (272), Expect = 6e-31
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
           +  VG+R  V  G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C PL
Sbjct: 2   DFRVGERVWV-NGNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59

Query: 218 HGAMVRPDKVK 228
            G   RP K+ 
Sbjct: 60  KGIFTRPSKLT 70

>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 95

 Score =  109 bits (273), Expect = 7e-31
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
             + +GDR  +  G K G +++ G  E  A G WVG++ DEP GK++G V GVRYF CPP
Sbjct: 15  LGLRLGDRVLL-DGQKTGTLRFCGTTE-FASGQWVGVELDEPEGKNDGSVGGVRYFICPP 72

Query: 217 LHGAMVRPDKVKVGD 231
             G      K+    
Sbjct: 73  KQGLFASVSKISKAV 87

>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 141

 Score =  110 bits (276), Expect = 7e-31
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 137 SQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYD 196
           + +     +  S+   E+   +  VG+R  V  G K G ++++G+ +  APG W GI  D
Sbjct: 43  TISSEKASSTPSSETQEEFVDDFRVGERVWV-NGNKPGFIQFLGETQ-FAPGQWAGIVLD 100

Query: 197 EPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 233
           EP+GK++G V GVRYF+C PL G   RP K+      
Sbjct: 101 EPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVSG 137

>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 96

 Score =  108 bits (272), Expect = 9e-31
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
             + +G+R  V  G + G +++ G     APG+W GI+ ++P GK++G V GV+YF C P
Sbjct: 9   GELRLGERVLV-VGQRLGTIRFFGTTN-FAPGYWYGIELEKPHGKNDGSVGGVQYFSCSP 66

Query: 217 LHGAMVRPDKVKVGD 231
            +G    P +V+   
Sbjct: 67  RYGIFAPPSRVQRVT 81

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score =  108 bits (271), Expect = 1e-30
 Identities = 64/91 (70%), Positives = 78/91 (85%)

Query: 6  QQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTN 65
              GD+SV L +TH+NLKSFSAD RF  QMSVE+VK+KLW+KCGTSVNSM+LELYDD+ 
Sbjct: 7  HHSHGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSG 66

Query: 66 TKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 96
          +KVA L+D+SRPLGF+SP  G+RLH+IDLDP
Sbjct: 67 SKVAVLSDDSRPLGFFSPFDGFRLHIIDLDP 97

>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1 Length = 102

 Score =  107 bits (270), Expect = 2e-30
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
             + +GDR  +  G K G +++ G  E  A G W GI+ DEP GK+NG V  V+YF+C P
Sbjct: 23  LGLKLGDRVVI-AGQKVGTLRFCGTTE-FASGQWAGIELDEPEGKNNGSVGRVQYFKCAP 80

Query: 217 LHGAMVRPDKVKVGD 231
            +G      K+    
Sbjct: 81  KYGIFAPLSKISKLK 95

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score =  105 bits (264), Expect = 1e-29
 Identities = 28/92 (30%), Positives = 43/92 (46%)

Query: 11  DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAA 70
             S ++    S+L SF ++ R+   +++   K KL    G+  + M LELY   +   + 
Sbjct: 4   GSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSK 63

Query: 71  LTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSG 102
           L      LG Y    G R+HVID   S  +SG
Sbjct: 64  LDQEDALLGSYPVDDGCRIHVIDHSGSGPSSG 95

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} Length = 95

 Score = 98.4 bits (245), Expect = 1e-26
 Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 6  QQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTN 65
                + + + V++S+  + + +V+    ++V  +K KL    G    +M ++++   +
Sbjct: 8  HSHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKG-D 66

Query: 66 TKVAALTDNSRPLGFYSPLQGYRLHVID 93
          T V+ + +N   LG+Y+   G RLHV+D
Sbjct: 67 TCVSTMDNNDAQLGYYANSDGLRLHVVD 94

>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 95

 Score = 97.9 bits (244), Expect = 1e-26
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 157 SNITVGDRCEV----DPGAKRGVVKYVG--QAESIAPGFWVGIQYDE---PLGKHNGIVK 207
           S I VG   +V          GVV++ G   AE    G + G++  E     G  +G+ +
Sbjct: 6   SGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQ 65

Query: 208 GVRYFECPPLHGAMVRPDKVKVGDYP 233
           G + F+C    G  V  DK+++ +  
Sbjct: 66  GKQLFQCDEDCGVFVALDKLELIESG 91

>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 104

 Score = 97.1 bits (242), Expect = 4e-26
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 157 SNITVGDRCEVDPGAKR-GVVKYVGQAESIAPGFWVGIQYDEPL-GKHNGIVKGVRYFEC 214
             + VG   EV       GV++++GQ          G++ ++   G  +G  +G RYF C
Sbjct: 16  HGLEVGSLAEVKENPPFYGVIRWIGQPPG-LNEVLAGLELEDECAGCTDGTFRGTRYFTC 74

Query: 215 PPLHGAMVRPDKVKV-GDYPERDP 237
                  V+    +    +    P
Sbjct: 75  ALKKALFVKLKSCRPDSRFASLQP 98

>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 92

 Score = 55.6 bits (133), Expect = 1e-10
 Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 158 NITVGDRCEV--DPGAKRGVVKYVGQ-AESIAPGFWVGIQYDEPLGKHNGIVKGVRYFEC 214
            + +  R  +      + G V +        + G++VG+  D P+G  +G   GV+    
Sbjct: 9   PLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSF 68

Query: 215 P-PLHGAMVRPDKV 227
                  ++  + +
Sbjct: 69  ACVESTILLHINDI 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	100.0
4b6m_A	84	Tubulin-specific chaperone, putative; structural p	100.0
1lpl_A	95	Hypothetical 25.4 kDa protein F53F4.3 in chromosom	100.0
1whg_A	113	Tubulin specific chaperone B; microtubule binding,	100.0
2e3h_A	90	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	99.97
1whh_A	102	Clipr-59; microtubule binding, trans-golgi network	99.96
2cp6_A	172	Restin; microtubule binding, cytoskeleton associat	99.96
3rdv_A	72	CAP-Gly domain-containing linker protein 1; cytosk	99.96
2e3i_A	86	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	99.96
1txq_A	93	Dynactin 1; protein complex, structural protein/pr	99.96
2cp2_A	95	CLIP-115, KIAA0291; microtubule binding, cytoskele	99.96
2coz_A	122	CAP350, centrosome-associated protein 350; microtu	99.95
2cp3_A	84	CLIP-115, KIAA0291; microtubule binding, cytoskele	99.95
1whk_A	91	1700024K14RIK, riken cDNA 1700024K14; structural g	99.95
2z0w_A	96	CAP-Gly domain-containing linker protein 4; altern	99.95
1whl_A	95	Cylindromatosis tumor suppressor CYLD; deubiquitin	99.95
1ixd_A	104	Cylindromatosis tumour-suppressor CYLD; structural	99.95
2coy_A	112	Dynactin-1; microtubule binding, cytoskeleton asso	99.95
2cp0_A	95	Clipr-59 protein, clipr59; microtubule binding, cy	99.95
1whj_A	102	1700024K14RIK, riken cDNA 1700024K14; structural g	99.95
2cow_A	100	Kinesin-like protein KIF13B; microtubule binding,	99.95
2cp5_A	141	Restin; microtubule binding, cytoskeleton associat	99.95
1whm_A	92	Cylindromatosis tumor suppressor CYLD; deubiquitin	99.95
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.93
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.89
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.84
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.84
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.84
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.55
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.49
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.49
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.47
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.47
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.45
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.44
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.44
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.44
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.44
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.43
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.42
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.42
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.42
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.42
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.42
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.41
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.41
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.41
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.4
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.4
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.4
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.39
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.39
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.39
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.38
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.37
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.37
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.37
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.37
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.37
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.37
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.36
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.36
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.35
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.35
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.35
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.35
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.34
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.34
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.34
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.34
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.33
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.33
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.33
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.32
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.32
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.32
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.32
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.31
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.3
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.29
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.28
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.28
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.28
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.28
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.27
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.27
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.26
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.26
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.26
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.24
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	98.88
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.21
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.21
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.2
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.18
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.17
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.17
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.16
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.15
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.13
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.13
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.13
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.1
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.1
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.09
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.04
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	98.99
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	98.82
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	98.8
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	98.7
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	98.67
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	98.65
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	98.64
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	98.57
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	98.5
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	98.39
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	98.33
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	97.86
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	97.79
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	97.68
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	97.45
2pjh_A	80	Protein NPL4, nuclear protein localization protein	97.45
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	96.75
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	96.74
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	96.48
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	96.44
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	96.33
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	96.31
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	95.92
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	95.78
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	95.75
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	95.64
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	95.53
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	95.11
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	95.05
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	94.98
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	94.33
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	94.18
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	94.04
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	94.02
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	93.61
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	93.41
1pqs_A	77	Cell division control protein 24; alpha and beta p	93.12
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	92.22
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	91.28
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	90.96
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	89.07
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	88.47
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	88.38
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	87.94
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	81.42

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=100.00  E-value=1.5e-35  Score=235.64  Aligned_cols=119  Identities=33%  Similarity=0.575  Sum_probs=79.3

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      ++.|+|+|+|++.. +..++++++++||++||+||+.++||||++|||++...+|+.+..|++|+++|++|||++|++||
T Consensus         4 ~~~v~l~V~~~~~~-~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ih   82 (122)
T 1t0y_A            4 TEVYDLEITTNATD-FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIH   82 (122)
T ss_dssp             CCEEEEEEEESSCC-SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred             CCEEEEEEEECCCC-ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEE
Confidence            34799999987655 67999999999999999999999999999999999866667665677899999999999999999


Q ss_pred             EeecCCCcccCCCccccCCcceeeecCHHHHhcchhhHHHHHHH
Q 026104           91 VIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEK  134 (243)
Q Consensus        91 VvD~~p~s~~~~~~l~d~s~veky~msee~Y~~r~dtvr~~kk~  134 (243)
                      |+|++|.+  ++  |+|+|+|+||+||+|+|++|+||||+|||+
T Consensus        83 vvd~~p~~--~~--~~d~s~v~ky~~~~e~Y~~r~~tv~~~k~~  122 (122)
T 1t0y_A           83 AVDVTGGN--ED--FKDESMVEKYEMSDDTYGKRTDSVRAWKKK  122 (122)
T ss_dssp             EEECTTCC--CC--------------------------------
T ss_pred             EEeCCCCC--CC--ccccccceeeecCHHHHhcchhHHHHHhhC
Confidence            99999987  33  999999999999999999999999999985

>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}

Probab=100.00  E-value=5.6e-35  Score=217.60  Aligned_cols=81  Identities=49%  Similarity=1.084  Sum_probs=75.0

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCCCC
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPER  235 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~~~  235 (243)
                      +..|+||+||+|.++.++|+|||+|+++..++|+|+|||||+|.||||||++|+|||+|+|+||+||||++|++|||||.
T Consensus         3 m~~i~vG~Rv~v~~~~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~~~~G~Fvr~~~v~~gd~Ppe   82 (84)
T 4b6m_A            3 METIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPNYGGFLRPDQVEVGDFPPE   82 (84)
T ss_dssp             --CCCTTCEEEETTTTEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCCTTSEEEECGGGEEECCCCCC
T ss_pred             ccCcccCCEEEEcCCCeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecCCCeEEEecHHHeEECCcCCC
Confidence            45799999999976789999999999876579999999999999999999999999999999999999999999999996


Q ss_pred             C
Q 026104          236 D  236 (243)
Q Consensus       236 d  236 (243)
                      |
T Consensus        83 ~   83 (84)
T 4b6m_A           83 V   83 (84)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A

Probab=100.00  E-value=1.2e-34  Score=221.19  Aligned_cols=83  Identities=55%  Similarity=1.070  Sum_probs=77.9

Q ss_pred             hhhcCCCCCCCEEEEc-CC--CceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCccc
Q 026104          153 EDLCSNITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV  229 (243)
Q Consensus       153 ~~~~~~~~vG~rv~v~-~~--~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  229 (243)
                      ++.+..++||+||+|. ++  .++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|++
T Consensus         6 ~~~~~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~~v~~   84 (95)
T 1lpl_A            6 EEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKF-KEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKV   84 (95)
T ss_dssp             HHHHHTCCTTCEEEECCTTSCCEEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEEE
T ss_pred             hhhhhcCCCCCEEEEccCCCCceEEEEEEecccCC-CCCEEEEEEccCCCCccCCEECCEEEeEeCCCEEEEEcHHHceE
Confidence            3556689999999996 45  79999999999999 79999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 026104          230 GDYPERD  236 (243)
Q Consensus       230 g~f~~~d  236 (243)
                      ||||++|
T Consensus        85 gdfp~~d   91 (95)
T 1lpl_A           85 GDFPELS   91 (95)
T ss_dssp             SCCCCCC
T ss_pred             CCCCCCC
Confidence            9999988

>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1

Probab=100.00  E-value=1.3e-34  Score=227.25  Aligned_cols=99  Identities=45%  Similarity=0.830  Sum_probs=85.2

Q ss_pred             cCCCchhhhc-----cccchhhhhcCCCCCCCEEEEc-CC--CceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECC
Q 026104          137 SQNPSAVENK-----LSNNYMEDLCSNITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKG  208 (243)
Q Consensus       137 ~~~p~~~~~~-----~~~~~~~~~~~~~~vG~rv~v~-~~--~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G  208 (243)
                      +|||++.++.     +.+++.+..+..+.||+||+|. ++  .++|||||||++++ .+|+|+|||||+|.||||||++|
T Consensus         6 rf~~~~~~~~~~~~~~~~~~~~~~~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G   84 (113)
T 1whg_A            6 SGNEELRAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDF-KPGYWVGVRYDEPLGKNDGSVNG   84 (113)
T ss_dssp             CCCSTHHHHHHHHHHHTTHHHHHHHTTSCSSCEEEECCSSSSCEEEEEEEEEECSS-SSSEEEEEEESSSCCSBBSEETT
T ss_pred             ccChhhhhhhhhHhhhhhhHhhhhhhcCCCCCEEEEecCCCcceEEEEEEecccCC-CCCEEEEEEecCCCCccCCEECC
Confidence            5888864321     1233334556789999999996 44  69999999999999 79999999999999999999999


Q ss_pred             EEeeecCCCceeeecCCCcccCCCCCCC
Q 026104          209 VRYFECPPLHGAMVRPDKVKVGDYPERD  236 (243)
Q Consensus       209 ~rYF~c~~~~G~Fv~~~~v~~g~f~~~d  236 (243)
                      +|||+|+|+||+||||++|++|||||+|
T Consensus        85 ~rYF~C~p~~GiFvr~~~v~~gdfp~~~  112 (113)
T 1whg_A           85 KRYFECQAKYGAFVKPSAVTVGDSGPSS  112 (113)
T ss_dssp             EECSCCCTTTEEEECGGGEEEEECCSSC
T ss_pred             EEEeeeCCCeEEEECHHHeEECCCCCCC
Confidence            9999999999999999999999999976

>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A

Probab=99.97  E-value=2.7e-31  Score=200.65  Aligned_cols=79  Identities=42%  Similarity=0.856  Sum_probs=72.9

Q ss_pred             CCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCCCCCC
Q 026104          158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDP  237 (243)
Q Consensus       158 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~~~d~  237 (243)
                      +++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||+|++|+++|||++.+
T Consensus         1 ~l~vG~rV~V~-g~~~GtVryvG~~~~-~~G~wvGVelDep~GKndGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~p~~~p   78 (90)
T 2e3h_A            1 ELKIGDRVLVG-GTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTP   78 (90)
T ss_dssp             CCCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEEETTSCCC--
T ss_pred             CCcCCCEEEEC-CCCEEEEEEeccCCC-CCCeEEEEEECCCCCCCCCEECCEEeeecCCCcEEEEcHHHeEECCCCCCCc
Confidence            47899999996 578999999999999 8999999999999999999999999999999999999999999999999775


Q ss_pred             C
Q 026104          238 F  238 (243)
Q Consensus       238 ~  238 (243)
                      .
T Consensus        79 ~   79 (90)
T 2e3h_A           79 A   79 (90)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.96  E-value=5.4e-30  Score=197.39  Aligned_cols=78  Identities=42%  Similarity=0.927  Sum_probs=73.1

Q ss_pred             hcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcc-cCCCC
Q 026104          155 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK-VGDYP  233 (243)
Q Consensus       155 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~-~g~f~  233 (243)
                      .+..++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|+ ++|||
T Consensus        22 ~~~~~~VG~RV~V~-g~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~d~p   99 (102)
T 1whh_A           22 EGAKAEVGDQVLVA-GQKQGIVRFYGKTDF-APGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGP   99 (102)
T ss_dssp             SCCSSCTTSEEEET-TTEEEEEEEEEECSS-SSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSCT
T ss_pred             ccccCcCCCEEEEC-CCcEEEEEEeeecCC-CCCeEEEEEeCCCCCcCCCEECCEEeeecCCCcEEEecHHHeEECCCCC
Confidence            35679999999996 678999999999999 8999999999999999999999999999999999999999998 66899


Q ss_pred             C
Q 026104          234 E  234 (243)
Q Consensus       234 ~  234 (243)
                      +
T Consensus       100 ~  100 (102)
T 1whh_A          100 S  100 (102)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=1.2e-29  Score=210.83  Aligned_cols=81  Identities=41%  Similarity=0.822  Sum_probs=76.3

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCCCC
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPER  235 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~~~  235 (243)
                      ...|+||+||+|. +.++|+|||||++++ ..|.|+|||||||.|||||+++|+|||+|.|+||+||+|++|.++|||++
T Consensus        36 ~~~l~VG~RV~V~-g~~~GtVRyvG~v~~-~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kV~~~dfP~~  113 (172)
T 2cp6_A           36 ERELKIGDRVLVG-GTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPST  113 (172)
T ss_dssp             SSCCCSSCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEECCCSSC
T ss_pred             CccCccCCEEEEC-CCceEEEEEeCcCCC-CCCcEEEEEecCCCCccCCEECCEEeeeeCCCeEEEechHHeEECCcCCC
Confidence            4579999999996 679999999999999 89999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q 026104          236 DPF  238 (243)
Q Consensus       236 d~~  238 (243)
                      .+.
T Consensus       114 ~p~  116 (172)
T 2cp6_A          114 TPA  116 (172)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            754

>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A

Probab=99.96  E-value=1.4e-29  Score=184.02  Aligned_cols=69  Identities=48%  Similarity=1.029  Sum_probs=65.8

Q ss_pred             CCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcc
Q 026104          158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK  228 (243)
Q Consensus       158 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  228 (243)
                      .|+||+||+|. +.++|+|||+|++++ .+|+|+|||||+|.||||||++|+|||+|+|+||+||||++|+
T Consensus         2 ~~~vG~rv~v~-g~~~G~VryvG~~~~-~~g~w~GVeld~p~GkndGsv~G~rYF~c~p~~G~Fv~~~kvs   70 (72)
T 3rdv_A            2 DFRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLT   70 (72)
T ss_dssp             CCCTTCEEEET-TTEEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESCCCSTTCEEEECGGGEE
T ss_pred             CcccCCEEEEC-CCCEEEEEEeeeCCC-CCceEEEEEECCCCCccCCEECCEEeCccCCCCEEEecHHHcc
Confidence            58999999997 578999999999999 8999999999999999999999999999999999999999985

>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=2.6e-29  Score=188.40  Aligned_cols=75  Identities=44%  Similarity=0.937  Sum_probs=69.6

Q ss_pred             CCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC-CCCC
Q 026104          158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DYPE  234 (243)
Q Consensus       158 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f~~  234 (243)
                      .|+||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|... +|++
T Consensus         2 ~~~vG~rv~v~-g~~~GtVryvG~~~~-~~G~wvGVelDep~GKndGsv~G~rYF~c~~~~G~Fvr~~~v~~~~~~~~   77 (86)
T 2e3i_A            2 DFRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVQAED   77 (86)
T ss_dssp             CCCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEESSCCC--
T ss_pred             CccCCCEEEEC-CCcEEEEEEeeeCCC-CCCcEEEEEeCCCCCccCCEECCEEeeecCCCeEEEEcHHHcccccchhh
Confidence            58999999996 578999999999999 899999999999999999999999999999999999999999988 5764

>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P

Probab=99.96  E-value=4e-29  Score=189.99  Aligned_cols=75  Identities=41%  Similarity=0.709  Sum_probs=69.2

Q ss_pred             hcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC
Q 026104          155 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  230 (243)
Q Consensus       155 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  230 (243)
                      .+..++||+||.|....++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|++.
T Consensus         9 ~~~~~~vG~rv~v~~~~~~GtVryvG~~~~-~~G~wvGVelDep~GKndGsv~G~rYF~C~~~~G~Fvr~~~v~~~   83 (93)
T 1txq_A            9 SARPLRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVF   83 (93)
T ss_dssp             --CCCCTTCEEEETTTCCEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESCCCCTTCEEEECGGGEEEC
T ss_pred             ccccCCCCCEEEECCCCeEEEEEEeeecCC-CCCcEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHeEEc
Confidence            356799999999974469999999999999 899999999999999999999999999999999999999999976

>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A

Probab=99.96  E-value=3.8e-29  Score=190.56  Aligned_cols=76  Identities=47%  Similarity=0.976  Sum_probs=71.1

Q ss_pred             hhcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCC
Q 026104          154 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD  231 (243)
Q Consensus       154 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~  231 (243)
                      +.+..++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|....
T Consensus        14 ~~~~~~~vG~rV~V~-g~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~kv~~~p   89 (95)
T 2cp2_A           14 DFLGDFVVGERVWVN-GVKPGVVQYLGETQF-APGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQP   89 (95)
T ss_dssp             SSCCSCCTTCEEEGG-GSCEEEEEEEEECSS-SCSEEEEEEESSSCSSBBSEETTEECCCCCTTTEEEECGGGCCSSC
T ss_pred             hhhhcCcCCCEEEEC-CceEEEEEEecccCC-CCCEEEEEEecCCCCccCCEECCEEecccCCCeEEEEcHHHCccCC
Confidence            456789999999997 578999999999999 8999999999999999999999999999999999999999998763

>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=6.3e-29  Score=196.85  Aligned_cols=77  Identities=35%  Similarity=0.817  Sum_probs=71.3

Q ss_pred             hhcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCC
Q 026104          154 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP  233 (243)
Q Consensus       154 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~  233 (243)
                      +.+..++||+||.|. +.++|+|||||++++ .+|+|+|||||+|.||||||++|+|||+|+++||+||||++|.  +||
T Consensus        27 ~~~~~l~VG~RV~V~-g~~~GtVRyvG~v~~-~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kv~--~~p  102 (122)
T 2coz_A           27 DELFDFHIGDRVLIG-NVQPGILRFKGETSF-AKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKIS--HIP  102 (122)
T ss_dssp             CSCSSCCTTEEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEE--CCC
T ss_pred             cccccCcCCCEEEEC-CCcEEEEEEecccCC-CCCeEEEEEeCCCCCccCCEECCEEeeecCCCcEEEecHHHCc--cCC
Confidence            445689999999996 579999999999999 8999999999999999999999999999999999999999998  566


Q ss_pred             C
Q 026104          234 E  234 (243)
Q Consensus       234 ~  234 (243)
                      +
T Consensus       103 e  103 (122)
T 2coz_A          103 E  103 (122)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=1e-28  Score=184.44  Aligned_cols=76  Identities=46%  Similarity=0.846  Sum_probs=69.8

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCC
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP  233 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~  233 (243)
                      ...++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|..=+.+
T Consensus         5 ~~~~~vG~rv~v~-g~~~GtVryvG~~~~-~~G~wvGVelDep~GkndGsv~G~rYF~c~~~~G~Fv~~~kv~~~~~~   80 (84)
T 2cp3_A            5 SSGLRLGDRVLVG-GTKTGVVRYVGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIGSG   80 (84)
T ss_dssp             SCSCCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEESSCCCTTTEEEEEGGGEEECCCS
T ss_pred             ccccccCCEEEEC-CCCeEEEEEeccCCC-CCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEEcHHHeEEcccC
Confidence            3569999999996 578999999999999 899999999999999999999999999999999999999999765443

>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.95  E-value=5.3e-29  Score=188.47  Aligned_cols=77  Identities=30%  Similarity=0.649  Sum_probs=71.2

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCC
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP  233 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~  233 (243)
                      ...++||+||+|....++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++...+
T Consensus        10 ~~~~~vG~rV~V~~~~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~~   86 (91)
T 1whk_A           10 TVKLHEGSQVLLTSSNEMATVRYVGPTDF-ASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYRGIS   86 (91)
T ss_dssp             CCCCCSSCEEEESSSCCEEEECCCEECSS-SSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECCCCC
T ss_pred             CccccCCCEEEECCCCeEEEEEEeeeCCC-CCCeEEEEEeCCCCCcCCCEECCEEEeecCCCeEEEEchHHcEEcCCC
Confidence            45799999999974479999999999999 899999999999999999999999999999999999999999876544

>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}

Probab=99.95  E-value=5.9e-29  Score=189.94  Aligned_cols=75  Identities=36%  Similarity=0.811  Sum_probs=68.0

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC-CC
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DY  232 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f  232 (243)
                      +..++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|... +|
T Consensus         8 ~~~~~vG~rV~V~-g~~~GtVryvG~~~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~~v~~~~~~   83 (96)
T 2z0w_A            8 EGELRLGERVLVV-GQRLGTIRFFGTTNF-APGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDS   83 (96)
T ss_dssp             ---CCTTCCCCCC-CCCCEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESSCCCTTSEEEECGGGCCCTTC-
T ss_pred             cccCCCCCEEEEC-CCcEEEEEEeccCCC-CCCeEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHceeccch
Confidence            4569999999996 678999999999999 899999999999999999999999999999999999999999877 44

>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=1.3e-28  Score=187.93  Aligned_cols=78  Identities=28%  Similarity=0.495  Sum_probs=70.7

Q ss_pred             cCCCCCCCEEEEc-CC---CceeEEEEecccC---CCCCccEEEEEEeCC---CCccCcEECCEEeeecCCCceeeecCC
Q 026104          156 CSNITVGDRCEVD-PG---AKRGVVKYVGQAE---SIAPGFWVGIQYDEP---LGKHNGIVKGVRYFECPPLHGAMVRPD  225 (243)
Q Consensus       156 ~~~~~vG~rv~v~-~~---~~~G~vryvG~~~---~~~~g~w~GVelDep---~GkndGs~~G~rYF~c~~~~G~Fv~~~  225 (243)
                      +..|+||+||+|. ++   .++|+|||+|+++   + .+|.|+|||||+|   .||||||++|+|||+|+|+||+||||+
T Consensus         5 ~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~-~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~~   83 (95)
T 1whl_A            5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERT-VSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALD   83 (95)
T ss_dssp             CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSS-CCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGG
T ss_pred             cccCcCCCEEEEecCCCccceeEEEEEeCccCcccC-CCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcHH
Confidence            4579999999995 23   4899999999998   5 7999999999999   899999999999999999999999999


Q ss_pred             CcccCC-CCC
Q 026104          226 KVKVGD-YPE  234 (243)
Q Consensus       226 ~v~~g~-f~~  234 (243)
                      +|++.+ .|.
T Consensus        84 ~v~~~~~~p~   93 (95)
T 1whl_A           84 KLELIESGPS   93 (95)
T ss_dssp             GEEECCSCSC
T ss_pred             HeEEcCcCCC
Confidence            999985 553

>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=2e-28  Score=189.41  Aligned_cols=81  Identities=25%  Similarity=0.507  Sum_probs=74.3

Q ss_pred             cCCCCCCCEEEEcC-CCceeEEEEecccCCCCCccEEEEEE-eCCCCccCcEECCEEeeecCCCceeeecCCCcccC-CC
Q 026104          156 CSNITVGDRCEVDP-GAKRGVVKYVGQAESIAPGFWVGIQY-DEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DY  232 (243)
Q Consensus       156 ~~~~~vG~rv~v~~-~~~~G~vryvG~~~~~~~g~w~GVel-Dep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f  232 (243)
                      ...|+||+||+|.. +.++|+|||||++++ .+|.|+|||| |+|.|||||+++|+|||+|.|+||+||||++|..+ .|
T Consensus        15 ~~~l~VG~RV~V~~~~~~~GtVryvG~v~~-~~G~wvGVEldDep~GKnDGsv~G~rYF~C~p~~G~FVr~~~v~~~~rf   93 (104)
T 1ixd_A           15 SHGLEVGSLAEVKENPPFYGVIRWIGQPPG-LNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRF   93 (104)
T ss_dssp             SSCCCTTSEEEECSSSCCCEEEEEEECCSS-SCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEECCTT
T ss_pred             CcccccCCEEEECcCCCcEEEEEEecccCC-CCceEEEEEecCCCCCCCCCEECCEEeeecCCCcEEEEcHHHceecccc
Confidence            45799999999962 379999999999999 7999999999 89999999999999999999999999999999998 59


Q ss_pred             CCCCC
Q 026104          233 PERDP  237 (243)
Q Consensus       233 ~~~d~  237 (243)
                      ..++.
T Consensus        94 ~~~~~   98 (104)
T 1ixd_A           94 ASLQP   98 (104)
T ss_dssp             CCCCS
T ss_pred             ccCCC
Confidence            87653

>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=1.9e-28  Score=191.73  Aligned_cols=75  Identities=41%  Similarity=0.730  Sum_probs=70.3

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCC
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD  231 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~  231 (243)
                      +..|+||+||.|....++|+|||||++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++.+
T Consensus        31 ~~~l~VG~RV~V~~~g~~GtVRyvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFVr~~~v~~~~  105 (112)
T 2coy_A           31 ARPLRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFE  105 (112)
T ss_dssp             CCCCCTTCEEEETTTCCEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEECSCCCTTTEEEECGGGEEECC
T ss_pred             cccCCCCCEEEECCCCeEEEEEEeeecCC-CCCcEEEEEECCCCCCCCCEECCEEeeecCCCeEEEEchHHeEEcC
Confidence            45799999999974469999999999999 8999999999999999999999999999999999999999999874

>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=1.1e-28  Score=188.01  Aligned_cols=73  Identities=42%  Similarity=0.863  Sum_probs=68.8

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  230 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  230 (243)
                      +..++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|...
T Consensus        14 ~~~~~vG~RV~V~-g~~~GtVryvG~v~~-~~G~wvGVelDep~GKnDGsv~G~rYF~C~~~~G~Fv~~~kv~~~   86 (95)
T 2cp0_A           14 ALGLRLGDRVLLD-GQKTGTLRFCGTTEF-ASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKA   86 (95)
T ss_dssp             HHTCCTTCEEEET-TTEEEEEEEEECCSS-SCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEEC
T ss_pred             ccCCCCCCEEEEC-CCCeEEEEEecccCC-CCCcEEEEEecCCCCcCCCEECCEEeeecCCCcEEEEcHHHeecC
Confidence            4579999999996 678999999999999 899999999999999999999999999999999999999999865

>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.95  E-value=1.9e-28  Score=188.74  Aligned_cols=77  Identities=38%  Similarity=0.697  Sum_probs=71.2

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC-CCCC
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DYPE  234 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f~~  234 (243)
                      +..++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|.|+||+||++++|..- +++|
T Consensus        22 ~~~~~vG~RV~V~-g~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~~~~   99 (102)
T 1whj_A           22 SLGLKLGDRVVIA-GQKVGTLRFCGTTEF-ASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSGP   99 (102)
T ss_dssp             HHTCCTTCEEEET-TTEEEEEEEEEECSS-SCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEESSSCCC
T ss_pred             hhcCcCCCEEEEC-CCCEEEEEEeeecCC-CCCeEEEEEeCCCCCccCCEECCEEecccCCCeEEEEeHHHccccCCCCC
Confidence            4579999999996 678999999999999 899999999999999999999999999999999999999999865 5655

>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=5e-28  Score=185.80  Aligned_cols=77  Identities=39%  Similarity=0.750  Sum_probs=71.0

Q ss_pred             hcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC-CCC
Q 026104          155 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DYP  233 (243)
Q Consensus       155 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f~  233 (243)
                      ....|+||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|.|+||+||||++|+.- ..|
T Consensus        20 ~~~~l~vG~rV~V~-g~~~GtVryvG~~~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~~~p   97 (100)
T 2cow_A           20 VPEWLREGEFVTVG-AHKTGVVRYVGPADF-QEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATSGP   97 (100)
T ss_dssp             CCSSCCTTCEEECS-SSCEEEEEEEECCSS-SSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEECCCCS
T ss_pred             CCccccCCCEEEEC-CCcEEEEEEeeeCCC-CCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEecHHHeeECCCCC
Confidence            34569999999996 579999999999999 899999999999999999999999999999999999999999876 455

>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=5.8e-28  Score=195.26  Aligned_cols=75  Identities=44%  Similarity=0.956  Sum_probs=70.8

Q ss_pred             hhcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC
Q 026104          154 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  230 (243)
Q Consensus       154 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  230 (243)
                      +.+..|+||+||+|. +.++|+|||+|++++ ..|.|+|||||+|.|||||+++|+|||+|.++||+||||++|..+
T Consensus        60 ~~~~~l~VG~RV~V~-G~~~GtVRyvG~v~~-~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVrp~kv~~~  134 (141)
T 2cp5_A           60 EFVDDFRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRK  134 (141)
T ss_dssp             CCCCCCCTTCEEEET-TSCEEEEEEEEECSS-SSSEEEEEEESSSCCSCBSEETTEESSCCCTTTEEEECGGGEESS
T ss_pred             hhhhcCcCCCEEEEC-CCcEEEEEEeeecCC-CCCcEEEEEeCCCCCccCCEECCEEeeecCCCcEEEechHHeeec
Confidence            456789999999997 678999999999999 899999999999999999999999999999999999999999877

