Citrus Sinensis ID: 026219

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MGASHLCLHYCYYQSAAGFAAFHRTAKALISKPSSTFLCRRRHHHRCLYRNTASAASAACNTSKEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF
Secondary Structure (PSIPRED)
ccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHcccccccccccccccccHHHHcccccccEEEEEEccccHHHHHHHHHccccccEEEEEEEHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHccccccccEEEEEcccccccccccccccccHHHHHHHHHHcccccEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHcccccccccEcccHHcccHHHHHHHHHHccccccccccccccEEEEHHcccccccccccccccccHHHHHccccccEEEEEcccHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHcccccccEEEEEcccccHHHHHcccEEccHHHHHHHHHHcccccEEEc
Coil and Loop (DISEMBL)
mgashlclhycyyqsaagFAAFHRTAKAliskpsstflcrrrhhhrclyrntaSAASAAcntskeirsTDLVALEFAelnlpvsnkitgeLGHARIrqhvnplsssftvpapipdwsevyknptlplmvdigsgSGRFLIWLARrnpdsgnylGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLvssypgplmlvsilcpdphfkkkhhkrrvvqKPLVDSIIDylmpggkvyf
Flexible Loop (DISEMBL)
MGASHLCLHYCYYQSAAGFAAFHRTAKALISKPSSTFLCRRRHHHRCLYRNTASAASAACNTSKEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLArrnpdsgnyLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPhfkkkhhkrrvvqkplvdsiidylmpggkvyf
Low Complexity Region (SEG)
MGASHLCLHYCYYQSAAGFAAFHRTAKALISKPSSTFLCrrrhhhrCLYRNTasaasaaCNTSKEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFkkkhhkrrvvQKPLVDSIIDYLMPGGKVYF
Disordered region (IsUnstruct)
****HLCLHYCYYQSAAGFAAFHRTAKALISKPSSTFLCRRRHHHRCLYRNTASAASAACNTSKEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG****
Disordered Region (DISOPRED)
***SHLCLHYCYYQSAAGFAA************************************************************************ARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF
Disordered Region (DISEMBL)
MGASHLCLHYCYYQSAAGFAAFHRTAKALISKPSSTFLCRRRHHHRCLYRNT**********SKEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHF********VVQKPLVDSIIDYLMPGGKVYF
Disordered Region (DISPRO)
**ASHLCLHYCYYQSAAGFAAFHRTAKALISKPSSTFLCRRRHHHRCLYRNTAS*ASAACNTS*EIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGASHLCLHYCYYQSAAGFAAFHRTAKALISKPSSTFLCRRRHHHRCLYRNTASAASAACNTSKEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q2JJQ0	239	tRNA (guanine-N(7)-)-meth	yes	no	0.609	0.615	0.536	9e-38
Q2JRH1	236	tRNA (guanine-N(7)-)-meth	yes	no	0.597	0.610	0.530	1e-36
Q117P8	220	tRNA (guanine-N(7)-)-meth	yes	no	0.609	0.668	0.476	1e-32
Q3M3Q5	215	tRNA (guanine-N(7)-)-meth	yes	no	0.622	0.697	0.473	1e-30
Q8YVX4	219	tRNA (guanine-N(7)-)-meth	yes	no	0.622	0.684	0.460	2e-30
P73161	211	tRNA (guanine-N(7)-)-meth	N/A	no	0.614	0.701	0.463	2e-30
Q5N2X5	213	tRNA (guanine-N(7)-)-meth	yes	no	0.622	0.704	0.460	3e-30
P72546	213	tRNA (guanine-N(7)-)-meth	yes	no	0.622	0.704	0.460	3e-30
B0JUK5	211	tRNA (guanine-N(7)-)-meth	yes	no	0.622	0.710	0.453	2e-29
Q8DHH6	213	tRNA (guanine-N(7)-)-meth	yes	no	0.593	0.671	0.452	2e-28

>sp|Q2JJQ0|TRMB_SYNJB tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=trmB PE=3 SV=1

 Score =  157 bits (396), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 102/151 (67%), Gaps = 4/151 (2%)

Query: 91  LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
           LGH R+RQHVNPL + +  PAP P W  VY+    P  +DIG+GSGRFL+ +A+  PD  
Sbjct: 34  LGH-RVRQHVNPLQAQYQQPAPPPHWERVYRRLGQPFHLDIGTGSGRFLLRIAQEQPD-W 91

Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPH 210
           N+LG+EIRQ LV+RA  W  EL L N+HFLFAN +VS + L +  PG L  V+IL PDP 
Sbjct: 92  NFLGVEIRQALVERANAWRDELGLDNVHFLFANINVSLRHLFA--PGDLSRVTILFPDPW 149

Query: 211 FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
           FKK+HHKRR+VQ  LV  +   L PG  V+ 
Sbjct: 150 FKKRHHKRRIVQPQLVADLALLLRPGSPVFL 180

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 3

>sp|Q2JRH1|TRMB_SYNJA tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain JA-3-3Ab) GN=trmB PE=3 SV=1

 Score =  152 bits (385), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/147 (53%), Positives = 98/147 (66%), Gaps = 3/147 (2%)

Query: 95  RIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLG 154
           R+RQHVNPL + +  P P P W  VY+    PL +DIGSGSGRFL+ +A+  PD  N+LG
Sbjct: 34  RLRQHVNPLQAQYQQPTPPPHWERVYRRLGQPLHLDIGSGSGRFLLRMAQEQPD-WNFLG 92

Query: 155 LEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKK 214
           +EIRQ LV+RA  W  EL L N+HFLFAN +VS + L +  PG L  V+I  PDP FKK+
Sbjct: 93  VEIRQPLVERANAWRDELGLDNVHFLFANINVSLRHLFA--PGDLSRVTIQFPDPWFKKR 150

Query: 215 HHKRRVVQKPLVDSIIDYLMPGGKVYF 241
           HHKRR+VQ  LV  +   L PG  V+ 
Sbjct: 151 HHKRRIVQPRLVADLALLLQPGSPVFL 177

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q117P8|TRMB_TRIEI tRNA (guanine-N(7)-)-methyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=trmB PE=3 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 99/149 (66%), Gaps = 2/149 (1%)

Query: 94  ARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYL 153
            RIRQHVNPL+S +     IP++S++Y +   PL +DIG   GRFL  +A+  P+  N+L
Sbjct: 4   VRIRQHVNPLASKYQQSVTIPNFSDIYADIKKPLYLDIGCARGRFLWQMAQVEPE-WNFL 62

Query: 154 GLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDPHFK 212
           GLEIR+ LV  A  W  E  L+N+H+LF NA++S  ++  S+P G L  VSIL PDP FK
Sbjct: 63  GLEIREPLVIEANNWRDEKGLNNLHYLFCNANISLGKIFESFPKGILKKVSILFPDPWFK 122

Query: 213 KKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
           ++H  RRVVQ  LV+ + +YL  GG+V+ 
Sbjct: 123 RRHQTRRVVQPKLVEDLANYLTVGGEVFL 151

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q3M3Q5|TRMB_ANAVT tRNA (guanine-N(7)-)-methyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trmB PE=3 SV=1

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 97/152 (63%), Gaps = 2/152 (1%)

Query: 91  LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
           L   R+RQHVNPL+  +  PA   +W +VY +P  PL +DIG   GRF++ +A+  P   
Sbjct: 4   LPFVRVRQHVNPLAQKYLTPANPLEWEKVYSSPHQPLHLDIGCARGRFVLQMAQVEP-RW 62

Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDP 209
           N+LGLEIR+ LV  A  +  +L LSN+H+L+ NA+ S + L+SS P G L  V+I  PDP
Sbjct: 63  NFLGLEIREPLVIEANQFRSQLGLSNLHYLYCNANNSLQPLLSSLPTGILQRVTIQFPDP 122

Query: 210 HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
            FK +H KRRVVQ  LV  I +YL  GG V+ 
Sbjct: 123 WFKTRHAKRRVVQPELVQDIANYLAVGGVVFL 154

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q8YVX4|TRMB_NOSS1 tRNA (guanine-N(7)-)-methyltransferase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trmB PE=3 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 96/152 (63%), Gaps = 2/152 (1%)

Query: 91  LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
           L   R+RQHVNPL+  +  PA   +W + Y  P  PL +DIG   GRF++ +A+  P+  
Sbjct: 8   LPFVRVRQHVNPLAQKYLTPANPLEWEKAYSTPHQPLHLDIGCARGRFVLQMAQVEPN-W 66

Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDP 209
           N+LGLEIR+ LV  A  +  +L L+N+H+L+ NA+ S + L+SS P G L  V+I  PDP
Sbjct: 67  NFLGLEIRESLVIEANQFRSQLGLTNLHYLYCNANNSLQPLLSSLPTGILQRVTIQFPDP 126

Query: 210 HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
            FK +H KRRVVQ  LV  I +YL  GG V+ 
Sbjct: 127 WFKTRHAKRRVVQPELVQDIANYLAVGGVVFL 158

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|P73161|TRMB_SYNY3 tRNA (guanine-N(7)-)-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trmB PE=3 SV=2

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 94/149 (63%), Gaps = 1/149 (0%)

Query: 91  LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
           +   RIRQHVNPLS  +      PDW+ VY +   PL +DIG   GRF + +A+++PD  
Sbjct: 1   MARVRIRQHVNPLSEKYRQVLACPDWATVYDDVQRPLHLDIGCARGRFPLKMAQQHPD-W 59

Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPH 210
           N+LG+EIRQ LV  A      L L N+H+LF N +V  ++  S++P  L  VSI  PDP 
Sbjct: 60  NFLGVEIRQPLVLEANETGDRLGLKNLHYLFGNINVEPEKFFSAFPPTLQRVSIQFPDPW 119

Query: 211 FKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239
           FK++H+KRRV Q  LV +I + L PGG+V
Sbjct: 120 FKQRHNKRRVAQPELVTAIANALPPGGEV 148

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q5N2X5|TRMB_SYNP6 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=trmB PE=3 SV=1

 Score =  131 bits (330), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 94/152 (61%), Gaps = 2/152 (1%)

Query: 91  LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
           +   R+RQHVNPLS  F V    PDW +VY +   PL +DIG   GRFL+ +A   P+  
Sbjct: 1   MARVRVRQHVNPLSQKFQVVTTWPDWQQVYADCDRPLHLDIGCARGRFLLAMATAQPE-W 59

Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDP 209
           NYLGLEIR+ LV  A    +E  L+N+++ F+NA++  + L+ S P G L  VSI  PDP
Sbjct: 60  NYLGLEIREPLVDEANAIARERELTNLYYHFSNANLDLEPLLRSLPTGILQRVSIQFPDP 119

Query: 210 HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
            FKK+H KRRVVQ  LV ++   L  G +V+ 
Sbjct: 120 WFKKRHQKRRVVQPELVQALATALPAGAEVFL 151

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|P72546|TRMB_SYNE7 tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=trmB PE=3 SV=2

 Score =  131 bits (330), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 94/152 (61%), Gaps = 2/152 (1%)

Query: 91  LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
           +   R+RQHVNPLS  F V    PDW +VY +   PL +DIG   GRFL+ +A   P+  
Sbjct: 1   MARVRVRQHVNPLSQKFQVVTTWPDWQQVYADCDRPLHLDIGCARGRFLLAMATAQPE-W 59

Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDP 209
           NYLGLEIR+ LV  A    +E  L+N+++ F+NA++  + L+ S P G L  VSI  PDP
Sbjct: 60  NYLGLEIREPLVDEANAIARERELTNLYYHFSNANLDLEPLLRSLPTGILQRVSIQFPDP 119

Query: 210 HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
            FKK+H KRRVVQ  LV ++   L  G +V+ 
Sbjct: 120 WFKKRHQKRRVVQPELVQALATALPAGAEVFL 151

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B0JUK5|TRMB_MICAN tRNA (guanine-N(7)-)-methyltransferase OS=Microcystis aeruginosa (strain NIES-843) GN=trmB PE=3 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 98/152 (64%), Gaps = 2/152 (1%)

Query: 91  LGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSG 150
           +   R+RQHVNPLS  +  P   PDW++VY++ T PL +DIG   G+FL+ +A+  P+  
Sbjct: 1   MAKVRVRQHVNPLSHKYRHPIAPPDWNQVYQDMTQPLHLDIGCARGKFLLQMAQVEPEI- 59

Query: 151 NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG-PLMLVSILCPDP 209
           N+LG+EIRQ LV  A    + L LSN+ F+F N +V+ + L+ S P   L  VSI  PDP
Sbjct: 60  NFLGIEIRQPLVIEANQERERLGLSNLAFVFGNMNVAPEILLQSLPADKLFWVSIQFPDP 119