>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=7.2e-28  Score=181.31  Aligned_cols=73  Identities=18%  Similarity=0.393  Sum_probs=65.6

Q ss_pred             hcCCCCCCCEEEEcCC--CceeEEEEecccCCC-CCccEEEEEEeCCCCccCcEECCEEee-ecCCCceeeecCCCc
Q 026104          155 LCSNITVGDRCEVDPG--AKRGVVKYVGQAESI-APGFWVGIQYDEPLGKHNGIVKGVRYF-ECPPLHGAMVRPDKV  227 (243)
Q Consensus       155 ~~~~~~vG~rv~v~~~--~~~G~vryvG~~~~~-~~g~w~GVelDep~GkndGs~~G~rYF-~c~~~~G~Fv~~~~v  227 (243)
                      .+..|+||+||+|.++  .+||||||+|++++. ..|+|+|||||||+||||||++|+||| .|.++||+||++..+
T Consensus         6 ~~~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~~~~g~fV~~~d~   82 (92)
T 1whm_A            6 SGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDI   82 (92)
T ss_dssp             CSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGE
T ss_pred             cccCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccCCCcceEcccccC
Confidence            3557999999999744  499999999999873 369999999999999999999999999 999999999998765

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.93  E-value=2.8e-26  Score=171.96  Aligned_cols=86  Identities=29%  Similarity=0.512  Sum_probs=81.9

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      ++|+|.||||++..+..|+||++++||++||+||+.++||||++|||+|++.++.....+++|+++|++|+|++|++|||
T Consensus         1 s~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl   80 (86)
T 4b6w_A            1 SVVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV   80 (86)
T ss_dssp             CEEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred             CEEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence            57999999999988999999999999999999999999999999999999988888777889999999999999999999


Q ss_pred             eecCCC
Q 026104           92 IDLDPS   97 (243)
Q Consensus        92 vD~~p~   97 (243)
                      +|++|+
T Consensus        81 vd~~P~   86 (86)
T 4b6w_A           81 VDLQPS   86 (86)
T ss_dssp             EECCCC
T ss_pred             EeCCCC
Confidence            999995

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.89  E-value=2.8e-23  Score=158.97  Aligned_cols=90  Identities=71%  Similarity=1.198  Sum_probs=82.2

Q ss_pred             cccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCC
Q 026104            7 QIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG   86 (243)
Q Consensus         7 ~~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg   86 (243)
                      -+..+++|+|+|||+++..+..|++|++++||++||+||+.++||||++|||+|+..+|+.+..|++|+++|++|+|++|
T Consensus         8 ~~~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g   87 (97)
T 2kj6_A            8 HSHGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDG   87 (97)
T ss_dssp             CCCCCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSC
T ss_pred             ccCCCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCC
Confidence            35678899999999988888899999999999999999999999999999999987666666567789999999999999


Q ss_pred             cEEEEeecCC
Q 026104           87 YRLHVIDLDP   96 (243)
Q Consensus        87 ~~IhVvD~~p   96 (243)
                      ++|||+|++|
T Consensus        88 ~~Ihlvd~~p   97 (97)
T 2kj6_A           88 FRLHIIDLDP   97 (97)
T ss_dssp             CEEEEEECCC
T ss_pred             CEEEEEeCCC
Confidence            9999999987

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.84  E-value=1.6e-20  Score=142.43  Aligned_cols=90  Identities=28%  Similarity=0.409  Sum_probs=79.4

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      .+.|+|+|+|++.. +..|+++++++||.+||+||+.++||||++|||++...+|+.+..|++|+++|++|++++|++||
T Consensus         5 ~~~v~l~I~~~~~~-~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~   83 (95)
T 1v6e_A            5 SSGVMVFISSSLNS-FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIH   83 (95)
T ss_dssp             CCCEEEEEEETTSS-SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred             CcEEEEEEEECCCC-eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEE
Confidence            34599999987654 67999999999999999999999999999999999865567655577899999999999999999


Q ss_pred             EeecCCCcccC
Q 026104           91 VIDLDPSSVTS  101 (243)
Q Consensus        91 VvD~~p~s~~~  101 (243)
                      |+|++|.++++
T Consensus        84 v~d~~P~~~~~   94 (95)
T 1v6e_A           84 VIDHSGSGPSS   94 (95)
T ss_dssp             EBCCSCCSSSC
T ss_pred             EEECCcccccC
Confidence            99999988753

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.84  E-value=9.8e-21  Score=144.24  Aligned_cols=86  Identities=24%  Similarity=0.465  Sum_probs=77.8

Q ss_pred             cccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCC
Q 026104            7 QIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG   86 (243)
Q Consensus         7 ~~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg   86 (243)
                      .-.+++.|+|+||+++..++..|+++++++||++||+||+.++||||++|||+|.+ +|+.+..|++|+++|++|+|++|
T Consensus         9 ~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~g   87 (95)
T 2kjr_A            9 SHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDG   87 (95)
T ss_dssp             CCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSS
T ss_pred             ccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCCCCCCHhHCCcCCC
Confidence            34778899999999988778999999999999999999999999999999999975 35655557799999999999999


Q ss_pred             cEEEEee
Q 026104           87 YRLHVID   93 (243)
Q Consensus        87 ~~IhVvD   93 (243)
                      ++|||+|
T Consensus        88 stihlvD   94 (95)
T 2kjr_A           88 LRLHVVD   94 (95)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEC
Confidence            9999999

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.84  E-value=1.6e-20  Score=142.72  Aligned_cols=91  Identities=25%  Similarity=0.268  Sum_probs=79.9

Q ss_pred             ccCCceEEEEEEeC-CCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCC-CCeeeecCCCCCccCCCCCCC
Q 026104            8 IEGDESVLLRVTHS-NLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDT-NTKVAALTDNSRPLGFYSPLQ   85 (243)
Q Consensus         8 ~~~~~~v~v~It~s-~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~-g~~~~~l~~d~~~L~~y~i~d   85 (243)
                      ..++++|+|+|+|+ .+....+|+||++++||++||.||+.+||+||+.|+|+++++. +.....|++|.++|++|++++
T Consensus         4 ~~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~   83 (97)
T 1wjn_A            4 GSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVEN   83 (97)
T ss_dssp             CSSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCT
T ss_pred             cccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCC
Confidence            35678899999985 3566789999999999999999999999999999999999642 334555889999999999999


Q ss_pred             CcEEEEeecCCCc
Q 026104           86 GYRLHVIDLDPSS   98 (243)
Q Consensus        86 g~~IhVvD~~p~s   98 (243)
                      |++|||+|++|+|
T Consensus        84 G~~I~V~d~~p~s   96 (97)
T 1wjn_A           84 GDCLLVRWSGPSS   96 (97)
T ss_dssp             TCEEEEECCSSCC
T ss_pred             CCEEEEEecCCCC
Confidence            9999999999976

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.55  E-value=1.9e-14  Score=108.93  Aligned_cols=80  Identities=18%  Similarity=0.087  Sum_probs=65.9

Q ss_pred             ccccccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104            4 RLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP   83 (243)
Q Consensus         4 ~~~~~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i   83 (243)
                      +......+.+|+|+|+  ++.++...+.+.|+.||++||++|+..+||||++|||++   .|+.    .+|..+|++|+|
T Consensus        12 ~~~~~~~~~mIqI~Vk--~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif---~Gk~----LkD~~TL~dY~I   82 (93)
T 3plu_A           12 SGLVPRGSHMIEVVVN--DRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK---GGSV----LKDHISLEDYEV   82 (93)
T ss_dssp             --------CEEEEEEE--CTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBTGGGTC
T ss_pred             ccccCCCCceEEEEEE--CCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe---CCEE----ccCcCCHHHcCC
Confidence            3444556678999998  456778899999999999999999999999999999999   6876    478999999999


Q ss_pred             CCCcEEEEe
Q 026104           84 LQGYRLHVI   92 (243)
Q Consensus        84 ~dg~~IhVv   92 (243)
                      ++|++||+.
T Consensus        83 ~dgstLhL~   91 (93)
T 3plu_A           83 HDQTNLELY   91 (93)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCEEEEE
Confidence            999999974

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.49  E-value=1.2e-13  Score=98.92  Aligned_cols=74  Identities=15%  Similarity=0.213  Sum_probs=64.9

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      +.++|+|++   .+...++++++++||.+||++|+..+|+|++.|+|++   .|+.   | +|+++|++|++++|++|||
T Consensus         3 M~m~i~vk~---~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g~~i~l   72 (77)
T 2bwf_A            3 MSLNIHIKS---GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKI---L-KDDQTVESYHIQDGHSVHL   72 (77)
T ss_dssp             EEEEEEEEE---TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEE
T ss_pred             eEEEEEEEE---CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE---CCeE---c-CCCCCHHHcCCCCCCEEEE
Confidence            458999986   3457788999999999999999999999999999998   5765   3 6779999999999999999


Q ss_pred             eecC
Q 026104           92 IDLD   95 (243)
Q Consensus        92 vD~~   95 (243)
                      ++..
T Consensus        73 ~~~~   76 (77)
T 2bwf_A           73 VKSQ   76 (77)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9853

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.49  E-value=8.3e-14  Score=104.13  Aligned_cols=79  Identities=20%  Similarity=0.251  Sum_probs=67.5

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCC-----CCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQ-----MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP   83 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~-----~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i   83 (243)
                      ..+..|+|+|+++   +...+++++++     +||.+||++|+..+|+||+.|||++   .|+.   |.+++++|++|++
T Consensus         3 ~~~~~~~v~Vk~~---~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~---~Gk~---L~D~~~~L~~~~i   73 (92)
T 1wxv_A            3 SGSSGLTVTVTHS---NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF---KGKS---LKEMETPLSALGI   73 (92)
T ss_dssp             CCCSSEEEEEECS---SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEE---ECCSSSBHHHHTC
T ss_pred             CCCCeEEEEEEEC---CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE---CCee---cCCCcccHHHCCC
Confidence            3456799999964   34668899995     9999999999999999999999998   5776   4455889999999


Q ss_pred             CCCcEEEEeecCC
Q 026104           84 LQGYRLHVIDLDP   96 (243)
Q Consensus        84 ~dg~~IhVvD~~p   96 (243)
                      ++|++|||+...+
T Consensus        74 ~~g~~i~l~~~~~   86 (92)
T 1wxv_A           74 QDGCRVMLIGKKN   86 (92)
T ss_dssp             CSSEEEEEESCCS
T ss_pred             CCCCEEEEEecCC
Confidence            9999999999765

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.47  E-value=1.6e-13  Score=100.38  Aligned_cols=77  Identities=14%  Similarity=0.134  Sum_probs=65.2

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhH---hCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRK---CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~---tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      +.++|+|++.  .+...++++++++||.+||++|+..   +|+|+++|||++   .|+.   | +|+++|++|++++|++
T Consensus         4 ~~m~i~vk~~--~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~~i~~g~~   74 (85)
T 2wyq_A            4 MAVTITLKTL--QQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKI---L-SDDVPIRDYRIDEKNF   74 (85)
T ss_dssp             CCEEEEEEET--TSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE---TTEE---C-CTTSBGGGGCCCTTSE
T ss_pred             ceEEEEEEEC--CCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE---CCEE---C-cCCCCHHHcCCCCCCE
Confidence            5689999854  3456788999999999999999998   999999999998   6775   3 6789999999999999


Q ss_pred             EEEeecCCC
Q 026104           89 LHVIDLDPS   97 (243)
Q Consensus        89 IhVvD~~p~   97 (243)
                      |||+...|.
T Consensus        75 i~l~~~~~~   83 (85)
T 2wyq_A           75 VVVMVTKTK   83 (85)
T ss_dssp             EEEEEC---
T ss_pred             EEEEEcCCC
Confidence            999998764

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.47  E-value=2.1e-13  Score=98.69  Aligned_cols=72  Identities=18%  Similarity=0.173  Sum_probs=63.7

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      ..++|+|++  +.++...+.+++++||.+||++|+..+|+||+.|||++   .|+.    .+|+.+|++|++++|++||+
T Consensus         3 ~~m~i~Vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~----L~d~~tL~~~~i~~~~~l~l   73 (79)
T 3phx_B            3 EPLSILVRN--NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKP----LEDQLPLGEYGLKPLSTVFM   73 (79)
T ss_dssp             CCEEEEEEC--TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBGGGGTCCTTCEEEE
T ss_pred             CCEEEEEEe--CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE---CCEE----CCCCCcHHHCCCCCCCEEEE
Confidence            458899984  44567788999999999999999999999999999999   6776    36789999999999999999


Q ss_pred             e
Q 026104           92 I   92 (243)
Q Consensus        92 v   92 (243)
                      +
T Consensus        74 ~   74 (79)
T 3phx_B           74 N   74 (79)
T ss_dssp             E
T ss_pred             E
Confidence            7

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.45  E-value=2.9e-13  Score=103.45  Aligned_cols=80  Identities=15%  Similarity=0.216  Sum_probs=66.4

Q ss_pred             CceEEEEEEeC--CCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104           11 DESVLLRVTHS--NLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus        11 ~~~v~v~It~s--~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      ...|+|+|++.  .+..+...+.+++++||.+||++|+..+|||+++|+|++   .|+.   |.++.++|++|+|++|++
T Consensus         5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~gk~---L~D~~~tL~~ygI~~g~~   78 (102)
T 1v5o_A            5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY---MEQL---LTDDHCSLGSYGLKDGDM   78 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE---TTEE---ECCSSSBHHHHTCCTTEE
T ss_pred             CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE---CCEE---CCCCcccHHHCCCCCCCE
Confidence            34588888763  233356778899999999999999999999999999998   5765   445568999999999999


Q ss_pred             EEEeecCC
Q 026104           89 LHVIDLDP   96 (243)
Q Consensus        89 IhVvD~~p   96 (243)
                      |||+....
T Consensus        79 l~l~~~~~   86 (102)
T 1v5o_A           79 VVLLQKDN   86 (102)
T ss_dssp             EEECBCCC
T ss_pred             EEEEECCC
Confidence            99998753

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.44  E-value=1.4e-13  Score=101.84  Aligned_cols=73  Identities=12%  Similarity=0.102  Sum_probs=64.4

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      +-++|+|+.  +.++..++++++++||++||++|+..+|+||++|||++   .|+.   +.+|+++|++|++++|++|||
T Consensus         9 ~~~~i~vk~--l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---lL~D~~tL~~y~I~~gs~i~l   80 (84)
T 2kk8_A            9 SHMKFLVEN--LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV---DGIV---ILREDLTVEQCQIVPTSDIQL   80 (84)
T ss_dssp             CCEEEEEEE--TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---CCCSSSBHHHHTCCTTSCEEE
T ss_pred             CceEEEEEe--cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCEE---ecCCcCCHHHcCCCCCCEEEE
Confidence            458899974  55677889999999999999999999999999999999   5765   247899999999999999998


Q ss_pred             e
Q 026104           92 I   92 (243)
Q Consensus        92 v   92 (243)
                      +
T Consensus        81 v   81 (84)
T 2kk8_A           81 E   81 (84)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.3e-13  Score=105.45  Aligned_cols=78  Identities=15%  Similarity=0.246  Sum_probs=64.3

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      .+.+.|+|+|++   .+...++++++++||.+||++|+..+|+||+.|||++   .|+.    .+|+.+|++|++++|++
T Consensus        24 ~~~m~i~I~Vk~---~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~~gI~~g~t   93 (101)
T 3m63_B           24 QGAMSLNIHIKS---GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKI----LKDDQTVESYHIQDGHS   93 (101)
T ss_dssp             -----CCEEEEC---SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE---TTEE----CCTTSBTTTTTCCTTEE
T ss_pred             cCCcEEEEEEEE---CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE---CCEE----CCCcCcHHHCCCCCCCE
Confidence            345568889985   3446678899999999999999999999999999999   6765    37899999999999999


Q ss_pred             EEEeecCC
Q 026104           89 LHVIDLDP   96 (243)
Q Consensus        89 IhVvD~~p   96 (243)
                      |||+..+|
T Consensus        94 I~lv~~~P  101 (101)
T 3m63_B           94 VHLVKSQP  101 (101)
T ss_dssp             EEECCCC-
T ss_pred             EEEEeCCC
Confidence            99998776

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.44  E-value=5.5e-13  Score=99.41  Aligned_cols=76  Identities=20%  Similarity=0.259  Sum_probs=66.5

Q ss_pred             ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104            8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      ......++|+|+.  +.+....+++++++||.+||++|+..+|+|++.|||++   .|+.    .+|+.+|++|++++|+
T Consensus        12 ~~~~~~m~i~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~----L~D~~tL~~~gi~~g~   82 (91)
T 3v6c_B           12 LVPRGSMQIFVNT--LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKES   82 (91)
T ss_dssp             CCCCCSEEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCTTCBTGGGTCCTTC
T ss_pred             CCCCCeEEEEEEe--CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE---CCeE----CCCcCcHHHCCCCCCC
Confidence            3456679999984  45567788999999999999999999999999999999   6765    3678999999999999


Q ss_pred             EEEEe
Q 026104           88 RLHVI   92 (243)
Q Consensus        88 ~IhVv   92 (243)
                      +|||+
T Consensus        83 ~i~l~   87 (91)
T 3v6c_B           83 TLHLV   87 (91)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.44  E-value=6.2e-13  Score=100.17  Aligned_cols=78  Identities=14%  Similarity=0.162  Sum_probs=66.7

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhH---hCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRK---CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~---tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      ++|+|++.  .+...++++++++||.+||++|+..   +|+|+++|||++   .|+.   | +|+.+|++|++++|++||
T Consensus         1 M~I~Vk~~--~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~ygI~~g~~i~   71 (95)
T 1uel_A            1 MQVTLKTL--QQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY---AGKI---L-NDDTALKEYKIDEKNFVV   71 (95)
T ss_dssp             CEEEEEET--TCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE---TTEE---C-CTTSBGGGGTCCSSSEEE
T ss_pred             CEEEEEeC--CCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE---CCEE---C-CCcCcHHHCCCCCCCEEE
Confidence            46788743  4457789999999999999999999   899999999998   6775   3 678999999999999999


Q ss_pred             EeecCCCccc
Q 026104           91 VIDLDPSSVT  100 (243)
Q Consensus        91 VvD~~p~s~~  100 (243)
                      |+...|.+..
T Consensus        72 l~~~~~~~~~   81 (95)
T 1uel_A           72 VMVTKPKAVS   81 (95)
T ss_dssp             EEESSCCCCC
T ss_pred             EEEeCCCCCC
Confidence            9998876544

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.43  E-value=6.5e-13  Score=97.62  Aligned_cols=76  Identities=20%  Similarity=0.291  Sum_probs=66.1

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      ..+..++|+|++  +.+....+++++++||.+||++|+..+|+||+.|+|++   .|+.    .+|+.+|.+|++++|++
T Consensus         8 ~~~~~m~i~vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~----L~d~~tL~~~~i~~~~~   78 (88)
T 3dbh_I            8 GSGGSMLIKVKT--LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQ----MNDEKTAADYKILGGSV   78 (88)
T ss_dssp             SCCCCEEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEE----CCTTSBGGGGTCCTTCE
T ss_pred             CCCCcEEEEEEc--CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCeE----CCCCCcHHHcCCCCCCE
Confidence            445569999984  34567788999999999999999999999999999999   6775    36799999999999999


Q ss_pred             EEEee
Q 026104           89 LHVID   93 (243)
Q Consensus        89 IhVvD   93 (243)
                      |||+=
T Consensus        79 i~l~~   83 (88)
T 3dbh_I           79 LHLVL   83 (88)
T ss_dssp             EEECC
T ss_pred             EEEEE
Confidence            99973

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.42  E-value=5.5e-13  Score=100.67  Aligned_cols=78  Identities=19%  Similarity=0.171  Sum_probs=67.2

Q ss_pred             ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCC-CccCCCCCCCC
Q 026104            8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNS-RPLGFYSPLQG   86 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~-~~L~~y~i~dg   86 (243)
                      -+++..|+|+|++.  .. ..++++++++||.+||++|+..+|+||++|||++   .|+.   | +|+ ++|++|++++|
T Consensus        10 ~~~~~~~~I~Vk~~--~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~~tL~~ygI~~g   79 (94)
T 2kan_A           10 HAAVRKIHVTVKFP--SK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY---SGIE---L-ADDYRNLNEYGITEF   79 (94)
T ss_dssp             CSSSCCEEEEEECS--SC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE---TTEE---E-CCTTSBHHHHTCCTT
T ss_pred             ccCCCCEEEEEEcC--Cc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE---CCEE---C-CCCcccHHHCCCCCC
Confidence            35667799999854  33 6788999999999999999999999999999998   6776   3 566 99999999999


Q ss_pred             cEEEEeecC
Q 026104           87 YRLHVIDLD   95 (243)
Q Consensus        87 ~~IhVvD~~   95 (243)
                      ++|||+..-
T Consensus        80 stl~lv~r~   88 (94)
T 2kan_A           80 SEIVVFLKS   88 (94)
T ss_dssp             EEEEEEECC
T ss_pred             CEEEEEEeC
Confidence            999999753

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.42  E-value=4.4e-13  Score=98.61  Aligned_cols=77  Identities=14%  Similarity=0.124  Sum_probs=66.5

Q ss_pred             ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104            8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      +.....++|+|++.  .++..++++++++||.+||++|+..+|+||+.|+|++   .|+.    .+|+++|++|++++|+
T Consensus         2 ~~~~~~m~i~Vk~~--~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~Gk~----L~d~~tL~~~~i~~g~   72 (87)
T 1wh3_A            2 SSGSSGIQVFVKNP--DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF---QGQV----LQDWLGLGIYGIQDSD   72 (87)
T ss_dssp             CCCSSSEEEEEEET--TTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE---TTEE----CCSSSBHHHHTCCTTE
T ss_pred             CCCCCCEEEEEEcC--CCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE---CCEE----ccCCCCHHHCCCCCCC
Confidence            34556799999853  3457788999999999999999999999999999998   6765    3688999999999999


Q ss_pred             EEEEee
Q 026104           88 RLHVID   93 (243)
Q Consensus        88 ~IhVvD   93 (243)
                      +|||+=
T Consensus        73 ~i~l~~   78 (87)
T 1wh3_A           73 TLILSK   78 (87)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999975

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.42  E-value=1.8e-13  Score=103.52  Aligned_cols=77  Identities=18%  Similarity=0.217  Sum_probs=66.5

Q ss_pred             ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104            8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      ..+++.|+|+|+++   ....+++++++.||.+||++|+..+||||++|||++   .|+.   | +| .+|++|+|++|+
T Consensus        12 ~~~~~~~~i~Vk~~---g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~---~Gk~---L-dd-~tL~~~~i~~g~   80 (95)
T 1v86_A           12 GVGKELVDLKIIWN---KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY---KGLV---P-ED-KTLREIKVTSGA   80 (95)
T ss_dssp             CCCCCCEEEEEEET---TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS---SSBC---C-SS-SBHHHHCCCTTE
T ss_pred             CCCCceEEEEEEEC---CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCee---C-Cc-CcHHHCCCCCCC
Confidence            45667899999864   357789999999999999999999999999999998   5765   4 44 499999999999


Q ss_pred             EEEEeecC
Q 026104           88 RLHVIDLD   95 (243)
Q Consensus        88 ~IhVvD~~   95 (243)
                      +|||+++.
T Consensus        81 ~i~lv~~~   88 (95)
T 1v86_A           81 KIMVVGST   88 (95)
T ss_dssp             EEEECCSS
T ss_pred             EEEEEecc
Confidence            99999975

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=5.9e-13  Score=96.23  Aligned_cols=76  Identities=18%  Similarity=0.233  Sum_probs=65.2

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      ..+..++|+|++.  .++..++++++++||.+||++|+..+|+|++.|+|++   .|+.   | +|+++|++|++++|++
T Consensus         3 ~~~~~m~i~vk~~--~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g~~   73 (81)
T 2dzi_A            3 SGSSGMQLTVKAL--QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF---KGKA---L-ADGKRLSDYSIGPNSK   73 (81)
T ss_dssp             CSSSSEEEEEEET--TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEE---C-CTTSBGGGGTCCSSBC
T ss_pred             CCCCcEEEEEEeC--CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE---CCeE---C-CCCCcHHHcCCCCCCE
Confidence            3456799999843  3457788999999999999999999999999999998   5775   3 6789999999999999


Q ss_pred             EEEee
Q 026104           89 LHVID   93 (243)
Q Consensus        89 IhVvD   93 (243)
                      |||+=
T Consensus        74 i~l~~   78 (81)
T 2dzi_A           74 LNLVV   78 (81)
T ss_dssp             CEEEC
T ss_pred             EEEEE
Confidence            99873

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.42  E-value=1.1e-12  Score=100.20  Aligned_cols=79  Identities=13%  Similarity=0.186  Sum_probs=67.0

Q ss_pred             ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104            8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      ...+..|+|+|++.   +...++++++++||.+||++|+..+|+||+.|+|++   .|+.   | +|+++|++|++++|+
T Consensus        20 ~~~~~~m~I~Vk~~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~gI~~g~   89 (101)
T 2klc_A           20 QGHPKIMKVTVKTP---KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF---AGKI---L-KDQDTLSQHGIHDGL   89 (101)
T ss_dssp             ---CCCEEEEEECS---SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE---TTEE---E-CTTCCTGGGTCCTTC
T ss_pred             CCCCCeEEEEEEeC---CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCcCcHHHcCCCCCC
Confidence            34556799999854   456788999999999999999999999999999998   5765   3 678999999999999


Q ss_pred             EEEEeecCC
Q 026104           88 RLHVIDLDP   96 (243)
Q Consensus        88 ~IhVvD~~p   96 (243)
                      +|||+...|
T Consensus        90 ~I~l~~~~~   98 (101)
T 2klc_A           90 TVHLVIKTQ   98 (101)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEEcCC
Confidence            999998654

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.41  E-value=4.2e-13  Score=102.94  Aligned_cols=75  Identities=16%  Similarity=0.151  Sum_probs=65.7

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      .+..+|+|+|+  +++++...+.++++.||.+||++|+..+||||++|||++   .|+.    .+|+.+|++|+|++|++
T Consensus        24 ~~~~mm~I~VK--tl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~---~Gk~----L~D~~TL~dygI~~gst   94 (100)
T 1uh6_A           24 GAATMIEVVCN--DRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK---WYTI----FKDHVSLGDYEIHDGMN   94 (100)
T ss_dssp             SCCCEEEEEEE--CSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCSSCBHHHHTCCTTEE
T ss_pred             CCCCeEEEEEE--CCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE---CCEE----CCCCCCHHHcCCCCCCE
Confidence            34557999998  445567788999999999999999999999999999998   6876    37899999999999999


Q ss_pred             EEEe
Q 026104           89 LHVI   92 (243)
Q Consensus        89 IhVv   92 (243)
                      ||++
T Consensus        95 lhL~   98 (100)
T 1uh6_A           95 LELY   98 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9986

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.41  E-value=1e-12  Score=94.72  Aligned_cols=72  Identities=13%  Similarity=0.113  Sum_probs=61.8

Q ss_pred             eEEEEEEeCCCCCce-eEEE-cCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           13 SVLLRVTHSNLKSFS-ADVR-FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        13 ~v~v~It~s~~~~~~-~e~r-~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      .++|+|++.  .++. ..+. ++++.||.+||++|+..+|+||++|+|++   .|+.   | +|+++|++|++++|++||
T Consensus         2 ~m~i~Vk~~--~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~---~g~~---L-~d~~tL~~~~i~~g~~i~   72 (78)
T 2faz_A            2 SMWIQVRTM--DGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY---RGKQ---M-EDGHTLFDYEVRLNDTIQ   72 (78)
T ss_dssp             CEEEEEEET--TSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTTTTTCCTTCEEE
T ss_pred             cEEEEEEEC--CCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEE
Confidence            478899854  3344 3788 99999999999999999999999999998   6765   3 688999999999999999


Q ss_pred             Eee
Q 026104           91 VID   93 (243)
Q Consensus        91 VvD   93 (243)
                      ++=
T Consensus        73 l~~   75 (78)
T 2faz_A           73 LLV   75 (78)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            974

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.41  E-value=1.1e-12  Score=97.28  Aligned_cols=78  Identities=18%  Similarity=0.244  Sum_probs=66.9

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      +..|+|+|++  +.++...+.+++++||.+||++|+..+|+|++.|||++   .|+.    .+|+.+|++|++ +|++||
T Consensus         3 ~~~m~i~Vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~----L~d~~tL~~~~i-~g~~i~   72 (90)
T 4dwf_A            3 PDSLEVLVKT--LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRV----LQDDKKLQEYNV-GGKVIH   72 (90)
T ss_dssp             CCEEEEEEEE--TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBGGGGTC-TTEEEE
T ss_pred             CcEEEEEEEc--CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCeE----CCCCCCHHHcCC-CCcEEE
Confidence            3568999985  34556788899999999999999999999999999999   6876    378999999999 899999


Q ss_pred             EeecCCCc
Q 026104           91 VIDLDPSS   98 (243)
Q Consensus        91 VvD~~p~s   98 (243)
                      ++...|.+
T Consensus        73 l~~~~~~~   80 (90)
T 4dwf_A           73 LVERAPPQ   80 (90)
T ss_dssp             EEECCCC-
T ss_pred             EEecCCCC
Confidence            99976644

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.40  E-value=1.2e-12  Score=100.05  Aligned_cols=81  Identities=14%  Similarity=0.141  Sum_probs=67.5

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHH-HhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC-CCC
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKL-WRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQG   86 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KL-e~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i-~dg   86 (243)
                      .....|+|+|++.....+..++.++++.||.+||++| +..+|+||++|||+|   .|+.+    +|+.+|++|++ ++|
T Consensus        15 ~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~L----~D~~tL~dy~I~~~g   87 (98)
T 4a20_A           15 MDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL---KGKVL----HDNLFLSDLKVTPAN   87 (98)
T ss_dssp             ---CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE---TTEEE----CTTCBGGGSCCBTTB
T ss_pred             CCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEE---CCEEC----cCcCCHHHcCcCCCC
Confidence            4556799999965544446677888999999999999 999999999999999   68763    78899999999 999


Q ss_pred             cEEEEeecCC
Q 026104           87 YRLHVIDLDP   96 (243)
Q Consensus        87 ~~IhVvD~~p   96 (243)
                      .+||++=+.|
T Consensus        88 ~ti~lmvskp   97 (98)
T 4a20_A           88 STITVMIKPN   97 (98)
T ss_dssp             CEEEEEECCC
T ss_pred             CEEEEEEeCC
Confidence            9999987665

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.40  E-value=9.4e-13  Score=97.84  Aligned_cols=71  Identities=20%  Similarity=0.306  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|++  +++....+++++++||.+||++|+..+|+||+.|||++   .|+.    .+|+.+|++|++++|++||++=
T Consensus         1 M~I~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~~~i~~g~~l~l~~   71 (88)
T 4fbj_B            1 MLIKVKT--LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQ----MNDEKTAADYKILGGSVLHLVL   71 (88)
T ss_dssp             CEEEEEE--TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCTTSBTTTTTCCTTCEEEEEC
T ss_pred             CEEEEEc--CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE---CCeE----CCCCCcHHHcCCCCCCEEEEEE
Confidence            4678874  34557788999999999999999999999999999999   6775    3789999999999999999984

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.40  E-value=9.9e-13  Score=97.11  Aligned_cols=72  Identities=17%  Similarity=0.198  Sum_probs=63.0

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      +..++|+|++.  .+...++.+++++||.+||++|+..+|+||++|||++   .|+.    .+|+.+|++|++ +|++||
T Consensus        15 ~~~m~i~Vk~~--~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~~~i-~g~~i~   84 (88)
T 4eew_A           15 PDSLEVLVKTL--DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRV----LQDDKKLQEYNV-GGKVIH   84 (88)
T ss_dssp             CCEEEEEEEET--TSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBGGGGTC-TTEEEE
T ss_pred             CCeEEEEEEcC--CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEE----CCCCCcHHHcCC-CCcEEE
Confidence            45689999853  4456788899999999999999999999999999999   6775    367999999999 899999


Q ss_pred             Ee
Q 026104           91 VI   92 (243)
Q Consensus        91 Vv   92 (243)
                      ++
T Consensus        85 lv   86 (88)
T 4eew_A           85 LV   86 (88)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.39  E-value=7.5e-13  Score=103.24  Aligned_cols=77  Identities=21%  Similarity=0.317  Sum_probs=67.8

Q ss_pred             CCceEEEEEEeCC--------CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCC
Q 026104           10 GDESVLLRVTHSN--------LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFY   81 (243)
Q Consensus        10 ~~~~v~v~It~s~--------~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y   81 (243)
                      .++.|+|.|++++        +.++..++++++++||.+||++|+..+||||+.|+|++   .|+.   | +|+.+|++|
T Consensus        22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~---L-~D~~tL~~y   94 (115)
T 1we7_A           22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY---EGIF---I-KDSNSLAYY   94 (115)
T ss_dssp             CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE---TTEE---E-CTTSBHHHH
T ss_pred             CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE---CCEE---C-CCCCCHHHC
Confidence            4457999999876        35567889999999999999999999999999999999   5765   3 688999999