Query: 210 HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
            FK++H KRRVVQ  LV ++  Y++ GG V+ 
Sbjct: 120 WFKQRHSKRRVVQPELVIALAKYMVAGGWVFL 151

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q8DHH6|TRMB_THEEB tRNA (guanine-N(7)-)-methyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=trmB PE=3 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 90/146 (61%), Gaps = 3/146 (2%)

Query: 94  ARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYL 153
            R+RQHVNPLS  F    P+PDWS +Y+ P+ PL +DIG   G FL+ +A   P+  N+L
Sbjct: 8   VRVRQHVNPLSQKFQQDIPVPDWSRIYEQPSQPLHLDIGCARGTFLLEMAALYPEQ-NFL 66

Query: 154 GLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKK 213
           GLEIR  LV  A        L N+H+L+ NA+V   +++     PL  V+I  PDP FK+
Sbjct: 67  GLEIRYPLVVAANERRDRQQLRNLHYLWGNANVHLSKILGGL--PLHTVTIQFPDPWFKR 124

Query: 214 KHHKRRVVQKPLVDSIIDYLMPGGKV 239
           +HHKRRVV   LV ++ + L  GG+V
Sbjct: 125 RHHKRRVVTPELVATLAELLPAGGRV 150

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
224123998	249	predicted protein [Populus trichocarpa]	0.734	0.710	0.810	3e-82
296090185	309	unnamed protein product [Vitis vinifera]	0.804	0.627	0.683	6e-78
449432289	310	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.958	0.745	0.597	3e-77
297811917	305	methyltransferase [Arabidopsis lyrata su	0.771	0.609	0.718	5e-76
18418385	312	tRNA (guanine-N-7) methyltransferase [Ar	0.726	0.560	0.728	2e-72
9759043	280	unnamed protein product [Arabidopsis tha	0.726	0.625	0.728	3e-72
356520713	306	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.705	0.555	0.712	3e-69
356503164	303	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.709	0.564	0.691	2e-68
255565974	219	tRNA (guanine-n(7)-)-methyltransferase,	0.659	0.726	0.727	4e-65
357130222	300	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.717	0.576	0.657	6e-60

>gi|224123998|ref|XP_002319216.1| predicted protein [Populus trichocarpa] gi|222857592|gb|EEE95139.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 145/179 (81%), Positives = 167/179 (93%), Gaps = 2/179 (1%)

Query: 63  SKEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKN 122
           +KEIRS DLVALE+A+LNL   +KI+GELGH RIRQHVNPLSSSF+VPA +PDW EV+++
Sbjct: 3   AKEIRSPDLVALEYADLNL--FDKISGELGHVRIRQHVNPLSSSFSVPAQVPDWKEVFRD 60

Query: 123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA 182
           PTLPLMVDIGSG GRFLIWLA+RNPDSGNYLGLEIRQKLVKRAEFWV+ELAL+N+HFLFA
Sbjct: 61  PTLPLMVDIGSGIGRFLIWLAKRNPDSGNYLGLEIRQKLVKRAEFWVKELALTNMHFLFA 120

Query: 183 NASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
           NA++SF+QLV SYPGPLMLVSILCPDPHFKK+HHKRRVVQK LVD+II +L+PGGKV+ 
Sbjct: 121 NATISFRQLVLSYPGPLMLVSILCPDPHFKKRHHKRRVVQKTLVDNIISHLVPGGKVFL 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090185|emb|CBI40004.3| unnamed protein product [Vitis vinifera]

 Score =  296 bits (758), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 136/199 (68%), Positives = 172/199 (86%), Gaps = 5/199 (2%)

Query: 43  HHHRCLYRNTASAASAACNTSKEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNP 102
           HHHR    +  ++ +A  +T+K++ S +LVALE+A+LNL   N ++ E+GH RIRQHVNP
Sbjct: 45  HHHR----HFCNSPTAVASTAKQLTSPELVALEYADLNLNYDN-VSQEVGHVRIRQHVNP 99

Query: 103 LSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLV 162
            + SF++PAP+P+W +V+K+ TLPLMVDIGSGSGRFL+WLA+RNPDS NYLGLEIRQKL 
Sbjct: 100 FAPSFSIPAPVPNWCQVFKDSTLPLMVDIGSGSGRFLMWLAKRNPDSQNYLGLEIRQKLA 159

Query: 163 KRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQ 222
           KRAEFWV+EL+L NIHF+FANA++SFK+LVS+YPGPLMLVS+LCPDPHFKK+HHKRRVVQ
Sbjct: 160 KRAEFWVKELSLHNIHFMFANATISFKELVSAYPGPLMLVSLLCPDPHFKKRHHKRRVVQ 219

Query: 223 KPLVDSIIDYLMPGGKVYF 241
           KPLVDSI+  LMPGG+V+ 
Sbjct: 220 KPLVDSIVKNLMPGGQVFI 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432289|ref|XP_004133932.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Cucumis sativus] gi|449480027|ref|XP_004155779.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Cucumis sativus]

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 144/241 (59%), Positives = 184/241 (76%), Gaps = 10/241 (4%)

Query: 3   ASHLCLHYCYYQSAAGFAAFHRTAKALISKPSSTFLCRRRHHHRCLYRNTA--SAASAAC 60
           AS LCLH          AA    A ++++  +           R   RN +  S +SA  
Sbjct: 2   ASSLCLHLQASSHLRCIAAAKPAAPSMVATANKIL------SKRPFLRNFSLPSGSSADL 55

Query: 61  NTSKEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVY 120
              + +RS++LVALE+A+LNL  S+K+  +LGH RIRQHVNPLSSSF+VP P P+W EV+
Sbjct: 56  CERQPLRSSELVALEYADLNL--SHKMVEDLGHVRIRQHVNPLSSSFSVPTPAPNWDEVF 113

Query: 121 KNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFL 180
           ++PTLPLMVDIGSGSGRFL+WLA+R+P+S N+LGLEIRQKLVKRA  WV+EL  SN+HF+
Sbjct: 114 RDPTLPLMVDIGSGSGRFLLWLAKRHPESRNFLGLEIRQKLVKRAGIWVKELGFSNVHFM 173

Query: 181 FANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240
           FANA++SFKQ++SSYPGPL+LVSILCPDPHFKK+HHKRRV+QKPLV+SI+D LMPGG+V+
Sbjct: 174 FANATISFKQIISSYPGPLILVSILCPDPHFKKRHHKRRVLQKPLVESIVDSLMPGGQVF 233

Query: 241 F 241
            
Sbjct: 234 I 234

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811917|ref|XP_002873842.1| methyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297319679|gb|EFH50101.1| methyltransferase [Arabidopsis lyrata subsp. lyrata]

 Score =  290 bits (741), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 135/188 (71%), Positives = 162/188 (86%), Gaps = 2/188 (1%)

Query: 53  ASAASAACNTSKEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAP 112
           ASA+++ C   KE+RS +LV LE+AELNL  ++KI+ E+GH RIRQHVNPLSSSF+ PAP
Sbjct: 51  ASASTSVCVDLKELRSNELVDLEYAELNL--NHKISQEVGHVRIRQHVNPLSSSFSKPAP 108

Query: 113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL 172
           +P W EVYK+P+LPLMVDIGSGSGRFL+WLA +N +S NYLGLEIRQKLVKRA FWV EL
Sbjct: 109 VPVWDEVYKDPSLPLMVDIGSGSGRFLLWLANKNAESRNYLGLEIRQKLVKRANFWVNEL 168

Query: 173 ALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDY 232
            LSN+HF+FANA VSF+QL+SSYPGPL +VSILCPDPHFKK+H KRRVVQKPLV+SI+  
Sbjct: 169 GLSNVHFIFANAMVSFEQLISSYPGPLEIVSILCPDPHFKKRHQKRRVVQKPLVNSILQN 228

Query: 233 LMPGGKVY 240
           L PG K++
Sbjct: 229 LKPGRKIF 236

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418385|ref|NP_568355.1| tRNA (guanine-N-7) methyltransferase [Arabidopsis thaliana] gi|21618118|gb|AAM67168.1| unknown [Arabidopsis thaliana] gi|28058819|gb|AAO29957.1| putative protein [Arabidopsis thaliana] gi|30984522|gb|AAP42724.1| At5g17660 [Arabidopsis thaliana] gi|332005070|gb|AED92453.1| tRNA (guanine-N-7) methyltransferase [Arabidopsis thaliana]

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/177 (72%), Positives = 154/177 (87%), Gaps = 2/177 (1%)

Query: 64  KEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNP 123
           K++RS +LV LE+AELNL  ++KI+ E+GH RIRQHVNPLSSSF+ PAP+P W EVYK+P
Sbjct: 66  KDLRSNELVELEYAELNL--NHKISEEVGHVRIRQHVNPLSSSFSKPAPVPVWDEVYKDP 123

Query: 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN 183
           +LPLMVDIGSGSGRFL+W A +N +S NYLGLEIRQKLVKRA FWV EL LSN+HF+FAN
Sbjct: 124 SLPLMVDIGSGSGRFLLWQANKNVESRNYLGLEIRQKLVKRANFWVNELGLSNVHFIFAN 183

Query: 184 ASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240
           A VSF+ L+SSYPGPL +VSILCPDPHFKK+H KRRVVQKPLV+SI+  L PGGK++
Sbjct: 184 AMVSFEHLISSYPGPLEIVSILCPDPHFKKRHQKRRVVQKPLVNSILQNLKPGGKIF 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759043|dbj|BAB09565.1| unnamed protein product [Arabidopsis thaliana]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/177 (72%), Positives = 154/177 (87%), Gaps = 2/177 (1%)

Query: 64  KEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNP 123
           K++RS +LV LE+AELNL  ++KI+ E+GH RIRQHVNPLSSSF+ PAP+P W EVYK+P
Sbjct: 34  KDLRSNELVELEYAELNL--NHKISEEVGHVRIRQHVNPLSSSFSKPAPVPVWDEVYKDP 91

Query: 124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN 183
           +LPLMVDIGSGSGRFL+W A +N +S NYLGLEIRQKLVKRA FWV EL LSN+HF+FAN
Sbjct: 92  SLPLMVDIGSGSGRFLLWQANKNVESRNYLGLEIRQKLVKRANFWVNELGLSNVHFIFAN 151

Query: 184 ASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240
           A VSF+ L+SSYPGPL +VSILCPDPHFKK+H KRRVVQKPLV+SI+  L PGGK++
Sbjct: 152 AMVSFEHLISSYPGPLEIVSILCPDPHFKKRHQKRRVVQKPLVNSILQNLKPGGKIF 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520713|ref|XP_003529005.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Glycine max]

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/174 (71%), Positives = 151/174 (86%), Gaps = 4/174 (2%)

Query: 67  RSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLP 126
           RS+ LVALE+A+LNL  S+ +  +LGH RIRQHVNPLSSS +VPA +P+W+  + +PTLP
Sbjct: 62  RSSQLVALEYADLNL--SHNL--DLGHVRIRQHVNPLSSSLSVPAQVPEWNHAFADPTLP 117

Query: 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186
           LMVDIG GSGRFL+WLA+R P   N+LGLEIRQK+VKRAE W ++LAL N+HFLFANA++
Sbjct: 118 LMVDIGCGSGRFLMWLAKRTPKERNFLGLEIRQKIVKRAESWAKDLALDNVHFLFANATI 177

Query: 187 SFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY 240
           SFKQLV SYPGPL LVSILCPDPHFKK+HHKRRV+QKPLVD+I+D LMPGG+V+
Sbjct: 178 SFKQLVESYPGPLALVSILCPDPHFKKRHHKRRVLQKPLVDAIVDNLMPGGQVF 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503164|ref|XP_003520381.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Glycine max]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/175 (69%), Positives = 148/175 (84%), Gaps = 4/175 (2%)

Query: 67  RSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLP 126
           +S+ LVALE+A+LNL        +LGH RIRQHVNPLSSSF+VPA +PDW+  + +PTLP
Sbjct: 63  QSSQLVALEYADLNL----SYNLDLGHVRIRQHVNPLSSSFSVPAQVPDWNHAFADPTLP 118

Query: 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186
           LMVDIG GSGRFL+WLA+R P   N+LGLEIR+++VKRAE W ++LAL NI FLFANA++
Sbjct: 119 LMVDIGCGSGRFLMWLAKRTPKERNFLGLEIRERIVKRAESWAKDLALDNILFLFANATI 178

Query: 187 SFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
           SFKQLV SYPGPL+LVS+LCPDPHFKKKHHKRRV+QKPLV +I+D LMPGG+V+ 
Sbjct: 179 SFKQLVESYPGPLVLVSVLCPDPHFKKKHHKRRVLQKPLVGAIVDNLMPGGQVFI 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565974|ref|XP_002523975.1| tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis] gi|223536702|gb|EEF38343.1| tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 120/165 (72%), Positives = 142/165 (86%), Gaps = 6/165 (3%)