Q ss_pred             CCCCCcEEEEee
Q 026104           82 SPLQGYRLHVID   93 (243)
Q Consensus        82 ~i~dg~~IhVvD   93 (243)
                      ++++|++|||+=
T Consensus        95 ~i~~g~~i~lv~  106 (115)
T 1we7_A           95 NMASGAVIHLAL  106 (115)
T ss_dssp             TCCSSCEEEEEE
T ss_pred             CCCCCCEEEEEE
Confidence            999999999974

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.39  E-value=4.5e-13  Score=99.49  Aligned_cols=76  Identities=18%  Similarity=0.157  Sum_probs=65.6

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      ++.++|+|++.  .++...+++++++||.+||++|+..+||||++|||++   .|+.    .+|+++|++|++++|++||
T Consensus         2 ~~~m~I~Vk~~--~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~----L~D~~tL~~~~I~~g~~i~   72 (88)
T 2hj8_A            2 DEPLSILVRNN--KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKP----LEDQLPLGEYGLKPLSTVF   72 (88)
T ss_dssp             CCEEEEEEEET--TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES---SSSC----CCTTSBHHHHHCSTTCEEE
T ss_pred             CccEEEEEECC--CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE---CCEE----CCCCCcHHHcCCCCCCEEE
Confidence            44689999854  3457788999999999999999999999999999998   5775    3688999999999999999


Q ss_pred             EeecC
Q 026104           91 VIDLD   95 (243)
Q Consensus        91 VvD~~   95 (243)
                      |+...
T Consensus        73 l~~~~   77 (88)
T 2hj8_A           73 MNLRL   77 (88)
T ss_dssp             EEEC-
T ss_pred             EEEEc
Confidence            99853

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.39  E-value=1.5e-12  Score=92.57  Aligned_cols=71  Identities=20%  Similarity=0.322  Sum_probs=61.6

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|++  +.+...++++++++||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++++|++||++=
T Consensus         1 M~i~vk~--~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~---L-~d~~tL~~~~i~~g~~i~l~~   71 (76)
T 1ndd_A            1 MLIKVKT--LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQ---M-NDEKTAADYKILGGSVLHLVL   71 (76)
T ss_dssp             CEEEEEC--TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEEE
T ss_pred             CEEEEEC--CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEE
Confidence            4678874  34457788999999999999999999999999999998   5765   3 678999999999999999974

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.38  E-value=1.6e-12  Score=99.69  Aligned_cols=81  Identities=12%  Similarity=0.115  Sum_probs=66.9

Q ss_pred             CceEEEEEEeCCCC--CceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104           11 DESVLLRVTHSNLK--SFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus        11 ~~~v~v~It~s~~~--~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      -++..|.|..++-.  .+..++.+++++||.+||++|+..+|+||++|||++   .|+.    ++|+++|.+|+|++|++
T Consensus        13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~---~GKi----L~D~~TL~~y~I~~gst   85 (100)
T 1wju_A           13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVI---NKKQ----LQLGKTLEEQGVAHNVK   85 (100)
T ss_dssp             CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEE---TTEE----CCTTSBHHHHTCCSSEE
T ss_pred             cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEe---CCeE----CCCCCcHHHcCCCCCCE
Confidence            34455555544422  457889999999999999999999999999999998   7887    37889999999999999


Q ss_pred             EEEeecCCCc
Q 026104           89 LHVIDLDPSS   98 (243)
Q Consensus        89 IhVvD~~p~s   98 (243)
                      |||+-+.+.+
T Consensus        86 i~vl~lrg~~   95 (100)
T 1wju_A           86 AMVLELKQSS   95 (100)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEEEECCCC
Confidence            9999876543

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.37  E-value=1.3e-12  Score=100.60  Aligned_cols=76  Identities=12%  Similarity=0.099  Sum_probs=64.4

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      +|+|+|++  +.+....+.+++++||.+||++|+..+|+|+++|||+|   .|+.    .+|+.+|++|+|++|++|||+
T Consensus         1 mm~I~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~~~i~~g~~i~lv   71 (106)
T 3m62_B            1 MVSLTFKN--FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY---SGKV----LQDSKTVSECGLKDGDQVVFM   71 (106)
T ss_dssp             --CEEEEC--TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE---TTEE----CCTTSBTTTTTCCTTCEEEEE
T ss_pred             CEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE---CCEE----CCCcCCHHHcCCCCCCEEEEE
Confidence            36788983  45567888999999999999999999999999999999   6876    367899999999999999999


Q ss_pred             ecCCC
Q 026104           93 DLDPS   97 (243)
Q Consensus        93 D~~p~   97 (243)
                      -..|.
T Consensus        72 ~~~~~   76 (106)
T 3m62_B           72 VSQKK   76 (106)
T ss_dssp             CCC--
T ss_pred             EcCCC
Confidence            87654

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.37  E-value=2.3e-12  Score=93.80  Aligned_cols=73  Identities=18%  Similarity=0.206  Sum_probs=63.5

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      +.++|+|++  +.+....+++++++||.+||++|+..+|+||+.|+|++   .|+.    .+|+.+|++|++++|++|||
T Consensus         2 s~m~i~vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~---~g~~----L~d~~tL~~~~i~~~~~l~l   72 (85)
T 3mtn_B            2 SHMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKWSTLFL   72 (85)
T ss_dssp             -CEEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCTTSBTGGGTCCTTCEEEE
T ss_pred             CeEEEEEEc--CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE---CCEE----CCCCCCHHHcCCCCCCEEEE
Confidence            358899984  34567788999999999999999999999999999998   6765    36789999999999999999


Q ss_pred             ee
Q 026104           92 ID   93 (243)
Q Consensus        92 vD   93 (243)
                      +=
T Consensus        73 ~~   74 (85)
T 3mtn_B           73 LL   74 (85)
T ss_dssp             EC
T ss_pred             EE
Confidence            84

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.37  E-value=1.6e-12  Score=94.77  Aligned_cols=72  Identities=18%  Similarity=0.182  Sum_probs=62.5

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      .++|+|++  +......+++++++||.+||++|+..+|+||+.|+|++   .|+.    .+|+++|++|+++++++|||+
T Consensus         3 ~m~i~vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~---~g~~----L~d~~tL~~~~i~~~~~i~l~   73 (85)
T 3n3k_B            3 HMRIVVKT--LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIHNHSALYLL   73 (85)
T ss_dssp             -CEEEEEC--GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TBEE----CCTTCBTTTTTCCTTCEEEEE
T ss_pred             eEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCeE----CCCCCCHHHCCCCCCCEEEEE
Confidence            47888884  34457789999999999999999999999999999999   5765    367889999999999999998


Q ss_pred             e
Q 026104           93 D   93 (243)
Q Consensus        93 D   93 (243)
                      =
T Consensus        74 ~   74 (85)
T 3n3k_B           74 L   74 (85)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.37  E-value=7.5e-13  Score=99.51  Aligned_cols=78  Identities=17%  Similarity=0.076  Sum_probs=61.7

Q ss_pred             ccccccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104            4 RLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP   83 (243)
Q Consensus         4 ~~~~~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i   83 (243)
                      +..++.....++|+|++    ++...+++++++||.+||++|+..+|+||++|+|++   .|+.   | +|+++|++|++
T Consensus        10 ~~~~~~~~~~m~I~Vk~----g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~y~I   78 (93)
T 2l7r_A           10 HSSGLVPRGSMQLFVRA----QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL---AGAP---L-EDEATLGQCGV   78 (93)
T ss_dssp             ----------CEEEEES----SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE---TTEE---C-CTTSBHHHHTC
T ss_pred             cccCCCCCCcEEEEEEC----CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE---CCEE---C-CCCCcHHHCCC
Confidence            34455666679999985    357788999999999999999999999999999998   5765   3 68899999999


Q ss_pred             CCCcEEEEe
Q 026104           84 LQGYRLHVI   92 (243)
Q Consensus        84 ~dg~~IhVv   92 (243)
                      ++|++|||+
T Consensus        79 ~~gstI~lv   87 (93)
T 2l7r_A           79 EALTTLEVA   87 (93)
T ss_dssp             CSSCEEEEE
T ss_pred             CCCCEEEEE
Confidence            999999997

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.37  E-value=1.1e-12  Score=100.84  Aligned_cols=79  Identities=16%  Similarity=0.115  Sum_probs=67.8

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      +...++|+|++.  .++...+++++++||.+||++|+..+|+|+++|||+|   .|+.   | +|+++|++|++++|++|
T Consensus        20 ~~~~m~I~Vk~~--~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~ygI~~g~ti   90 (106)
T 1ttn_A           20 SGYECQLRLRLS--TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF---SGRP---L-TDKMKFEELKIPKDYVV   90 (106)
T ss_dssp             -CCSEEEEEEET--TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE---TTEE---C-CTTSHHHHCCCSSSCEE
T ss_pred             CCCeEEEEEEcC--CCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE---CCEE---C-CCCCcHHHcCCCCCCEE
Confidence            344689999853  4467788999999999999999999999999999999   6765   3 68899999999999999


Q ss_pred             EEeecCCC
Q 026104           90 HVIDLDPS   97 (243)
Q Consensus        90 hVvD~~p~   97 (243)
                      ||+...|.
T Consensus        91 ~lv~~~~~   98 (106)
T 1ttn_A           91 QVIVSQPV   98 (106)
T ss_dssp             EEECCCSS
T ss_pred             EEEEeCCC
Confidence            99997653

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.37  E-value=1.4e-12  Score=98.77  Aligned_cols=76  Identities=16%  Similarity=0.197  Sum_probs=63.9

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      ..+..++|+|++.  .+....+++++++||.+||++|+..+|+||+.|||++   .|+.    .+|+++|++|+|++|++
T Consensus        18 ~~~~~m~I~Vk~~--~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~~~i~~g~~   88 (98)
T 4hcn_B           18 FQGRPMQIFVKTL--TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKEST   88 (98)
T ss_dssp             ----CCEEEEEET--TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCTTCBSGGGTCCTTEE
T ss_pred             CCCCeEEEEEEeC--CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE---CCEE----CCCCCcHHHCCCCCCCE
Confidence            4555799999854  4456788999999999999999999999999999999   6776    37889999999999999


Q ss_pred             EEEee
Q 026104           89 LHVID   93 (243)
Q Consensus        89 IhVvD   93 (243)
                      |||+=
T Consensus        89 i~l~~   93 (98)
T 4hcn_B           89 LHLVL   93 (98)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99973

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.36  E-value=1.7e-12  Score=95.86  Aligned_cols=76  Identities=12%  Similarity=0.226  Sum_probs=64.7

Q ss_pred             cCCceEEEEEEeCCCCC-ceeEE-EcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCC
Q 026104            9 EGDESVLLRVTHSNLKS-FSADV-RFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG   86 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~-~~~e~-r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg   86 (243)
                      ..+..++|+|++.  .+ ....+ .+++++||.+||++|+..+|+||+.|+|++   .|+.   | +|+++|.+|++++|
T Consensus         3 ~~~~~m~i~Vk~~--~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g   73 (89)
T 1wy8_A            3 SGSSGMWIQVRTI--DGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY---RGKQ---L-ENGYTLFDYDVGLN   73 (89)
T ss_dssp             CCSSCEEEEEEET--TCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE---TTEE---C-CSSSBHHHHTCCTT
T ss_pred             CCCCcEEEEEEEC--CCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCeE---C-CCCCCHHHCCCCCC
Confidence            3456799999854  33 36678 599999999999999999999999999999   5765   3 68899999999999


Q ss_pred             cEEEEee
Q 026104           87 YRLHVID   93 (243)
Q Consensus        87 ~~IhVvD   93 (243)
                      ++|||+=
T Consensus        74 ~~i~l~~   80 (89)
T 1wy8_A           74 DIIQLLV   80 (89)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEE
Confidence            9999985

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.36  E-value=1.7e-12  Score=97.54  Aligned_cols=76  Identities=14%  Similarity=0.154  Sum_probs=66.7

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      .+..|+|+|++.   ....++++++++||.+||++|+..+|+|++.|||+|   .|+.   | +|+++|.+|++++|++|
T Consensus        14 ~~~~m~i~Vk~~---g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i   83 (96)
T 1wx8_A           14 SSRIIRVSVKTP---QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF---TGKI---L-RDQDILSQRGILDGSTV   83 (96)
T ss_dssp             CSCEEEEEEECS---SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE---TTEE---C-CTTSCHHHHTCCTTEEE
T ss_pred             CCCcEEEEEEEC---CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEE---C-CCcCCHHHCCCCCCCEE
Confidence            446799999864   457789999999999999999999999999999999   5765   3 68899999999999999


Q ss_pred             EEeecC
Q 026104           90 HVIDLD   95 (243)
Q Consensus        90 hVvD~~   95 (243)
                      ||+...
T Consensus        84 ~l~~~~   89 (96)
T 1wx8_A           84 HVVVRS   89 (96)
T ss_dssp             ECCBCC
T ss_pred             EEEEeC
Confidence            998754

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.35  E-value=3e-12  Score=91.03  Aligned_cols=71  Identities=20%  Similarity=0.253  Sum_probs=61.2

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|++.  .+...++++++++||.+||++|+..+|+|++.|+|.+   .|+.   | +|+++|++|++.+|++||++=
T Consensus         1 M~i~vk~~--~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~---L-~d~~tL~~~~i~~g~~i~l~~   71 (76)
T 3a9j_A            1 MQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQRESTLHLVL   71 (76)
T ss_dssp             CEEEEEET--TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTGGGTCCTTCEEEEEE
T ss_pred             CEEEEEcC--CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEEE
Confidence            46788753  3456788999999999999999999999999999999   5765   3 678999999999999999974

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.35  E-value=5e-12  Score=98.10  Aligned_cols=73  Identities=19%  Similarity=0.242  Sum_probs=64.2

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      ..++|+|++  +.++...+++++++||.+||++|+..+|+||+.|||++   .|+.    .+|+++|++|++++|++||+
T Consensus        34 ~~m~I~Vk~--~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~~gI~~gs~I~l  104 (111)
T 3vdz_A           34 LAMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHL  104 (111)
T ss_dssp             GCEEEEEEC--SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBTTTTTCCTTCEEEE
T ss_pred             ccEEEEEEe--CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE---CCEE----CCCCCcHHHCCCCCCCEEEE
Confidence            468999984  45567788999999999999999999999999999999   6765    36889999999999999999


Q ss_pred             ee
Q 026104           92 ID   93 (243)
Q Consensus        92 vD   93 (243)
                      +=
T Consensus       105 ~~  106 (111)
T 3vdz_A          105 VL  106 (111)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.35  E-value=2.2e-12  Score=96.58  Aligned_cols=77  Identities=17%  Similarity=0.050  Sum_probs=64.9

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHh--CCCCCceEEEEEcCCCCeeeecCCCCCccCCC--CCCCC
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKC--GTSVNSMSLELYDDTNTKVAALTDNSRPLGFY--SPLQG   86 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~t--Gipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y--~i~dg   86 (243)
                      .+.|+|+|++.+-.....++.+++++||.+||++|+..+  |+||++|||++   .|+.    .+|+.+|++|  +++++
T Consensus         5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~---~Gk~----L~D~~tL~~~~~~i~~~   77 (93)
T 1wgd_A            5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY---SGKL----LLDHQCLRDLLPKQEKR   77 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE---TTEE----CCSSSCHHHHSCSSSCS
T ss_pred             CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE---CCEE----CcCcCCHHHHhcCCCCC
Confidence            456899998654433357777889999999999999999  99999999999   6876    3678999999  99999


Q ss_pred             cEEEEeec
Q 026104           87 YRLHVIDL   94 (243)
Q Consensus        87 ~~IhVvD~   94 (243)
                      ++||++-.
T Consensus        78 ~~i~lv~~   85 (93)
T 1wgd_A           78 HVLHLVCN   85 (93)
T ss_dssp             EEEEEECC
T ss_pred             CEEEEEeC
Confidence            99999863

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.35  E-value=3.6e-12  Score=98.69  Aligned_cols=76  Identities=17%  Similarity=0.131  Sum_probs=65.0

Q ss_pred             CceEEEEEEeCCC-CCceeEEEcCC-CCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104           11 DESVLLRVTHSNL-KSFSADVRFPL-QMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus        11 ~~~v~v~It~s~~-~~~~~e~r~~~-~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      ...|+|+|++.+. .++..++++++ ++||.+||++|+..+||||++|+|++   .|+.    .+|+.+|++|+|++|++
T Consensus        25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~----L~D~~tL~~y~I~~g~~   97 (111)
T 1we6_A           25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG---KAGF----LKDNMSLAHYNVGAGEI   97 (111)
T ss_dssp             CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC---SSSB----CCTTSBTTTTTCSSSCE
T ss_pred             CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEE----CCCCCcHHHCCCCCCCE
Confidence            3569999985421 44577899998 99999999999999999999999998   5764    47889999999999999


Q ss_pred             EEEee
Q 026104           89 LHVID   93 (243)
Q Consensus        89 IhVvD   93 (243)
                      |||+=
T Consensus        98 l~l~~  102 (111)
T 1we6_A           98 LTLSL  102 (111)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99974

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.34  E-value=7.3e-12  Score=99.40  Aligned_cols=75  Identities=13%  Similarity=0.193  Sum_probs=66.0

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      +..|+|+|++.   ....++++++++||.+||++|+..+|||+++|||+|   .|+.   | +|+++|++|+|++|++||
T Consensus        30 ~~~m~I~Vk~~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~dygI~~gstI~   99 (125)
T 1j8c_A           30 PKIIKVTVKTP---KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF---AGKI---L-KDQDTLIQHGIHDGLTVH   99 (125)
T ss_dssp             CCCEEEEEECS---SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE---TTEE---E-STTSCGGGTTCSSSEEEE
T ss_pred             CCcEEEEEEeC---CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE---CCEE---c-CCCCCHHHcCCCCCCEEE
Confidence            45799999854   457789999999999999999999999999999999   5775   3 678999999999999999


Q ss_pred             EeecC
Q 026104           91 VIDLD   95 (243)
Q Consensus        91 VvD~~   95 (243)
                      |+...
T Consensus       100 lv~~~  104 (125)
T 1j8c_A          100 LVIKR  104 (125)
T ss_dssp             EEEC-
T ss_pred             EEecc
Confidence            99864

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.34  E-value=6e-12  Score=93.11  Aligned_cols=74  Identities=15%  Similarity=0.113  Sum_probs=62.8

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      -+.+.+.++.   .+...++++++++||.+||++|+..+|+||+.|||++   .|+.   | +|+++|++|++++|++|+
T Consensus        10 ~~~~~~~~~~---~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~l~   79 (85)
T 2kd0_A           10 HSTIKLTVKF---GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF---KGKV---L-VETSTLKQSDVGSGAKLM   79 (85)
T ss_dssp             CCCEEEEEEE---TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE---TTEE---C-CTTCBTTTTTCCTTEEEE
T ss_pred             CCcEEEEEEE---CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCeE---C-CCcCCHHHCCCCCCCEEE
Confidence            3456666663   3456788999999999999999999999999999998   5765   3 788999999999999999


Q ss_pred             Eeec
Q 026104           91 VIDL   94 (243)
Q Consensus        91 VvD~   94 (243)
                      |+.+
T Consensus        80 l~~s   83 (85)
T 2kd0_A           80 LMAS   83 (85)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            9874

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.34  E-value=1.8e-12  Score=100.01  Aligned_cols=78  Identities=12%  Similarity=0.171  Sum_probs=63.2

Q ss_pred             eEEEEEEeCCCCCceeEEEcC-CCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCC-----------eeeecCCCCCccCC
Q 026104           13 SVLLRVTHSNLKSFSADVRFP-LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT-----------KVAALTDNSRPLGF   80 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~-~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~-----------~~~~l~~d~~~L~~   80 (243)
                      .|.|+|++.+  +.. .+.++ +++||.+||+||+.++||||++|+|++.   ++           .+..+.+|+++|++
T Consensus         7 ~M~irvrs~~--G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~---~~~~~~k~~~~~~~l~~~l~d~~tL~~   80 (107)
T 1wf9_A            7 GTMLRVRSRD--GLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN---RNLLLAKSPSDFLAFTDMADPNLRISS   80 (107)
T ss_dssp             CEEEEEECSS--CEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS---GGGGTCCSHHHHTTCCSSCCTTCBGGG
T ss_pred             eEEEEEECCC--CCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC---CccccccCccccccccccCCCCCCHHH
Confidence            3779998443  333 46688 9999999999999999999999999984   44           22223689999999


Q ss_pred             CCCCCCcEEEEeecCC
Q 026104           81 YSPLQGYRLHVIDLDP   96 (243)
Q Consensus        81 y~i~dg~~IhVvD~~p   96 (243)
                      ||+++|++|||++...
T Consensus        81 ~gi~~G~~L~l~~~~~   96 (107)
T 1wf9_A           81 LNLAHGSMVYLAYEGE   96 (107)
T ss_dssp             TCCCTTCEEECCCSSC
T ss_pred             CCCCCCCEEEEEeCCC
Confidence            9999999999999753

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.34  E-value=6.4e-12  Score=103.90  Aligned_cols=111  Identities=16%  Similarity=0.176  Sum_probs=83.5

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      .+...|+|+|++  +.++...+++++++||.+||++|+..+|+|+++|+|.+   .|+.    .+|+.+|++|++++|++
T Consensus        16 ~~~~~m~i~Vk~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~---~g~~----L~d~~tL~~~~i~~~~~   86 (172)
T 3u30_A           16 PRGSHMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKEST   86 (172)
T ss_dssp             ---CCEEEEEEE--TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTCBTGGGTCCTTCE
T ss_pred             CCCCcEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCcc----ccccCCHhHcCCcccce
Confidence            445569999984  45567789999999999999999999999999999998   5765    37899999999999999


Q ss_pred             EEEeecCCCcccCCCcccc-CCcceeeecCHHHHhcchhhHHHHHHHhh
Q 026104           89 LHVIDLDPSSVTSGGWLED-TSLVEKYTISEEEYSKRDGTFRKFKEKVL  136 (243)
Q Consensus        89 IhVvD~~p~s~~~~~~l~d-~s~veky~msee~Y~~r~dtvr~~kk~~~  136 (243)
                      ||++-.-+..+.-.  +.. ..+.-.++++      ..+||...|++..
T Consensus        87 l~l~~~~~gg~~i~--Vk~~~g~~~~l~v~------~~~tV~~lK~~I~  127 (172)
T 3u30_A           87 LHLVLRLRGGMQIF--VKTLTGKTITLEVE------PSDTIENVKAKIQ  127 (172)
T ss_dssp             EEEEECCCCCEEEE--EEESSCCEEEEEEC------TTCBHHHHHHHHH
T ss_pred             eeeeecccccccce--eecccCcceeEEec------CCCCHHHHHHHHH
Confidence            99997654332211  111 1232344554      4899999999853

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.33  E-value=4e-12  Score=98.27  Aligned_cols=77  Identities=16%  Similarity=0.142  Sum_probs=62.7

Q ss_pred             ceEEEEEEeCCCC--CceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC-CCCcE
Q 026104           12 ESVLLRVTHSNLK--SFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQGYR   88 (243)
Q Consensus        12 ~~v~v~It~s~~~--~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i-~dg~~   88 (243)
                      +-|++.|+-.++.  .....+.+.|++||++||++|+..+||||+.|||++   +|+    +.+|+++|.+||| ++|++
T Consensus        21 ~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~---ggk----ll~D~~TL~~ygI~~~G~t   93 (105)
T 4dbg_A           21 QDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVI---GQR----LARDQETLHSHGVRQNGDS   93 (105)
T ss_dssp             CCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTE----EECTTCBTGGGTCCSTTCE
T ss_pred             CcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEec---cCe----EccCcCcHHHcCCCCCCCE
Confidence            3455555444554  367889999999999999999999999999999887   454    3588999999999 59999


Q ss_pred             EEEeecC
Q 026104           89 LHVIDLD   95 (243)
Q Consensus        89 IhVvD~~   95 (243)
                      ||++=..
T Consensus        94 ~hL~l~~  100 (105)
T 4dbg_A           94 AYLYLLS  100 (105)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEe
Confidence            9997654

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.33  E-value=6.1e-12  Score=94.41  Aligned_cols=79  Identities=18%  Similarity=0.199  Sum_probs=66.1

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      .+..|+|+|++  +.++..++++++++||.+||++|+..+   +++|||+|   .|+.   |.+++++|++|++++|++|
T Consensus         4 ~~~~m~i~Vk~--~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~---~Gk~---L~D~~~tL~~y~i~~g~~i   72 (95)
T 1wia_A            4 GSSGINVRLKF--LNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIY---QGRL---LQDPARTLSSLNITNNCVI   72 (95)
T ss_dssp             CCCSEEEEEEE--TTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEE---TTEE---CCCSSCBTTTTTCCTTEEE
T ss_pred             CCCeEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEE---CCEE---ccCCcCCHHHcCCCCCCEE
Confidence            45569999984  345577899999999999999999998   99999998   6775   4344499999999999999


Q ss_pred             EEeecCCCcc
Q 026104           90 HVIDLDPSSV   99 (243)
Q Consensus        90 hVvD~~p~s~   99 (243)
                      ||+...|.+.
T Consensus        73 ~l~~~~~~~~   82 (95)
T 1wia_A           73 HCHRSPPGAA   82 (95)
T ss_dssp             EEECCCCCCC
T ss_pred             EEEECCCCCC
Confidence            9999877554

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.33  E-value=1.3e-12  Score=97.76  Aligned_cols=75  Identities=15%  Similarity=0.133  Sum_probs=62.9

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHH-HhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC-CCCcEEE
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKL-WRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQGYRLH   90 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KL-e~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i-~dg~~Ih   90 (243)
                      +++|+|++.....+..+..++++.||.+||++| +..+|+||++|||+|   .|+.    .+|+.+|++|++ ++|++||
T Consensus         1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~y~I~~~~stl~   73 (87)
T 2lxa_A            1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL---KGKV----LHDNLFLSDLKVTPANSTIT   73 (87)
T ss_dssp             CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEE---TTEE----CCTTCBHHHHCCCGGGCEEE
T ss_pred             CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEE---CCEE----CcCcCCHHHcCCCCCCCEEE
Confidence            378999855443345555577999999999999 999999999999999   7876    378999999999 7999999


Q ss_pred             Eeec
Q 026104           91 VIDL   94 (243)
Q Consensus        91 VvD~   94 (243)
                      |.=+
T Consensus        74 v~~~   77 (87)
T 2lxa_A           74 VMIK   77 (87)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            9864

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.32  E-value=4.1e-12  Score=94.32  Aligned_cols=71  Identities=21%  Similarity=0.287  Sum_probs=62.0

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|+.  +.++..++++++++||++||++|+..+|+||+.|||++   .|+.   | +|+++|++|++++|++||++=
T Consensus        10 ~~i~v~~--~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~   80 (88)
T 1sif_A           10 LQLFIKT--LTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL   80 (88)
T ss_dssp             CEEEEEE--TTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTSBSGGGTCCTTCEEEEEC
T ss_pred             eEEEEEe--CCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEE
Confidence            6777763  45567889999999999999999999999999999998   5775   3 678999999999999999974

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.32  E-value=4.2e-12  Score=95.07  Aligned_cols=71  Identities=18%  Similarity=0.228  Sum_probs=62.3

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|++.  .+...++++++++||.+||++|+..+|+|++.|+|++   .|+.    .+|+.+|++|++++|++|||+=
T Consensus         2 m~i~vk~~--~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~---~G~~----L~d~~tL~~~~i~~~~~i~l~~   72 (96)
T 3k9o_B            2 MQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL   72 (96)
T ss_dssp             CEEEEEET--TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBTGGGTCCTTCEEEEEE
T ss_pred             cEEEEEeC--CCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE---CCEE----CCCCCcHHHcCCCCCCEEEEEE
Confidence            57888754  4457788999999999999999999999999999998   6765    3688899999999999999985

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.32  E-value=1.3e-11  Score=95.50  Aligned_cols=75  Identities=20%  Similarity=0.238  Sum_probs=65.0

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      ....++|+|++  +.++..++++++++||.+||++|+..+|+|++.|+|++   .|+.   | +|+++|++|++++|++|
T Consensus        32 ~~~~m~I~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~gI~~gs~I  102 (111)
T 2ojr_A           32 ELLAMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTL  102 (111)
T ss_dssp             GSSCEEEEEEC--SSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEE---C-CSSCBTTTTTCCTTCEE
T ss_pred             CCCeEEEEEEc--CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE---CCEE---C-CCCCcHHHcCCCCCCEE
Confidence            34579999984  34457788999999999999999999999999999998   5765   3 67899999999999999


Q ss_pred             EEee
Q 026104           90 HVID   93 (243)
Q Consensus        90 hVvD   93 (243)
                      ||+=
T Consensus       103 ~l~~  106 (111)
T 2ojr_A          103 HLVL  106 (111)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9974

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.32  E-value=4.8e-12  Score=96.49  Aligned_cols=78  Identities=9%  Similarity=0.150  Sum_probs=66.9

Q ss_pred             ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104            8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      ...+..|+|+|++.+  ++ .++++++++||.+||++|+..+|+||+.|||++   .|+.    .+|+++|++|++++|+
T Consensus        17 ~~~~~~m~I~Vk~~~--g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~ygI~~gs   86 (100)
T 1yqb_A           17 RGSPHLIKVTVKTPK--DK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKI----LKDPDSLAQCGVRDGL   86 (100)
T ss_dssp             SCCTTEEEEEEECSS--CE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBHHHHTCCTTC
T ss_pred             CCCCCeEEEEEEcCC--Cc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEE----CCCcCcHHHCCCCCCC
Confidence            445667999998543  33 588999999999999999999999999999998   5765    3688999999999999


Q ss_pred             EEEEeecC
Q 026104           88 RLHVIDLD   95 (243)
Q Consensus        88 ~IhVvD~~   95 (243)
                      +|||+...
T Consensus        87 tI~l~~r~   94 (100)
T 1yqb_A           87 TVHLVIKR   94 (100)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEcC
Confidence            99999754

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.31  E-value=1.1e-11  Score=99.21  Aligned_cols=105  Identities=16%  Similarity=0.181  Sum_probs=79.5

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|++.  .+...++++++++||.+||++|+..+|+||+.|+|.+   .|+.   | +|+.+|++|++.+|++|||+.
T Consensus         1 M~i~vk~~--~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~---~g~~---L-~d~~tL~~~~i~~~~~l~l~~   71 (152)
T 3b08_A            1 MQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL   71 (152)
T ss_dssp             CEEEEEET--TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEE
T ss_pred             CEEEEEeC--CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE---CCeE---C-cCcccHHHhccCCCCeeEEEe
Confidence            36778743  3457789999999999999999999999999999999   5765   3 688999999999999999999


Q ss_pred             cCCCcccCCCccccC-CcceeeecCHHHHhcchhhHHHHHHHh
Q 026104           94 LDPSSVTSGGWLEDT-SLVEKYTISEEEYSKRDGTFRKFKEKV  135 (243)
Q Consensus        94 ~~p~s~~~~~~l~d~-s~veky~msee~Y~~r~dtvr~~kk~~  135 (243)
                      ..+..+.-.  +... .+.-.++++      ..+||...|++.
T Consensus        72 ~~~~~~~i~--Vk~~~g~~~~~~v~------~~~tv~~lK~~i  106 (152)
T 3b08_A           72 RLRGGMQIF--VKTLTGKTITLEVE------PSDTIENVKAKI  106 (152)
T ss_dssp             CCTTCEEEE--EEESSSCEEEEEEC------TTCBHHHHHHHH
T ss_pred             eccccccee--eeecCCCEEEEEeC------CCCcHHHHHHHH
Confidence            766432111  1111 122234443      489999999875

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.30  E-value=4e-12  Score=97.18  Aligned_cols=77  Identities=14%  Similarity=0.075  Sum_probs=61.2

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhH-hCCCC-CceEEEEEcCCCCeeeecCCCCCccCCC--CCC
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRK-CGTSV-NSMSLELYDDTNTKVAALTDNSRPLGFY--SPL   84 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~-tGipp-~~qrL~l~~~~g~~~~~l~~d~~~L~~y--~i~   84 (243)
                      ...+.|+|+|+..+.......+.+++++||.+||++|+.. +|+|| ++|||+|   .|+.+    +|+++|++|  +++
T Consensus        19 ~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy---~Gk~L----~D~~tL~~y~~~I~   91 (99)
T 2kdb_A           19 FQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY---SGRLL----PDHLQLKDILRKQD   91 (99)
T ss_dssp             ----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE---TTEEE----CTTSBTHHHHTTTC
T ss_pred             CCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE---CCEEC----CCCCCHHHHhcCCC
Confidence            3445699999854443224577789999999999999985 67775 9999999   78873    688999999  999


Q ss_pred             CCcEEEEe
Q 026104           85 QGYRLHVI   92 (243)
Q Consensus        85 dg~~IhVv   92 (243)
                      +|++||++
T Consensus        92 ~~~tihLv   99 (99)
T 2kdb_A           92 EYHMVHLV   99 (99)
T ss_dssp             SEEEEEEC
T ss_pred             CCCEEEeC
Confidence            99999986

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.29  E-value=8.3e-12  Score=95.76  Aligned_cols=75  Identities=11%  Similarity=0.192  Sum_probs=65.0

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      +..|+|+|++..  .+ .++++++++||.+||++|+..+|+|++.|||+|   .|+.   | +|+++|.+|+|++|++||
T Consensus        15 ~~~m~I~Vk~~~--g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~gi~~g~~i~   84 (106)
T 1wx7_A           15 PHLIKVTVKTPK--DK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKI---L-KDPDSLAQCGVRDGLTVH   84 (106)
T ss_dssp             SSEEEEEEECSS--CE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE---TTEE---C-CTTSCHHHHTCCTTEEEE
T ss_pred             CceEEEEEEeCC--Cc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCcCcHHHcCCCCCCEEE
Confidence            567999998643  33 588999999999999999999999999999998   5765   3 688999999999999999


Q ss_pred             EeecC
Q 026104           91 VIDLD   95 (243)
Q Consensus        91 VvD~~   95 (243)
                      |+...
T Consensus        85 l~~~~   89 (106)
T 1wx7_A           85 LVIKR   89 (106)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            99753

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.28  E-value=7.5e-12  Score=90.44  Aligned_cols=72  Identities=11%  Similarity=0.186  Sum_probs=63.3

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      .|+|+|++  +.++...+++.++.||.+||++++..+|+||++|||+|   +|+.   | +|+.+|++|++++|++||++
T Consensus         3 ~m~i~vk~--~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~---~G~~---L-~d~~tl~~~~i~~~~~i~l~   73 (79)
T 2uyz_B            3 YIKLKVIG--QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQR---I-ADNHTPKELGMEEEDVIEVY   73 (79)
T ss_dssp             EEEEEEEC--TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTCCHHHHTCCTTEEEEEE
T ss_pred             eEEEEEEC--CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE---CCEE---e-CCCCCHHHcCCCCCCEEEEE
Confidence            48899984  44556778899999999999999999999999999999   7876   3 68899999999999999997


Q ss_pred             e
Q 026104           93 D   93 (243)
Q Consensus        93 D   93 (243)
                      =
T Consensus        74 ~   74 (79)
T 2uyz_B           74 Q   74 (79)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.28  E-value=8.9e-12  Score=94.40  Aligned_cols=76  Identities=12%  Similarity=0.125  Sum_probs=64.9

Q ss_pred             cCCceEEEEEEeCCCCCcee-EEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104            9 EGDESVLLRVTHSNLKSFSA-DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~-e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      .++..|+|+|++.   +... ++.++++.||.+||++|+..+||||++|||++   .|+.   | +|+ +|.+|+|++|.
T Consensus         3 ~~~~~m~i~Vk~~---g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~---~Gk~---L-~D~-tL~~~~I~~g~   71 (96)
T 1wgg_A            3 SGSSGYSVTVKWG---KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV---KGGT---L-KDD-DWGNIKMKNGM   71 (96)
T ss_dssp             SCCCEEEEEEEET---TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE---TTEE---C-CSS-CCCSCCCCSSC
T ss_pred             CCCcEEEEEEEEC---CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCcC---C-CCC-CHHHCCCCCCC
Confidence            3456799999864   3466 68899999999999999999999999999998   6776   3 456 99999999999


Q ss_pred             EEEEeecC
Q 026104           88 RLHVIDLD   95 (243)
Q Consensus        88 ~IhVvD~~   95 (243)
                      +||++-+.
T Consensus        72 ~i~l~~~~   79 (96)
T 1wgg_A           72 TVLMMGSA   79 (96)
T ss_dssp             EEECCCCC
T ss_pred             EEEEEecc
Confidence            99998754

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.28  E-value=1.3e-11  Score=93.14  Aligned_cols=74  Identities=19%  Similarity=0.211  Sum_probs=63.4

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|+..  .+...+++++++.||.+||++|+..+|+||+.|+|++   .|+.   | +|+++|++|++++|++|||+.
T Consensus         1 M~I~Vk~~--~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~   71 (98)
T 1yx5_B            1 MQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL   71 (98)
T ss_dssp             CEEEEEET--TSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEE
T ss_pred             CEEEEEeC--CCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence            46788743  3456788999999999999999999999999999998   6765   3 678999999999999999988


Q ss_pred             cCC
Q 026104           94 LDP   96 (243)
Q Consensus        94 ~~p   96 (243)
                      ..+
T Consensus        72 ~~~   74 (98)
T 1yx5_B           72 RLR   74 (98)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            654

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.28  E-value=9.6e-12  Score=95.79  Aligned_cols=82  Identities=18%  Similarity=0.166  Sum_probs=66.8

Q ss_pred             ccCCceEEEEEEeCCC-CCceeEEEcCC---------CCCHHHHHHHHHhHh--CCCCCc-eEEEEEcCCCCeeeecCCC
Q 026104            8 IEGDESVLLRVTHSNL-KSFSADVRFPL---------QMSVESVKDKLWRKC--GTSVNS-MSLELYDDTNTKVAALTDN   74 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~-~~~~~e~r~~~---------~~TV~~LK~KLe~~t--Gipp~~-qrL~l~~~~g~~~~~l~~d   74 (243)
                      .++.+.|+|+|++.+. .....++.|++         ++||.+||++|+..+  |+|+++ |||+|   .|+.   | +|
T Consensus         7 ~~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~---~Gk~---L-~D   79 (107)
T 1x1m_A            7 GMSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY---CGRK---L-KD   79 (107)
T ss_dssp             CCCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE---TTEE---C-CT
T ss_pred             CccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE---CCeE---C-CC
Confidence            3555668999997654 11355677555         599999999999999  999999 99998   6876   3 68


Q ss_pred             CCccCCCCCCCCcEEEEeecCC
Q 026104           75 SRPLGFYSPLQGYRLHVIDLDP   96 (243)
Q Consensus        75 ~~~L~~y~i~dg~~IhVvD~~p   96 (243)
                      +++|.+|++++|++||++...+
T Consensus        80 ~~tL~~y~i~~g~~i~lv~~~~  101 (107)
T 1x1m_A           80 DQTLDFYGIQPGSTVHVLRKSW  101 (107)
T ss_dssp             TCBHHHHTCCTTCEEEEEESSC
T ss_pred             CCcHHHcCCCCCCEEEEEeCCC
Confidence            8999999999999999998754

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.27  E-value=2.6e-11  Score=98.68  Aligned_cols=108  Identities=18%  Similarity=0.176  Sum_probs=81.7

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|++  ++++...++++++.||.+||++|+..+|+||++|||+++. .|+.   | +|+.+|++|++++|++||++-
T Consensus         3 m~i~vk~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~-~g~~---L-~d~~tL~~y~i~~~~~l~l~~   75 (159)
T 3rt3_B            3 WDLTVKM--LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP-SGVA---L-QDRVPLASQGLGPGSTVLLVV   75 (159)
T ss_dssp             CEEEEEE--TTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEET-TCCB---C-CTTSCGGGGTCCTTCEEEEEE
T ss_pred             eEEEEEE--CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcC-CCCC---C-CCCCCHHHcCCCCCCEEEEEc
Confidence            6788874  4456778999999999999999999999999999999542 2655   3 899999999999999999998


Q ss_pred             cC-CCcccCCCccccC-CcceeeecCHHHHhcchhhHHHHHHHhh
Q 026104           94 LD-PSSVTSGGWLEDT-SLVEKYTISEEEYSKRDGTFRKFKEKVL  136 (243)
Q Consensus        94 ~~-p~s~~~~~~l~d~-s~veky~msee~Y~~r~dtvr~~kk~~~  136 (243)
                      .. |..+.-.  .... .+.-.++++.      .+||...|++..
T Consensus        76 ~~~~~~m~i~--vk~~~g~~~~~~v~~------~~tV~~lK~~i~  112 (159)
T 3rt3_B           76 DKSDEPLSIL--VRNNKGRSSTYEVRL------TQTVAHLKQQVS  112 (159)
T ss_dssp             CCCCCCEEEE--EECTTSCEEEEEECT------TSBHHHHHHHHH
T ss_pred             cCCCCcEEEE--EECCCCCEEEEEeCC------CCCHHHHHHHHH
Confidence            74 4332111  1121 2333456654      899999998753

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.27  E-value=1e-11  Score=93.92  Aligned_cols=75  Identities=12%  Similarity=0.192  Sum_probs=65.1

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      ....|+|+|++  +.++...+++.++.||.+||++|+..+|||+++|||+|   +|+.   | .|+.+|++|++++|++|
T Consensus        18 ~~~~m~I~Vk~--~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif---~Gk~---L-~d~~tl~dy~i~~g~~I   88 (97)
T 1wyw_B           18 EGEYIKLKVIG--QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQR---I-ADNHTPKELGMEEEDVI   88 (97)
T ss_dssp             -CCEEEEEEEC--TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTCCHHHHTCCTTCEE
T ss_pred             CCCcEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE---CCeE---c-CCCCCHHHCCCCCCCEE
Confidence            44569999984  45567778899999999999999999999999999999   7876   3 68899999999999999


Q ss_pred             EEee
Q 026104           90 HVID   93 (243)
Q Consensus        90 hVvD   93 (243)
                      ||+=
T Consensus        89 ~l~~   92 (97)
T 1wyw_B           89 EVYQ   92 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9974

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.26  E-value=2.3e-11  Score=95.70  Aligned_cols=60  Identities=10%  Similarity=-0.070  Sum_probs=55.3

Q ss_pred             eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCC-------CcEEEEee
Q 026104           27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQ-------GYRLHVID   93 (243)
Q Consensus        27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~d-------g~~IhVvD   93 (243)
                      .+.+.+.++.||.+||+||+.++||||++|||++   +|+.    ++|+++|++|||++       +++||++=
T Consensus        13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~---~Gk~----LeD~kTL~dy~I~~~ta~~q~~atl~Lvl   79 (118)
T 4ajy_B           13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYK---DDQL----LDDGKTLGECGFTSQTARPQAPATVGLAF   79 (118)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred             EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEe---CCeE----CCCcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence            6777889999999999999999999999999998   6765    48999999999999       99999984

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.26  E-value=5.1e-12  Score=97.71  Aligned_cols=75  Identities=17%  Similarity=0.167  Sum_probs=65.3

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCC---------------CceEEEEEcCCCCeeeecCCCCC
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSV---------------NSMSLELYDDTNTKVAALTDNSR   76 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp---------------~~qrL~l~~~~g~~~~~l~~d~~   76 (243)
                      ..++|+|+  .+++...++.++++.||.+||++|+..+|+||               ++|+|++   .|+.   |.+|++
T Consensus         6 ~~M~I~Vk--~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~---~Gk~---L~dD~~   77 (105)
T 1v2y_A            6 SGMTVRVC--KMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS---AGEK---LTEDRK   77 (105)
T ss_dssp             CSEEEEEE--CSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES---SSCE---ECCSSS
T ss_pred             CcEEEEEE--ecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEe---CCcC---ccCCcC
Confidence            34899998  46667888999999999999999999999998               4679997   7887   557889


Q ss_pred             ccCCCCCCCCcEEEEeec
Q 026104           77 PLGFYSPLQGYRLHVIDL   94 (243)
Q Consensus        77 ~L~~y~i~dg~~IhVvD~   94 (243)
                      +|.+|+|++|++||++-.
T Consensus        78 tL~dygI~~g~~l~lv~~   95 (105)
T 1v2y_A           78 KLRDYGIRNRDEVSFIKK   95 (105)
T ss_dssp             BHHHHTCCSSEEEEEEEC
T ss_pred             CHHHcCCCCCCEEEEEeh
Confidence            999999999999999863

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.26  E-value=2.6e-11  Score=94.61  Aligned_cols=74  Identities=18%  Similarity=0.209  Sum_probs=64.5

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      .+|+|+  .+.+...++++++++||.+||++|+..+|+||+.|+|++   .|+.   | +|+++|++|++++|++|||+.
T Consensus        10 ~~i~vk--~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~ygI~~gstI~l~~   80 (114)
T 2kdi_A           10 FQIFAK--TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW---AGKQ---L-EDGRTLSDYNIQRESTLHLVL   80 (114)
T ss_dssp             CEEEEE--ETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTTTTTCCSSCEEEEEE
T ss_pred             EEEEEE--eCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEEE
Confidence            577776  355567889999999999999999999999999999998   5765   3 688999999999999999998


Q ss_pred             cCC
Q 026104           94 LDP   96 (243)
Q Consensus        94 ~~p   96 (243)
                      ..+
T Consensus        81 ~~~   83 (114)
T 2kdi_A           81 RLR   83 (114)
T ss_dssp             CCC
T ss_pred             EcC
Confidence            643

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.24  E-value=8.7e-12  Score=93.11  Aligned_cols=76  Identities=14%  Similarity=0.127  Sum_probs=64.8

Q ss_pred             CCceEEEEEEeCCCCCceeEE-EcCCCCCHHHHHHHHHhHhCCCCCceEEE---EEcCCCCeeeecCCCCCccCCCCCCC
Q 026104           10 GDESVLLRVTHSNLKSFSADV-RFPLQMSVESVKDKLWRKCGTSVNSMSLE---LYDDTNTKVAALTDNSRPLGFYSPLQ   85 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~-r~~~~~TV~~LK~KLe~~tGipp~~qrL~---l~~~~g~~~~~l~~d~~~L~~y~i~d   85 (243)
                      .+..|+|+|++.   +....+ .++++.||.+||++|+..+||||++|||+   +   .|+.   | +|+.+|++|+|++
T Consensus         4 ~~~~m~i~Vk~~---g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~---~Gk~---L-~D~~~L~~~~i~~   73 (90)
T 1v5t_A            4 GSSGLPIIVKWG---GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKV---KGKP---A-ENDVKLGALKLKP   73 (90)
T ss_dssp             CCCSCCEEEEET---TEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEE---TTEE---C-CTTSBHHHHTCCT
T ss_pred             CCceEEEEEEEC---CEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeecc---CCcC---c-CCCCCHHHcCCCC
Confidence            345688889853   346778 89999999999999999999999999999   7   5765   3 6789999999999


Q ss_pred             CcEEEEeecC
Q 026104           86 GYRLHVIDLD   95 (243)
Q Consensus        86 g~~IhVvD~~   95 (243)
                      |.+||++-+.
T Consensus        74 g~~l~l~~~~   83 (90)
T 1v5t_A           74 NTKIMMMGTR   83 (90)
T ss_dssp             TEEEEEECCC
T ss_pred             CCEEEEEecC
Confidence            9999998653

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=98.88  E-value=7.8e-13  Score=94.74  Aligned_cols=70  Identities=14%  Similarity=0.203  Sum_probs=59.6

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      ++|+|++  +.+...++.+++++||.+||++|+..+|+||+.|+|++   .|+.   | +|+++|++|++++|++||++
T Consensus         1 M~i~Vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g~~i~l~   70 (76)
T 3b1l_X            1 MIVFVRF--NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF---AGKE---L-PNHLTVQNCDLEQQSIVHIV   70 (76)
Confidence            4577763  33456678899999999999999999999999999998   5765   3 67899999999999999987

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.21  E-value=3.2e-11  Score=100.31  Aligned_cols=72  Identities=18%  Similarity=0.244  Sum_probs=63.2

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|++  +.++...+++++++||.+||++|+..+|+||++|||++   .|+.    .+|+++|++|++++|++||++=
T Consensus         1 MqI~Vk~--~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~y~I~~gstI~Lvl   71 (169)
T 3l0w_B            1 MQIFVKT--LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL   71 (169)
T ss_dssp             CEEEEEE--TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEE----CCTTSBGGGGTCCTTCEEEEEE
T ss_pred             CEEEEEe--CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCcc----ccCcCcHHHcCCCCCCEEEEEE
Confidence            4678874  45567889999999999999999999999999999999   6876    3788999999999999999985


Q ss_pred             c
Q 026104           94 L   94 (243)
Q Consensus        94 ~   94 (243)
                      .
T Consensus        72 r   72 (169)
T 3l0w_B           72 R   72 (169)
T ss_dssp             C
T ss_pred             E
Confidence            4

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.21  E-value=5.1e-11  Score=96.92  Aligned_cols=74  Identities=20%  Similarity=0.183  Sum_probs=63.6

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      .+.++|+|+  +++++...+.++++.||.+||++|+..+|+||++|+|++   .|+.    .+|+.+|++|++++|++||
T Consensus        79 ~~~m~i~vk--~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~G~~----L~d~~tL~~y~i~~g~~l~  149 (159)
T 3rt3_B           79 DEPLSILVR--NNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKP----LEDQLPLGEYGLKPLSTVF  149 (159)
T ss_dssp             CCCEEEEEE--CTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBGGGGTCCTTCEEE
T ss_pred             CCcEEEEEE--CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE---CCee----cCCCCCHHHcCCCCCCEEE
Confidence            344677776  345567888999999999999999999999999999999   6765    3688999999999999999


Q ss_pred             Eee
Q 026104           91 VID   93 (243)
Q Consensus        91 VvD   93 (243)
                      ++=
T Consensus       150 l~~  152 (159)
T 3rt3_B          150 MNL  152 (159)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            974

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=3.5e-11  Score=89.84  Aligned_cols=77  Identities=10%  Similarity=0.015  Sum_probs=61.8

Q ss_pred             eEEEEEEeCCCCCceeEE-EcCCCCCHHHHHHHHHh-HhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           13 SVLLRVTHSNLKSFSADV-RFPLQMSVESVKDKLWR-KCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~-r~~~~~TV~~LK~KLe~-~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      .++|+|++..-.....++ .++++.||.+||++|+. ..|+||++|||+|- ..|+.    .+|+++|++|++++|++||
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~-~~Gk~----L~D~~tL~~y~i~~~stl~   84 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD-PKGKS----LKDEDVLQKLPVGTTATLY   84 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS-TTSCC----CCTTCBTTTSSCCSEEEEE
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec-CCCcC----cCCCCCHHHcCCCCCCEEE
Confidence            488999843222222357 88999999999999999 59999999999872 24665    3788999999999999999


Q ss_pred             Eeec
Q 026104           91 VIDL   94 (243)
Q Consensus        91 VvD~   94 (243)
                      +-|.
T Consensus        85 ~KDL   88 (88)
T 2dzj_A           85 FRDL   88 (88)
T ss_dssp             ECCC
T ss_pred             EEeC
Confidence            9884

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.18  E-value=3.2e-11  Score=95.02  Aligned_cols=71  Identities=11%  Similarity=-0.019  Sum_probs=60.3

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCC-------C
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPL-------Q   85 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~-------d   85 (243)
                      .|.|+|....   ..+.+.+.++.||.+||+||+.++||||++|||++   +|+.    ++|+++|++|+|+       .
T Consensus         2 ~mfl~ir~~k---tti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~---~Gk~----LeD~~TLsdy~I~~~~a~~q~   71 (118)
T 2fnj_B            2 DVFLMIRRHK---TTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYK---DDQL----LDDGKTLGECGFTSQTARPQA   71 (118)
T ss_dssp             EEEEEEEEBT---EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBHHHHTCCTTTSBTTB
T ss_pred             cEEEEEecCC---EEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEE---CCeE----CCCCCCHHHcCcccccccCCC
Confidence            3566665432   25678889999999999999999999999999997   7875    3899999999999       6


Q ss_pred             CcEEEEee
Q 026104           86 GYRLHVID   93 (243)
Q Consensus        86 g~~IhVvD   93 (243)
                      +++||++=
T Consensus        72 ~stL~L~l   79 (118)
T 2fnj_B           72 PATVGLAF   79 (118)
T ss_dssp             CEEEEEEE
T ss_pred             CCEEEEEe
Confidence            99999984

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.17  E-value=5.6e-11  Score=100.76  Aligned_cols=71  Identities=20%  Similarity=0.234  Sum_probs=63.6

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|++  +.++...+.+++++||.+||++|+..+||||++|+|++   .|+.    ++|+.+|++|+|++|++||++=
T Consensus       106 MqI~VKt--l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~---~Gk~----L~D~~tL~dygI~~gstI~Lvl  176 (189)
T 3q3f_A          106 GQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL  176 (189)
T ss_dssp             EEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEE----CCTTCBGGGGTCCTTCEEEECC
T ss_pred             eeeeeec--CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE---CCEE----CCCCCCHHHCCCCCCCEEEEEE
Confidence            8899984  45567888999999999999999999999999999998   6776    3678999999999999999985

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=8.3e-11  Score=92.37  Aligned_cols=84  Identities=12%  Similarity=0.076  Sum_probs=69.6

Q ss_pred             ccccccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCC
Q 026104            4 RLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP   83 (243)
Q Consensus         4 ~~~~~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i   83 (243)
                      +......++.+.|.|..... ....+..|+++.||.+||++|...+++|++.|+|+|   +|+.+    .|+.+|.+||+
T Consensus         6 ~~~~~~~~~~itvkv~l~~~-~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy---~GKiL----KD~eTL~~~gI   77 (118)
T 2daf_A            6 SGQESVEDSLATVKVVLIPV-GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY---SGKIL----KNNETLVQHGV   77 (118)
T ss_dssp             CCCCCCCSSCEEEEEEETTT-CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE---TTEEE----CSSCCHHHHSC
T ss_pred             hhhhcccCccEEEEEEEcCC-CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE---CCeEc----CCcchHHHcCC
Confidence            34456677788888752222 235678899999999999999999999999999999   79863    78999999999


Q ss_pred             CCCcEEEEeecC
Q 026104           84 LQGYRLHVIDLD   95 (243)
Q Consensus        84 ~dg~~IhVvD~~   95 (243)
                      ++|.+||++-.+
T Consensus        78 k~g~TIhLvi~s   89 (118)
T 2daf_A           78 KPQEIVQVEIFS   89 (118)
T ss_dssp             CSSCEEEEEEEE
T ss_pred             CCCCEEEEEEec
Confidence            999999999754

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.16  E-value=6e-11  Score=98.04  Aligned_cols=72  Identities=19%  Similarity=0.255  Sum_probs=61.8

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      -+.|+|+.  +.++...+++++++||.+||++|+..+|+||++|+|++   .|+.    .+|+.+|++|++++|++||++
T Consensus        96 g~~i~Vk~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~----L~D~~tL~~y~i~~g~tl~l~  166 (172)
T 3u30_A           96 GMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLV  166 (172)
T ss_dssp             CEEEEEEE--SSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEE----CCTTSBSGGGTCCTTCEEEEC
T ss_pred             cccceeec--ccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE---CCcc----CCCCCcHHHhCCCCCCEEEEE
Confidence            35566653  45567888999999999999999999999999999998   6765    368999999999999999997


Q ss_pred             e
Q 026104           93 D   93 (243)
Q Consensus        93 D   93 (243)
                      =
T Consensus       167 ~  167 (172)
T 3u30_A          167 L  167 (172)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.15  E-value=1.9e-10  Score=90.35  Aligned_cols=75  Identities=15%  Similarity=0.188  Sum_probs=63.7

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHh------HhCC--CCCceEEEEEcCCCCeeeecCCCCCccCCC
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWR------KCGT--SVNSMSLELYDDTNTKVAALTDNSRPLGFY   81 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~------~tGi--pp~~qrL~l~~~~g~~~~~l~~d~~~L~~y   81 (243)
                      ....|.|+|+  ++++...++.++++.||.+||++|+.      .+|+  ||++|||+|   .|+.+    +|+.+|++|
T Consensus        13 ~~~~m~I~vK--tl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy---~GK~L----eD~~TL~~y   83 (116)
T 1wgh_A           13 PADMINLRLI--LVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRFL----HGNVTLGAL   83 (116)
T ss_dssp             CSSSEEEEEE--CSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE---TTEEE----CSSCBTTTT
T ss_pred             CCCeEEEEEE--eCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEE---CCcCC----CCCCcHHHc
Confidence            3446999998  45567889999999999999999999      7786  699999999   79873    788999999


Q ss_pred             CCCCC--cEEEEee
Q 026104           82 SPLQG--YRLHVID   93 (243)
Q Consensus        82 ~i~dg--~~IhVvD   93 (243)
                      +|+.+  .+|||+=
T Consensus        84 ~I~~~~~~tlhLvl   97 (116)
T 1wgh_A           84 KLPFGKTTVMHLVA   97 (116)
T ss_dssp             TCCSSCEEEEEEEE
T ss_pred             CCCCCCceEEEEEc
Confidence            99866  6789885

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.13  E-value=1.4e-10  Score=92.32  Aligned_cols=79  Identities=16%  Similarity=0.180  Sum_probs=64.8

Q ss_pred             ccccCCceEEEEEEeCCCCCcee-EEEcCCCCCHHHHHHHH-----HhHhCCCC--CceEEEEEcCCCCeeeecCCCCCc
Q 026104            6 QQIEGDESVLLRVTHSNLKSFSA-DVRFPLQMSVESVKDKL-----WRKCGTSV--NSMSLELYDDTNTKVAALTDNSRP   77 (243)
Q Consensus         6 ~~~~~~~~v~v~It~s~~~~~~~-e~r~~~~~TV~~LK~KL-----e~~tGipp--~~qrL~l~~~~g~~~~~l~~d~~~   77 (243)
                      +.-.....+.|+|++  +++... .++++++.||.+||++|     +..+|||+  ++|||++   .|+.    ++|+++
T Consensus         9 ~~~~~~~~~~i~~kt--~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy---~GK~----LeD~~T   79 (126)
T 1se9_A            9 LEAEVHNQLEIKFRL--TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS---AGKV----LENSKT   79 (126)
T ss_dssp             -CCSSCCCEEEEEEE--TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE---TTEE----CCTTSB
T ss_pred             hhhhhcccEEEEEEE--CCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEE---CCeE----CcCCCc
Confidence            333445679999984  455455 68999999999999999     67899997  8999999   7986    389999


Q ss_pred             cCCCCCCCC------cEEEEee
Q 026104           78 LGFYSPLQG------YRLHVID   93 (243)
Q Consensus        78 L~~y~i~dg------~~IhVvD   93 (243)
                      |++|+|+.|      .+|||+=
T Consensus        80 Lsdy~I~~~~~~~~v~tmhlVl  101 (126)
T 1se9_A           80 VKDYRSPVSNLAGAVTTMHVII  101 (126)
T ss_dssp             GGGGSCCTTSCTTCCEEEEEEE
T ss_pred             HHHcCCCcCCccCCcEEEEEEe
Confidence            999999998      7899885

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=8.8e-11  Score=89.94  Aligned_cols=71  Identities=21%  Similarity=0.195  Sum_probs=59.4

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      ++.+.+++   ++....+.++++.||.+||++|+..|||||++|||.++ +.|+    | +|+++|++|++++|++||++
T Consensus         9 m~~~~vk~---~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~-~~gk----L-~D~~tLs~~~I~~gstL~lv   79 (100)
T 2dzm_A            9 MLDFRVEY---RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGW-KTGD----V-EDSTVLKSLHLPKNNSLYVL   79 (100)
T ss_dssp             EEEEEEEC---SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECC-SSSC----C-CTTSBHHHHCCCSEEEEEEC
T ss_pred             eEEEEEEe---CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEcc-CCCC----C-CCcCCHHHcCCCCCCEEEEE
Confidence            56677774   34567888999999999999999999999999999753 2344    2 68899999999999999995

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.13  E-value=5.2e-12  Score=100.29  Aligned_cols=72  Identities=18%  Similarity=0.244  Sum_probs=0.0

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      |+|+|++  +.+...++++++++||.+||++|+..+|+||+.|+|++   .|+.    .+|+.+|++|+|++|++|||+=
T Consensus         1 M~I~Vk~--~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~~~I~~gsti~l~~   71 (128)
T 3u5e_m            1 MQIFVKT--LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL   71 (128)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEe--CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE---CCEE----CCCCCchhhhccCCCCEEEEEE
Confidence            4677763  34456778899999999999999999999999999998   5776    3789999999999999999985


Q ss_pred             c
Q 026104           94 L   94 (243)
Q Consensus        94 ~   94 (243)
                      .
T Consensus        72 r   72 (128)
T 3u5e_m           72 R   72 (128)
T ss_dssp             -
T ss_pred             E
Confidence            3

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.10  E-value=2.5e-10  Score=91.33  Aligned_cols=71  Identities=21%  Similarity=0.282  Sum_probs=61.5

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|+.  +.+...++.++++.||.+||++|+..+|+||+.|+|++   .|+.   | +|+++|++|++++|++||++-
T Consensus        77 ~~i~Vk~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~---~g~~---L-~d~~tL~~~~i~~~~~i~l~~  147 (152)
T 3b08_A           77 MQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL  147 (152)
T ss_dssp             EEEEEEE--SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEE
T ss_pred             cceeeee--cCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence            5667763  34457788999999999999999999999999999998   5775   3 688999999999999999974

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.10  E-value=2e-10  Score=91.33  Aligned_cols=78  Identities=13%  Similarity=0.137  Sum_probs=65.1

Q ss_pred             ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHh------HhCCC--CCceEEEEEcCCCCeeeecCCCCCccC
Q 026104            8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWR------KCGTS--VNSMSLELYDDTNTKVAALTDNSRPLG   79 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~------~tGip--p~~qrL~l~~~~g~~~~~l~~d~~~L~   79 (243)
                      +...+.|.|+|+  ++++...++.++++.||.+||++|+.      .+|+|  |++|||+|   .|+.+    +|+++|+
T Consensus        12 ~~~~~~m~I~vk--tl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy---~GK~L----eD~~TL~   82 (125)
T 2gow_A           12 NVPADMINLRLI--LVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRFL----HGNVTLG   82 (125)
T ss_dssp             SCCTTCEEEEEE--CTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES---SSSEE----ESSCBTG
T ss_pred             CCCCCeEEEEEE--eCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEE---CCcCC----CCCCcHH
Confidence            344556999998  45567889999999999999999999      88995  89999999   79873    6889999


Q ss_pred             CCCCCCCc--EEEEeec
Q 026104           80 FYSPLQGY--RLHVIDL   94 (243)
Q Consensus        80 ~y~i~dg~--~IhVvD~   94 (243)
                      +|+|+.|.  +|||+=.
T Consensus        83 ~y~I~~~~~~tlhlv~r   99 (125)
T 2gow_A           83 ALKLPFGKTTVMHLVAR   99 (125)
T ss_dssp             GGCCCTTSEEEEEEEEC
T ss_pred             HcCCCCCCceEEEEEec
Confidence            99999765  7888753

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.09  E-value=2.6e-10  Score=103.19  Aligned_cols=75  Identities=21%  Similarity=0.267  Sum_probs=65.8

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      ..+..++|+|++  +.++..++++++++||.+||++|+..+||||++|||++   .|+.   | +|+++|++|+|++|++
T Consensus       229 ~~~~~MqI~VKt--l~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~---~Gk~---L-~D~~TLsdygI~~gst  299 (307)
T 3ai5_A          229 GITGSMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKEST  299 (307)
T ss_dssp             SSCCCEEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTSBTGGGTCCTTCE
T ss_pred             CCCCeEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe---CCee---c-CCCCCHHHcCCCCCCE
Confidence            455678999984  44567789999999999999999999999999999999   5775   3 6889999999999999


Q ss_pred             EEEe
Q 026104           89 LHVI   92 (243)
Q Consensus        89 IhVv   92 (243)
                      |||+
T Consensus       300 L~Lv  303 (307)
T 3ai5_A          300 LHLV  303 (307)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9997

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.06  E-value=1.6e-11  Score=100.71  Aligned_cols=71  Identities=18%  Similarity=0.257  Sum_probs=0.0

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      |+|+|++  +.+....+++++++||.+||++|+..+||||++|+|++   .|+.    ++|+.+|++|+|++|++|||+=
T Consensus         1 MqI~VK~--l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~dygI~~gstL~Lvl   71 (152)
T 3u5c_f            1 MQIFVKT--LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL   71 (152)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEe--CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEE----ccccCcHHHcCCCCCCEEEEEe
Confidence            4677764  34446678899999999999999999999999999999   5776    3688999999999999999984

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.04  E-value=4.6e-10  Score=82.89  Aligned_cols=78  Identities=13%  Similarity=0.071  Sum_probs=60.3

Q ss_pred             EEEEEEeCCCCCceeEEE-cCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           14 VLLRVTHSNLKSFSADVR-FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r-~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      ++|.|++.+-  ... +. |+++.||.+||++|+..+||||+.|+|.+- ..++.+ .+.+++++|.+||+.+|.+|||.
T Consensus         1 m~i~vr~~~G--~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~-~p~k~l-~l~~~~~tL~~~gl~~g~~l~v~   75 (86)
T 2kzr_A            1 WRVRCKAKGG--THL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVG-YPPECL-DLSDRDITLGDLPIQSGDMLIVE   75 (86)
T ss_dssp             CCEEEEETTE--EEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEES-SCCCCC-CCCCSSCBTTTSSCCTTCEEECC
T ss_pred             CEEEEEcCCC--CEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeC-CCCccc-ccCCCCCCHHHcCCCCCCEEEEE
Confidence            3567775443  232 55 899999999999999999999999999872 223442 12347899999999999999999


Q ss_pred             ecCC
Q 026104           93 DLDP   96 (243)
Q Consensus        93 D~~p   96 (243)
                      +..+
T Consensus        76 ~~~~   79 (86)
T 2kzr_A           76 EDQT   79 (86)
T ss_dssp             CCSC
T ss_pred             eCCC
Confidence            9754

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=98.99  E-value=1e-09  Score=99.88  Aligned_cols=76  Identities=14%  Similarity=0.176  Sum_probs=63.5