Query: 43  HHHRCLYRNTASAASAACNTSKEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNP 102
           ++  C Y NT +A    C  SKE+RSTDLVALE+AELNL  ++K +GELGH RIRQHVNP
Sbjct: 46  YYQNCCYSNTVNA----CIGSKELRSTDLVALEYAELNL--TDKTSGELGHVRIRQHVNP 99

Query: 103 LSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLV 162
           LSSSF+VPA +P+W EV+K+PTLPLMVDIGSGSGRFLIWLAR+NPDSGNYLG+EIRQKLV
Sbjct: 100 LSSSFSVPALVPNWKEVFKDPTLPLMVDIGSGSGRFLIWLARKNPDSGNYLGIEIRQKLV 159

Query: 163 KRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCP 207
           +RAE WV+++AL NI+FLFANA+VSF+QLV  YPGPLM VSIL P
Sbjct: 160 RRAELWVKQMALGNIYFLFANATVSFRQLVLEYPGPLMFVSILTP 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357130222|ref|XP_003566749.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Brachypodium distachyon]

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 115/175 (65%), Positives = 136/175 (77%), Gaps = 2/175 (1%)

Query: 67  RSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLP 126
           RSTD V  E+A+LNL       G   H RIRQHVNPLS+SF  P   PDW EV+++P LP
Sbjct: 33  RSTDAVDREYADLNLRPLYPNRGH--HLRIRQHVNPLSASFVEPTGPPDWKEVFEDPLLP 90

Query: 127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV 186
           LMVDIG GSGRFL+WLA+ + +  NYLGLEIRQKLV+R +FWV EL L N++F+FANA+V
Sbjct: 91  LMVDIGCGSGRFLVWLAKNSRERRNYLGLEIRQKLVERTQFWVTELGLRNVYFMFANATV 150

Query: 187 SFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
           SF+Q+VSSYPGPL+LVSILCPDPHFKKKHHKRRV+Q  LVDSI   L  GG+V  
Sbjct: 151 SFEQIVSSYPGPLLLVSILCPDPHFKKKHHKRRVLQTQLVDSITKNLCLGGRVLL 205

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2175971	312	AT5G17660 [Arabidopsis thalian	0.742	0.573	0.674	2e-63
DICTYBASE|DDB_G0276491	278	mettl1 "tRNA (guanine-N7-)-met	0.601	0.521	0.301	4.7e-07
UNIPROTKB|Q74FT5	209	trmB "tRNA (guanine-N(7)-)-met	0.580	0.669	0.283	6.8e-07
TIGR_CMR|GSU_0521	209	GSU_0521 "methyltransferase, p	0.580	0.669	0.283	6.8e-07
TAIR|locus:2149443	251	AT5G24840 [Arabidopsis thalian	0.601	0.577	0.302	6.2e-05
FB|FBgn0025629	256	CG4045 [Drosophila melanogaste	0.647	0.609	0.312	0.0002
WB|WBGene00012205	256	W02B12.10 [Caenorhabditis eleg	0.688	0.648	0.282	0.00026
UNIPROTKB|Q23126	256	W02B12.10 "tRNA (guanine-N(7)-	0.688	0.648	0.282	0.00026
TIGR_CMR|VC_0453	239	VC_0453 "tRNA (guanine-N(7)-)-	0.506	0.510	0.238	0.00029
UNIPROTKB|Q9UBP6	276	METTL1 "tRNA (guanine-N(7)-)-m	0.443	0.387	0.330	0.00062

TAIR|locus:2175971 AT5G17660 [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 122/181 (67%), Positives = 146/181 (80%)

Query:    60 CNTSKEIRSTDLVALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPIPDWSEV 119
             C   K++RS +LV LE+AELNL  ++KI+ E+GH RIRQHVNPLSSSF+ PAP+P W EV
Sbjct:    62 CVDFKDLRSNELVELEYAELNL--NHKISEEVGHVRIRQHVNPLSSSFSKPAPVPVWDEV 119

Query:   120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHF 179
             YK+P+LPLMVDIGSGSGRFL+W A +N +S NYLGLEIRQKLVKRA FWV EL LSN+HF
Sbjct:   120 YKDPSLPLMVDIGSGSGRFLLWQANKNVESRNYLGLEIRQKLVKRANFWVNELGLSNVHF 179

Query:   180 LFANASVSFKQLVSSYPGPLMLVSILCPDPHFXXXXXXXXXXQKPLVDSIIDYLMPGGKV 239
             +FANA VSF+ L+SSYPGPL +VSILCPDPHF          QKPLV+SI+  L PGGK+
Sbjct:   180 IFANAMVSFEHLISSYPGPLEIVSILCPDPHFKKRHQKRRVVQKPLVNSILQNLKPGGKI 239

Query:   240 Y 240
             +
Sbjct:   240 F 240

GO:0005634 "nucleus" evidence=ISM

GO:0006400 "tRNA modification" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0276491 mettl1 "tRNA (guanine-N7-)-methyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 134 (52.2 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 48/159 (30%), Positives = 71/159 (44%)

Query:    95 RIRQHVNPLSS-SFTVPA-PIP-DWSEVYK----NPTLPLMVDIGSGSGRFLIWLARRNP 147
             RI+ H NP S  +F  P  P   DW++ Y     N     + D+G G G  LI L+   P
Sbjct:    19 RIKAHANPASDYNFYYPTGPESYDWTKNYPQQAMNEKKVEIADVGCGYGGLLISLSSLFP 78

Query:   148 DSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV----SFKQLVSSYP-GPLMLV 202
             +  + +G+E+R K+V+  E  + +L   ++   F N SV    + K L + +  G L  +
Sbjct:    79 ERLS-VGMELRDKVVQYVEERIDKLREKHVG-QFQNISVIRTNAMKYLPNYFEKGQLQKI 136

Query:   203 SILCPDPHFXXXXXXXXXXQKPLVDSIIDYLMPGGKVYF 241
               L PDPHF             L+      L PG   YF
Sbjct:   137 FFLFPDPHFKKATHKRRIISPTLLSEYAYILAPGAYAYF 175

GO:0036265 "RNA (guanine-N7)-methylation" evidence=IEA;ISS

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISS

GO:0006400 "tRNA modification" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|Q74FT5 trmB "tRNA (guanine-N(7)-)-methyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 129 (50.5 bits), Expect = 6.8e-07, P = 6.8e-07
 Identities = 42/148 (28%), Positives = 66/148 (44%)

Query:    98 QHVNPLSSSFTV-PAPI--P-DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYL 153
             Q + P+ S F + P  +  P DW+ V+ N   PL ++IG G G F+   A  +P + N++
Sbjct:     2 QRIIPIDSPFFLNPDELGTPADWTAVFGNDN-PLALEIGCGIGDFIARTALDHPTT-NFI 59

Query:   154 GLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFXX 213
              ++   K   +    ++   ++N+  + A A     + +    G L  V I CPDP    
Sbjct:    60 AIDYYNKGCLKTCSRLERHGITNVRVVRAEARQFIVERIQK--GSLAAVYINCPDPWPKK 117

Query:   214 XXXXXXXXQKPLVDSIIDYLMPGGKVYF 241
                         V  I DYL PGG  YF
Sbjct:   118 RHRKRRLVNTQFVRFIRDYLAPGGDFYF 145

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0521 GSU_0521 "methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 129 (50.5 bits), Expect = 6.8e-07, P = 6.8e-07
 Identities = 42/148 (28%), Positives = 66/148 (44%)

Query:    98 QHVNPLSSSFTV-PAPI--P-DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYL 153
             Q + P+ S F + P  +  P DW+ V+ N   PL ++IG G G F+   A  +P + N++
Sbjct:     2 QRIIPIDSPFFLNPDELGTPADWTAVFGNDN-PLALEIGCGIGDFIARTALDHPTT-NFI 59

Query:   154 GLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFXX 213
              ++   K   +    ++   ++N+  + A A     + +    G L  V I CPDP    
Sbjct:    60 AIDYYNKGCLKTCSRLERHGITNVRVVRAEARQFIVERIQK--GSLAAVYINCPDPWPKK 117

Query:   214 XXXXXXXXQKPLVDSIIDYLMPGGKVYF 241
                         V  I DYL PGG  YF
Sbjct:   118 RHRKRRLVNTQFVRFIRDYLAPGGDFYF 145

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

TAIR|locus:2149443 AT5G24840 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 49/162 (30%), Positives = 72/162 (44%)

Query:    95 RIRQHVNPLSSS-FTVP-APIP-DWSEVYK------NPTLPLM--VDIGSGSGRFLIWLA 143
             R R H NPLS S F +P +P   D+S  +       N  +  +   DIG G G  LI LA
Sbjct:    23 RARAHSNPLSDSHFPIPISPAHVDYSLHFPKFVEADNKFIKKVEFADIGCGFGGLLISLA 82

Query:   144 RRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV----SFKQLVSSYP-GP 198
                PD+   +G+E+R K+ +  +  +  L  ++    + N SV    S K + + +  G 
Sbjct:    83 TLFPDT-LMIGMELRDKVTEYVKERILALRRTSSEGQYENISVVRTNSMKYIPNYFEKGQ 141

Query:   199 LMLVSILCPDPHFXXXXXXXXXXQKPLVDSIIDYLMPGGKVY 240
             L  +  L PDPHF             L+D     L  GG +Y
Sbjct:   142 LSKMFFLFPDPHFKEKNHRRRVISTHLLDEYAYVLRAGGIIY 183

GO:0005634 "nucleus" evidence=ISM

GO:0006400 "tRNA modification" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

FB|FBgn0025629 CG4045 [Drosophila melanogaster (taxid:7227)]

 Score = 112 (44.5 bits), Expect = 0.00020, P = 0.00020
 Identities = 56/179 (31%), Positives = 75/179 (41%)

Query:    79 LNLPVSNKITG--ELGHARIRQHVNPLSS-SFTVPA-PIP-DWSEVYKNPTLPLMV---D 130
             LN P S  +TG  +  + R R H NP++  SF  PA P   DW  +Y        V   D
Sbjct:    20 LN-PTS-AVTGLPQKRYYRQRAHSNPIADHSFDYPARPEDVDWRSMYPGIQQGQQVSFAD 77

Query:   131 IGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL--------ALSNIHFLFA 182
             IG G G FL+ L    P+  + +G+EIR K+       +  L        A  NI  L  
Sbjct:    78 IGCGYGGFLVTLGEMFPEKLS-IGMEIRVKVSDYVVDRIAALRRRCADTGAYQNIACLRT 136

Query:   183 NASVSFKQLVSSY-PGPLMLVSILCPDPHFXXXXXXXXXXQKPLVDSIIDYLMPGGKVY 240
             NA    K L + +  G L  +  L PDPHF           + L+      L  GG +Y
Sbjct:   137 NA---MKYLPNYFVKGQLEKMFFLYPDPHFKRAKHKWRIINQALLSEYAYILRKGGLLY 192

GO:0005575 "cellular_component" evidence=ND

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0006400 "tRNA modification" evidence=ISS

WB|WBGene00012205 W02B12.10 [Caenorhabditis elegans (taxid:6239)]

 Score = 111 (44.1 bits), Expect = 0.00026, P = 0.00026
 Identities = 52/184 (28%), Positives = 75/184 (40%)

Query:    73 ALEFAELN-LPVSNKITG--ELGHARIRQHVNPLSSSFTVPAPI-P---DWSEVYKNPTL 125
             AL   EL+  P    + G  +  H R R H NP  S   +  P+ P   DW++ Y + T 
Sbjct:     6 ALTEMELDHKPTCETVPGLPQKKHYRQRAHSNP-HSDHDIEYPLTPNHMDWTKYYGDYTK 64

Query:   126 PLMVD---IGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHF-LF 181
                VD   IG G G  L+ L+ + PD+   +G+EIR K+       +Q L   +     +
Sbjct:    65 GRQVDFADIGCGYGGLLMRLSPKYPDN-LMIGMEIRVKVSDYVNEKIQALRKHHAEAGHY 123

Query:   182 ANASVSFKQLVSSYP-----GPLMLVSILCPDPHFXXXXXXXXXXQKPLVDSIIDYLMPG 236
              N +V     +   P     G L  +  L PDPHF             L+      L  G
Sbjct:   124 RNVAVLRSNAMKYMPNYFHKGQLSKMFFLFPDPHFKNKKHKWRIITPTLLSEYAYVLREG 183

Query:   237 GKVY 240
             G +Y
Sbjct:   184 GIIY 187

GO:0006400 "tRNA modification" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|Q23126 W02B12.10 "tRNA (guanine-N(7)-)-methyltransferase" [Caenorhabditis elegans (taxid:6239)]