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEE---EEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLE---LYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~---l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      ...|+|.|+++   +...++.++++.||++||++|+..|||||++|||+   +   .|+.    .+|+.+|++|+|++|+
T Consensus         3 ~~~i~i~Vk~~---g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~---~Gk~----l~D~~~L~~~~ik~g~   72 (320)
T 3shq_A            3 VKEVVVIVKWS---GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKY---KGKT----AADNVKISALELKPNF   72 (320)
T ss_dssp             -CEEEEEEEET---TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBS---SSSB----CCTTSBTTSSCCC--C
T ss_pred             CceEEEEEEEC---CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeeccc---CCcc----cCccccHHHcCCCCCC
Confidence            45699999974   34678899999999999999999999999999999   5   5665    4789999999999999


Q ss_pred             EEEEeecCC
Q 026104           88 RLHVIDLDP   96 (243)
Q Consensus        88 ~IhVvD~~p   96 (243)
                      +||++=+..
T Consensus        73 ~l~L~gs~~   81 (320)
T 3shq_A           73 KLMMVGSTE   81 (320)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEccch
Confidence            999997654

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=98.82  E-value=3.9e-09  Score=97.72  Aligned_cols=75  Identities=15%  Similarity=0.213  Sum_probs=62.6

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHh---HhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCC
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWR---KCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG   86 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~---~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg   86 (243)
                      .+..|+|+|++  +.++...+.++++.||.+||++|+.   .+|||+++|||+|   .|+.+    +|+++|.+|+|++|
T Consensus         4 ~~~~M~I~VKt--l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy---~GK~L----~D~~tL~dygI~~g   74 (368)
T 1oqy_A            4 GSSAVTITLKT--LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKIL----SDDVPIRDYRIDEK   74 (368)
T ss_dssp             --CCCCEEEEE--TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES---SSSEE----CSSSBTTTTCCCTT
T ss_pred             CCceEEEEEEe--CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE---CCeec----CCcCCHHHcCCCCC
Confidence            34568899984  3456778899999999999999999   7889999999998   68863    67899999999999


Q ss_pred             cEE-EEee
Q 026104           87 YRL-HVID   93 (243)
Q Consensus        87 ~~I-hVvD   93 (243)
                      ++| |++-
T Consensus        75 stIv~lv~   82 (368)
T 1oqy_A           75 NFVVVMVT   82 (368)
T ss_dssp             SCEEEEEE
T ss_pred             CEEEEEEe
Confidence            998 5553

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=98.80  E-value=2.5e-08  Score=75.24  Aligned_cols=76  Identities=7%  Similarity=0.132  Sum_probs=65.5

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      ....|+|.|+.  ..+....+++.++.++..|++++....|+|+++|||+|   +|+.+    .++.|+.+|++++|.+|
T Consensus         4 ~~~~i~ikVk~--~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l----~~~~Tp~dl~medgD~I   74 (94)
T 2io1_B            4 MNDHINLKVAG--QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTI   74 (94)
T ss_dssp             --CEEEEEEEC--TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTCEE
T ss_pred             CCCeEEEEEEC--CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEE
Confidence            34568999984  34557889999999999999999999999999999999   78873    67799999999999999


Q ss_pred             EEeec
Q 026104           90 HVIDL   94 (243)
Q Consensus        90 hVvD~   94 (243)
                      ||+-.
T Consensus        75 dv~~~   79 (94)
T 2io1_B           75 DVFQQ   79 (94)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99863

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=98.70  E-value=1.2e-07  Score=67.79  Aligned_cols=70  Identities=7%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      |+|.|++  ..+....+++.++.+++.|+++.....|++++++||.|   +|+.+    .++.|..+|++++|.+|||.
T Consensus         2 i~lkV~~--~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l----~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAG--QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEEC--TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEEC--CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEE
Confidence            7888874  34457889999999999999999999999999999999   78873    67789999999999999985

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=98.67  E-value=1.3e-07  Score=70.97  Aligned_cols=76  Identities=7%  Similarity=0.149  Sum_probs=65.4

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      +...|+|.|++  ..+....+++.++.++..|+++.....|++++++||.|   +|+.+    .++.|..+|++++|.+|
T Consensus         2 ~~~~i~ikVk~--~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l----~~~~Tp~dl~medgD~I   72 (91)
T 2io0_B            2 ANDHINLKVAG--QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTI   72 (91)
T ss_dssp             --CEEEEEEEC--TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE---TTEEC----CTTCCTTTTTCCTTEEE
T ss_pred             CCCeEEEEEEC--CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEE
Confidence            34568999984  34557889999999999999999999999999999999   78873    67799999999999999


Q ss_pred             EEeec
Q 026104           90 HVIDL   94 (243)
Q Consensus        90 hVvD~   94 (243)
                      +|+-.
T Consensus        73 dv~~~   77 (91)
T 2io0_B           73 DVFQQ   77 (91)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99853

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=98.65  E-value=1.2e-07  Score=68.98  Aligned_cols=75  Identities=15%  Similarity=0.136  Sum_probs=65.0

Q ss_pred             cCCceEEEEEEeCCCCCc-eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104            9 EGDESVLLRVTHSNLKSF-SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~-~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      .++..|+|.|++  ..++ ...+++.++.++..|+++.....|++++++||.|   +|+.+    .++.|..+|++++|.
T Consensus         3 ~~~~~i~ikV~~--~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l----~~~~Tp~~l~medgD   73 (79)
T 3a4r_A            3 LGSQELRLRVQG--KEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF---DGTKL----SGKELPADLGLESGD   73 (79)
T ss_dssp             TCCCCEEEEEEC--SSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE---TTEEC----CSCCCHHHHTCCTTC
T ss_pred             CCCCEEEEEEEe--CCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCC
Confidence            455679999984  3443 6789999999999999999999999999999999   78873    678899999999999


Q ss_pred             EEEEe
Q 026104           88 RLHVI   92 (243)
Q Consensus        88 ~IhVv   92 (243)
                      +|||.
T Consensus        74 ~Idv~   78 (79)
T 3a4r_A           74 LIEVW   78 (79)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99985

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=98.64  E-value=3.1e-09  Score=89.95  Aligned_cols=66  Identities=14%  Similarity=0.099  Sum_probs=0.0

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|++  +++....+.+++++||.+||++|+..+||||++|+|+|   .|+.   | +|+.+|+     ++++||++=
T Consensus         1 MqI~VKt--L~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf---~GK~---L-eD~~TLs-----~~STLhLvl   66 (189)
T 2xzm_9            1 MQVQVKT--LEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVN---NGFI---A-PNTELVT-----DDVTYYLSL   66 (189)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEc--CCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEe---cCeE---C-CCCCccc-----CCCEEEEEE
Confidence            4677873  44556778899999999999999999999999999999   6876   3 6788888     899999973

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=98.57  E-value=4.3e-07  Score=68.16  Aligned_cols=74  Identities=7%  Similarity=0.166  Sum_probs=64.8

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      ...|+|.|++.  .+....+++.++.++..|+++.....|++++++||.|   +|+.+    .++.|+.+|++++|.+||
T Consensus        15 ~~~i~ikV~~~--~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l----~~~~Tp~dl~medgD~Id   85 (93)
T 2d07_B           15 NDHINLKVAGQ--DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTID   85 (93)
T ss_dssp             CCEEEEEEECT--TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEE
T ss_pred             CCeEEEEEECC--CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE---CCEEc----CCCCCHHHcCCCCCCEEE
Confidence            45789999843  4457889999999999999999999999999999999   78873    677899999999999999


Q ss_pred             Eee
Q 026104           91 VID   93 (243)
Q Consensus        91 VvD   93 (243)
                      |+=
T Consensus        86 v~~   88 (93)
T 2d07_B           86 VFQ   88 (93)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            974

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.50  E-value=6e-07  Score=68.93  Aligned_cols=74  Identities=7%  Similarity=0.166  Sum_probs=65.1

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      ...|+|.|++.  ....+.+++.++.++..|+++.....|++++++||+|   +|+.+    .++.|..+|++++|.+||
T Consensus        22 ~~~I~IkVk~~--~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F---dG~~l----~~~~Tp~dl~medgD~Id   92 (104)
T 1wz0_A           22 NDHINLKVAGQ--DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTID   92 (104)
T ss_dssp             SCCEEEEEECS--SSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES---SSSBC----CTTSCTTTTTCCTTEEEE
T ss_pred             CCeEEEEEECC--CCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEc----CCCCCHHHcCCCCCCEEE
Confidence            34699999843  4457889999999999999999999999999999999   78873    677899999999999999


Q ss_pred             Eee
Q 026104           91 VID   93 (243)
Q Consensus        91 VvD   93 (243)
                      |+-
T Consensus        93 v~~   95 (104)
T 1wz0_A           93 VFQ   95 (104)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            984

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=98.39  E-value=1.9e-06  Score=66.45  Aligned_cols=73  Identities=7%  Similarity=0.104  Sum_probs=64.6

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      ...|+|.|..   .+....+++.++.++..|+++.....|++++++||.|   +|+.+    .++.|..+|++++|.+|+
T Consensus        29 ~~~I~IkV~~---~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F---dG~rl----~~~~Tp~dl~medgD~Id   98 (106)
T 2eke_C           29 ETHINLKVSD---GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIE   98 (106)
T ss_dssp             CSEEEEEEEC---SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEE
T ss_pred             CCeEEEEEec---CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE---CCeEc----CCCCCHHHcCCCCCCEEE
Confidence            3569999984   4567889999999999999999999999999999999   78873    677899999999999999


Q ss_pred             Eee
Q 026104           91 VID   93 (243)
Q Consensus        91 VvD   93 (243)
                      |+-
T Consensus        99 v~~  101 (106)
T 2eke_C           99 AHR  101 (106)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            974

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=98.33  E-value=6.8e-07  Score=69.36  Aligned_cols=74  Identities=15%  Similarity=0.154  Sum_probs=64.8

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      ..|+|.|+..  .+....+++.++.++..|+++.....|+++++|||+|   +|+.+    .++.|..+|++++|.+|+|
T Consensus        25 ~~I~IkVk~~--~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF---dG~~L----~~~~Tp~dl~mEDgD~Idv   95 (110)
T 2k8h_A           25 ALVAVKVVNA--DGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF---DGTPI----DETKTPEELGMEDDDVIDA   95 (110)
T ss_dssp             CCEEEEEEET--TSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES---SSCBC----CSSSHHHHHHCSSEEEEEE
T ss_pred             CeEEEEEECC--CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEE
Confidence            4699999854  3456789999999999999999999999999999999   78873    6779999999999999999


Q ss_pred             eec
Q 026104           92 IDL   94 (243)
Q Consensus        92 vD~   94 (243)
                      +-.
T Consensus        96 ~~~   98 (110)
T 2k8h_A           96 MVE   98 (110)
T ss_dssp             ECC
T ss_pred             EEc
Confidence            853

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=97.86  E-value=0.0001  Score=57.48  Aligned_cols=73  Identities=12%  Similarity=0.210  Sum_probs=63.5

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      ..|+|.|...  .+..+.+++.++.++..|+.......|+++.++|+.|   +|+.+    +++.|..++++++|.+|+|
T Consensus        39 ~~I~LKV~~q--dg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF---DG~rI----~~~~TP~dL~MEDgD~IdV  109 (115)
T 3kyd_D           39 EYIKLKVIGQ--DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQRI----ADNHTPKELGMEEEDVIEV  109 (115)
T ss_dssp             CEEEEEEECT--TSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE---TTEEC----CTTCCTTTTTCCTTCEEEE
T ss_pred             CeEEEEEEcC--CCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE---CCeEC----CCCCCHHHcCCCCCCEEEE
Confidence            4789999743  3446788999999999999999999999999999999   78874    6789999999999999998


Q ss_pred             ee
Q 026104           92 ID   93 (243)
Q Consensus        92 vD   93 (243)
                      .-
T Consensus       110 ~~  111 (115)
T 3kyd_D          110 YQ  111 (115)
T ss_dssp             EE
T ss_pred             Ee
Confidence            73

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=97.79  E-value=5.3e-05  Score=57.08  Aligned_cols=62  Identities=6%  Similarity=0.112  Sum_probs=47.1

Q ss_pred             EEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCC
Q 026104           15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYS   82 (243)
Q Consensus        15 ~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~   82 (243)
                      -|+|=+ ..++..+.+-+.+..||..||++|+..|||||++|+|.+   .|+.+. | +.+.+...|+
T Consensus        14 vvHVf~-~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~---eg~~l~-l-~p~~~a~~~p   75 (94)
T 4efo_A           14 VIHVFS-LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIY---EGRRLV-L-EPGRLAQHFP   75 (94)
T ss_dssp             EEEEEE-TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEEEC-C-CTTCBGGGSC
T ss_pred             eEEEEE-cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHh---CCCccc-c-CCCCccccCC
Confidence            344432 234457788889999999999999999999999999999   787654 3 5555555554

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.00022  Score=60.69  Aligned_cols=74  Identities=7%  Similarity=0.090  Sum_probs=65.1

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      ...|+|.|. .  .+.....++.++.++..|+.......|+++.++|+.|   +|+.+    .++.|..++++++|.+|+
T Consensus        27 ~~~I~LkV~-~--~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F---dG~rI----~~~~TP~dL~MEdgD~Id   96 (200)
T 3pge_A           27 ETHINLKVS-D--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIE   96 (200)
T ss_dssp             CCCEEEEEE-C--SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEE
T ss_pred             CCeEEEEEe-c--CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE---CCEEc----CCCCCHHHcCCCCCCEEE
Confidence            345899996 2  5567899999999999999999999999999999999   78874    678999999999999999


Q ss_pred             Eeec
Q 026104           91 VIDL   94 (243)
Q Consensus        91 VvD~   94 (243)
                      |+=.
T Consensus        97 v~~~  100 (200)
T 3pge_A           97 AHRE  100 (200)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9753

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.00042  Score=58.67  Aligned_cols=74  Identities=7%  Similarity=0.091  Sum_probs=64.7

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      ...|+|.|. .  .+..+.+++.++.++..|++......|+++.++|+.|   +|+.+    +++.|..+++++||.+|+
T Consensus        55 ~e~InLKVk-~--dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF---DGqRI----~~ddTPeDLdMEDGDtID  124 (207)
T 3tix_A           55 ETHINLKVS-D--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY---DGIEI----QADQTPEDLDMEDNDIIE  124 (207)
T ss_dssp             CCEEEEEEE-C--SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE---TTEEC----CSSCCTTTTTCCTTEEEE
T ss_pred             CCcEEEEEe-c--CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE---CCeec----CCCCCHHHcCCCCCCEEE
Confidence            346888886 2  4567889999999999999999999999999999999   78874    678999999999999999


Q ss_pred             Eeec
Q 026104           91 VIDL   94 (243)
Q Consensus        91 VvD~   94 (243)
                      |.=.
T Consensus       125 V~le  128 (207)
T 3tix_A          125 AHRE  128 (207)
T ss_dssp             ECCC
T ss_pred             EEEe
Confidence            9853

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=97.45  E-value=4.9e-05  Score=55.35  Aligned_cols=74  Identities=14%  Similarity=0.224  Sum_probs=53.8

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      +.|.|.+.+-   ..-+.++++.|+.+|+++|...+++++..|.|.+-.+....+  ....+.+|+++|++.|..|+|.
T Consensus         5 m~lRvrs~~G---~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l--~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            5 IIIRVQSPDG---VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEI--TASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCEEECSSE---EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGS--SSCCCCTTTTTCCCTTCCEEC-
T ss_pred             EEEEEECCCC---CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcc--cCCCCCCHHHcCCCCCCEEEEe
Confidence            5566765543   223447899999999999999999999999887732210111  1237889999999999999875

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=96.75  E-value=0.0024  Score=46.69  Aligned_cols=75  Identities=16%  Similarity=0.185  Sum_probs=55.7

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCc---eEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNS---MSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~---qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      +.|+|+|--+.-......+|+|..+|+.+|++-+-+..+++...   =.|.+.   .+..  +..+...|.+|++.+|..
T Consensus         3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~---NK~~--~L~~~~~L~d~~ItnGD~   77 (81)
T 2bps_A            3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVV---NKDK--VFSGECKLSDCGITNGDR   77 (81)
T ss_dssp             CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEG---GGTE--EEETTSBTGGGTCCTTCE
T ss_pred             cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEe---cCCE--EEcCCCEEeeCCcCCCCE
Confidence            35777775334566789999999999999999999999998631   122231   1211  347889999999999999


Q ss_pred             EEE
Q 026104           89 LHV   91 (243)
Q Consensus        89 IhV   91 (243)
                      |.|
T Consensus        78 Lei   80 (81)
T 2bps_A           78 LEI   80 (81)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=96.74  E-value=0.0068  Score=52.18  Aligned_cols=68  Identities=12%  Similarity=0.071  Sum_probs=56.7

Q ss_pred             eeEEEcCCCCCHHHHHHHHHhHhCCCCC-ceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeecC
Q 026104           27 SADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   95 (243)
Q Consensus        27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~-~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~   95 (243)
                      ...++|+...||.+|+.++-..++|+++ ..||..+...++. ..|.+.+.+|.++++.++..|.|.--+
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r~  221 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQN  221 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSC-EECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCH-hhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence            4568899999999999999999999997 6999997654443 336677899999999999998776554

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=96.48  E-value=0.026  Score=40.97  Aligned_cols=71  Identities=13%  Similarity=0.186  Sum_probs=60.0

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCC-ceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~-~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      .|.+.+.+|...  -...+++++.||.+|=+---..-|||++ .-+|.|   +|.-    .+.+.++.+|.+.||..|-|
T Consensus         9 ~~~~~~~~~~~~--dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllF---DGdR----Ldp~~tp~DlemeD~D~IDv   79 (82)
T 3goe_A            9 LITLLLRSSKSE--DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEF---EGEW----LDPNDQVQSTELEDEDQVSV   79 (82)
T ss_dssp             EEEEEEEESSSC--CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEE---TTEE----CCTTSBGGGSSCCTTCEEEE
T ss_pred             HHHHhhhccCCC--CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEE---cCcc----cCccCChhhhCCcCCceeee
Confidence            577888765443  4677889999999999999999999999 999999   7876    37889999999999998877


Q ss_pred             e
Q 026104           92 I   92 (243)
Q Consensus        92 v   92 (243)
                      +
T Consensus        80 m   80 (82)
T 3goe_A           80 V   80 (82)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=96.44  E-value=0.00048  Score=59.09  Aligned_cols=72  Identities=7%  Similarity=0.093  Sum_probs=0.0

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      ..|+|.|+ .  .+.....++.++.++..|++....+.|+++.++|+.|   +|+.+    .++.|..+++++||.+|+|
T Consensus        20 e~InLKV~-q--dGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLF---DGqRI----~dddTPadL~MEDGDtIDV   89 (227)
T 3v7o_A           20 THINLKVS-D--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIEA   89 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEEEEEe-C--CCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEE---CCEec----CCCCCHHHcCCCCCCEEEE
Confidence            35777773 2  4457788999999999999999999999999999999   78874    5788999999999999999


Q ss_pred             ee
Q 026104           92 ID   93 (243)
Q Consensus        92 vD   93 (243)
                      +=
T Consensus        90 ~l   91 (227)
T 3v7o_A           90 HR   91 (227)
T ss_dssp             --
T ss_pred             Ee
Confidence            84

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=96.33  E-value=0.019  Score=48.56  Aligned_cols=76  Identities=7%  Similarity=0.086  Sum_probs=64.3

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      ..+..|+|.|..   ....+..++..+.++..|++......|++++++|+.|   +|+.+    .++.+-....++++..
T Consensus        17 ~~~~~i~ikv~~---~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~f---dG~~i----~~~~Tpk~L~~ed~d~   86 (209)
T 3uf8_A           17 KPETHINLKVSD---GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDI   86 (209)
T ss_dssp             -CCSEEEEEEEC---SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEE---TTEEC----CTTCCTTTTTCCTTEE
T ss_pred             CCCCcEEEEEEc---CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEE---CCEec----cCCCChHHhhhccccc
Confidence            345679999973   3446789999999999999999999999999999999   78774    6788889999999999


Q ss_pred             EEEeec
Q 026104           89 LHVIDL   94 (243)
Q Consensus        89 IhVvD~   94 (243)
                      |.|.=.
T Consensus        87 I~~~~e   92 (209)
T 3uf8_A           87 IEAHRE   92 (209)
T ss_dssp             EEEECS
T ss_pred             chhhcc
Confidence            988754

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=96.31  E-value=0.012  Score=50.08  Aligned_cols=68  Identities=13%  Similarity=0.105  Sum_probs=56.5

Q ss_pred             eeEEEcCCCCCHHHHHHHHHhHhCCCCC-ceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeecC
Q 026104           27 SADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD   95 (243)
Q Consensus        27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~-~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~~   95 (243)
                      ...+.|+...||.+|+.++-..++|+++ .+||..+...++ ...|++.+.+|.++++.++..|.|.=-+
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~-~~~L~~~~~tl~~~~l~~~Q~illE~r~  209 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNT-FEPLNKPDSTIQDAGLYQGQVLVIEQKN  209 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTE-EEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCC-eeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence            4668899999999999999999999997 799998754443 3446677899999999999998876544

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=95.92  E-value=0.084  Score=37.96  Aligned_cols=80  Identities=15%  Similarity=0.025  Sum_probs=59.7

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      .++...+|.|...+  +....+||..+.||.+|..-+.. .|.++...+|.--. ..+.+. ..+.+++|.+.|+.+...
T Consensus         3 ~~~~~~~i~iRlpd--G~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~f-Prk~l~-~~d~~~TL~e~gL~p~a~   77 (84)
T 3qx1_A            3 HMEPVSKLRIRTPS--GEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTF-PRRDVT-QLDPNKSLLEVKLFPQET   77 (84)
T ss_dssp             -CCCEEEEEEECTT--SCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSS-SCCBGG-GSCTTSBTTTTTCCSEEE
T ss_pred             CCCCeEEEEEECCC--CCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCC-CCCCCc-CCCCCCCHHHCCCCCCCE
Confidence            46678889998544  45789999999999999999988 67777777765211 233321 236688999999999999


Q ss_pred             EEEee
Q 026104           89 LHVID   93 (243)
Q Consensus        89 IhVvD   93 (243)
                      |+|..
T Consensus        78 L~ve~   82 (84)
T 3qx1_A           78 LFLEA   82 (84)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            98864

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=95.78  E-value=0.051  Score=43.36  Aligned_cols=84  Identities=11%  Similarity=0.133  Sum_probs=54.9

Q ss_pred             CceEEEEEEeCCCC----CceeEEEcCCCCCHHHHHHHHHhHh--CCC------CCceEEEEEcCCCCeeeecCCCC---
Q 026104           11 DESVLLRVTHSNLK----SFSADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDTNTKVAALTDNS---   75 (243)
Q Consensus        11 ~~~v~v~It~s~~~----~~~~e~r~~~~~TV~~LK~KLe~~t--Gip------p~~qrL~l~~~~g~~~~~l~~d~---   75 (243)
                      ...+.|+|......    .-.+..++=.-+||.|+|+||-...  |+|      +.++.|+.+.+.+..+.--+.|.   
T Consensus        22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~  101 (138)
T 2r2o_A           22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE  101 (138)
T ss_dssp             CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred             eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence            34567776533211    2356778888899999999987664  443      45788888766433321112222   


Q ss_pred             --------CccCCCCCCCCcEEEEeec
Q 026104           76 --------RPLGFYSPLQGYRLHVIDL   94 (243)
Q Consensus        76 --------~~L~~y~i~dg~~IhVvD~   94 (243)
                              .||..|+|.||++|-++-.
T Consensus       102 ~~~~wkrLNTL~HY~V~Dga~l~l~~~  128 (138)
T 2r2o_A          102 VQGLWRRLNTLQHYKVPDGATVALVPC  128 (138)
T ss_dssp             EETTEEECCBHHHHTCCTTCEEEEEEC
T ss_pred             ccCCceeecchhccCCCCCCEEEEEEC
Confidence                    2899999999999988754

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=95.75  E-value=0.021  Score=42.40  Aligned_cols=78  Identities=12%  Similarity=0.145  Sum_probs=54.0

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCc-eEEEEEcCCCCeeeecCCCC---C--ccCCCCCC
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNS-MSLELYDDTNTKVAALTDNS---R--PLGFYSPL   84 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~-qrL~l~~~~g~~~~~l~~d~---~--~L~~y~i~   84 (243)
                      .+.|+|.+..+.   ...-.+++++++..+|++||..++++++.+ ..|.+.|.+|..+. +..|.   .  .|-..+=.
T Consensus         4 ~~~vkvK~~~~g---di~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~it-isSd~EL~eAl~l~~~n~~   79 (89)
T 1vd2_A            4 GSQVRVKAYYRG---DIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCT-VSSQLELEEAFRLYELNKD   79 (89)
T ss_dssp             SSCEEEEEESSS---CEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEE-CCSHHHHHHHHHHHHHTSC
T ss_pred             CCeEEEEEEeCC---eEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCccc-ccCHHHHHHHHHHHHccCC
Confidence            445778776443   367789999999999999999999998655 78889898887754 22221   1  22223344


Q ss_pred             CCcEEEEe
Q 026104           85 QGYRLHVI   92 (243)
Q Consensus        85 dg~~IhVv   92 (243)
                      ..-+|||-
T Consensus        80 ~~l~ihvf   87 (89)
T 1vd2_A           80 SELLIHVF   87 (89)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEEEc
Confidence            45567774

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=95.64  E-value=0.063  Score=40.27  Aligned_cols=75  Identities=15%  Similarity=0.127  Sum_probs=61.6

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      ....|+|.|...+.. ....+++.++.++..|...-....|+++...|+.|   +|..+    ..+.|..+++++||..|
T Consensus        22 ~~~~I~LkV~~~dg~-~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F---DG~rI----~~~~TP~dLdMEDgD~I   93 (97)
T 2jxx_A           22 TSQQLQLRVQGKEKH-QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF---DGTKL----SGRELPADLGMESGDLI   93 (97)
T ss_dssp             SCSEEEEEEEESSSS-CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE---TTEEC----CSCSCHHHHTCCTTEEE
T ss_pred             CCCeEEEEEEcCCCC-EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEE
Confidence            445789999754331 25678889999999999999999999999999999   78764    56788999999999998


Q ss_pred             EEe
Q 026104           90 HVI   92 (243)
Q Consensus        90 hVv   92 (243)
                      -|.
T Consensus        94 Dv~   96 (97)
T 2jxx_A           94 EVW   96 (97)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            763

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=95.53  E-value=0.039  Score=40.39  Aligned_cols=41  Identities=10%  Similarity=0.162  Sum_probs=37.3

Q ss_pred             ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCC
Q 026104           26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT   66 (243)
Q Consensus        26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~   66 (243)
                      +.+-+|++++++..+|.+||....+++++.++|++++.++.
T Consensus        14 ~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~   54 (83)
T 1oey_A           14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSN   54 (83)
T ss_dssp             SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCC
Confidence            47889999999999999999999999999999999986433

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=95.11  E-value=0.0036  Score=57.51  Aligned_cols=75  Identities=7%  Similarity=0.082  Sum_probs=0.0

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      +...|+|.|+.   .+.....++.++.++..|++....+.|++++++|+.|   +|+.+    .++.|..+++++||.+|
T Consensus        18 ~~~~I~LKV~~---~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlF---dG~rI----~~~~TP~~L~MEDgD~I   87 (360)
T 3ix6_A           18 PETHINLKVSD---GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDII   87 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCeEEEEEec---CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEE---CCeEC----CCCCChHHcCCCccchh
Confidence            34468888874   2346778899999999999999999999999999999   68774    57799999999999999


Q ss_pred             EEeec
Q 026104           90 HVIDL   94 (243)
Q Consensus        90 hVvD~   94 (243)
                      +|.-.
T Consensus        88 dv~~~   92 (360)
T 3ix6_A           88 EAHRE   92 (360)
T ss_dssp             -----
T ss_pred             hhhhc
Confidence            99764

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=95.05  E-value=0.15  Score=40.14  Aligned_cols=66  Identities=21%  Similarity=0.270  Sum_probs=46.7

Q ss_pred             eeEEEcCCCCCHHHHHHHHHhHh--CCC------CCceEEEEEcCCCCeeeecCC-C-----------CCccCCCCCCCC
Q 026104           27 SADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDTNTKVAALTD-N-----------SRPLGFYSPLQG   86 (243)
Q Consensus        27 ~~e~r~~~~~TV~~LK~KLe~~t--Gip------p~~qrL~l~~~~g~~~~~l~~-d-----------~~~L~~y~i~dg   86 (243)
                      ....++=.-.||.|+|+||-..+  |+|      +.+|.|+++.+....+. |.+ |           -.||..|++.||
T Consensus        18 ~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~i-L~D~D~ts~~~~~~krLNTL~HY~V~dg   96 (127)
T 3h6n_A           18 SLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYI-LRDLDDTSVVEDGRKKLNTLAHYKIPEG   96 (127)
T ss_dssp             CEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEE-CCSSSTTSCEETTEECCCBTTTTTCCTT
T ss_pred             ceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceE-eecCCCcceecCceeEeccccccCCCCC
Confidence            46677778899999999986542  444      47899999865433321 211 1           248999999999


Q ss_pred             cEEEEee
Q 026104           87 YRLHVID   93 (243)
Q Consensus        87 ~~IhVvD   93 (243)
                      ++|-++=
T Consensus        97 atv~l~~  103 (127)
T 3h6n_A           97 ASLAMSL  103 (127)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEE
Confidence            9998873

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=94.98  E-value=0.097  Score=40.31  Aligned_cols=79  Identities=19%  Similarity=0.241  Sum_probs=49.8

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHh--CCC------CCceEEEEEcCCCCeeeecCC-C--------
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDTNTKVAALTD-N--------   74 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~t--Gip------p~~qrL~l~~~~g~~~~~l~~-d--------   74 (243)
                      ..+.|++............++-.-.||.|+|+||-...  |+|      +.++.|+.+.+.+..+  |.+ |        
T Consensus        10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~i--L~D~D~ts~~~~~   87 (111)
T 4e71_A           10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQI--LSDLDLTSQREGR   87 (111)
T ss_dssp             CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEE--CCSSCTTSCC---
T ss_pred             EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCcc--ccccCccceecCc
Confidence            45667765333223357777778899999999986542  444      3578899875532222  222 1        


Q ss_pred             ---CCccCCCCCCCCcEEEEe
Q 026104           75 ---SRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        75 ---~~~L~~y~i~dg~~IhVv   92 (243)
                         -.||+.|++.||++|-++
T Consensus        88 wkrLNTL~HY~V~dgatl~l~  108 (111)
T 4e71_A           88 WKRVNTLMHYNVRDGATLILS  108 (111)
T ss_dssp             CCCCCBHHHHTCCTTCEEEEE
T ss_pred             ceEecchhhcCCCCCCEEEEE
Confidence               148899999999998765

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=94.33  E-value=0.4  Score=37.23  Aligned_cols=84  Identities=15%  Similarity=0.102  Sum_probs=61.9

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      ....++|.|...+  +....+||..+.||.+|..-|... |.++..-.|.--. ..+.+. ..+.+++|.+.++.+...|
T Consensus        40 ~~~~t~IqIRlPd--G~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~f-Prk~l~-~~d~~~TL~e~gL~psa~L  114 (124)
T 1wj4_A           40 NGPKAQLMLRYPD--GKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNF-PRRKLS-HLDYDITLQEAGLCPQETV  114 (124)
T ss_dssp             SSCEEEEEEECTT--SCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSS-SCCEET-SSCSSSCTTTTTCCSSBCC
T ss_pred             CCCcEEEEEECCC--CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCC-CCcCCc-cCCCCCCHHHCCCCCceEE
Confidence            3457888888544  457899999999999999999887 7776665554311 233321 1456899999999999999


Q ss_pred             EEeecCCCc
Q 026104           90 HVIDLDPSS   98 (243)
Q Consensus        90 hVvD~~p~s   98 (243)
                      +|....+.|
T Consensus       115 iv~~~d~~~  123 (124)
T 1wj4_A          115 FVQESGPSS  123 (124)
T ss_dssp             EEEECCSTT
T ss_pred             EEEEccCCC
Confidence            998876543

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=94.18  E-value=0.079  Score=39.94  Aligned_cols=57  Identities=16%  Similarity=0.135  Sum_probs=42.9

Q ss_pred             eEEEEEEeCCCC-----CceeEEEcCCCCCHHHHHHHHHhHhCCCCC-----ceEEEEEcCCCCeee
Q 026104           13 SVLLRVTHSNLK-----SFSADVRFPLQMSVESVKDKLWRKCGTSVN-----SMSLELYDDTNTKVA   69 (243)
Q Consensus        13 ~v~v~It~s~~~-----~~~~e~r~~~~~TV~~LK~KLe~~tGipp~-----~qrL~l~~~~g~~~~   69 (243)
                      .|+|.|...+..     .-..-++++++++..+|..||..+.++++.     ..+|.++|.+|..+.
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vt   71 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVV   71 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEE
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEE
Confidence            477777544221     224678899999999999999999997632     368999999888765

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=94.04  E-value=0.27  Score=38.12  Aligned_cols=81  Identities=15%  Similarity=0.229  Sum_probs=51.8