 Score = 111 (44.1 bits), Expect = 0.00026, P = 0.00026
 Identities = 52/184 (28%), Positives = 75/184 (40%)

Query:    73 ALEFAELN-LPVSNKITG--ELGHARIRQHVNPLSSSFTVPAPI-P---DWSEVYKNPTL 125
             AL   EL+  P    + G  +  H R R H NP  S   +  P+ P   DW++ Y + T 
Sbjct:     6 ALTEMELDHKPTCETVPGLPQKKHYRQRAHSNP-HSDHDIEYPLTPNHMDWTKYYGDYTK 64

Query:   126 PLMVD---IGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHF-LF 181
                VD   IG G G  L+ L+ + PD+   +G+EIR K+       +Q L   +     +
Sbjct:    65 GRQVDFADIGCGYGGLLMRLSPKYPDN-LMIGMEIRVKVSDYVNEKIQALRKHHAEAGHY 123

Query:   182 ANASVSFKQLVSSYP-----GPLMLVSILCPDPHFXXXXXXXXXXQKPLVDSIIDYLMPG 236
              N +V     +   P     G L  +  L PDPHF             L+      L  G
Sbjct:   124 RNVAVLRSNAMKYMPNYFHKGQLSKMFFLFPDPHFKNKKHKWRIITPTLLSEYAYVLREG 183

Query:   237 GKVY 240
             G +Y
Sbjct:   184 GIIY 187

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0006400 "tRNA modification" evidence=ISS

TIGR_CMR|VC_0453 VC_0453 "tRNA (guanine-N(7)-)-methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 110 (43.8 bits), Expect = 0.00029, P = 0.00029
 Identities = 30/126 (23%), Positives = 56/126 (44%)

Query:   115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174
             DW +V+ N   P++++IG G G  L+ +A+  P+  N+LG+E+    V       +E  +
Sbjct:    54 DWQQVFGNDN-PVVLEIGFGMGASLVEMAKNAPEK-NFLGIEVHSPGVGACLASAREAGV 111

Query:   175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFXXXXXXXXXXQKPLVDSIIDYLM 234
             +N+  +  +A   F  ++      L  + +  PDP            Q    + +   LM
Sbjct:   112 TNLRVMCHDAVEVFAHMIPD--NSLHTLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLM 169

Query:   235 PGGKVY 240
              G  V+
Sbjct:   170 IGSGVF 175

GO:0006400 "tRNA modification" evidence=ISS

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

UNIPROTKB|Q9UBP6 METTL1 "tRNA (guanine-N(7)-)-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 93 (37.8 bits), Expect = 0.00062, Sum P(2) = 0.00062
 Identities = 39/118 (33%), Positives = 50/118 (42%)

Query:   130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL------ALSNIHFLFAN 183
             DIG G G  L+ L+   PD+   LGLEIR K+    +  ++ L         NI  L +N
Sbjct:    82 DIGCGYGGLLVELSPLFPDT-LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSN 140

Query:   184 ASVSFKQLVSS-YPGPLMLVSILCPDPHFXXXXXXXXXXQKPLVDSIIDYLMPGGKVY 240
             A    K L +  Y G L  +  L PDPHF             L+      L  GG VY
Sbjct:   141 A---MKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVY 195

GO:0000049 "tRNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006400 "tRNA modification" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IDA

GO:0036265 "RNA (guanine-N7)-methylation" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2JJQ0	TRMB_SYNJB	2, ., 1, ., 1, ., 3, 3	0.5364	0.6099	0.6150	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
3rd Layer	2.1.1.33	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
COG0220	227	COG0220, COG0220, Predicted S-adenosylmethionine-d	7e-32
PRK00121	202	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransfe	2e-31
pfam02390	198	pfam02390, Methyltransf_4, Putative methyltransfer	2e-30
TIGR00091	194	TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methylt	7e-28
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	7e-08
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-07
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	7e-06
PRK14121	390	PRK14121, PRK14121, tRNA (guanine-N(7)-)-methyltra	6e-05
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	7e-04
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	8e-04
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	0.003

>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

 Score =  115 bits (291), Expect = 7e-32
 Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 12/152 (7%)

Query: 97  RQHVNPLSSS-----FTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGN 151
           +   N L  +             DWS ++ N   P++++IG G G FL+ +A++NP+  N
Sbjct: 16  KAQKNALEDNWPRLGLDPQEEPGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEK-N 74

Query: 152 YLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML--VSILCPDP 209
           +LG+EIR   V +A   ++EL L N+  L  +A     +++        L  + I  PDP
Sbjct: 75  FLGIEIRVPGVAKALKKIKELGLKNLRLLCGDA----VEVLDYLIPDGSLDKIYINFPDP 130

Query: 210 HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
             KK+HHKRR+ Q   +      L PGG ++F
Sbjct: 131 WPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162

Length = 227

>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed

 Score =  114 bits (288), Expect = 2e-31
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 8/152 (5%)

Query: 92  GHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGN 151
           G     Q          +     DW+E++ N   P+ ++IG G G FL+ +A+ NPD  N
Sbjct: 9   GRLTKGQQRAIEELWPRLSPAPLDWAELFGNDA-PIHLEIGFGKGEFLVEMAKANPDI-N 66

Query: 152 YLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY--PGPLMLVSILCPDP 209
           ++G+E+ +  V +A   ++E  L+N+  L  +A     +++      G L  + +  PDP
Sbjct: 67  FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDA----VEVLLDMFPDGSLDRIYLNFPDP 122

Query: 210 HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
             KK+HHKRR+VQ   +      L PGG+++F
Sbjct: 123 WPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154

Length = 202

>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase

 Score =  111 bits (280), Expect = 2e-30
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 9/131 (6%)

Query: 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL- 172
            DW  ++ N   PL ++IG G G FL+ +A++NPD   ++G+EIR   V +A   +  L 
Sbjct: 11  LDWQALFGNEQ-PLFLEIGCGMGDFLVAMAKKNPDK-LFIGIEIRVPGVDKALKKIIALR 68

Query: 173 ALSNIHFLFANASVSFKQLVSSY--PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSII 230
            L N+  L  +A     +L+ +    G L  + I  PDP  KK+HHKRR++Q   +    
Sbjct: 69  GLQNLRILCGDA----MKLLPNLFPDGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYA 124

Query: 231 DYLMPGGKVYF 241
             L PGG ++ 
Sbjct: 125 RVLKPGGVLHL 135

This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity. Length = 198

>gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase

 Score =  104 bits (262), Expect = 7e-28
 Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 4/128 (3%)

Query: 114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA 173
           PD++ V+ N   PL ++IG G GRFLI +A++NPD  N+LG+EI   +V  A     +L 
Sbjct: 7   PDFATVFGNKA-PLHLEIGCGKGRFLIDMAKQNPDK-NFLGIEIHTPIVLAANNKANKLG 64

Query: 174 LSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYL 233
           L N+H L  +A+    +      G L  V +  PDP  KK+H+KRR+ Q   +    + L
Sbjct: 65  LKNLHVLCGDANELLDKFFPD--GSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVL 122

Query: 234 MPGGKVYF 241
             GG ++F
Sbjct: 123 KKGGVIHF 130

This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria. It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In E. coli, this protein flanks the DNA repair protein MutY, also called micA [Protein synthesis, tRNA and rRNA base modification]. Length = 194

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 12/57 (21%), Positives = 31/57 (54%)

Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
           ++D+G G+G     LA +       +G++I ++ +++A+   ++L   N+ F+  + 
Sbjct: 7   VLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDI 63

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 17/113 (15%)

Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSF 188
           +DIG G+G   I LAR  P      G+++  ++++ A    +      I F+  +A  + 
Sbjct: 6   LDIGCGTGSLAIELARLFPG-ARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDAL 64

Query: 189 KQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
             L     G   +                       L+D++   L PGG++  
Sbjct: 65  DLL----EGFDAVFIGGGGGDLL------------ELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 13/113 (11%)

Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSF 188
           +D+G G+G   + LA          G++I    ++ A      L   N+  L  +A    
Sbjct: 3   LDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60

Query: 189 KQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
            +   S+        I+   P         R +++         L PGG +  
Sbjct: 61  PEADESFDV------IISDPPLHHLVEDLARFLEE-----ARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|237615 PRK14121, PRK14121, tRNA (guanine-N(7)-)-methyltransferase; Provisional

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 24/121 (19%)

Query: 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIR----QKLVKRAEFWVQELALSNIHFLF 181
            ++++IG GSGR L++ A+ NP+   ++G+EI     ++++K+ E     L L N+  + 
Sbjct: 124 KILIEIGFGSGRHLLYQAKNNPNK-LFIGIEIHTPSIEQVLKQIEL----LNLKNLLIIN 178

Query: 182 ANASVSFKQLVSSYPGPLMLVSILCPDPHF-----KKKHHKRRVVQKPLVDSIIDYLMPG 236
            +A +  + L S+    + +        HF     KK H  RRV+ +  ++  +  L PG
Sbjct: 179 YDARLLLELLPSNSVEKIFV--------HFPVPWDKKPH--RRVISEDFLNEALRVLKPG 228

Query: 237 G 237
           G
Sbjct: 229 G 229

Length = 390

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANA 184
             ++D G+GSG FL+  AR  PD+   +G+E+  +    A   +    L+  +  +  +A
Sbjct: 2   DRVLDPGAGSGAFLLAAARAGPDA-RVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60

Query: 185 SVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKR-RVVQKPLVDSIIDYLMPGGKVYF 241
                + +   P     + +  P    +    K  R +    + + +  L PGG +  
Sbjct: 61  -----RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113

This family contains methyltransferase domains. Length = 117

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 13/109 (11%)

Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSF 188
           +D+G G+GR L  LAR  P S    G++I ++ ++ A+  +++     + F+ A+A    
Sbjct: 2   LDLGCGTGRVLRALARAGPSS--VTGVDISKEALELAKERLRDKGP-KVRFVVADAR-DL 57

Query: 189 KQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG 237
                S+   L++ + L  D +   K        + L+      L PGG
Sbjct: 58  PFEEGSF--DLVICAGLSLD-YLSPK------QLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 8/56 (14%)

Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
           +D+G G+G     LARR        G+++  +++  A         +   F+  +A
Sbjct: 1   LDVGCGTGLLAEALARRGG--ARVTGVDLSPEMLALAR------KRAPRKFVVGDA 48