Q ss_pred             ceEEEEEEeCCC-CCceeEEEcCCCCCHHHHHHHHHhH--hCCC------CCceEEEEEcCC-CCeeeecCCC-------
Q 026104           12 ESVLLRVTHSNL-KSFSADVRFPLQMSVESVKDKLWRK--CGTS------VNSMSLELYDDT-NTKVAALTDN-------   74 (243)
Q Consensus        12 ~~v~v~It~s~~-~~~~~e~r~~~~~TV~~LK~KLe~~--tGip------p~~qrL~l~~~~-g~~~~~l~~d-------   74 (243)
                      ..+.|++..... ....+..++-.-.||.|+|+||-..  -|+|      +.++.|+++.+. |..+.. +.|       
T Consensus        12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~-D~D~ts~~~~   90 (117)
T 4e74_A           12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQ-DEDITTKIEN   90 (117)
T ss_dssp             CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEEC-SSSTTCCC--
T ss_pred             EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEee-cCCCccEecC
Confidence            346666643211 1224667777889999999997654  2444      357899998764 333211 111       


Q ss_pred             ----CCccCCCCCCCCcEEEEee
Q 026104           75 ----SRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        75 ----~~~L~~y~i~dg~~IhVvD   93 (243)
                          -.||+.|++.||++|-++-
T Consensus        91 ~wkrLNTL~HY~V~dgatl~l~~  113 (117)
T 4e74_A           91 DWKRLNTLAHYQVPDGSVVALVS  113 (117)
T ss_dssp             -CCCCCBHHHHTCCTTCEEEEEE
T ss_pred             cceEeccccccCCCCCCEEEEEe
Confidence                1388999999999998863

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=94.02  E-value=0.0095  Score=54.68  Aligned_cols=75  Identities=7%  Similarity=0.083  Sum_probs=0.0

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      ....|+|.|..   +......++.++.++..|++....+.|+++.++++.|   +|+.+    .++.|..++++++|.+|
T Consensus        27 ~~~~i~lkv~~---~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f---~G~~i----~~~~Tp~~l~med~d~i   96 (389)
T 4da1_A           27 PETHINLKVSD---GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQAPEDLDMEDNDII   96 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcEEEEEec---CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEc----CCCCCHHHcCCCCCCEe
Confidence            34568888863   3346778999999999999999999999999999999   68774    57789999999999999


Q ss_pred             EEeec
Q 026104           90 HVIDL   94 (243)
Q Consensus        90 hVvD~   94 (243)
                      +|.-.
T Consensus        97 ~~~~~  101 (389)
T 4da1_A           97 EAHRE  101 (389)
T ss_dssp             -----
T ss_pred             eeeec
Confidence            88653

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=93.61  E-value=0.61  Score=36.55  Aligned_cols=65  Identities=23%  Similarity=0.336  Sum_probs=45.0

Q ss_pred             eeEEEcCCCCCHHHHHHHHHhH-h---CCC----CCceEEEEEcCCCCeeeecCC--------C----CCccCCCCCCCC
Q 026104           27 SADVRFPLQMSVESVKDKLWRK-C---GTS----VNSMSLELYDDTNTKVAALTD--------N----SRPLGFYSPLQG   86 (243)
Q Consensus        27 ~~e~r~~~~~TV~~LK~KLe~~-t---Gip----p~~qrL~l~~~~g~~~~~l~~--------d----~~~L~~y~i~dg   86 (243)
                      ....++-.-.||.|+|+||-.. .   |+|    +.+|.|+++.+.+..+. .+.        +    -.||..|++.||
T Consensus        40 ~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L-~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           40 NISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKEL-LDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             EEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEE-CSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             ceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCccee-eccCCcceEecCCeeEeccccccCCCCC
Confidence            4667777889999999996443 3   776    45788888755432221 111        1    237889999999


Q ss_pred             cEEEEe
Q 026104           87 YRLHVI   92 (243)
Q Consensus        87 ~~IhVv   92 (243)
                      ++|-++
T Consensus       119 atlal~  124 (126)
T 3kuz_A          119 STIKVF  124 (126)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            998776

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=93.41  E-value=0.81  Score=34.56  Aligned_cols=81  Identities=12%  Similarity=0.082  Sum_probs=59.9

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      ....+|.|...+  +....+||+.+.||.+|.+-|....+.+...-.|.-  .--+......+.+++|.+.++.+...|+
T Consensus        11 ~~~t~IqIRlpd--G~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t--~fPrk~l~~~d~~~TL~elgL~psa~L~   86 (109)
T 2dzk_A           11 STIARIQFRLPD--GSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLAT--MFPRREFTREDYKRRLLDLELAPSASVV   86 (109)
T ss_dssp             SCCEEEEEECSS--SCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEEC--SSSCCBCCTTTTTSBTGGGTCSSEEEEE
T ss_pred             CCcEEEEEECCC--CCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEc--CCCCcCCcccccCCCHHHCCCCCceEEE
Confidence            346888888544  457899999999999999999998887655555443  2223322222568999999999999999


Q ss_pred             EeecC
Q 026104           91 VIDLD   95 (243)
Q Consensus        91 VvD~~   95 (243)
                      |....
T Consensus        87 v~~~~   91 (109)
T 2dzk_A           87 LLPAG   91 (109)
T ss_dssp             EECCS
T ss_pred             EEECc
Confidence            98863

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=93.12  E-value=0.072  Score=38.37  Aligned_cols=42  Identities=7%  Similarity=0.022  Sum_probs=37.1

Q ss_pred             eEEEcCCCCCHHHHHHHHHhHhCCC-----CCceEEEEEcCCCCeee
Q 026104           28 ADVRFPLQMSVESVKDKLWRKCGTS-----VNSMSLELYDDTNTKVA   69 (243)
Q Consensus        28 ~e~r~~~~~TV~~LK~KLe~~tGip-----p~~qrL~l~~~~g~~~~   69 (243)
                      .-++++++++..+|..||..+.+..     ....+|.++|.+|..+.
T Consensus         4 ~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vt   50 (77)
T 1pqs_A            4 FTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVV   50 (77)
T ss_dssp             EEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEE
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEE
Confidence            4688999999999999999999976     47789999999888765

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=92.22  E-value=0.19  Score=39.56  Aligned_cols=38  Identities=11%  Similarity=0.118  Sum_probs=31.5

Q ss_pred             EEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCC
Q 026104           15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVN   54 (243)
Q Consensus        15 ~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~   54 (243)
                      .|.|+  .+.+....++++.+.||.+++.-|-...||++.
T Consensus        13 ~LkV~--llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~   50 (128)
T 2kc2_A           13 PLKIR--MLDGTVKTIMVDDSKTVTDMLMTICARIGITNH   50 (128)
T ss_dssp             EEEEE--CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred             cEEEE--cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence            46666  344567889999999999999999999999954

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=91.28  E-value=0.83  Score=34.42  Aligned_cols=81  Identities=15%  Similarity=0.067  Sum_probs=58.8

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      ...++|.|...+  +....+||..+.||.+|..=|... +..+..-+|.--. -.+.+  -.+.+++|.+.|+.+...|+
T Consensus        21 ~~~~~IqiRlpd--G~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~f-Prk~l--~~d~~~TL~e~gL~p~a~L~   94 (109)
T 2cr5_A           21 EEVVTVALRCPN--GRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSF-PRRAL--EVEGGSSLEDIGITVDTVLN   94 (109)
T ss_dssp             SSEEEEEEECTT--SCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSS-SCCBC--CCCSSCBHHHHTCSSCEEEE
T ss_pred             CCcEEEEEECCC--CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCC-CCcCC--CCCCCCCHHHcCCCCCeEEE
Confidence            457899998544  457899999999999999999865 5555555544311 23332  12568999999999999999


Q ss_pred             EeecCCC
Q 026104           91 VIDLDPS   97 (243)
Q Consensus        91 VvD~~p~   97 (243)
                      |.+..+.
T Consensus        95 Ve~~~~~  101 (109)
T 2cr5_A           95 VEEKEQS  101 (109)
T ss_dssp             EEECCCC
T ss_pred             EEeCCCC
Confidence            9887653

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=90.96  E-value=0.25  Score=38.82  Aligned_cols=35  Identities=11%  Similarity=0.065  Sum_probs=32.4

Q ss_pred             eEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEc
Q 026104           28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYD   62 (243)
Q Consensus        28 ~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~   62 (243)
                      ...|+..++|+.+||..+...+|+|+++|||....
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~   92 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQ   92 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECC
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEee
Confidence            46799999999999999999999999999999964

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=89.07  E-value=3.5  Score=30.66  Aligned_cols=75  Identities=12%  Similarity=0.092  Sum_probs=61.2

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      ....|+|.|+.   .+...-.++-.+..+..|..-.....|+++++.|+.|   +|..+    ..+.|-.+.++++|..|
T Consensus        18 ~~~~IniKV~~---~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlf---DG~rI----~~~~TP~~L~meD~DiI   87 (95)
T 2l76_A           18 TPRLFPLKIRC---RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLF---GETEL----SPTATPRTLKLGVADII   87 (95)
T ss_dssp             CCCCEEEEEEC---SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEE---TTEEC----CTTSCHHHHTCCSSCEE
T ss_pred             CCCeEEEEEEc---CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEE---CCcCC----CCCCCHhHcCCCCCCEE
Confidence            34459999973   2345667788999999999999999999999999999   78764    56777788899999999


Q ss_pred             EEeec
Q 026104           90 HVIDL   94 (243)
Q Consensus        90 hVvD~   94 (243)
                      -|.-+
T Consensus        88 D~~~~   92 (95)
T 2l76_A           88 DCVVL   92 (95)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88765

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=88.47  E-value=2.9  Score=40.90  Aligned_cols=82  Identities=13%  Similarity=0.183  Sum_probs=53.0

Q ss_pred             CceEEEEEEeCCC----CCceeEEEcCCCCCHHHHHHHHHhH--hCCC------CCceEEEEEcCCCCeeeecCC-C---
Q 026104           11 DESVLLRVTHSNL----KSFSADVRFPLQMSVESVKDKLWRK--CGTS------VNSMSLELYDDTNTKVAALTD-N---   74 (243)
Q Consensus        11 ~~~v~v~It~s~~----~~~~~e~r~~~~~TV~~LK~KLe~~--tGip------p~~qrL~l~~~~g~~~~~l~~-d---   74 (243)
                      ...+.|.|.....    ....+..++-.-.||.|+|+||-..  -|+|      +.++.|+.+.+.+..+. |.+ |   
T Consensus       255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~i-L~D~D~ts  333 (644)
T 3hm6_X          255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLI-LSDEDVTS  333 (644)
T ss_dssp             CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEE-ECSSSTTC
T ss_pred             ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCcee-ecccCccc
Confidence            3456777753211    1234677788889999999998743  2444      36778888765332221 212 2   


Q ss_pred             --------CCccCCCCCCCCcEEEEee
Q 026104           75 --------SRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        75 --------~~~L~~y~i~dg~~IhVvD   93 (243)
                              -.||+.|+|.||++|-++-
T Consensus       334 ~~~~~wkrLNTL~HY~V~dga~v~L~p  360 (644)
T 3hm6_X          334 EVQGLWRRLNTLQHYKVPDGATVALVP  360 (644)
T ss_dssp             CEETTEEECCBTTTTTCCTTCEEEEEE
T ss_pred             eecCcceeecchhhcCCCCCcEEEEEe
Confidence                    1489999999999998864

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=88.38  E-value=1.2  Score=40.08  Aligned_cols=64  Identities=19%  Similarity=0.210  Sum_probs=49.2

Q ss_pred             eeEEEcCCCCCHHHHHHHHHhHhC----CCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           27 SADVRFPLQMSVESVKDKLWRKCG----TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        27 ~~e~r~~~~~TV~~LK~KLe~~tG----ipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      .-..+|++++||.+.+.+|.+...    .++++=-|.+.+.+++.-..| +..++|.+|+++++..|+.
T Consensus        14 ~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl-~~~~~l~~y~~~~~~~l~~   81 (371)
T 3ivf_A           14 VKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWL-EAGKALDYYMLRNGDTMEY   81 (371)
T ss_dssp             EEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEEC-CTTSBGGGGTCCTTCEEEE
T ss_pred             eEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEec-cCCCCHHHhCCCCCceeec
Confidence            567899999999999999866653    367777888877655543335 5567999999999987654

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=87.94  E-value=4.3  Score=39.58  Aligned_cols=82  Identities=18%  Similarity=0.223  Sum_probs=54.4

Q ss_pred             CceEEEEEEeCCC-CCceeEEEcCCCCCHHHHHHHHHhHh--CCC------CCceEEEEEcCC-CCeeeecCCCC-----
Q 026104           11 DESVLLRVTHSNL-KSFSADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDT-NTKVAALTDNS-----   75 (243)
Q Consensus        11 ~~~v~v~It~s~~-~~~~~e~r~~~~~TV~~LK~KLe~~t--Gip------p~~qrL~l~~~~-g~~~~~l~~d~-----   75 (243)
                      ...+.|.|..... ....+..++-.-.||.|+|+||-...  |+|      +.++.|+.+.+. |..+. -+.|.     
T Consensus       231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL-~D~D~ts~~~  309 (627)
T 3ig3_A          231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIIL-QDEDITTKIE  309 (627)
T ss_dssp             CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEE-CSSSTTCCEE
T ss_pred             ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceee-ccCCcccccc
Confidence            3457777764322 12357778888999999999986542  443      467888888664 33321 12221     


Q ss_pred             ------CccCCCCCCCCcEEEEee
Q 026104           76 ------RPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        76 ------~~L~~y~i~dg~~IhVvD   93 (243)
                            .||..|+|.||++|-++-
T Consensus       310 ~~wkrLNTL~HY~V~Dga~v~L~p  333 (627)
T 3ig3_A          310 CDWKRVNSLAHYQVTDGSLVALVP  333 (627)
T ss_dssp             TTEEECCBTTTTTCCTTCEEEEEE
T ss_pred             CceeEecchhhcCCCCCceEEEEe
Confidence                  389999999999998874

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=81.42  E-value=5  Score=29.53  Aligned_cols=73  Identities=15%  Similarity=0.147  Sum_probs=58.8

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      +.|.|-..+  .+...+++.|+.|+.|+=+.--.++|+++++=.|.+   .++.+    |-+.++..-|+.+|+.+.++-
T Consensus        10 m~v~Vl~~n--~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh---~~k~l----DLSlpfRlsgLpnnAkLELv~   80 (90)
T 2al3_A           10 SAVSVLAPN--GRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKF---QRTVL----DLSLQWRFANLPNNAKLEMVP   80 (90)
T ss_dssp             CCEEEECTT--SCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEE---TTEEE----SSSCBHHHHCCCSSCEEEEEC
T ss_pred             cEEEEEcCC--CcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEe---CCEec----cccceeEecCCCCCCEEEEEE
Confidence            467776443  357788899999999999999999999998888887   45542    667888889999999999987


Q ss_pred             cC
Q 026104           94 LD   95 (243)
Q Consensus        94 ~~   95 (243)
                      ..
T Consensus        81 ~s   82 (90)
T 2al3_A           81 VS   82 (90)
T ss_dssp             SS
T ss_pred             cc
Confidence            64

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1tova_	98	b.34.10.1 (A:) Cytoskeleton-associated protein F53	2e-35
d2coza1	109	b.34.10.1 (A:8-116) Centrosome-associated protein	8e-32
d1whga_	113	b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1	2e-30
d2hqha1	72	b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapien	1e-28
d1whha_	102	b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR	1e-28
d2cp6a1	160	b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [	2e-28
d2cowa1	88	b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Hu	7e-27
d2cp0a1	83	b.34.10.1 (A:7-89) CLIP170-related 59kda protein C	8e-27
d2e3ha1	71	b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapien	9e-27
d1whka_	91	b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse	1e-26
d2e3ia1	71	b.34.10.1 (A:58-128) Restin {Human (Homo sapiens)	2e-26
d1whja_	102	b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse	5e-26
d1whla_	95	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	7e-25
d1ixda_	104	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	4e-24
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	4e-23
d1whma_	92	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	6e-22
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	9e-21
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	1e-11

>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cytoskeleton-associated protein F53F4.3
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  119 bits (300), Expect = 2e-35
 Identities = 49/95 (51%), Positives = 62/95 (65%), Gaps = 4/95 (4%)

Query: 148 SNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNG 204
           S+   E+   NI VG+RCEV  GA   +RG V YVG  +    G WVG++YDEP+GK++G
Sbjct: 4   SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKF-KEGVWVGVKYDEPVGKNDG 62

Query: 205 IVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFE 239
            V GVRYF+C P +G  VRP  VKVGD+PE    E
Sbjct: 63  SVAGVRYFDCDPKYGGFVRPVDVKVGDFPELSIDE 97

>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Centrosome-associated protein 350
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (277), Expect = 8e-32
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)

Query: 132 KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWV 191
            E+ ++++PS     L++    D   +  +GDR  +    + G++++ G+    A GFW 
Sbjct: 3   HEQQVTESPS-----LASVPTADELFDFHIGDRVLIG-NVQPGILRFKGETSF-AKGFWA 55

Query: 192 GIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDE 242
           G++ D+P G +NG   G+ YFEC   HG    P K+        D  + +E
Sbjct: 56  GVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIPENFDDYVDINE 106

>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Tubulin-specific chaperone B (SKAP1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (269), Expect = 2e-30
 Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 6/104 (5%)

Query: 133 EKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPGF 189
           E++ +Q  +    +LS    +   S I+VG RCEV   D   +RG V YVG  +   PG+
Sbjct: 9   EELRAQQEAEAAQRLSEE--KAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDF-KPGY 65

Query: 190 WVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 233
           WVG++YDEPLGK++G V G RYFEC   +GA V+P  V VGD  
Sbjct: 66  WVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDSG 109

>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Dynactin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 1e-28
 Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
           + VG R EV     RG V YVG     A G WVG+  DE  GK++G V+G +YF C   H
Sbjct: 2   LRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 60

Query: 219 GAMVRPDKVKV 229
           G  VR  +++V
Sbjct: 61  GIFVRQSQIQV 71

>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (255), Expect = 1e-28
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
              VGD+  V  G K+G+V++ G+ +  APG+W GI+ D+P GKH+G V GVRYF C P 
Sbjct: 25  KAEVGDQVLV-AGQKQGIVRFYGKTDF-APGYWYGIELDQPTGKHDGSVFGVRYFTCAPR 82

Query: 218 HGAMVRPDKV-KVGDYP 233
           HG      ++ ++G  P
Sbjct: 83  HGVFAPASRIQRIGSGP 99

>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 2e-28
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 137 SQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYD 196
                ++ N      ++     + +GDR  V  G K GVV+++G+ +  A G W G++ D
Sbjct: 10  KTASESISNLSEAGSIKKGERELKIGDRVLV-GGTKAGVVRFLGETDF-AKGEWCGVELD 67

Query: 197 EPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDP 237
           EPLGK++G V G RYF+C P +G      KV    +P   P
Sbjct: 68  EPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTP 108

>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Kinesin-like protein kif13b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.2 bits (242), Expect = 7e-27
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 148 SNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVK 207
            +   +++   +  G+   V    K GVV+YVG A+    G WVG++ D P GK++G + 
Sbjct: 7   DSEEADEVPEWLREGEFVTV-GAHKTGVVRYVGPADF-QEGTWVGVELDLPSGKNDGSIG 64

Query: 208 GVRYFECPPLHGAMVRPDKVK 228
           G +YF C P +G +VRP +V+
Sbjct: 65  GKQYFRCNPGYGLLVRPSRVR 85

>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.1 bits (242), Expect = 8e-27
 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
            + +GDR  +D G K G +++ G  E  A G WVG++ DEP GK++G V GVRYF CPP 
Sbjct: 10  GLRLGDRVLLD-GQKTGTLRFCGTTEF-ASGQWVGVELDEPEGKNDGSVGGVRYFICPPK 67

Query: 218 HGAMVRPDKVKVG 230
            G      K+   
Sbjct: 68  QGLFASVSKISKA 80

>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP-115
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.3 bits (240), Expect = 9e-27
 Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 3/73 (4%)

Query: 159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 218
           + +GDR  V  G K GVV+++G+ +  A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 1   LKIGDRVLV-GGTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 58

Query: 219 GAMVRPDKV-KVG 230
           G      KV K+G
Sbjct: 59  GLFAPVHKVTKIG 71

>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 91

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.8 bits (241), Expect = 1e-26
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 157 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 216
             +  G +  +    +   V+YVG  +  A G W+G++     GK++G V   RYF C P
Sbjct: 11  VKLHEGSQVLLTSSNEMATVRYVGPTDF-ASGIWLGLELRSAKGKNDGAVGDKRYFTCKP 69

Query: 217 LHGAMVRPDKVK 228
            +G +VRP +V 
Sbjct: 70  NYGVLVRPSRVT 81

>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (238), Expect = 2e-26
 Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 161 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 220
           VG+R  V+ G K G ++++G+ +  APG W GI  DEP+GK++G V GVRYF+C PL G 
Sbjct: 3   VGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGI 60

Query: 221 MVRPDKVK 228
             RP K+ 
Sbjct: 61  FTRPSKLT 68

>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.3 bits (237), Expect = 5e-26
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 158 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 217
            + +GDR  +  G K G +++ G  E  A G W GI+ DEP GK+NG V  V+YF+C P 
Sbjct: 24  GLKLGDRVVI-AGQKVGTLRFCGTTEF-ASGQWAGIELDEPEGKNNGSVGRVQYFKCAPK 81

Query: 218 HGAMVRPDKV-KVGDYPER 235
           +G      K+ K+ D    
Sbjct: 82  YGIFAPLSKISKLKDSGPS 100

>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.2 bits (229), Expect = 7e-25
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 157 SNITVGDRCEV----DPGAKRGVVKYVG--QAESIAPGFWVGIQYDE---PLGKHNGIVK 207
           S I VG   +V          GVV++ G   AE    G + G++  E     G  +G+ +
Sbjct: 6   SGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQ 65

Query: 208 GVRYFECPPLHGAMVRPDKVKVGDYP 233
           G + F+C    G  V  DK+++ +  
Sbjct: 66  GKQLFQCDEDCGVFVALDKLELIESG 91

>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (225), Expect = 4e-24
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 157 SNITVGDRCEVDPGAKR-GVVKYVGQAESIAPGFWVGIQY-DEPLGKHNGIVKGVRYFEC 214
             + VG   EV       GV++++GQ          G++  DE  G  +G  +G RYF C
Sbjct: 16  HGLEVGSLAEVKENPPFYGVIRWIGQPPG-LNEVLAGLELEDECAGCTDGTFRGTRYFTC 74

Query: 215 PPLHGAMVRPDKVKVG-DYPERDP 237
                  V+    +    +    P
Sbjct: 75  ALKKALFVKLKSCRPDSRFASLQP 98

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.7 bits (217), Expect = 4e-23
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 10  GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69
           G   V++ ++ S+L SF ++ R+   +++   K KL    G+  + M LELY   +   +
Sbjct: 4   GSSGVMVFIS-SSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYS 62

Query: 70  ALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSG 102
            L      LG Y    G R+HVID   S  +SG
Sbjct: 63  KLDQEDALLGSYPVDDGCRIHVIDHSGSGPSSG 95

>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (209), Expect = 6e-22
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 157 SNITVGDRCEVDP--GAKRGVVKYVGQAESI-APGFWVGIQYDEPLGKHNGIVKGVRYFE 213
             + +  R  +      + G V +        + G++VG+  D P+G  +G   GV+   
Sbjct: 8   PPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCS 67

Query: 214 C-PPLHGAMVRPDKV 227
                   ++  + +
Sbjct: 68  FACVESTILLHINDI 82

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 81.5 bits (201), Expect = 9e-21
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAAL 71
          E   L +T +N   F  + ++P  MS+  +K KL    GT+V+SM ++L+D  +     L
Sbjct: 3  EVYDLEIT-TNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGEL 61

Query: 72 TDNSRPLGFYSPLQGYRLHVIDLDPSS 98
          TD ++ L       GYR+H +D+   +
Sbjct: 62 TDGAKSLKDLGVRDGYRIHAVDVTGGN 88

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.6 bits (139), Expect = 1e-11
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 10 GDESVLLRVTHSN-LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKV 68
            + + L++  SN  +    + + P  M+V+ VK  L R     V+ + L          
Sbjct: 6  SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGR 65

Query: 69 AALTDN-SRPLGFYSPLQGYRLHVIDLDPSS 98
              +N  +PL FYS   G  L V    PSS
Sbjct: 66 EIELENDLQPLQFYSVENGDCLLVRWSGPSS 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1tova_	98	Cytoskeleton-associated protein F53F4.3 {Caenorhab	100.0
d1whga_	113	Tubulin-specific chaperone B (SKAP1) {Mouse (Mus m	99.96
d2coza1	109	Centrosome-associated protein 350 {Human (Homo sap	99.96
d2hqha1	72	Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2e3ia1	71	Restin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2cp0a1	83	CLIP170-related 59kda protein CLIPR-59 (1500005P14	99.96
d2e3ha1	71	CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1whha_	102	CLIP170-related 59kda protein CLIPR-59 (1500005P14	99.95
d2cowa1	88	Kinesin-like protein kif13b {Human (Homo sapiens)	99.95
d1whka_	91	Restin-like protein 2, Rsnl2 {Mouse (Mus musculus)	99.95
d1whja_	102	Restin-like protein 2, Rsnl2 {Mouse (Mus musculus)	99.94
d1ixda_	104	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.94
d2cp6a1	160	Restin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1whla_	95	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.93
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.91
d1whma_	92	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.91
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.88
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.76
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.52
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.51
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.48
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.47
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.47
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.47
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.42
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.42
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.41
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.41
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.41
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.4
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.39
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.39
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.38
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.38
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.37
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.36
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.34
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.32
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.32
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.31
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.3
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.28
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.28
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.27
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.27
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.25
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.12
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	98.92
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	98.65
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	98.51
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	97.99
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	97.4
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	94.95
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	94.76
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	94.21
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	93.75
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	90.63
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	88.63
d1y8xb1	92	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	85.25
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	83.06

>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cytoskeleton-associated protein F53F4.3
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1e-33  Score=214.85  Aligned_cols=87  Identities=57%  Similarity=1.080  Sum_probs=79.2

Q ss_pred             hhhcCCCCCCCEEEEcCC---CceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCccc
Q 026104          153 EDLCSNITVGDRCEVDPG---AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV  229 (243)
Q Consensus       153 ~~~~~~~~vG~rv~v~~~---~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  229 (243)
                      ++.+..|+||+||+|..+   .++|+|||+|++++ .+|+|+|||||+|.|+|||+++|+|||+|+|+||+||||++|++
T Consensus         9 ~~~~~~l~VG~RV~V~~~~~~~~~G~vryiG~~~~-~~g~~vGVelD~p~G~~dG~~~g~~YF~c~~~~G~Fv~~~~v~~   87 (98)
T d1tova_           9 EEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKF-KEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKV   87 (98)
T ss_dssp             HHHHTTCCTTCEEEECCTTSCCEEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEEE
T ss_pred             hhhccCCccCCEEEEecCCCCceeEEEEEeeecCC-CCceEEEEEeCCCCCCcCCEECCEEEEEcCCCCEEEeChhheEE
Confidence            355678999999999632   47999999999999 89999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCC
Q 026104          230 GDYPERDPFEEDEI  243 (243)
Q Consensus       230 g~f~~~d~~~~dE~  243 (243)
                      |||||+|   +|||
T Consensus        88 gd~P~~d---~de~   98 (98)
T d1tova_          88 GDFPELS---IDEI   98 (98)
T ss_dssp             SCCCCCC---CSCC
T ss_pred             CCCCCCC---cccC
Confidence            9999987   4554

>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Tubulin-specific chaperone B (SKAP1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=8.1e-31  Score=203.57  Aligned_cols=81  Identities=52%  Similarity=0.991  Sum_probs=74.3

Q ss_pred             hhcCCCCCCCEEEEcCC---CceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC
Q 026104          154 DLCSNITVGDRCEVDPG---AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  230 (243)
Q Consensus       154 ~~~~~~~vG~rv~v~~~---~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  230 (243)
                      ..+..+.||+||+|...   .++|+|||+|++++ .+|+|+|||||+|.|||||+++|+|||+|+|+||+||+|++|++|
T Consensus        28 ~~~~~~~VG~rv~V~~~~~~~r~G~vryvG~~~~-~~g~~~GVelD~p~Gk~dG~~~G~rYF~c~~~~G~fv~~~~v~~~  106 (113)
T d1whga_          28 AQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDF-KPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVG  106 (113)
T ss_dssp             HHHTTSCSSCEEEECCSSSSCEEEEEEEEEECSS-SSSEEEEEEESSSCCSBBSEETTEECSCCCTTTEEEECGGGEEEE
T ss_pred             hhcccCcCCCEEEEEcCCCCceEEEEEEeeecCC-CCCeEEEEEecCCCCCCCCEECCEEEEecCCCcEEEeCHHHeEEC
Confidence            34567999999999622   46899999999999 899999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 026104          231 DYPER  235 (243)
Q Consensus       231 ~f~~~  235 (243)
                      ||||-
T Consensus       107 ~~~p~  111 (113)
T d1whga_         107 DSGPS  111 (113)
T ss_dssp             ECCSS
T ss_pred             CCCCC
Confidence            99983

>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Centrosome-associated protein 350
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-30  Score=200.48  Aligned_cols=83  Identities=30%  Similarity=0.653  Sum_probs=75.1

Q ss_pred             hcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCCC
Q 026104          155 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPE  234 (243)
Q Consensus       155 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~~  234 (243)
                      .+..|+||+||.|. +.++|+|||||++++ .+|+|+|||||+|.|||||+++|+|||+|+|+||+|||+++|+..+.+.
T Consensus        21 ~~~~~~vG~rV~V~-~~~~G~vryiG~~~~-~~g~~vGVElDep~GkndGtv~G~~YF~C~~~~GiFv~~~~v~~~~~~~   98 (109)
T d2coza1          21 ELFDFHIGDRVLIG-NVQPGILRFKGETSF-AKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIPENF   98 (109)
T ss_dssp             SCSSCCTTEEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEECCCTTC
T ss_pred             ccccCccCCEEEEC-CCeeEEEEEEeecCC-CCCcEEEEEecCCCCCCCCEECCEEEEecCCCcEEEeCHHHcEecCCCc
Confidence            35679999999996 578999999999999 8999999999999999999999999999999999999999999887665


Q ss_pred             CCCCC
Q 026104          235 RDPFE  239 (243)
Q Consensus       235 ~d~~~  239 (243)
                      .|..+
T Consensus        99 ~d~~d  103 (109)
T d2coza1          99 DDYVD  103 (109)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            45433

>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Dynactin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.4e-30  Score=185.22  Aligned_cols=70  Identities=44%  Similarity=0.797  Sum_probs=66.4

Q ss_pred             CCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCccc
Q 026104          159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV  229 (243)
Q Consensus       159 ~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  229 (243)
                      |+||+||+|....++|+|||+|++++ .+|.|+|||||||.||||||++|+|||+|+|+||+||++++|++
T Consensus         2 l~vG~rV~v~~~~~~G~vryvG~~~~-~~g~~vGVeldep~GkndGt~~G~~YF~C~~~~G~Fv~~~~v~v   71 (72)
T d2hqha1           2 LRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQV   71 (72)
T ss_dssp             CSTTCEEEETTTCCEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESSCCCTTTEEEECGGGEEE
T ss_pred             cccCCEEEEcCCCEEEEEEEecccCC-CCCcEEEEEEccCCCCCCCEECCEEEEecCCCcEEEechHHEEE
Confidence            78999999974578999999999999 89999999999999999999999999999999999999999875

>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.8e-30  Score=182.22  Aligned_cols=69  Identities=48%  Similarity=1.008  Sum_probs=65.3

Q ss_pred             CCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCccc
Q 026104          159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV  229 (243)
Q Consensus       159 ~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  229 (243)
                      ++||+||.|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||+|++|+.
T Consensus         1 f~vG~rV~v~-~~~~G~vryvG~~~~-~~g~~vGVEld~p~Gk~dGt~~G~~YF~c~~~~G~Fv~~~~v~k   69 (71)
T d2e3ia1           1 FRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR   69 (71)
T ss_dssp             CCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEES
T ss_pred             CccCCEEEEC-CCcEEEEEEEeecCC-CCCcEEEEEECCCCCCCCCEECCEEEEecCCCcEEEeCHHHEEe
Confidence            5799999996 578999999999999 89999999999999999999999999999999999999999864

>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=187.02  Aligned_cols=74  Identities=42%  Similarity=0.842  Sum_probs=69.3

Q ss_pred             hcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC
Q 026104          155 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  230 (243)
Q Consensus       155 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  230 (243)
                      ++..++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|+..
T Consensus         7 s~~~l~vG~rV~v~-~~~~G~vryvG~~~~-~~g~~vGVElD~p~GkndGt~~G~rYF~C~~~~G~Fv~~~~v~~~   80 (83)
T d2cp0a1           7 SALGLRLGDRVLLD-GQKTGTLRFCGTTEF-ASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKA   80 (83)
T ss_dssp             HHHTCCTTCEEEET-TTEEEEEEEEECCSS-SCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEEC
T ss_pred             EecCCccCCEEEEC-CCceEEEEEeeecCC-CCCcEEEEEECCCCCCCCCEECCEEEeecCCCceEEcCHHHcccc
Confidence            45689999999996 578999999999999 899999999999999999999999999999999999999999765