Members of this family are SAM dependent methyltransferases. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.92
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.91
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.89
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.85
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.83
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.82
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.82
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.82
KOG3115	249	consensus Methyltransferase-like protein [General	99.76
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.76
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.73
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.72
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.71
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.7
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.69
PLN02244	340	tocopherol O-methyltransferase	99.69
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.68
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.66
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.66
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.66
PRK11207	197	tellurite resistance protein TehB; Provisional	99.65
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.65
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.63
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.62
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.62
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.62
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.62
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.61
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.61
PRK07402	196	precorrin-6B methylase; Provisional	99.61
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.6
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.6
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.59
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.59
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.59
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.59
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.59
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.59
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.58
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.58
COG4123	248	Predicted O-methyltransferase [General function pr	99.57
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.56
PRK04266	226	fibrillarin; Provisional	99.56
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.56
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.56
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.55
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.54
PLN02336	475	phosphoethanolamine N-methyltransferase	99.54
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.54
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.53
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.53
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.53
PRK12335	287	tellurite resistance protein TehB; Provisional	99.52
PRK08317	241	hypothetical protein; Provisional	99.52
PLN02490	340	MPBQ/MSBQ methyltransferase	99.52
PRK06922	677	hypothetical protein; Provisional	99.51
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.5
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.5
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.5
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.49
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.49
KOG1271	227	consensus Methyltransferases [General function pre	99.49
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.48
PRK05785	226	hypothetical protein; Provisional	99.48
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.47
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.47
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.47
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.47
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.47
PLN03075	296	nicotianamine synthase; Provisional	99.46
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.46
PRK14967	223	putative methyltransferase; Provisional	99.45
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.45
PRK14968	188	putative methyltransferase; Provisional	99.45
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.44
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.44
PRK04457	262	spermidine synthase; Provisional	99.44
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.44
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.43
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.43
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.43
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.43
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.42
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.42
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.42
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.42
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.42
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.41
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.41
COG2890	280	HemK Methylase of polypeptide chain release factor	99.41
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.4
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.4
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.4
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.39
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.39
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.39
PRK00811	283	spermidine synthase; Provisional	99.38
PLN02476	278	O-methyltransferase	99.38
KOG4300	252	consensus Predicted methyltransferase [General fun	99.38
TIGR03438	301	probable methyltransferase. This model represents	99.37
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.37
PTZ00146	293	fibrillarin; Provisional	99.37
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.36
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.36
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.36
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.36
PLN02336	475	phosphoethanolamine N-methyltransferase	99.36
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.35
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.35
COG4122	219	Predicted O-methyltransferase [General function pr	99.35
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.35
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.34
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.34
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.33
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.32
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.31
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.3
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.3
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.29
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.29
PLN02366	308	spermidine synthase	99.28
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.28
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.28
TIGR00438	188	rrmJ cell division protein FtsJ.	99.28
KOG2361	264	consensus Predicted methyltransferase [General fun	99.27
PRK06202	232	hypothetical protein; Provisional	99.27
PRK01581	374	speE spermidine synthase; Validated	99.27
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.26
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.26
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.26
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.26
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.25
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.25
PHA03411	279	putative methyltransferase; Provisional	99.24
PRK03612	521	spermidine synthase; Provisional	99.24
PLN02672	1082	methionine S-methyltransferase	99.22
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.2
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.19
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.19
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.18
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.16
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.15
PHA03412	241	putative methyltransferase; Provisional	99.15
KOG3010	261	consensus Methyltransferase [General function pred	99.13
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.12
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.11
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.11
KOG2904	328	consensus Predicted methyltransferase [General fun	99.09
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.08
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.07
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.06
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.05
KOG2899	288	consensus Predicted methyltransferase [General fun	99.05
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.05
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.05
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.05
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.05
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.04
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.04
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.04
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	99.01
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.98
PLN02823	336	spermine synthase	98.98
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.96
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.94
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.9
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.89
COG2521	287	Predicted archaeal methyltransferase [General func	98.87
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.86
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.86
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.86
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.86
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.85
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.84
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.83
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.83
KOG1331	293	consensus Predicted methyltransferase [General fun	98.8
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.8
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.79
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.78
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.77
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.77
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.77
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.76
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.76
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.76
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.73
COG2520	341	Predicted methyltransferase [General function pred	98.71
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.7
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.7
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.69
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.69
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.68
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.68
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.68
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.63
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.63
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.58
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.57
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.56
PRK04148	134	hypothetical protein; Provisional	98.55
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.53
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.51
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.47
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.47
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.44
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.36
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.36
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.36
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.34
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.34
KOG2730	263	consensus Methylase [General function prediction o	98.32
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.32
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.32
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.32
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.3
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.3
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.27
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.27
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.26
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.21
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.19
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.15
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.1
COG4076	252	Predicted RNA methylase [General function predicti	98.1
KOG2940	325	consensus Predicted methyltransferase [General fun	98.09
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.08
PRK00536	262	speE spermidine synthase; Provisional	98.07
PF13679	141	Methyltransf_32: Methyltransferase domain	98.04
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.04
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.03
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.01
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.97
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.96
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.94
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.92
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.88
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.87
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.81
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.81
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.73
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.71
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.63
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.58
PRK10742	250	putative methyltransferase; Provisional	97.57
COG3897	218	Predicted methyltransferase [General function pred	97.56
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.44
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.41
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.4
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.37
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.29
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.22
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.14
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	97.11
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.11
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.1
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.02
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.02
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.94
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.75
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.75
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.74
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.71
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.56
COG0286	489	HsdM Type I restriction-modification system methyl	96.48
COG4798	238	Predicted methyltransferase [General function pred	96.47
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.45
PRK11524	284	putative methyltransferase; Provisional	96.42
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.42
PHA01634	156	hypothetical protein	96.4
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.38
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	96.3
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.3
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.28
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.23
PRK13699	227	putative methylase; Provisional	96.14
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.1
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.06
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.92
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.87
KOG3201	201	consensus Uncharacterized conserved protein [Funct	95.8
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	95.75
KOG1227	351	consensus Putative methyltransferase [General func	95.69
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.67
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.57
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	95.52
KOG2352	482	consensus Predicted spermine/spermidine synthase [	95.4
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	95.37
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.13
KOG2671	421	consensus Putative RNA methylase [Replication, rec	95.02
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	94.86
COG1565	370	Uncharacterized conserved protein [Function unknow	94.82
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.55
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.53
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.39
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.12
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	94.01
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	93.98
PLN02668	386	indole-3-acetate carboxyl methyltransferase	93.96
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.8
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	93.74
PRK11524	284	putative methyltransferase; Provisional	93.7
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	93.58
COG3129	292	Predicted SAM-dependent methyltransferase [General	93.44
KOG2078	495	consensus tRNA modification enzyme [RNA processing	93.43
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	93.33
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	93.31
PRK13699	227	putative methylase; Provisional	93.21
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	93.19
KOG2360	413	consensus Proliferation-associated nucleolar prote	92.99
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.91
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	92.53
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	92.49
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	92.47
COG1568	354	Predicted methyltransferases [General function pre	92.03
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	91.94
COG4301	321	Uncharacterized conserved protein [Function unknow	91.61
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	91.57
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	90.85
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	90.7
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	90.67
PLN02740	381	Alcohol dehydrogenase-like	90.4
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	90.28
PLN02827	378	Alcohol dehydrogenase-like	90.22
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	89.72
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	89.6
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	88.98
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	88.94
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	88.86
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	88.81
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	88.77
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	88.73
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	88.69
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	88.57
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	88.46
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	88.08
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	87.77
PTZ00357	1072	methyltransferase; Provisional	87.35
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	87.19
KOG3924	419	consensus Putative protein methyltransferase invol	87.03
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	87.01
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	86.67
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	86.47
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	86.32
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	86.06
KOG2912	419	consensus Predicted DNA methylase [Function unknow	85.92
PRK03659	601	glutathione-regulated potassium-efflux system prot	85.86
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	85.78
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	85.53
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	85.43
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	85.31
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	85.22
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	85.2
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	84.51
PRK07806	248	short chain dehydrogenase; Provisional	84.31
TIGR00497	501	hsdM type I restriction system adenine methylase (	84.24
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	84.21
PRK10669	558	putative cation:proton antiport protein; Provision	84.06
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	84.03
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	83.99
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	83.89
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	83.36
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	83.01
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	82.86
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	82.57
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	82.42
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	82.19
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	82.07
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	81.78
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	81.76
PRK08703	239	short chain dehydrogenase; Provisional	81.68
PRK07102	243	short chain dehydrogenase; Provisional	81.63
PLN02702	364	L-idonate 5-dehydrogenase	81.53
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	81.44
COG4121	252	Uncharacterized conserved protein [Function unknow	81.37
COG0863	302	DNA modification methylase [DNA replication, recom	81.35
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	81.28
PRK03562	621	glutathione-regulated potassium-efflux system prot	81.12
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	80.95
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	80.91
KOG2920	282	consensus Predicted methyltransferase [General fun	80.86
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	80.71
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	80.61
PRK10083	339	putative oxidoreductase; Provisional	80.35
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	80.3

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.92  E-value=3.3e-24  Score=179.14  Aligned_cols=125  Identities=42%  Similarity=0.756  Sum_probs=108.8

Q ss_pred             hhhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhc
Q 026219          113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLV  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~  192 (241)
                      ..+|.+.++.. .+.+||||||.|.+++.+|+++|+ ..++|||++...+..+.+++.+.+++|+.++++|+...++.++
T Consensus         7 ~~~~~~~f~~~-~~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~   84 (195)
T PF02390_consen    7 PLDWQEIFGND-NPLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF   84 (195)
T ss_dssp             TTCHHHHHTSC-CEEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS
T ss_pred             ccCHHHHcCCC-CCeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc
Confidence            44899999874 569999999999999999999999 9999999999999999999999999999999999998777765


Q ss_pred             cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +  ++++|.|.++|||||++++|++||+++..+++.+.++|+|||.|+|
T Consensus        85 ~--~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~  131 (195)
T PF02390_consen   85 P--PGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF  131 (195)
T ss_dssp             T--TTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred             c--CCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence            3  6999999999999999999999999999999999999999999975

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.91  E-value=4e-24  Score=181.99  Aligned_cols=125  Identities=38%  Similarity=0.653  Sum_probs=116.8

Q ss_pred             hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc
Q 026219          114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       114 ~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~  193 (241)
                      .+|...|..+..+.+||||||.|.++..+|+++|+ ..++|||+....+..|.+++.+.+++|+++++.|+.+.++.++ 
T Consensus        38 ~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~-  115 (227)
T COG0220          38 GDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI-  115 (227)
T ss_pred             chHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC-
Confidence            47888998876689999999999999999999999 8999999999999999999999999999999999998777765 


Q ss_pred             CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       +++++|.|.++|||||++++|++||+++..+++.+.++|+|||.|.|
T Consensus       116 -~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~  162 (227)
T COG0220         116 -PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF  162 (227)
T ss_pred             -CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence             35699999999999999999999999999999999999999999975

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.89  E-value=8.8e-23  Score=170.26  Aligned_cols=124  Identities=39%  Similarity=0.663  Sum_probs=110.6

Q ss_pred             hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc
Q 026219          114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       114 ~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~  193 (241)
                      .+|...|.+ ..++|||||||+|.++..+++++|+ .+++|+|+++++++.|++++++.+++|++++++|+.+..+..+ 
T Consensus         7 ~~~~~~f~~-~~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-   83 (194)
T TIGR00091         7 PDFATVFGN-KAPLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-   83 (194)
T ss_pred             CCHHHHhCC-CCceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-
Confidence            468888875 4689999999999999999999998 8999999999999999999998888899999999986443322 


Q ss_pred             CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       +++++|.|++++|+||+++++.++|++++.+++++.++|||||.|++
T Consensus        84 -~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~  130 (194)
T TIGR00091        84 -PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF  130 (194)
T ss_pred             -CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence             34689999999999999998889999999999999999999999975

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.85  E-value=7.2e-21  Score=172.76  Aligned_cols=121  Identities=24%  Similarity=0.468  Sum_probs=107.0

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      .+.+.+..+.++.+||||||+|.++..+|+++|+ ..++|+|+++.+++.|.+++...+++|+.++++|+...+.. +  
T Consensus       113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-~--  188 (390)
T PRK14121        113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-L--  188 (390)
T ss_pred             HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-C--
Confidence            3455565666789999999999999999999998 89999999999999999999999999999999999754322 2  


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++++|.|+++||+||+++++  ||+++..+++++.|+|+|||.+.|
T Consensus       189 ~~~s~D~I~lnFPdPW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l  233 (390)
T PRK14121        189 PSNSVEKIFVHFPVPWDKKPH--RRVISEDFLNEALRVLKPGGTLEL  233 (390)
T ss_pred             CCCceeEEEEeCCCCccccch--hhccHHHHHHHHHHHcCCCcEEEE
Confidence            478999999999999998876  899999999999999999999875

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.83  E-value=5.9e-20  Score=154.23  Aligned_cols=124  Identities=35%  Similarity=0.628  Sum_probs=107.0

Q ss_pred             hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc
Q 026219          114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       114 ~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~  193 (241)
                      ..|.+.+.+ ++.+|||||||+|.++..+++.+|+ .+|+|+|+|+++++.|+++++..+++|++++++|+.+.++..+ 
T Consensus        31 ~~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~-  107 (202)
T PRK00121         31 LDWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF-  107 (202)
T ss_pred             CCHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc-
Confidence            479998888 5789999999999999999999887 7999999999999999999988888889999999943333222 


Q ss_pred             CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       .++++|.|++++++||.+..++.++...+.+++++.++|||||.|+|
T Consensus       108 -~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i  154 (202)
T PRK00121        108 -PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF  154 (202)
T ss_pred             -CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence             36789999999999887766667777788999999999999999975

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.82  E-value=7.1e-20  Score=156.58  Aligned_cols=104  Identities=18%  Similarity=0.323  Sum_probs=92.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||||..++.+++..+. ++|+|+|+|+.|++.|+++..+.+..+++|+++|+++     ++++|.+||.|.
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~-g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~-----LPf~D~sFD~vt  124 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAEN-----LPFPDNSFDAVT  124 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCC-ceEEEEECCHHHHHHHHHHhhccCccceEEEEechhh-----CCCCCCccCEEE
Confidence            5799999999999999999999986 8999999999999999999998888789999999987     566799999999


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.|.-.+..+.        +.+|+|++|+|||||++.+
T Consensus       125 ~~fglrnv~d~--------~~aL~E~~RVlKpgG~~~v  154 (238)
T COG2226         125 ISFGLRNVTDI--------DKALKEMYRVLKPGGRLLV  154 (238)
T ss_pred             eeehhhcCCCH--------HHHHHHHHHhhcCCeEEEE
Confidence            88766554443        5999999999999998764

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.82  E-value=6.4e-20  Score=173.23  Aligned_cols=121  Identities=25%  Similarity=0.365  Sum_probs=107.3