>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP-115
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=181.00  Aligned_cols=68  Identities=46%  Similarity=0.932  Sum_probs=64.9

Q ss_pred             CCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcc
Q 026104          159 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK  228 (243)
Q Consensus       159 ~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  228 (243)
                      |+||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.
T Consensus         1 l~vG~rV~v~-~~~~G~vryvG~~~~-~~g~~~GVeld~~~Gk~dG~~~G~~YF~c~~~~G~Fv~~~kv~   68 (71)
T d2e3ha1           1 LKIGDRVLVG-GTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVT   68 (71)
T ss_dssp             CCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEE
T ss_pred             CccCCEEEEC-CCceEEEEEecccCC-CCCCEEEEEECCCCCCCCCEECCEEEEecCCCCEEEeCHHHcE
Confidence            6899999996 678999999999999 8999999999999999999999999999999999999999984

>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.7e-29  Score=191.78  Aligned_cols=77  Identities=43%  Similarity=0.951  Sum_probs=72.7

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcc-cCCCCC
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK-VGDYPE  234 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~-~g~f~~  234 (243)
                      ...++||+||.|. +.++|+|||+|++++ ..|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|+ ++|||+
T Consensus        23 ~~~~~vGdrV~v~-~~~~G~vryvG~~~~-~~g~~~GVEld~p~GkndGt~~G~rYF~C~p~~GiFv~~~~v~~~~d~p~  100 (102)
T d1whha_          23 GAKAEVGDQVLVA-GQKQGIVRFYGKTDF-APGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGPS  100 (102)
T ss_dssp             CCSSCTTSEEEET-TTEEEEEEEEEECSS-SSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSCTT
T ss_pred             cCcCcccCEEEEC-CCceEEEEEecccCC-CCCeEEEEEeCCCCCCCCCEECCEEEEecCCCcEEEeCHHHceECCCCCC
Confidence            4679999999996 678999999999999 8999999999999999999999999999999999999999998 679986

>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Kinesin-like protein kif13b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-29  Score=186.84  Aligned_cols=75  Identities=39%  Similarity=0.764  Sum_probs=69.5

Q ss_pred             hhcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC
Q 026104          154 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  230 (243)
Q Consensus       154 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  230 (243)
                      +....+.+|+||.|. +.++|+|||+|++++ .+|+|+|||||+|.|||||+++|+|||+|+++||+||||++|+..
T Consensus        13 ~~~~~l~vG~rV~V~-~~~~G~vryiG~~~~-~~g~~vGVeld~p~GkndG~~~G~~YF~c~~~~G~Fv~~~~v~~~   87 (88)
T d2cowa1          13 EVPEWLREGEFVTVG-AHKTGVVRYVGPADF-QEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRA   87 (88)
T ss_dssp             CCCSSCCTTCEEECS-SSCEEEEEEEECCSS-SSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEEC
T ss_pred             cccccCcccCEEEEC-CCcEEEEEEeeecCC-CCCcEEEEEeCCCCCCCCCEECCEEEEecCCCcEEEecHHHcEEC
Confidence            445679999999996 678999999999999 899999999999999999999999999999999999999999754

>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1e-28  Score=184.59  Aligned_cols=75  Identities=31%  Similarity=0.647  Sum_probs=70.1

Q ss_pred             hcCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccC
Q 026104          155 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG  230 (243)
Q Consensus       155 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  230 (243)
                      ....|.+|+||+|..+.++|+|||+|++++ .+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-
T Consensus         9 ~~~~l~vG~rV~v~~~~~~G~vryvG~~~~-~~g~~vGVElD~p~GkndGtv~G~~YF~C~~~~G~Fv~~~~v~~~   83 (91)
T d1whka_           9 GTVKLHEGSQVLLTSSNEMATVRYVGPTDF-ASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYR   83 (91)
T ss_dssp             CCCCCCSSCEEEESSSCCEEEECCCEECSS-SSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECC
T ss_pred             CCcccccCCEEEEcCCCeEEEEEEeeecCC-CCCCEEEEEeCCCCCCCCCEECCEEEeecCCCceEEeCHHHeEEc
Confidence            356799999999976678999999999999 899999999999999999999999999999999999999999764

>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.9e-28  Score=184.80  Aligned_cols=77  Identities=38%  Similarity=0.711  Sum_probs=70.0

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCccc-CCCCC
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV-GDYPE  234 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~-g~f~~  234 (243)
                      ...|+||+||+|. +.++|+|||+|++++ ..|+|+|||||+|.|||||+++|+|||+|+++||+||++++|.. .+.+|
T Consensus        22 ~~~l~vG~rV~v~-~~~~G~VryvG~~~~-~~g~~vGVeldep~GkndGt~~G~~YF~C~~~~GiFv~~~~v~~~~~~~p   99 (102)
T d1whja_          22 SLGLKLGDRVVIA-GQKVGTLRFCGTTEF-ASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSGP   99 (102)
T ss_dssp             HHTCCTTCEEEET-TTEEEEEEEEEECSS-SCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEESSSCCC
T ss_pred             ccCCccCCEEEEC-CCCeEEEEEeeecCC-CCCcEEEEEECCCCCCCCCEECCEEEeecCCCcEEEecHHHeeEcCCCCC
Confidence            4579999999996 578999999999999 89999999999999999999999999999999999999999964 34443

>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.8e-28  Score=184.09  Aligned_cols=81  Identities=23%  Similarity=0.507  Sum_probs=73.2

Q ss_pred             cCCCCCCCEEEEcCC-CceeEEEEecccCCCCCccEEEEEEe-CCCCccCcEECCEEeeecCCCceeeecCCCcccC-CC
Q 026104          156 CSNITVGDRCEVDPG-AKRGVVKYVGQAESIAPGFWVGIQYD-EPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DY  232 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~-~~~G~vryvG~~~~~~~g~w~GVelD-ep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f  232 (243)
                      ...|+||+||+|..+ .++|+|||+|++++ ..++|+||||| ++.|||||+++|+|||+|+++||+||++++|+.. +|
T Consensus        15 ~~~l~vG~rV~V~~~~~~~G~vryvG~~~~-~~g~~~GVeldd~~~G~ndGt~~G~rYF~C~~~~G~Fv~~~~~~~~~~f   93 (104)
T d1ixda_          15 SHGLEVGSLAEVKENPPFYGVIRWIGQPPG-LNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRF   93 (104)
T ss_dssp             SSCCCTTSEEEECSSSCCCEEEEEEECCSS-SCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEECCTT
T ss_pred             CCCCccCCEEEECCCCCcEEEEEEEecCCC-CCCcEEEEEeCCCCCCCcCCEECCEEEEecCCCcEEEechHHCcccccc
Confidence            457999999999743 47899999999999 89999999996 5689999999999999999999999999999998 69


Q ss_pred             CCCCC
Q 026104          233 PERDP  237 (243)
Q Consensus       233 ~~~d~  237 (243)
                      |++++
T Consensus        94 ~~~~p   98 (104)
T d1ixda_          94 ASLQP   98 (104)
T ss_dssp             CCCCS
T ss_pred             cCCCC
Confidence            98764

>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-27  Score=196.52  Aligned_cols=77  Identities=42%  Similarity=0.843  Sum_probs=71.9

Q ss_pred             cCCCCCCCEEEEcCCCceeEEEEecccCCCCCccEEEEEEeCCCCccCcEECCEEeeecCCCceeeecCCCcccCCCCC
Q 026104          156 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPE  234 (243)
Q Consensus       156 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~w~GVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f~~  234 (243)
                      ...|+||+||.|. +.++|+|||||++++ ..|.|+|||||+|.|||||+++|+|||+|.++||+||++++|...++++
T Consensus        29 ~~~~~vGdrV~v~-g~~~G~vr~iG~~~~-~~G~wvGVELd~p~GKNdGsv~G~~YF~c~~~~G~Fv~~s~v~~~~~~~  105 (160)
T d2cp6a1          29 ERELKIGDRVLVG-GTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPS  105 (160)
T ss_dssp             SSCCCSSCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEECCCSS
T ss_pred             CCCCccCCEEEEC-CCCeEEEEEecccCC-CCCCEEEEEeCCCCCCCCCEECCEEeeecCCCceEEecHhHceEcCCCC
Confidence            3579999999996 678999999999999 9999999999999999999999999999999999999999998876654

>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-26  Score=175.12  Aligned_cols=79  Identities=27%  Similarity=0.425  Sum_probs=69.2

Q ss_pred             cCCCCCCCEEEEcC----CCceeEEEEecccCCCC--CccEEEEEEeC---CCCccCcEECCEEeeecCCCceeeecCCC
Q 026104          156 CSNITVGDRCEVDP----GAKRGVVKYVGQAESIA--PGFWVGIQYDE---PLGKHNGIVKGVRYFECPPLHGAMVRPDK  226 (243)
Q Consensus       156 ~~~~~vG~rv~v~~----~~~~G~vryvG~~~~~~--~g~w~GVelDe---p~GkndGs~~G~rYF~c~~~~G~Fv~~~~  226 (243)
                      .+.|.||+||+|..    ..++|+|||+|++++..  .|+|+|||||+   |.|||||+++|+|||+|+|+||+||++++
T Consensus         5 ~~~l~vGs~V~V~~~~g~~~~~G~vryvG~~~~~~~~~G~~~GVeldd~~~~~Gk~dGt~~G~rYF~C~~~~GiFv~~~k   84 (95)
T d1whla_           5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDK   84 (95)
T ss_dssp             CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGGG
T ss_pred             cCCCccCCEEEEEecCCCCceeEEEEEeccCCCCCCCCceEEEEEecCCcCCCCccCCEECCEEEEecCCCcEEEecHHH
Confidence            35799999999952    24679999999998832  48999999976   45899999999999999999999999999


Q ss_pred             cccCCCCC
Q 026104          227 VKVGDYPE  234 (243)
Q Consensus       227 v~~g~f~~  234 (243)
                      |++.++||
T Consensus        85 v~~~~~~p   92 (95)
T d1whla_          85 LELIESGP   92 (95)
T ss_dssp             EEECCSCS
T ss_pred             eEEcccCC
Confidence            99999887

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.3e-24  Score=162.64  Aligned_cols=92  Identities=28%  Similarity=0.452  Sum_probs=84.4

Q ss_pred             ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104            8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      +..++.|.|+|++ +++.+.+|+||+++|||.+||+||+.+|||||++|||+|++.++..+..+++|+++|++|++++|+
T Consensus         2 ~sgss~v~v~I~s-~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~   80 (95)
T d1v6ea_           2 SSGSSGVMVFISS-SLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGC   80 (95)
T ss_dssp             CSCCCCEEEEEEE-TTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTC
T ss_pred             CCCCCcEEEEEEE-CCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCC
Confidence            4567889999985 577788999999999999999999999999999999999988778888889999999999999999


Q ss_pred             EEEEeecCCCccc
Q 026104           88 RLHVIDLDPSSVT  100 (243)
Q Consensus        88 ~IhVvD~~p~s~~  100 (243)
                      +|||+|.+|.+.+
T Consensus        81 ~ihlvd~~p~~~s   93 (95)
T d1v6ea_          81 RIHVIDHSGSGPS   93 (95)
T ss_dssp             EEEEBCCSCCSSS
T ss_pred             EEEEEeCCCCCCC
Confidence            9999999997754

>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.1e-25  Score=164.30  Aligned_cols=78  Identities=17%  Similarity=0.368  Sum_probs=68.5

Q ss_pred             cCCCCCCCEEEEcC--CCceeEEEEecccCCC-CCccEEEEEEeCCCCccCcEECCEEeeecC-CCceeeecCCCcccCC
Q 026104          156 CSNITVGDRCEVDP--GAKRGVVKYVGQAESI-APGFWVGIQYDEPLGKHNGIVKGVRYFECP-PLHGAMVRPDKVKVGD  231 (243)
Q Consensus       156 ~~~~~vG~rv~v~~--~~~~G~vryvG~~~~~-~~g~w~GVelDep~GkndGs~~G~rYF~c~-~~~G~Fv~~~~v~~g~  231 (243)
                      ...|.||+||+|..  +.++|+|||+|.++.. ..|+|+|||||+|.|||||+++|+|||+|. ++||+||+++++...+
T Consensus         7 ~~~l~vg~RV~V~~~~~~~~GtVryiG~lp~~~~~g~wvGVElDep~Gk~dGt~~G~r~f~~~~~~~g~fv~~~~~~~~~   86 (92)
T d1whma_           7 GPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIPES   86 (92)
T ss_dssp             SCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGEEECC
T ss_pred             CCCceeCCEEEEecCCCceEEEEEEeCCCCCcCCCceEEEEEeCCCCCCCCCeECCEEEEEecCCCcEEEEehhhceEcC
Confidence            45699999999952  3689999999999863 478999999999999999999999999996 5899999999998774


Q ss_pred             -CC
Q 026104          232 -YP  233 (243)
Q Consensus       232 -f~  233 (243)
                       .|
T Consensus        87 s~p   89 (92)
T d1whma_          87 SGP   89 (92)
T ss_dssp             CCC
T ss_pred             CCC
Confidence             54

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.88  E-value=1.6e-22  Score=150.84  Aligned_cols=85  Identities=32%  Similarity=0.522  Sum_probs=78.4

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      +.+|+|.||+ +.+.+.+|+||++++||.+||+||+.+|||||++|+|+|++..+..+..|++|+++|++||++||++||
T Consensus         2 s~~~~l~it~-~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ih   80 (90)
T d1t0ya_           2 TEVYDLEITT-NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIH   80 (90)
T ss_dssp             CCEEEEEEEE-SSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred             CcEEEEEEEE-CCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEE
Confidence            4578999985 577778999999999999999999999999999999999988777777799999999999999999999


Q ss_pred             EeecCC
Q 026104           91 VIDLDP   96 (243)
Q Consensus        91 VvD~~p   96 (243)
                      |+|.+|
T Consensus        81 vvd~~~   86 (90)
T d1t0ya_          81 AVDVTG   86 (90)
T ss_dssp             EEECTT
T ss_pred             EEeCCC
Confidence            999986

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.6e-18  Score=130.48  Aligned_cols=91  Identities=26%  Similarity=0.279  Sum_probs=77.6

Q ss_pred             ccCCceEEEEEEeCC-CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCC-eeeecCCCCCccCCCCCCC
Q 026104            8 IEGDESVLLRVTHSN-LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT-KVAALTDNSRPLGFYSPLQ   85 (243)
Q Consensus         8 ~~~~~~v~v~It~s~-~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~-~~~~l~~d~~~L~~y~i~d   85 (243)
                      ..+.+.|+|.|++++ +.....++|+++++||.+||.+|+.++|||+++|+|+|.+.... ....|++|+++|++|+|++
T Consensus         4 ~ss~~~iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~d   83 (97)
T d1wjna_           4 GSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVEN   83 (97)
T ss_dssp             CSSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCT
T ss_pred             CcCCCeEEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCC
Confidence            345667999988765 44567899999999999999999999999999999999865433 2245889999999999999


Q ss_pred             CcEEEEeecCCCc
Q 026104           86 GYRLHVIDLDPSS   98 (243)
Q Consensus        86 g~~IhVvD~~p~s   98 (243)
                      |++|||.|++|.+
T Consensus        84 g~~I~V~~~~P~~   96 (97)
T d1wjna_          84 GDCLLVRWSGPSS   96 (97)
T ss_dssp             TCEEEEECCSSCC
T ss_pred             CCEEEEEeCCCCC
Confidence            9999999999975

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.4e-14  Score=102.25  Aligned_cols=73  Identities=21%  Similarity=0.204  Sum_probs=65.5

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      +..|+|+|+  ++.++...+.++++.||.+||++|+..+||||++|+|++   .|+.    ..|+++|++|+|++|++||
T Consensus         1 d~~~qi~Vk--~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~---~gk~----L~d~~tL~~y~I~~~sti~   71 (76)
T d1z2ma2           1 DEPLSILVR--NNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKP----LEDQLPLGEYGLKPLSTVF   71 (76)
T ss_dssp             CCCEEEEEE--CTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBGGGGTCCTTCEEE
T ss_pred             CCCEEEEEE--cCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEE---CCeE----CCCCCcHHHcCCCCCCEEE
Confidence            456899998  455678889999999999999999999999999999999   6876    3789999999999999999


Q ss_pred             Ee
Q 026104           91 VI   92 (243)
Q Consensus        91 Vv   92 (243)
                      ++
T Consensus        72 l~   73 (76)
T d1z2ma2          72 MN   73 (76)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=2.7e-14  Score=101.39  Aligned_cols=71  Identities=15%  Similarity=0.246  Sum_probs=62.9

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      .|+|+|++..   ...++.+++++||.+||++|+..+|+||++|+|+|   .|+.   | +|+.+|++|++++|++||++
T Consensus         1 si~I~Vk~~~---~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~~I~~g~~i~lV   70 (73)
T d2bwfa1           1 SLNIHIKSGQ---DKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKI---L-KDDQTVESYHIQDGHSVHLV   70 (73)
T ss_dssp             EEEEEEEETT---EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEE
T ss_pred             CEEEEEEeCC---eEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEE---CCeE---c-cCCCcHHHCCCCCCCEEEEE
Confidence            4789998653   24788999999999999999999999999999999   7886   3 68889999999999999998


Q ss_pred             e
Q 026104           93 D   93 (243)
Q Consensus        93 D   93 (243)
                      -
T Consensus        71 ~   71 (73)
T d2bwfa1          71 K   71 (73)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=7.6e-14  Score=100.43  Aligned_cols=72  Identities=14%  Similarity=0.227  Sum_probs=64.0

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      -+.|+|+..  +++...+.++++.||.+||++|+..+||||++|+|+|   .|+.   | +|+++|++|+|++|++||++
T Consensus         2 ~M~I~Vk~~--~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~---L-~d~~tL~~y~I~~~sti~lv   72 (78)
T d2zeqa1           2 GMIVFVRFN--SSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIF---AGKE---L-PNHLTVQNCDLEQQSIVHIV   72 (78)
T ss_dssp             CEEEEEESS--SSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---E-CTTCBGGGSSCCTTCEEEEE
T ss_pred             ceEEEEEcC--CCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEE---eeeE---c-CCCCCHHHcCCCCCCEEEEE
Confidence            378999844  4567788889999999999999999999999999999   7887   3 68899999999999999997


Q ss_pred             e
Q 026104           93 D   93 (243)
Q Consensus        93 D   93 (243)
                      -
T Consensus        73 ~   73 (78)
T d2zeqa1          73 Q   73 (78)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.5e-14  Score=102.30  Aligned_cols=80  Identities=15%  Similarity=0.117  Sum_probs=69.8

Q ss_pred             ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104            8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      ..+++.++|+|++  +.++...+.++++.||.+||++|+..+|||+++|||+|   .|+.   | +|+++|.+|+|++|+
T Consensus         2 ~~~s~~mqI~Vk~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~---~Gk~---L-~d~~tL~~y~I~~~s   72 (87)
T d1wh3a_           2 SSGSSGIQVFVKN--PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF---QGQV---L-QDWLGLGIYGIQDSD   72 (87)
T ss_dssp             CCCSSSEEEEEEE--TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE---TTEE---C-CSSSBHHHHTCCTTE
T ss_pred             CCCCCcEEEEEEC--CCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEe---eceE---c-CCCCcHHHcCCCCCC
Confidence            3567789999984  45567788899999999999999999999999999999   7886   3 689999999999999


Q ss_pred             EEEEeecCC
Q 026104           88 RLHVIDLDP   96 (243)
Q Consensus        88 ~IhVvD~~p   96 (243)
                      +||++-..+
T Consensus        73 tl~l~~r~~   81 (87)
T d1wh3a_          73 TLILSKKKG   81 (87)
T ss_dssp             EEEEEECSC
T ss_pred             EEEEEecCC
Confidence            999997543

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.47  E-value=8e-14  Score=98.80  Aligned_cols=70  Identities=17%  Similarity=0.292  Sum_probs=63.1

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      +.|+|+  +++++..++.++++.||.+||++|+..+|+||++|||++   .|+.   | +|+.+|++|++++|++||++
T Consensus         1 M~I~Vk--~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~---~Gk~---L-~d~~tL~~y~I~~~sti~lv   70 (73)
T d1bt0a_           1 MLIKVK--TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIY---AGKQ---L-ADDKTAKDYNIEGGSVLHLV   70 (73)
T ss_dssp             CEEEEE--CTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEE
T ss_pred             CEEEEE--eCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEE---CCeE---c-CCCCcHHHcCCCCCCEEEEE
Confidence            467888  466778899999999999999999999999999999999   7886   3 68899999999999999986

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=4.1e-14  Score=100.61  Aligned_cols=71  Identities=20%  Similarity=0.148  Sum_probs=64.0

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      +|+|+|+  +..++..++.++++.||.+||++|+..+|+||++|+|++   .|+.   | +|+.+|++|+|++|++||+.
T Consensus         1 mi~i~vk--~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~---~Gk~---L-~d~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_           1 MIEVVVN--DRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQK---GGSV---L-KDHISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             CEEEEEE--ETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEES---SSCE---E-CTTSBHHHHTCCTTEEEEEE
T ss_pred             CeEEEEE--CCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEE---EeEE---e-cccCcHHHcCCCCCCEEEEE
Confidence            4789998  456778999999999999999999999999999999999   6887   3 68899999999999999974

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.2e-13  Score=98.64  Aligned_cols=71  Identities=20%  Similarity=0.257  Sum_probs=63.0

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|++  +.++..++.++++.||.+||++|+..+|+||++|+|.|   .|+.    .+|+.+|++|++++|++||++-
T Consensus         1 MqI~Vk~--l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~---~Gk~----L~d~~tL~~y~i~~~s~I~L~~   71 (76)
T d1ogwa_           1 MQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL   71 (76)
T ss_dssp             CEEEEEE--TTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBGGGGTCCTTCEEEEEE
T ss_pred             CEEEEEc--CCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEE---CCeE----cCCCCCHHHcCCCCCCEEEEEE
Confidence            4788884  45568888999999999999999999999999999999   6876    3788999999999999999974

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.6e-13  Score=99.04  Aligned_cols=75  Identities=16%  Similarity=0.116  Sum_probs=67.0

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      -++|+|+.  ++++...+.++++.||.+||++|+..+|+|+++|||+|   .|+.   | +|+.+|++|+|++|++||++
T Consensus         3 e~qi~Vk~--~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~---~Gk~---L-~d~~tL~~y~I~~~sti~lv   73 (80)
T d1ttna1           3 ECQLRLRL--STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF---SGRP---L-TDKMKFEELKIPKDYVVQVI   73 (80)
T ss_dssp             SEEEEEEE--TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE---TTEE---C-CTTSHHHHCCCSSSCEEEEE
T ss_pred             eEEEEEEc--CCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEE---CceE---c-CCCCcHHHcCCCCCCEEEEE
Confidence            47899984  45678889999999999999999999999999999999   7876   3 68899999999999999999


Q ss_pred             ecCC
Q 026104           93 DLDP   96 (243)
Q Consensus        93 D~~p   96 (243)
                      -..|
T Consensus        74 i~~p   77 (80)
T d1ttna1          74 VSQP   77 (80)
T ss_dssp             CCCS
T ss_pred             ecCC
Confidence            7766

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.4e-13  Score=95.84  Aligned_cols=72  Identities=19%  Similarity=0.177  Sum_probs=62.2

Q ss_pred             EEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        15 ~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      +|+|+  .+.+...++.++++.||.+||++|+..+||||++|||+|.. .|+.    ..|+.+|++|||++|++||++=
T Consensus         2 ~l~Vk--~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~-~Gk~----L~D~~tL~~y~i~~g~~i~lv~   73 (76)
T d1z2ma1           2 DLTVK--MLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP-SGVA----LQDRVPLASQGLGPGSTVLLVV   73 (76)
T ss_dssp             EEEEE--ESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEET-TCCB----CCSSSCSGGGTCCTTCEEEEEE
T ss_pred             EEEEE--eCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcC-CCee----ccCCCcHHHcCCCCCCEEEEEE
Confidence            46777  35566788999999999999999999999999999999853 3665    3788999999999999999974

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.9e-13  Score=98.52  Aligned_cols=78  Identities=10%  Similarity=0.178  Sum_probs=66.9

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      .++.+|+|+|++..-   ..++.+++++||.+||++|+..+|+||+.|+|+|   .|+.   | +|+.+|++|++++|++
T Consensus         3 ~~~~~i~I~Vkt~~~---~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~Gk~---L-~D~~tL~~y~i~~gst   72 (84)
T d1yqba1           3 GSPHLIKVTVKTPKD---KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKI---L-KDPDSLAQCGVRDGLT   72 (84)
T ss_dssp             CCTTEEEEEEECSSC---EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBHHHHTCCTTCE
T ss_pred             CCCCEEEEEEEcCCC---cEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEE---eeee---c-cccCcHHHcCCCCCCE
Confidence            356689999997532   3578899999999999999999999999999999   6876   3 6889999999999999


Q ss_pred             EEEeecCC
Q 026104           89 LHVIDLDP   96 (243)
Q Consensus        89 IhVvD~~p   96 (243)
                      ||++--.+
T Consensus        73 i~lv~r~~   80 (84)
T d1yqba1          73 VHLVIKRQ   80 (84)
T ss_dssp             EEEEECCC
T ss_pred             EEEEECCC
Confidence            99986443

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.5e-13  Score=98.35  Aligned_cols=73  Identities=21%  Similarity=0.254  Sum_probs=63.1

Q ss_pred             EEEEEEeCCCCCceeEEEc-----CCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104           14 VLLRVTHSNLKSFSADVRF-----PLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~-----~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      |+|.|+|++-   ..++.+     +++.||++||++|+..||+||++|+|.+   .|+.   |.+|+.+|++|++++|++
T Consensus         2 i~i~V~~~~~---~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~---~G~~---L~~d~~tL~~~gi~~g~~   72 (81)
T d1wxva1           2 LTVTVTHSNE---KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF---KGKS---LKEMETPLSALGIQDGCR   72 (81)
T ss_dssp             EEEEEECSSS---EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEE---ECCSSSBHHHHTCCSSEE
T ss_pred             EEEEEEECCe---eEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeee---cCeE---eCcCCCChHHCCCCCCCE
Confidence            6788987653   566776     4689999999999999999999999999   6877   457889999999999999


Q ss_pred             EEEeecC
Q 026104           89 LHVIDLD   95 (243)
Q Consensus        89 IhVvD~~   95 (243)
                      |+|+-..
T Consensus        73 i~lv~~~   79 (81)
T d1wxva1          73 VMLIGKK   79 (81)
T ss_dssp             EEEESCC
T ss_pred             EEEEEec
Confidence            9999754

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.4e-13  Score=100.02  Aligned_cols=75  Identities=15%  Similarity=0.185  Sum_probs=65.6

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      .++..|+|+|+++.  . ..++.++++.||.+||++|+..+|+||++|+|+|   .|+.   | .|+.+|++|||++|++
T Consensus         6 ~~~~~i~v~Vk~~~--~-~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f---~Gk~---L-~d~~tL~~~gI~~gs~   75 (83)
T d1wx8a1           6 PSSRIIRVSVKTPQ--D-CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF---TGKI---L-RDQDILSQRGILDGST   75 (83)
T ss_dssp             CCSCEEEEEEECSS--S-EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE---TTEE---C-CTTSCHHHHTCCTTEE
T ss_pred             CCCCeEEEEEEcCC--C-cEEEEECCCChHHHHHHHHHHHhCCChhHEEEEE---Ehhc---c-ccCCcHHHcCCCCCCE
Confidence            46678999999643  2 3578999999999999999999999999999999   7876   3 6788999999999999


Q ss_pred             EEEee
Q 026104           89 LHVID   93 (243)
Q Consensus        89 IhVvD   93 (243)
                      ||++-
T Consensus        76 I~lv~   80 (83)
T d1wx8a1          76 VHVVV   80 (83)
T ss_dssp             EECCB
T ss_pred             EEEEE
Confidence            99974

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.2e-13  Score=99.93  Aligned_cols=71  Identities=14%  Similarity=0.258  Sum_probs=62.9

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      ..|+|+|++..  . ..++.++++.||.+||++|+..+|||+++|+|+|   .|+.   | .|+.+|.+|+|++|++||+
T Consensus        31 ~~i~V~Vk~~~--~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~---~Gk~---L-~D~~tL~~~~I~~g~~I~l  100 (103)
T d1j8ca_          31 KIIKVTVKTPK--E-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF---AGKI---L-KDQDTLIQHGIHDGLTVHL  100 (103)
T ss_dssp             CCEEEEEECSS--C-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE---TTEE---E-STTSCGGGTTCSSSEEEEE
T ss_pred             CeEEEEEECCC--c-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeee---eeec---c-cCCCcHHHcCCCCCCEEEE
Confidence            36999998643  2 4678899999999999999999999999999999   6876   3 6888999999999999999


Q ss_pred             e
Q 026104           92 I   92 (243)
Q Consensus        92 v   92 (243)
                      +
T Consensus       101 v  101 (103)
T d1j8ca_         101 V  101 (103)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.8e-13  Score=97.08  Aligned_cols=73  Identities=18%  Similarity=0.243  Sum_probs=63.6

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++|+|+  .+.++..++.++++.||.+||++|+..+|+|+++|||+|   .|+.    +.|+++|++|++ ++++||++-
T Consensus         1 m~I~Vk--~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~---~Gk~----L~d~~tL~dy~i-~~~ti~lv~   70 (73)
T d1wx9a1           1 LEVLVK--TLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRV----LQDDKKLQEYNV-GGKVIHLVE   70 (73)
T ss_dssp             EEEEEE--CTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEE---TTEE----CCSSSBHHHHTC-TTEEEBCCC
T ss_pred             CEEEEE--cCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEE---CCeE----ccCCCCHHHhCC-CCCEEEEEe
Confidence            578898  355668889999999999999999999999999999999   7886    368899999999 589999986


Q ss_pred             cCC
Q 026104           94 LDP   96 (243)
Q Consensus        94 ~~p   96 (243)
                      ..|
T Consensus        71 r~P   73 (73)
T d1wx9a1          71 RAP   73 (73)
T ss_dssp             SSC
T ss_pred             cCC
Confidence            554

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.9e-13  Score=102.01  Aligned_cols=75  Identities=16%  Similarity=0.151  Sum_probs=66.3

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      .+..+|+|+|+  +..++...+.+.++.||.+||++|+..+|+|++.|+|++   .|+.    +.|+.+|++|+|++|++
T Consensus        24 ~~~~~i~V~V~--~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~----L~D~~tL~dygI~~Gst   94 (100)
T d1uh6a_          24 GAATMIEVVCN--DRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK---WYTI----FKDHVSLGDYEIHDGMN   94 (100)
T ss_dssp             SCCCEEEEEEE--CSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCSSCBHHHHTCCTTEE
T ss_pred             CCCceEEEEEE--CCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEE---Eeec----ccCcCCHHHcCCCCCCE
Confidence            34557899997  456778889999999999999999999999999999999   6875    48999999999999999


Q ss_pred             EEEe
Q 026104           89 LHVI   92 (243)
Q Consensus        89 IhVv   92 (243)
                      ||+.
T Consensus        95 I~L~   98 (100)
T d1uh6a_          95 LELY   98 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9984

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1e-12  Score=93.99  Aligned_cols=70  Identities=11%  Similarity=0.130  Sum_probs=60.4

Q ss_pred             EEEEEEeCCCCCc-eeEE-EcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           14 VLLRVTHSNLKSF-SADV-RFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        14 v~v~It~s~~~~~-~~e~-r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      ++|+|++  +.++ ...+ .++++.||++||++|+..+||||++|||+|   .|+.    .+|+++|++|++++|++||+
T Consensus         1 M~I~Vkt--l~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~y~I~~~sti~l   71 (76)
T d2faza1           1 MWIQVRT--MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY---RGKQ----MEDGHTLFDYEVRLNDTIQL   71 (76)
T ss_dssp             EEEEEEE--TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTCBTTTTTCCTTCEEEE
T ss_pred             CEEEEEe--CCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEE---eeEe----ccCCCcHHHcCCCCCCEEEE
Confidence            4688874  4543 4555 489999999999999999999999999999   7887    37889999999999999998


Q ss_pred             e
Q 026104           92 I   92 (243)
Q Consensus        92 v   92 (243)
                      +
T Consensus        72 v   72 (76)
T d2faza1          72 L   72 (76)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2.9e-13  Score=99.65  Aligned_cols=81  Identities=14%  Similarity=0.089  Sum_probs=66.6

Q ss_pred             ccCCceEEEEEEeCCCCCceeEE-EcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCC
Q 026104            8 IEGDESVLLRVTHSNLKSFSADV-RFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG   86 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~-r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg   86 (243)
                      ..+++.|+|+|+++.-   ..++ .++++.||.+||++|+..||+||++|||++..-.|+.    .+|+.+|.+|++++|
T Consensus         2 ~s~s~~~~i~Vk~~~~---~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~----L~D~~tL~~~~i~~g   74 (90)
T d1v5ta_           2 SSGSSGLPIIVKWGGQ---EYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKP----AENDVKLGALKLKPN   74 (90)
T ss_dssp             CCCCCSCCEEEEETTE---EEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEE----CCTTSBHHHHTCCTT
T ss_pred             CCCCCcEEEEEEECCe---EEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcC----CCCcCcHHHcCCCCC
Confidence            3567789999997532   4566 6899999999999999999999999999852115765    367899999999999


Q ss_pred             cEEEEeecC
Q 026104           87 YRLHVIDLD   95 (243)
Q Consensus        87 ~~IhVvD~~   95 (243)
                      ++||++-+.
T Consensus        75 ~~i~lv~s~   83 (90)
T d1v5ta_          75 TKIMMMGTR   83 (90)
T ss_dssp             EEEEEECCC
T ss_pred             CEEEEEeeC
Confidence            999999653

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.4e-13  Score=95.13  Aligned_cols=72  Identities=10%  Similarity=0.164  Sum_probs=60.6

Q ss_pred             EEEEEEeCCCCCceeEE-EcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           14 VLLRVTHSNLKSFSADV-RFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~-r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      ++|+|+..+.. +.... .++++.||.+||++|+..+|||+++|||+|   .|+.    .+|+.+|++|+|++|++||++
T Consensus         1 M~I~Vk~l~G~-~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~---~Gk~----L~d~~tL~~y~I~~~s~i~lv   72 (76)
T d1wy8a1           1 MWIQVRTIDGS-KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY---RGKQ----LENGYTLFDYDVGLNDIIQLL   72 (76)
T ss_dssp             EEEEEEETTCS-CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE---TTEE----CCSSSBHHHHTCCTTCEEEEE
T ss_pred             CEEEEEeCCCC-ceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEE---EeeE----ecCCCCHHHcCCCCCCEEEEE
Confidence            46888743322 34444 689999999999999999999999999999   7886    378899999999999999998


Q ss_pred             e
Q 026104           93 D   93 (243)
Q Consensus        93 D   93 (243)
                      -
T Consensus        73 ~   73 (76)
T d1wy8a1          73 V   73 (76)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=5.9e-13  Score=100.56  Aligned_cols=80  Identities=15%  Similarity=0.236  Sum_probs=67.2

Q ss_pred             CceEEEEE--EeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104           11 DESVLLRV--THSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus        11 ~~~v~v~I--t~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      ++-+.|+|  .+.+++.....+.+++++||.+||++|+..+|||+++|+|+|   +|+.   |.+|.++|++|||++|.+
T Consensus         5 ~~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~---~Gk~---L~dd~~tL~~~gI~~g~~   78 (102)
T d1v5oa_           5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY---MEQL---LTDDHCSLGSYGLKDGDM   78 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE---TTEE---ECCSSSBHHHHTCCTTEE
T ss_pred             cCCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEe---CCeE---eecccCCHHHcCCCCCCE
Confidence            33445555  444666678889999999999999999999999999999999   7887   457888999999999999


Q ss_pred             EEEeecCC
Q 026104           89 LHVIDLDP   96 (243)
Q Consensus        89 IhVvD~~p   96 (243)
                      ||++-..+
T Consensus        79 i~l~~r~~   86 (102)
T d1v5oa_          79 VVLLQKDN   86 (102)
T ss_dssp             EEECBCCC
T ss_pred             EEEEECCC
Confidence            99997654

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.4e-13  Score=95.02  Aligned_cols=71  Identities=18%  Similarity=0.233  Sum_probs=63.3

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhC---CCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCG---TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tG---ipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      .|+|+|+  ++.++..++.++++.||.+||++|+...|   +||++|||+|   .|+.   | +|+++|++|+|++|++|
T Consensus         2 ~~~i~vk--~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~---~Gk~---L-~D~~tL~~y~I~~~s~i   72 (77)
T d1oqya4           2 AVTITLK--TLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKI---L-SDDVPIRDYRIDEKNFV   72 (77)
T ss_dssp             CCCEEEE--ETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES---SSSE---E-CSSSBTTTTCCCTTSCE
T ss_pred             cEEEEEE--CCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEE---CCcC---c-cCCCcHHHcCCCCCCEE
Confidence            4788898  45667889999999999999999999998   9999999999   6887   3 68899999999999999


Q ss_pred             EEe
Q 026104           90 HVI   92 (243)
Q Consensus        90 hVv   92 (243)
                      +|+
T Consensus        73 ~~~   75 (77)
T d1oqya4          73 VVM   75 (77)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            885

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1e-12  Score=98.05  Aligned_cols=77  Identities=12%  Similarity=0.121  Sum_probs=65.5

Q ss_pred             ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104            8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      ..+++.++|.|+++.  .+...+.++++.||.+||++|+..+||||++|||+|   .|+.   | +|+ +|++|+|++|+
T Consensus         2 ~s~s~~~~I~VK~~~--~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~---~Gk~---L-~d~-tL~~~gi~~g~   71 (96)
T d1wgga_           2 SSGSSGYSVTVKWGK--EKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV---KGGT---L-KDD-DWGNIKMKNGM   71 (96)
T ss_dssp             CSCCCEEEEEEEETT--EEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE---TTEE---C-CSS-CCCSCCCCSSC
T ss_pred             CCCCCceEEEEEeCC--CCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEee---cCcc---c-CCC-cHHHCCCCCCC
Confidence            356778999999753  345678899999999999999999999999999999   6876   3 343 69999999999


Q ss_pred             EEEEeec
Q 026104           88 RLHVIDL   94 (243)
Q Consensus        88 ~IhVvD~   94 (243)
                      +|||+=+
T Consensus        72 ~i~lv~t   78 (96)
T d1wgga_          72 TVLMMGS   78 (96)
T ss_dssp             EEECCCC
T ss_pred             EEEEEee
Confidence            9999854

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=4.8e-12  Score=94.31  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=67.8

Q ss_pred             ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104            8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      +.+++.|+|+|++.  ......+++++++||.+||.+|+   .+++++|||+|   .|+.   |.+|.++|.+|+|.+|+
T Consensus         2 ~~~~s~m~i~vK~l--~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~---~Gk~---L~dd~~tL~~y~i~~g~   70 (95)
T d1wiaa_           2 SSGSSGINVRLKFL--NDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIY---QGRL---LQDPARTLSSLNITNNC   70 (95)
T ss_dssp             CCCCCSEEEEEEET--TTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEE---TTEE---CCCSSCBTTTTTCCTTE
T ss_pred             CCCCCcEEEEEEcC--CCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEE---CCEE---cccCCCCHHHcCCCCCC
Confidence            45677899999954  45677889999999999999986   56889999999   6887   55788999999999999


Q ss_pred             EEEEeecCCCc
Q 026104           88 RLHVIDLDPSS   98 (243)
Q Consensus        88 ~IhVvD~~p~s   98 (243)
                      +|||+-..|..
T Consensus        71 ~v~l~~~~~~~   81 (95)
T d1wiaa_          71 VIHCHRSPPGA   81 (95)
T ss_dssp             EEEEECCCCCC
T ss_pred             EEEEEEcCCCC
Confidence            99999876644

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.9e-12  Score=94.23  Aligned_cols=76  Identities=16%  Similarity=0.200  Sum_probs=65.3

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhC---CCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCG---TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tG---ipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      ++|+|++  +.++..++.++++.||.+||++|+..+|   +|++.|||+|   .|+.   | +|+++|++|+|.+|++||
T Consensus         1 M~I~vk~--~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~---~Gk~---L-~d~~tL~~y~I~~~s~i~   71 (95)
T d1uela_           1 MQVTLKT--LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY---AGKI---L-NDDTALKEYKIDEKNFVV   71 (95)
T ss_dssp             CEEEEEE--TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE---TTEE---C-CTTSBGGGGTCCSSSEEE
T ss_pred             CEEEEEe--CCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEE---CCeE---c-cCCCcHHHcCCCCCCEEE
Confidence            4688874  5566788899999999999999999987   8999999999   7886   3 678999999999999999


Q ss_pred             EeecCCCc
Q 026104           91 VIDLDPSS   98 (243)
Q Consensus        91 VvD~~p~s   98 (243)
                      ++-..|..
T Consensus        72 lv~~~~~~   79 (95)
T d1uela_          72 VMVTKPKA   79 (95)
T ss_dssp             EEESSCCC
T ss_pred             EEECCCCC
Confidence            98766543

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=8.6e-13  Score=98.24  Aligned_cols=76  Identities=18%  Similarity=0.242  Sum_probs=65.2

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcE
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR   88 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~   88 (243)
                      .....|.|.|.++.   +..+++++++.||.+||++|+..||||+++|+|++   .|+     ..|+.+|.+|+|++|++
T Consensus        13 ~~~~~i~v~V~~~~---k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~---~g~-----l~D~~tL~~~~I~~gs~   81 (95)
T d1v86a_          13 VGKELVDLKIIWNK---TKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY---KGL-----VPEDKTLREIKVTSGAK   81 (95)
T ss_dssp             CCCCCEEEEEEETT---EEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS---SSB-----CCSSSBHHHHCCCTTEE
T ss_pred             CCccEEEEEEEECC---EEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEe---ccc-----ccCCCcHHHCCCCCCCE
Confidence            34457999998643   47889999999999999999999999999999987   453     26788999999999999


Q ss_pred             EEEeecC
Q 026104           89 LHVIDLD   95 (243)
Q Consensus        89 IhVvD~~   95 (243)
                      |||+-+.
T Consensus        82 i~lvgs~   88 (95)
T d1v86a_          82 IMVVGST   88 (95)
T ss_dssp             EEECCSS
T ss_pred             EEEEecC
Confidence            9999653

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.9e-12  Score=94.70  Aligned_cols=64  Identities=20%  Similarity=0.309  Sum_probs=57.6

Q ss_pred             CCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        23 ~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      +++....+.+++++||.+||++|+..+|+|+++|+|+|   .|+.   | .|+.+|++|+|++|++||++-
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~---~Gk~---L-~D~~tL~dY~I~~gsti~l~~   82 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY---EGIF---I-KDSNSLAYYNMANGAVIHLAL   82 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEE---TTEE---E-CTTSBHHHHTCCTTEEEEEEE
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEe---CCcC---c-CCCCCHHHcCCCCCCEEEEEE
Confidence            45566788999999999999999999999999999999   6876   3 688999999999999999974

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4e-12  Score=95.54  Aligned_cols=80  Identities=13%  Similarity=0.138  Sum_probs=68.7

Q ss_pred             ceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        12 ~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      ..++|+|.......+...+.+.+++||.+||.+|+..+|+||++|+|+|   .|+.    ++|+.+|.+|+|+++++|||
T Consensus        16 ati~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~---~Gk~----L~d~~tL~~~gI~~~s~i~v   88 (100)
T d1wjua_          16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVI---NKKQ----LQLGKTLEEQGVAHNVKAMV   88 (100)
T ss_dssp             EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEE---TTEE----CCTTSBHHHHTCCSSEEEEE
T ss_pred             EEEEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEE---cccC----cCCCcCHHHcCCCCCCEEEE
Confidence            3577777555666778889999999999999999999999999999999   7886    37899999999999999999


Q ss_pred             eecCCCc
Q 026104           92 IDLDPSS   98 (243)
Q Consensus        92 vD~~p~s   98 (243)
                      +-...++
T Consensus        89 i~~~~~~   95 (100)
T d1wjua_          89 LELKQSS   95 (100)
T ss_dssp             ECCCCCC
T ss_pred             EEcCCCC
Confidence            9765433

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.28  E-value=4.3e-12  Score=97.14  Aligned_cols=78  Identities=14%  Similarity=0.095  Sum_probs=63.6

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCC-CCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPL-QMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~-~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      .....++|.|. +...+....+.+.+ +.||.+||+||+..+|||+++|||+|   .|+.    ..|+.+|++|+|++|+
T Consensus        25 ~g~~ti~V~v~-~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~ynI~~gs   96 (111)
T d1we6a_          25 PGPATIRVSKP-NENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG---KAGF----LKDNMSLAHYNVGAGE   96 (111)
T ss_dssp             CSCEEEEECCT-TCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC---SSSB----CCTTSBTTTTTCSSSC
T ss_pred             CCCEEEEEEcc-cCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEE---eeEE----ccccCCHHHcCCCCCC
Confidence            34445666664 22335678888876 99999999999999999999999999   6876    3688999999999999


Q ss_pred             EEEEeec
Q 026104           88 RLHVIDL   94 (243)
Q Consensus        88 ~IhVvD~   94 (243)
                      +||++-.
T Consensus        97 ti~L~lr  103 (111)
T d1we6a_          97 ILTLSLR  103 (111)
T ss_dssp             EEEEECS
T ss_pred             EEEEEee
Confidence            9999864

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=6.9e-12  Score=96.72  Aligned_cols=76  Identities=14%  Similarity=0.135  Sum_probs=66.1

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHH--------HhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCC
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKL--------WRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF   80 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KL--------e~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~   80 (243)
                      .++..|+|+|.  .++++..++.|++++||.+||++|        +...|+||++|||+|   .|+.    +.|+.+|++
T Consensus        12 ~~~~~i~i~v~--~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy---~Gk~----L~D~~tL~~   82 (116)
T d1wgha_          12 VPADMINLRLI--LVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRF----LHGNVTLGA   82 (116)
T ss_dssp             CCSSSEEEEEE--CSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE---TTEE----ECSSCBTTT
T ss_pred             CCCCeEEEEEE--EcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEE---CCEE----ecCCCCHHH
Confidence            45678999998  456778999999999999999999        578999999999999   7886    378999999


Q ss_pred             CCCCCCcE--EEEee
Q 026104           81 YSPLQGYR--LHVID   93 (243)
Q Consensus        81 y~i~dg~~--IhVvD   93 (243)
                      |+|.+|.+  ||++=
T Consensus        83 ~~i~~g~~~~lhlv~   97 (116)
T d1wgha_          83 LKLPFGKTTVMHLVA   97 (116)
T ss_dssp             TTCCSSCEEEEEEEE
T ss_pred             cCCCCCCEEEEEEEe
Confidence            99999965  77764

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=8.9e-12  Score=92.34  Aligned_cols=80  Identities=19%  Similarity=0.118  Sum_probs=66.7

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhC--CCCCceEEEEEcCCCCeeeecCCCCCccCCCCC--C
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCG--TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP--L   84 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tG--ipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i--~   84 (243)
                      .+++.|+|+|++.+......++.+++++||.+||++|+...|  +|+++|||+|   .|+.    +.|+.+|++|..  .
T Consensus         3 sgs~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy---~Gk~----L~D~~~L~d~~~~~~   75 (93)
T d1wgda_           3 SGSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY---SGKL----LLDHQCLRDLLPKQE   75 (93)
T ss_dssp             CCSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE---TTEE----CCSSSCHHHHSCSSS
T ss_pred             CCCCcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEE---CCeE----ccCCCCHHHhCcccC
Confidence            455679999997766655688899999999999999999965  9999999999   6886    489999999964  5


Q ss_pred             CCcEEEEeecCC
Q 026104           85 QGYRLHVIDLDP   96 (243)
Q Consensus        85 dg~~IhVvD~~p   96 (243)
                      ++.+||++ +++
T Consensus        76 ~~~viHLV-~~~   86 (93)
T d1wgda_          76 KRHVLHLV-CNV   86 (93)
T ss_dssp             CSEEEEEE-CCC
T ss_pred             CCCEEEEE-ecC
Confidence            66799998 443

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1e-12  Score=99.62  Aligned_cols=78  Identities=18%  Similarity=0.183  Sum_probs=67.6

Q ss_pred             ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceE---------------EEEEcCCCCeeeecC
Q 026104            8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMS---------------LELYDDTNTKVAALT   72 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qr---------------L~l~~~~g~~~~~l~   72 (243)
                      +.+++.|+|+|+.  +.+....+.++++.||.+||++|+..+|||+++||               |+|   .|+.   |.
T Consensus         2 ssgss~M~v~Vk~--~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~---~G~~---L~   73 (105)
T d1v2ya_           2 SSGSSGMTVRVCK--MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS---AGEK---LT   73 (105)
T ss_dssp             CCCCCSEEEEEEC--SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES---SSCE---EC
T ss_pred             CCCCCcEEEEEEe--CCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEE---CCEE---Cc
Confidence            4567789999984  45567788889999999999999999999999998               888   6877   45


Q ss_pred             CCCCccCCCCCCCCcEEEEee
Q 026104           73 DNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        73 ~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      ++..+|.+|+|++|++||++-
T Consensus        74 d~~~tL~~~gI~~g~~l~lv~   94 (105)
T d1v2ya_          74 EDRKKLRDYGIRNRDEVSFIK   94 (105)
T ss_dssp             CSSSBHHHHTCCSSEEEEEEE
T ss_pred             ccCCCHHHcCCCCCCEEEEEE
Confidence            677899999999999999986

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.12  E-value=1.7e-10  Score=86.69  Aligned_cols=77  Identities=17%  Similarity=0.248  Sum_probs=63.6

Q ss_pred             CceEEEEEEeCCCCCce-eEEEcCCCCCHHHHHHHHHhH-----hCCC--CCceEEEEEcCCCCeeeecCCCCCccCCCC
Q 026104           11 DESVLLRVTHSNLKSFS-ADVRFPLQMSVESVKDKLWRK-----CGTS--VNSMSLELYDDTNTKVAALTDNSRPLGFYS   82 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~-~e~r~~~~~TV~~LK~KLe~~-----tGip--p~~qrL~l~~~~g~~~~~l~~d~~~L~~y~   82 (243)
                      ...|.|.|+..+  ++. ...+|+++.||.+||++|+..     .|||  |++|||+|   .|+.    ++|+++|++|+
T Consensus         5 ~~~i~I~~r~~~--G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf---~Gk~----L~D~~tL~dy~   75 (101)
T d1se9a_           5 HNQLEIKFRLTD--GSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS---AGKV----LENSKTVKDYR   75 (101)
T ss_dssp             CCCEEEEEEETT--SCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE---TTEE----CCTTSBGGGGS
T ss_pred             cceEEEEEEeCC--CCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEE---CCeE----ecCCCCHHHcC
Confidence            446788887543  333 479999999999999999875     8998  88999999   7986    37899999999


Q ss_pred             CCCCc------EEEEeecCC
Q 026104           83 PLQGY------RLHVIDLDP   96 (243)
Q Consensus        83 i~dg~------~IhVvD~~p   96 (243)
                      +..|.      ++|++=-.|
T Consensus        76 i~~g~~~~~~~tmHlVvrpp   95 (101)
T d1se9a_          76 SPVSNLAGAVTTMHVIIQAP   95 (101)
T ss_dssp             CCTTSCTTCCEEEEEEECCC
T ss_pred             CCCCCcCCCceEEEEEeCCC
Confidence            99997      999997444

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=98.92  E-value=2.8e-09  Score=76.00  Aligned_cols=72  Identities=6%  Similarity=0.108  Sum_probs=63.2

Q ss_pred             CceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEE
Q 026104           11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH   90 (243)
Q Consensus        11 ~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~Ih   90 (243)
                      +..|+|.|++++   .....++.++.++..||+.+....|+++++|+|+|   +|+.+    +++.|+.+|++++|.+||
T Consensus         2 ~~~I~ikv~~~~---~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f---~G~~l----~~~~T~~~~~i~dgd~I~   71 (79)
T d1euvb_           2 ETHINLKVSDGS---SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIE   71 (79)
T ss_dssp             CSEEEEEEESSS---CEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEE
T ss_pred             CcEEEEEECCCC---eEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEE---CCEEe----CCCCCHHHCCCCCCCEEE
Confidence            346888887533   36778999999999999999999999999999999   78873    788899999999999999


Q ss_pred             Ee
Q 026104           91 VI   92 (243)
Q Consensus        91 Vv   92 (243)
                      |+
T Consensus        72 v~   73 (79)
T d1euvb_          72 AH   73 (79)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2e-09  Score=80.93  Aligned_cols=53  Identities=13%  Similarity=-0.008  Sum_probs=47.3

Q ss_pred             eeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCC
Q 026104           27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG   86 (243)
Q Consensus        27 ~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg   86 (243)
                      ..-+.+.++.||.+||++|+.++|||+++|||++   .|+.   | +|+++|++|||.+.
T Consensus        12 Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~TL~dYgI~~~   64 (103)
T d2c9wb1          12 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYK---DDQL---L-DDGKTLGECGFTSQ   64 (103)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBHHHHTCCTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEE---CCEE---c-CCCCCHHHcCCCcc
Confidence            4567889999999999999999999999999999   7876   3 78999999999554

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=1.1e-08  Score=75.66  Aligned_cols=54  Identities=20%  Similarity=0.249  Sum_probs=46.9

Q ss_pred             CCCCCHHHHHHHHHhHh--CCC-CCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEee
Q 026104           33 PLQMSVESVKDKLWRKC--GTS-VNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID   93 (243)
Q Consensus        33 ~~~~TV~~LK~KLe~~t--Gip-p~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD   93 (243)
                      +.++||.+||++|..+.  ++| |++|||+|   .|+.    .+|+.+|.+|+|++|++||++-
T Consensus        35 ~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy---~Gk~----L~D~~tL~~y~I~~gstihLV~   91 (94)
T d1x1ma1          35 LGGYSISFLKQLIAGKLQESVPDPELIDLIY---CGRK----LKDDQTLDFYGIQPGSTVHVLR   91 (94)
T ss_dssp             CCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE---TTEE----CCTTCBHHHHTCCTTCEEEEEE
T ss_pred             CCccCHHHHHHHHHHHcccCCCChhheEEEE---CCeE----ECCCccHHHcCCCCCCEEEEEE
Confidence            44889999999998885  444 69999999   7987    3789999999999999999985

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.2e-07  Score=66.94  Aligned_cols=71  Identities=11%  Similarity=0.194  Sum_probs=62.9

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      .|+|.|++.  .+...+.++.++.|+..|++......|+++++++|+|   +|+.+    .++.|+.+|+++||.+|+|+
T Consensus         2 ~I~ikv~~~--dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~f---dG~~l----~~~~T~~~l~~edgD~Idv~   72 (77)
T d2uyzb1           2 YIKLKVIGQ--DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQRI----ADNHTPKELGMEEEDVIEVY   72 (77)
T ss_dssp             EEEEEEECT--TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCHHHHTCCTTEEEEEE
T ss_pred             EEEEEEECC--CCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEE---CCEEC----CCCCCHHHcCCCCCCEEEEE
Confidence            478888854  3457789999999999999999999999999999999   78873    56789999999999999997

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.99  E-value=3.6e-06  Score=61.21  Aligned_cols=60  Identities=10%  Similarity=0.139  Sum_probs=48.2

Q ss_pred             EEcC-CCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCe-----------eeecCCCCCccCCCCCCCCcEEEEe
Q 026104           30 VRFP-LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTK-----------VAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        30 ~r~~-~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~-----------~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      +.++ ++.|+++||.+|+...+||.+.|+|++.   -..           ...|.++..+|.++++.+|+.||+.
T Consensus        14 v~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~---~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsivyL~   85 (94)
T d1wf9a1          14 VSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN---RNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLA   85 (94)
T ss_dssp             EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS---GGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECC
T ss_pred             EEecCCCCcHHHHHHHHHHHhCCCcccceeecC---hhhhccCCccccchhhhccCCccCHHHcCccCceEEEEE
Confidence            3354 4799999999999999999999999872   111           1125678889999999999999985

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00071  Score=46.32  Aligned_cols=69  Identities=7%  Similarity=0.155  Sum_probs=59.9

Q ss_pred             EEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEE
Q 026104           14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV   91 (243)
Q Consensus        14 v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhV   91 (243)
                      |+|.|..++  +.....++.++.++..|........|++++.+++.|   +|..+    ....|..++++++|..|-|
T Consensus         2 I~lkv~~~~--g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~f---dG~~i----~~~~Tp~~l~med~D~Idv   70 (72)
T d1wm3a_           2 INLKVAGQD--GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDV   70 (72)
T ss_dssp             EEEEEECTT--SCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE---TTEEC----CTTCCTTTTTCCTTEEEEE
T ss_pred             EEEEEECCC--CCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEE---CCEEc----CCCCCHHHcCCCCCCEEEE
Confidence            778887544  457889999999999999999999999999999999   78774    5667999999999999876

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.048  Score=37.44  Aligned_cols=79  Identities=15%  Similarity=0.061  Sum_probs=59.3

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      ++.+++|.|...+  +....+||.++.||..|.+-+... |.++..-.|.-  .-.+......+.+++|.+.|+.+...|
T Consensus         2 ~e~~~~i~iRlPd--G~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~--~~Pr~~l~~~d~~~TL~e~gL~p~~~L   76 (82)
T d1h8ca_           2 AEPVSKLRIRTPS--GEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLS--TFPRRDVTQLDPNKSLLEVKLFPQETL   76 (82)
T ss_dssp             CCCCEEEEEECTT--SCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEE--TTTTEETTTCCTTSBHHHHCCCSEEEE
T ss_pred             CCCcEEEEEECCC--CCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEe--cCcccccccccccCCHHHCCCCCCCEE
Confidence            4567888898544  457889999999999999999874 77777655543  223333334567889999999999999


Q ss_pred             EEee
Q 026104           90 HVID   93 (243)
Q Consensus        90 hVvD   93 (243)
                      +|..
T Consensus        77 ~vq~   80 (82)
T d1h8ca_          77 FLEA   80 (82)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9864

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.76  E-value=0.031  Score=39.04  Aligned_cols=56  Identities=7%  Similarity=0.026  Sum_probs=44.2

Q ss_pred             ccCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCee
Q 026104            8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKV   68 (243)
Q Consensus         8 ~~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~   68 (243)
                      +.+...|+|.+....-   ..-+++++++|..+|+++|...+++.  ..+|.+.|.+|..+
T Consensus         7 ~~~~~~ikVKv~~~~D---~~~~~l~~~it~~dL~~kI~~rf~~~--~~~lkY~Dedgd~v   62 (85)
T d1ip9a_           7 TSGLKTTKIKFYYKDD---IFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLFDGSGE   62 (85)
T ss_dssp             CCCCCCEEEEECBTTC---CEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCSSSCCS
T ss_pred             CCCCCCEEEEEEECCc---EEEEEeCCCCCHHHHHHHHHHHhCCC--ceEEEEEcCCCCEE
Confidence            3445568888864432   56788999999999999999999864  58999998888765

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.21  E-value=0.091  Score=36.87  Aligned_cols=83  Identities=14%  Similarity=0.061  Sum_probs=59.1

Q ss_pred             CCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEE
Q 026104           10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL   89 (243)
Q Consensus        10 ~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~I   89 (243)
                      ....++|.|.-.  .+....+||.++.||..|..-+... +..+..=+|.--.+ .+.+  ..+.+++|.+.|+.+.+.|
T Consensus        13 ~~~~~~i~iRlP--dG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~P-r~~~--~~d~~~TL~e~gl~p~~~L   86 (96)
T d2cr5a1          13 AEEVVTVALRCP--NGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFP-RRAL--EVEGGSSLEDIGITVDTVL   86 (96)
T ss_dssp             CSSEEEEEEECT--TSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSS-CCBC--CCCSSCBHHHHTCSSCEEE
T ss_pred             CCCeEEEEEECC--CCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCC-ceec--CccCCCcHHHCCCCCCCEE
Confidence            446789999844  3457899999999999999988765 44444444443111 1222  2355789999999999999


Q ss_pred             EEeecCCCc
Q 026104           90 HVIDLDPSS   98 (243)
Q Consensus        90 hVvD~~p~s   98 (243)
                      +|.+.++++
T Consensus        87 ~v~~~d~~~   95 (96)
T d2cr5a1          87 NVEEKEQSS   95 (96)
T ss_dssp             EEEECCCCS
T ss_pred             EEecCCCCC
Confidence            999877643

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.21  Score=36.80  Aligned_cols=81  Identities=15%  Similarity=0.096  Sum_probs=59.2

Q ss_pred             eEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEe
Q 026104           13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI   92 (243)
Q Consensus        13 ~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVv   92 (243)
                      ..+|.|+-.  .+....+||..+.||.+|..-+... +..+..-+|..  .--+......+.+++|.+.++.+...|+|.
T Consensus        43 ~~~l~iRlP--dG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~--~fPr~~l~~~d~~~TL~e~gL~P~~~L~ve  117 (124)
T d1wj4a_          43 KAQLMLRYP--DGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLT--NFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             EEEEEEECT--TSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEEC--SSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             ceEEEEECC--CCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEee--cccccccccccccCcHHHcCCCCCCEEEEE
Confidence            577888733  3457899999999999999999875 45555555443  222222222356899999999999999999


Q ss_pred             ecCCCc
Q 026104           93 DLDPSS   98 (243)
Q Consensus        93 D~~p~s   98 (243)
                      ...|.|
T Consensus       118 e~~~~~  123 (124)
T d1wj4a_         118 ESGPSS  123 (124)
T ss_dssp             ECCSTT
T ss_pred             ecCCCC
Confidence            988765

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.63  E-value=0.28  Score=33.97  Aligned_cols=46  Identities=11%  Similarity=0.198  Sum_probs=39.1

Q ss_pred             ceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeec
Q 026104           26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAAL   71 (243)
Q Consensus        26 ~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l   71 (243)
                      +..-+++++....++|.++|..+...+|+..+|+++..++.....+
T Consensus        14 fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~~~~~~e~v~l   59 (82)
T d1oeya_          14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPL   59 (82)
T ss_dssp             SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEEC
T ss_pred             EEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEeccCCCCceecc
Confidence            4678999999999999999999999999999999976555544334

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.63  E-value=1.7  Score=29.67  Aligned_cols=73  Identities=12%  Similarity=0.090  Sum_probs=50.9

Q ss_pred             cCCceEEEEEEeCCCCCceeEEEcCCCCCHHHHHHHHHhHh-CCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCc
Q 026104            9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKC-GTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY   87 (243)
Q Consensus         9 ~~~~~v~v~It~s~~~~~~~e~r~~~~~TV~~LK~KLe~~t-Gipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~   87 (243)
                      .....++|.|.-.+.  ....++|+++.||.+|.+-+...- +.+...-.|.-  .--+..  +.+.+.+|.+.|+.+.+
T Consensus        10 e~~p~t~I~iRlPdG--~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t--~~Prr~--l~d~~~TL~e~gL~~s~   83 (89)
T d1i42a_          10 EAEPTTNIQIRLADG--GRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMT--TFPNKE--LADENQTLKEANLLNAV   83 (89)
T ss_dssp             TTSCCEEEEEEETTT--CCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEE--TTTTEE--CCCCSSCSGGGTTCCSE
T ss_pred             CCCCcEEEEEEcCCC--CEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEec--CCCCcc--cCCCcCcHHHCCCcCce
Confidence            334467777875553  478899999999999999998763 55544445443  222332  45788999999998654

>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.25  E-value=1.4  Score=30.87  Aligned_cols=69  Identities=20%  Similarity=0.344  Sum_probs=41.4

Q ss_pred             EEEcCCCCCHHHHHHHHHhHhCCCCCceEE--EEEcCCCCeee-----ec-----CCCCCccCCCCCCCCcEEEEeecC-
Q 026104           29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSL--ELYDDTNTKVA-----AL-----TDNSRPLGFYSPLQGYRLHVIDLD-   95 (243)
Q Consensus        29 e~r~~~~~TV~~LK~KLe~~tGipp~~qrL--~l~~~~g~~~~-----~l-----~~d~~~L~~y~i~dg~~IhVvD~~-   95 (243)
                      .+.+++++|+.+|=+.|...-..--..=-|  .+ ++.++.+.     .|     .+=.++|.+.|+++|.+|+|.|.. 
T Consensus         4 ~l~~~~~~TL~~li~~L~e~p~~qlk~Psltt~~-~g~~ktLYm~~pp~Lee~Tr~NL~k~L~eLgl~dG~ei~VtD~t~   82 (92)
T d1y8xb1           4 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATL-EGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTT   82 (92)
T ss_dssp             CEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEE-TTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTTC
T ss_pred             eEEcCCCCcHHHHHHHHhhChHhhccCCceeeec-CCCccEEEecCcHHHHHHhhhccccCHHHhCCcCCCEEEEecCCC
Confidence            356799999999988887652222222122  22 11111211     01     112579999999999999999953 


Q ss_pred             CCc
Q 026104           96 PSS   98 (243)
Q Consensus        96 p~s   98 (243)
                      |.+
T Consensus        83 p~~   85 (92)
T d1y8xb1          83 PQT   85 (92)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            444

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.06  E-value=2.1  Score=28.84  Aligned_cols=64  Identities=14%  Similarity=0.144  Sum_probs=54.2

Q ss_pred             CCceeEEEcCCCCCHHHHHHHHHhHhCCCCCceEEEEEcCCCCeeeecCCCCCccCCCCCCCCcEEEEeec
Q 026104           24 KSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL   94 (243)
Q Consensus        24 ~~~~~e~r~~~~~TV~~LK~KLe~~tGipp~~qrL~l~~~~g~~~~~l~~d~~~L~~y~i~dg~~IhVvD~   94 (243)
                      .++...+++.|++|+.++=+.--.+.|..++.=.|.+   .++.+    +-+.++.+.|+.+|+.+-++-.
T Consensus         9 ~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh---~~k~l----dLsl~~R~sgLpnnakLELv~~   72 (76)
T d2al3a1           9 NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKF---QRTVL----DLSLQWRFANLPNNAKLEMVPV   72 (76)
T ss_dssp             TSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEE---TTEEE----SSSCBHHHHCCCSSCEEEEECS
T ss_pred             CCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeee---CCEEc----CccceeeecCCCCCCEEEEEEc
Confidence            4467889999999999999999999999999989888   45542    5677888899999999888754