Q ss_pred             hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC
Q 026219          116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      |...+. .+++.+||||||.|.++..+|+++|+ ..++|||++...+..+.+++++.+++|+.++..|+.. +...+  +
T Consensus       340 ~eklf~-~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~-~~~~~--~  414 (506)
T PRK01544        340 KEKLVN-EKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL-ILNDL--P  414 (506)
T ss_pred             HHHhCC-CCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH-HHHhc--C
Confidence            334454 35799999999999999999999999 8999999999999999999988899999999888753 33333  4


Q ss_pred             CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++++|.|+++|||||+|++|++||+++..+++.+.++|||||.|+|
T Consensus       415 ~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~  460 (506)
T PRK01544        415 NNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF  460 (506)
T ss_pred             cccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence            6889999999999999999999999999999999999999999875

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.82  E-value=8.4e-20  Score=156.54  Aligned_cols=107  Identities=21%  Similarity=0.287  Sum_probs=79.3

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ..++.+|||+|||||..+..++++.+..++|+|+|+|++|++.|+++.++.+..|++++++|+++     ++.++++||.
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~-----lp~~d~sfD~  119 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAED-----LPFPDNSFDA  119 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-------S-TT-EEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHH-----hcCCCCceeE
Confidence            34578999999999999999998864337999999999999999999998888899999999987     4556899999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++.|.-.+..+.        ...++|++|+|||||++.|
T Consensus       120 v~~~fglrn~~d~--------~~~l~E~~RVLkPGG~l~i  151 (233)
T PF01209_consen  120 VTCSFGLRNFPDR--------ERALREMYRVLKPGGRLVI  151 (233)
T ss_dssp             EEEES-GGG-SSH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEHHhhHHhhCCH--------HHHHHHHHHHcCCCeEEEE
Confidence            9988865444333        4899999999999999875

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=99.76  E-value=9.6e-19  Score=143.94  Aligned_cols=149  Identities=35%  Similarity=0.528  Sum_probs=128.1

Q ss_pred             cccCccceecccccCCC-CCCCCCC--hhhhHHHhcC-----CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHH
Q 026219           89 GELGHARIRQHVNPLSS-SFTVPAP--IPDWSEVYKN-----PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQK  160 (241)
Q Consensus        89 ~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~-----~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~  160 (241)
                      +++.+||+|+|.||++| +..+|..  ..+|...++.     .....+.|||||.|.+++.|+..||+ ..++|.||.-.
T Consensus        17 pqKr~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~K   95 (249)
T KOG3115|consen   17 PQKRYYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDK   95 (249)
T ss_pred             cHHHHHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCcc-ceeeeehhhHH
Confidence            35677999999999999 3445543  3588776543     22367999999999999999999999 89999999999


Q ss_pred             HHHHHHHHHHHhC-------CCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhcc
Q 026219          161 LVKRAEFWVQELA-------LSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYL  233 (241)
Q Consensus       161 ~v~~a~~~~~~~~-------l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~L  233 (241)
                      +.++.+++++...       ++|+.+.+.++...+++++.  .++++..++.||+|+++.+.+++|++...++.+..-+|
T Consensus        96 VsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~--kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l  173 (249)
T KOG3115|consen   96 VSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE--KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVL  173 (249)
T ss_pred             HHHHHHHHHHHHhccccccccccceeeeccchhhccchhh--hcccccceeecCChhHhhhhccceeechhHHHHHHhhh
Confidence            9999999988764       67899999999987777664  57888899999999999999999999999999999999


Q ss_pred             ccCCEEE
Q 026219          234 MPGGKVY  240 (241)
Q Consensus       234 kpGG~l~  240 (241)
                      ++||.++
T Consensus       174 ~~gg~~y  180 (249)
T KOG3115|consen  174 REGGILY  180 (249)
T ss_pred             hcCceEE
Confidence            9999987

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.76  E-value=7.2e-18  Score=127.37  Aligned_cols=105  Identities=25%  Similarity=0.351  Sum_probs=83.1

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +.+|||||||+|.++..+++++++ .+|+|+|+|+++++.|++++.+.+. ++++++++|+ ..    .......||.|+
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~----~~~~~~~~D~v~   75 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPG-ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EF----DPDFLEPFDLVI   75 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HG----GTTTSSCEEEEE
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-cc----CcccCCCCCEEE
Confidence            678999999999999999998888 8999999999999999999966555 6899999999 21    111346699988


Q ss_pred             EeC-CCC-chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILC-PDP-HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~-~~~-~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.. ... .+..      ...+.+++++.+.|+|||+++|
T Consensus        76 ~~~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~lvi  109 (112)
T PF12847_consen   76 CSGFTLHFLLPL------DERRRVLERIRRLLKPGGRLVI  109 (112)
T ss_dssp             ECSGSGGGCCHH------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ECCCccccccch------hHHHHHHHHHHHhcCCCcEEEE
Confidence            776 221 1110      1124889999999999999986

...

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.73  E-value=4.5e-17  Score=130.31  Aligned_cols=105  Identities=28%  Similarity=0.481  Sum_probs=86.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHH-HCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLAR-RNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~-~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.++..+++ .++. .+++|+|+|++|++.|++++++.+.+|++|+++|+.+ ++..   ++..||.|
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~-~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~---~~~~~D~I   77 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPG-AKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQE---LEEKFDII   77 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTT-SEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGC---SSTTEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCC-CEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccc---cCCCeeEE
Confidence            468999999999999999994 5666 8999999999999999999999999899999999987 3221   12789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +...+..+..+.        ..+++++.++|++||.+++
T Consensus        78 ~~~~~l~~~~~~--------~~~l~~~~~~lk~~G~~i~  108 (152)
T PF13847_consen   78 ISNGVLHHFPDP--------EKVLKNIIRLLKPGGILII  108 (152)
T ss_dssp             EEESTGGGTSHH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCchhhccCH--------HHHHHHHHHHcCCCcEEEE
Confidence            887554444333        3899999999999999875

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.72  E-value=9.3e-17  Score=139.94  Aligned_cols=105  Identities=16%  Similarity=0.215  Sum_probs=84.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHH---hCCCCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQE---LALSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~---~~l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      +++.+|||||||+|.++..++++. +. ++|+|+|+|++|++.|+++...   ....+++++++|+.+     ++.++++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~-----lp~~~~s  145 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD-----LPFDDCY  145 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc-----CCCCCCC
Confidence            346899999999999999999875 45 6899999999999999887542   234589999999976     3445789


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||.|++.+...+..+.        ..++++++|+|||||++++
T Consensus       146 fD~V~~~~~l~~~~d~--------~~~l~ei~rvLkpGG~l~i  180 (261)
T PLN02233        146 FDAITMGYGLRNVVDR--------LKAMQEMYRVLKPGSRVSI  180 (261)
T ss_pred             EeEEEEecccccCCCH--------HHHHHHHHHHcCcCcEEEE
Confidence            9999876654443333        4899999999999999864

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.71  E-value=2.9e-17  Score=119.44  Aligned_cols=95  Identities=23%  Similarity=0.396  Sum_probs=75.8

Q ss_pred             EEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCC
Q 026219          129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPD  208 (241)
Q Consensus       129 LDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~  208 (241)
                      ||+|||+|..+..++++ +. .+++|+|+++++++.++++...   .++.++.+|+.+     ++.++++||.|+....-
T Consensus         1 LdiG~G~G~~~~~l~~~-~~-~~v~~~D~~~~~~~~~~~~~~~---~~~~~~~~d~~~-----l~~~~~sfD~v~~~~~~   70 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GG-ASVTGIDISEEMLEQARKRLKN---EGVSFRQGDAED-----LPFPDNSFDVVFSNSVL   70 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TT-CEEEEEES-HHHHHHHHHHTTT---STEEEEESBTTS-----SSS-TT-EEEEEEESHG
T ss_pred             CEecCcCCHHHHHHHhc-cC-CEEEEEeCCHHHHHHHHhcccc---cCchheeehHHh-----Cccccccccccccccce
Confidence            89999999999999998 55 7899999999999999987643   356799999987     45568999999877654


Q ss_pred             CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          209 PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       209 ~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|.++.        +.+++++.|+|||||+++|
T Consensus        71 ~~~~~~--------~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   71 HHLEDP--------EAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GGSSHH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             eeccCH--------HHHHHHHHHHcCcCeEEeC
Confidence            444333        4999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.70  E-value=3e-16  Score=133.59  Aligned_cols=105  Identities=20%  Similarity=0.301  Sum_probs=86.3

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||+|||+|.++..+++.. +. ++|+|+|+|+++++.++++++..+.++++++.+|+.+     .+.+++++|.
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~fD~  117 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME-----LPFDDNSFDY  117 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhc-----CCCCCCCccE
Confidence            346899999999999999999886 45 7999999999999999999988777889999999975     2334678999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++.+...+..+.        .++++++.++|+|||++++
T Consensus       118 V~~~~~l~~~~~~--------~~~l~~~~~~Lk~gG~l~~  149 (231)
T TIGR02752       118 VTIGFGLRNVPDY--------MQVLREMYRVVKPGGKVVC  149 (231)
T ss_pred             EEEecccccCCCH--------HHHHHHHHHHcCcCeEEEE
Confidence            8876544333222        4899999999999999864

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.69  E-value=2.3e-16  Score=130.99  Aligned_cols=98  Identities=22%  Similarity=0.216  Sum_probs=84.6

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||||||+|..++.+++..++ ++|+|+|+|++|++.|++++++.++++++++.+|+.+     ... +++||.|+.
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~-----~~~-~~~fDlV~~  118 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE-----FGQ-EEKFDVVTS  118 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh-----CCC-CCCccEEEE
Confidence            689999999999999999998887 8999999999999999999999998889999999976     222 568999887


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.....            +.+++.++++|||||.+++
T Consensus       119 ~~~~~~------------~~~l~~~~~~LkpGG~lv~  143 (187)
T PRK00107        119 RAVASL------------SDLVELCLPLLKPGGRFLA  143 (187)
T ss_pred             ccccCH------------HHHHHHHHHhcCCCeEEEE
Confidence            542211            4899999999999999875

>PLN02244 tocopherol O-methyltransferase

Probab=99.69  E-value=2.5e-16  Score=142.08  Aligned_cols=103  Identities=24%  Similarity=0.355  Sum_probs=86.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.++..+++++ + .+|+|||+|+.|++.++++++..++ ++++++++|+.+     .+..+++||.|
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~-g-~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~-----~~~~~~~FD~V  190 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKY-G-ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN-----QPFEDGQFDLV  190 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhc-C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc-----CCCCCCCccEE
Confidence            46789999999999999999987 4 6899999999999999999988877 479999999976     34457899999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......|..+.        ..++++++++|||||.|+|
T Consensus       191 ~s~~~~~h~~d~--------~~~l~e~~rvLkpGG~lvi  221 (340)
T PLN02244        191 WSMESGEHMPDK--------RKFVQELARVAAPGGRIII  221 (340)
T ss_pred             EECCchhccCCH--------HHHHHHHHHHcCCCcEEEE
Confidence            875544333332        4899999999999999875

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.68  E-value=7.9e-16  Score=117.69  Aligned_cols=102  Identities=24%  Similarity=0.293  Sum_probs=84.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .+.+|||+|||+|.++..+++++++ .+|+|+|+|+.+++.++++++..+..+++++.+|+....+.    .+..+|.|+
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D~v~   93 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED----SLPEPDRVF   93 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh----hcCCCCEEE
Confidence            4579999999999999999999888 89999999999999999999888888899999998642211    235789887


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......           ..++++++.++|||||.+++
T Consensus        94 ~~~~~~~-----------~~~~l~~~~~~Lk~gG~li~  120 (124)
T TIGR02469        94 IGGSGGL-----------LQEILEAIWRRLRPGGRIVL  120 (124)
T ss_pred             ECCcchh-----------HHHHHHHHHHHcCCCCEEEE
Confidence            7543221           14899999999999999975

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.66  E-value=7.3e-16  Score=125.96  Aligned_cols=108  Identities=20%  Similarity=0.315  Sum_probs=87.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...+|||+|||+|.+++.++++.+. .+|+++|+++.+++.++++++.+++.+++++.+|..+.    .  .+..||.|+
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~----~--~~~~fD~Iv  103 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA----L--PDGKFDLIV  103 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT----C--CTTCEEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc----c--cccceeEEE
Confidence            4688999999999999999999988 89999999999999999999999987799999998752    2  258899999


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.|-...   ......+.+.+++...+.|||||.+++
T Consensus       104 ~NPP~~~~---~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen  104 SNPPFHAG---GDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             E---SBTT---SHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             Eccchhcc---cccchhhHHHHHHHHHHhccCCCEEEE
Confidence            98764221   111223557999999999999999864

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.66  E-value=8.6e-16  Score=126.97  Aligned_cols=99  Identities=23%  Similarity=0.185  Sum_probs=83.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|..+..++...+. .+|+|+|+|++|++.+++++++.+++|++++++|+.+.     . .++.+|.|+
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-----~-~~~~fD~I~  114 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-----Q-HEEQFDVIT  114 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-----c-ccCCccEEE
Confidence            3689999999999999999988877 79999999999999999999988888899999999762     1 257899887


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ... -.+.           ..+++.+.++|+|||.+++
T Consensus       115 s~~-~~~~-----------~~~~~~~~~~LkpgG~lvi  140 (181)
T TIGR00138       115 SRA-LASL-----------NVLLELTLNLLKVGGYFLA  140 (181)
T ss_pred             ehh-hhCH-----------HHHHHHHHHhcCCCCEEEE
Confidence            654 1111           4788999999999999875

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.66  E-value=4.5e-16  Score=131.88  Aligned_cols=129  Identities=21%  Similarity=0.322  Sum_probs=96.5

Q ss_pred             ccccccCccceecccccCCCCCCCCCChhhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHH
Q 026219           86 KITGELGHARIRQHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA  165 (241)
Q Consensus        86 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a  165 (241)
                      ..|...+++++...+||..-.|....    ....+. -.+.+|||||||-|.++..+|+..   .+|+|+|+++++++.|
T Consensus        26 ~wwd~~g~f~~LH~~N~~rl~~i~~~----~~~~~~-l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~A   97 (243)
T COG2227          26 RWWDPEGEFKPLHKINPLRLDYIREV----ARLRFD-LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVA   97 (243)
T ss_pred             hhcCCCCceeeeeeeccchhhhhhhh----hhcccC-CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHH
Confidence            44456777888888888664332211    111111 247899999999999999999984   5799999999999999


Q ss_pred             HHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE-----eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          166 EFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI-----LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       166 ~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~-----~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +.++.+.++ ++++....+++.     ....++||.|++     |.++|             +.+++.+.+++||||.++
T Consensus        98 k~ha~e~gv-~i~y~~~~~edl-----~~~~~~FDvV~cmEVlEHv~dp-------------~~~~~~c~~lvkP~G~lf  158 (243)
T COG2227          98 KLHALESGV-NIDYRQATVEDL-----ASAGGQFDVVTCMEVLEHVPDP-------------ESFLRACAKLVKPGGILF  158 (243)
T ss_pred             HHhhhhccc-cccchhhhHHHH-----HhcCCCccEEEEhhHHHccCCH-------------HHHHHHHHHHcCCCcEEE
Confidence            999988877 477777777652     212378998854     45555             589999999999999988


Q ss_pred             c
Q 026219          241 F  241 (241)
Q Consensus       241 ~  241 (241)
                      +
T Consensus       159 ~  159 (243)
T COG2227         159 L  159 (243)
T ss_pred             E
Confidence            5

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.65  E-value=2.6e-15  Score=125.57  Aligned_cols=111  Identities=16%  Similarity=0.174  Sum_probs=84.6

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      .+.+.+...++.+|||+|||+|..+..++++  + .+|+|+|+|++|++.++++++..++.++++...|+.+     .+ 
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~--g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-----~~-   91 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--G-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-----LT-   91 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHHC--C-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-----CC-
Confidence            4444444434689999999999999999987  4 5799999999999999999988888889999999865     22 


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +++.||.|+......+...      .....+++++.++|||||.++
T Consensus        92 ~~~~fD~I~~~~~~~~~~~------~~~~~~l~~i~~~LkpgG~~~  131 (197)
T PRK11207         92 FDGEYDFILSTVVLMFLEA------KTIPGLIANMQRCTKPGGYNL  131 (197)
T ss_pred             cCCCcCEEEEecchhhCCH------HHHHHHHHHHHHHcCCCcEEE
Confidence            2467998876543221110      011599999999999999854

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.65  E-value=1.2e-15  Score=132.31  Aligned_cols=104  Identities=18%  Similarity=0.151  Sum_probs=83.1

Q ss_pred             hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC
Q 026219          116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      +.+.+...++.+|||||||+|.++..+++++|+ .+|+|+|+|+.|++.|++       .+++++++|+.+.    .  +
T Consensus        21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~-------~~~~~~~~d~~~~----~--~   86 (255)
T PRK14103         21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARE-------RGVDARTGDVRDW----K--P   86 (255)
T ss_pred             HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHh-------cCCcEEEcChhhC----C--C
Confidence            444444445689999999999999999999887 899999999999999865       2578999998652    1  3


Q ss_pred             CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++||.|+.++.-.|..+.        ..++++++++|||||.++|
T Consensus        87 ~~~fD~v~~~~~l~~~~d~--------~~~l~~~~~~LkpgG~l~~  124 (255)
T PRK14103         87 KPDTDVVVSNAALQWVPEH--------ADLLVRWVDELAPGSWIAV  124 (255)
T ss_pred             CCCceEEEEehhhhhCCCH--------HHHHHHHHHhCCCCcEEEE
Confidence            5789999887655444332        4899999999999999875

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.63  E-value=4.5e-15  Score=129.63  Aligned_cols=105  Identities=18%  Similarity=0.313  Sum_probs=84.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|..++.+++......+|+|+|+|++|++.|+++.+..+..+++++.+|+.+     .+..++.||.|+
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~-----l~~~~~~fD~Vi  151 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEA-----LPVADNSVDVII  151 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhh-----CCCCCCceeEEE
Confidence            478999999999999888887653326899999999999999999988888899999999865     333467899887


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+....+..+.        ..++++++++|||||+|++
T Consensus       152 ~~~v~~~~~d~--------~~~l~~~~r~LkpGG~l~i  181 (272)
T PRK11873        152 SNCVINLSPDK--------ERVFKEAFRVLKPGGRFAI  181 (272)
T ss_pred             EcCcccCCCCH--------HHHHHHHHHHcCCCcEEEE
Confidence            65432222222        4899999999999999875

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.62  E-value=5.4e-15  Score=125.88  Aligned_cols=113  Identities=12%  Similarity=0.218  Sum_probs=89.8

Q ss_pred             hHHHh----cCCCCCcEEEEcCCccHHHHHHHHHCCCC-----cEEEEEeCCHHHHHHHHHHHHHhCCC---CEEEEEcc
Q 026219          116 WSEVY----KNPTLPLMVDIGSGSGRFLIWLARRNPDS-----GNYLGLEIRQKLVKRAEFWVQELALS---NIHFLFAN  183 (241)
Q Consensus       116 ~~~~~----~~~~~~~VLDIGCGtG~~~~~la~~~p~~-----~~v~giDis~~~v~~a~~~~~~~~l~---ni~~~~~D  183 (241)
                      |.+.+    ...++.++||++||||-+++.+.+..+..     .+|+.+||||+|+..++++.++.++.   .+.|+.+|
T Consensus        88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d  167 (296)
T KOG1540|consen   88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD  167 (296)
T ss_pred             HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence            65544    33467899999999999999999875432     58999999999999999999887763   38999999


Q ss_pred             ccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          184 ASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       184 ~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++     +++++.++|..++.|.-.+-...        +..|++++|+|||||+|++
T Consensus       168 AE~-----LpFdd~s~D~yTiafGIRN~th~--------~k~l~EAYRVLKpGGrf~c  212 (296)
T KOG1540|consen  168 AED-----LPFDDDSFDAYTIAFGIRNVTHI--------QKALREAYRVLKPGGRFSC  212 (296)
T ss_pred             ccc-----CCCCCCcceeEEEecceecCCCH--------HHHHHHHHHhcCCCcEEEE
Confidence            987     56678999998877643211111        5999999999999999863

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.62  E-value=1.9e-15  Score=131.07  Aligned_cols=103  Identities=18%  Similarity=0.283  Sum_probs=83.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+|||||||+|.++..+++.  + .+|+|+|+|++|++.|+++++..++ .+++++++|+.+..    +..+++||+|
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~--g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~----~~~~~~fD~V  116 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAEL--G-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA----QHLETPVDLI  116 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh----hhcCCCCCEE
Confidence            4579999999999999999997  3 5799999999999999999988876 57999999997631    1235789998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++....|..++        ..+++++.++|||||.+++
T Consensus       117 ~~~~vl~~~~~~--------~~~l~~~~~~LkpgG~l~i  147 (255)
T PRK11036        117 LFHAVLEWVADP--------KSVLQTLWSVLRPGGALSL  147 (255)
T ss_pred             EehhHHHhhCCH--------HHHHHHHHHHcCCCeEEEE
Confidence            876543333222        4899999999999999864

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.62  E-value=6.7e-15  Score=124.53  Aligned_cols=103  Identities=21%  Similarity=0.318  Sum_probs=83.5

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      +...++.+|||||||+|.++..+++..+..++|+|+|+++++++.|++++++.+++|++++.+|+.+..    . ....|
T Consensus        73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~----~-~~~~f  147 (215)
T TIGR00080        73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW----E-PLAPY  147 (215)
T ss_pred             hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC----c-ccCCC
Confidence            333457899999999999999999986533689999999999999999999999889999999997621    1 23579


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|++..+.+              .+.+.+.+.|+|||++++
T Consensus       148 D~Ii~~~~~~--------------~~~~~~~~~L~~gG~lv~  175 (215)
T TIGR00080       148 DRIYVTAAGP--------------KIPEALIDQLKEGGILVM  175 (215)
T ss_pred             CEEEEcCCcc--------------cccHHHHHhcCcCcEEEE
Confidence            9988775433              445668899999999875

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.62  E-value=4.5e-15  Score=128.51  Aligned_cols=106  Identities=19%  Similarity=0.248  Sum_probs=84.7

Q ss_pred             hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC
Q 026219          116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      +.......++.+|||||||+|.++..+++.+++ .+|+|+|+|+.|++.|+++.     +++.++.+|+.+.    .  +
T Consensus        23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~----~--~   90 (258)
T PRK01683         23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPA-ARITGIDSSPAMLAEARSRL-----PDCQFVEADIASW----Q--P   90 (258)
T ss_pred             HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhC-----CCCeEEECchhcc----C--C
Confidence            344343345689999999999999999999887 89999999999999998753     5789999998752    1  3


Q ss_pred             CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.++|.|+.+....|.++.        ..+++++.++|||||.+++
T Consensus        91 ~~~fD~v~~~~~l~~~~d~--------~~~l~~~~~~LkpgG~~~~  128 (258)
T PRK01683         91 PQALDLIFANASLQWLPDH--------LELFPRLVSLLAPGGVLAV  128 (258)
T ss_pred             CCCccEEEEccChhhCCCH--------HHHHHHHHHhcCCCcEEEE
Confidence            4689999877665555433        4899999999999999875

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.61  E-value=5.1e-15  Score=112.66  Aligned_cols=112  Identities=21%  Similarity=0.263  Sum_probs=85.3

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +.+|||+|||+|.++..+++.. . .+++|+|+++..++.++.++...++ .+++++++|+.+..+.   ..+.++|.|+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~---~~~~~~D~Iv   75 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP---LPDGKFDLIV   75 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT---CTTT-EEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh---ccCceeEEEE
Confidence            3589999999999999999998 5 6899999999999999999999887 5799999999764312   2468899999


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.|-..........+..+..+++.+.++|||||.+++
T Consensus        76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence            88764211111112223567999999999999999875

...

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.61  E-value=1.3e-14  Score=120.01  Aligned_cols=100  Identities=20%  Similarity=0.297  Sum_probs=83.1

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||||||+|.++..+++++++ .+|+|+|+|+.+++.++++++..++.+++++.+|+...       .+..+|.|
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-------~~~~~D~v  101 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-------LPGKADAI  101 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-------cCcCCCEE
Confidence            35689999999999999999999887 89999999999999999999888877899999987431       13578988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.......           ..+++.+.++|+|||.+++
T Consensus       102 ~~~~~~~~~-----------~~~l~~~~~~Lk~gG~lv~  129 (187)
T PRK08287        102 FIGGSGGNL-----------TAIIDWSLAHLHPGGRLVL  129 (187)
T ss_pred             EECCCccCH-----------HHHHHHHHHhcCCCeEEEE
Confidence            876432211           4789999999999999874

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.61  E-value=1.4e-14  Score=120.80  Aligned_cols=102  Identities=22%  Similarity=0.342  Sum_probs=81.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+|||+|.++..+++..++ .+|+|+|+|+++++.+++++++.+..+++++.+|+.+.++..    ...+|.+
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~----~~~~d~v  113 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL----APAPDRV  113 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC----CCCCCEE
Confidence            34689999999999999999988877 899999999999999999999888888999999997533322    1234555


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++....+.            ..+++++.++|+|||++++
T Consensus       114 ~~~~~~~~------------~~~l~~~~~~LkpgG~li~  140 (196)
T PRK07402        114 CIEGGRPI------------KEILQAVWQYLKPGGRLVA  140 (196)
T ss_pred             EEECCcCH------------HHHHHHHHHhcCCCeEEEE
Confidence            55432221            4899999999999999875

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.60  E-value=3.4e-15  Score=133.61  Aligned_cols=102  Identities=23%  Similarity=0.235  Sum_probs=80.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.++..+++.  + .+|+|||+|+++++.|+++.+..+. .+++++++|+.+     ++..+++||.|
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~--g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~-----l~~~~~~FD~V  202 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM--G-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK-----LADEGRKFDAV  202 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH-----hhhccCCCCEE
Confidence            3568999999999999999875  4 6899999999999999988765544 479999999875     22235789988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +....-.|..+.        ..+++++.++|||||.++|
T Consensus       203 i~~~vLeHv~d~--------~~~L~~l~r~LkPGG~lii  233 (322)
T PLN02396        203 LSLEVIEHVANP--------AEFCKSLSALTIPNGATVL  233 (322)
T ss_pred             EEhhHHHhcCCH--------HHHHHHHHHHcCCCcEEEE
Confidence            764432222222        4999999999999999985

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.60  E-value=3e-15  Score=111.63  Aligned_cols=97  Identities=28%  Similarity=0.381  Sum_probs=73.5

Q ss_pred             EEEEcCCccHHHHHHHHHC---CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          128 MVDIGSGSGRFLIWLARRN---PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       128 VLDIGCGtG~~~~~la~~~---p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      |||+|||+|..+..+++.+   +. .+++|+|+|++|++.++++.+..+. +++++++|+.+. +.    .++++|+|+.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l-~~----~~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDL-PF----SDGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCH-HH----HSSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHC-cc----cCCCeeEEEE
Confidence            7999999999999999987   33 6899999999999999999887665 899999999872 22    3578999887


Q ss_pred             eCC-CCchhhhhhhcccchHHHHHHHHhccccCC
Q 026219          205 LCP-DPHFKKKHHKRRVVQKPLVDSIIDYLMPGG  237 (241)
Q Consensus       205 ~~~-~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG  237 (241)
                      ... -.+..+      .....+++++.++|||||
T Consensus        74 ~~~~~~~~~~------~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   74 SGLSLHHLSP------EELEALLRRIARLLRPGG  101 (101)
T ss_dssp             -TTGGGGSSH------HHHHHHHHHHHHTEEEEE
T ss_pred             cCCccCCCCH------HHHHHHHHHHHHHhCCCC
Confidence            432 222211      122599999999999998

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.59  E-value=6.2e-15  Score=127.37  Aligned_cols=102  Identities=13%  Similarity=0.244  Sum_probs=79.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHH--CCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSGSGRFLIWLARR--NPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~--~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ++.+|||||||+|..+..+++.  .|+ ++++|+|+|+.|++.|+++++..+.. +++++++|+.+     .+  ...+|
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~-~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~-----~~--~~~~D  127 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDN-CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD-----IA--IENAS  127 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh-----CC--CCCCC
Confidence            4689999999999999999884  466 89999999999999999999877664 79999999875     22  23467


Q ss_pred             EEEEeCCCCch--hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHF--KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~--~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+.++...+.  .++        ..+++++++.|||||.+++
T Consensus       128 ~vv~~~~l~~l~~~~~--------~~~l~~i~~~LkpGG~l~l  162 (247)
T PRK15451        128 MVVLNFTLQFLEPSER--------QALLDKIYQGLNPGGALVL  162 (247)
T ss_pred             EEehhhHHHhCCHHHH--------HHHHHHHHHhcCCCCEEEE
Confidence            76654432111  111        4899999999999999875

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.59  E-value=1.4e-14  Score=120.94  Aligned_cols=102  Identities=10%  Similarity=0.045  Sum_probs=76.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +..+|||+|||+|..+..++++  + ..|+|+|+|+.|++.++++++..+++ +++..+|+..     .+ .+.++|.|+
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~--g-~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~-----~~-~~~~fD~I~   99 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLA--G-YDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINA-----AA-LNEDYDFIF   99 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHC--C-CeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchh-----cc-ccCCCCEEE
Confidence            3579999999999999999986  4 57999999999999999988877764 7778888753     11 245788886


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+...      .....++++++++|||||++++
T Consensus       100 ~~~~~~~~~~------~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477       100 STVVFMFLQA------GRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             EecccccCCH------HHHHHHHHHHHHHhCCCcEEEE
Confidence            5533221110      0114899999999999998553

Part of a tellurite-reducing operon tehA and tehB

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.59  E-value=4.5e-16  Score=115.47  Aligned_cols=99  Identities=29%  Similarity=0.425  Sum_probs=65.6

Q ss_pred             EEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCC
Q 026219          129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPD  208 (241)
Q Consensus       129 LDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~  208 (241)
                      ||||||+|.++..+.+.++. .+++|+|+|+.|++.++++..+.+..+...+..+..+....   ..+++||.|+....-
T Consensus         1 LdiGcG~G~~~~~l~~~~~~-~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~V~~~~vl   76 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPD-ARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY---DPPESFDLVVASNVL   76 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-E-EEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C---CC----SEEEEE-TT
T ss_pred             CEeCccChHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc---ccccccceehhhhhH
Confidence            79999999999999999988 89999999999999999998887655666666555542111   112589999877766


Q ss_pred             CchhhhhhhcccchHHHHHHHHhccccCCEE
Q 026219          209 PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV  239 (241)
Q Consensus       209 ~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l  239 (241)
                      .|.++.        +.++++++++|||||.|
T Consensus        77 ~~l~~~--------~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   77 HHLEDI--------EAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S--S-H--------HHHHHHHTTT-TSS-EE
T ss_pred             hhhhhH--------HHHHHHHHHHcCCCCCC
Confidence            665443        49999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.59  E-value=2e-14  Score=121.53  Aligned_cols=103  Identities=18%  Similarity=0.315  Sum_probs=82.4

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      ....++.+|||||||+|..+..+++..+..++|+|+|+++++++.++++++..+..|++++.+|+.+.+     ..++.|
T Consensus        72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-----~~~~~f  146 (212)
T PRK13942         72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-----EENAPY  146 (212)
T ss_pred             cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-----CcCCCc
Confidence            333457899999999999999999886432689999999999999999999888889999999997531     124779


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|++...-+              .+.+.+.+.|||||++++
T Consensus       147 D~I~~~~~~~--------------~~~~~l~~~LkpgG~lvi  174 (212)
T PRK13942        147 DRIYVTAAGP--------------DIPKPLIEQLKDGGIMVI  174 (212)
T ss_pred             CEEEECCCcc--------------cchHHHHHhhCCCcEEEE
Confidence            9988765432              334567789999999875

>TIGR00740 methyltransferase, putative

Probab=99.59  E-value=1.4e-14  Score=124.28  Aligned_cols=104  Identities=16%  Similarity=0.209  Sum_probs=80.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ++.+|||||||+|.++..+++++  |+ ++++|+|+|++|++.|+++++..+. .+++++++|+.+     .+  ...+|
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~-~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-----~~--~~~~d  124 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPN-VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-----VE--IKNAS  124 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-----CC--CCCCC
Confidence            46789999999999999999874  56 8999999999999999999877654 479999999975     22  12367


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|++.+..++....      -...++++++++|||||.+++
T Consensus       125 ~v~~~~~l~~~~~~------~~~~~l~~i~~~LkpgG~l~i  159 (239)
T TIGR00740       125 MVILNFTLQFLPPE------DRIALLTKIYEGLNPNGVLVL  159 (239)
T ss_pred             EEeeecchhhCCHH------HHHHHHHHHHHhcCCCeEEEE
Confidence            77666544332111      014899999999999999875

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.59  E-value=1.2e-14  Score=126.69  Aligned_cols=110  Identities=18%  Similarity=0.213  Sum_probs=83.6

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      .+...+...++.+|||||||+|..+..+++.+ + ++|+|+|+|++|++.|+++...  ..++.++.+|+.+     .+.
T Consensus        43 ~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~-~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~-----~~~  113 (263)
T PTZ00098         43 KILSDIELNENSKVLDIGSGLGGGCKYINEKY-G-AHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILK-----KDF  113 (263)
T ss_pred             HHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-C-CEEEEEECCHHHHHHHHHHcCc--CCceEEEECCccc-----CCC
Confidence            34444444457899999999999999998875 4 6899999999999999987643  2579999999975     333


Q ss_pred             CCCcEeEEEEeCCCCch--hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHF--KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~--~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++++||+|+......+.  .+.        ..++++++++|||||.|+|
T Consensus       114 ~~~~FD~V~s~~~l~h~~~~d~--------~~~l~~i~r~LkPGG~lvi  154 (263)
T PTZ00098        114 PENTFDMIYSRDAILHLSYADK--------KKLFEKCYKWLKPNGILLI  154 (263)
T ss_pred             CCCCeEEEEEhhhHHhCCHHHH--------HHHHHHHHHHcCCCcEEEE
Confidence            46889998764321111  122        4899999999999999975

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.58  E-value=3.3e-14  Score=119.56  Aligned_cols=99  Identities=15%  Similarity=0.219  Sum_probs=80.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|..+..+++..+..++|+|+|+++++++.|+++++..+.. +++++.+|+.+.+    . .++.||.|
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~I  146 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL----E-KHAPFDAI  146 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC----c-cCCCccEE
Confidence            4689999999999999999988752268999999999999999999988875 5999999997632    1 24689998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++....+              .+.+++.+.|+|||++++
T Consensus       147 i~~~~~~--------------~~~~~l~~~L~~gG~lvi  171 (205)
T PRK13944        147 IVTAAAS--------------TIPSALVRQLKDGGVLVI  171 (205)
T ss_pred             EEccCcc--------------hhhHHHHHhcCcCcEEEE
Confidence            8776543              344578899999999875

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.58  E-value=3.1e-14  Score=129.78  Aligned_cols=112  Identities=19%  Similarity=0.168  Sum_probs=86.5

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC---CCEEEEEccccchHHhhccCCC
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL---SNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l---~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      ++.....+|||+|||+|.+++.+++++|. .+|+++|+|+.+++.|+++++.++.   .+++++.+|+.+.    .  .+
T Consensus       224 lp~~~~~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~----~--~~  296 (378)
T PRK15001        224 LPENLEGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG----V--EP  296 (378)
T ss_pred             CCcccCCeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc----C--CC
Confidence            33333468999999999999999999998 8999999999999999999987764   3689999988641    1  24


Q ss_pred             CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+||.|+.+.|-.....   ....+..++++.+.+.|+|||.++|
T Consensus       297 ~~fDlIlsNPPfh~~~~---~~~~ia~~l~~~a~~~LkpGG~L~i  338 (378)
T PRK15001        297 FRFNAVLCNPPFHQQHA---LTDNVAWEMFHHARRCLKINGELYI  338 (378)
T ss_pred             CCEEEEEECcCcccCcc---CCHHHHHHHHHHHHHhcccCCEEEE
Confidence            68999998765422110   0011235899999999999999875

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.57  E-value=2.4e-14  Score=122.86  Aligned_cols=114  Identities=24%  Similarity=0.332  Sum_probs=92.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ...+|||||||+|..++.++++.++ .+++|||+++++.+.|+++++.+++ ++++++++|+.++....   ...+||.|
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~---~~~~fD~I  119 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL---VFASFDLI  119 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc---cccccCEE
Confidence            3689999999999999999999888 8999999999999999999999888 57999999998754332   13469999


Q ss_pred             EEeCCC----------CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPD----------PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~----------~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.+.|-          ++....+++-....+++++...++|||||.+.|
T Consensus       120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~  168 (248)
T COG4123         120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF  168 (248)
T ss_pred             EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence            887542          222222333445678999999999999999875

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.56  E-value=1.8e-14  Score=122.02  Aligned_cols=100  Identities=26%  Similarity=0.366  Sum_probs=80.1

Q ss_pred             cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219          127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSIL  205 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~  205 (241)
                      +|||||||+|..+..+++.+++ .+++|+|+|+++++.++++++..++. +++++.+|+.+.     + .+++||.|+..
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-----~-~~~~fD~I~~~   74 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-----P-FPDTYDLVFGF   74 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-----C-CCCCCCEeehH
Confidence            6999999999999999999887 89999999999999999999887774 689999998641     1 24678988643


Q ss_pred             CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          206 CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       206 ~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ....+..+.        ..+++++.++|||||.+++
T Consensus        75 ~~l~~~~~~--------~~~l~~~~~~LkpgG~l~i  102 (224)
T smart00828       75 EVIHHIKDK--------MDLFSNISRHLKDGGHLVL  102 (224)
T ss_pred             HHHHhCCCH--------HHHHHHHHHHcCCCCEEEE
Confidence            211111111        4999999999999999875

>PRK04266 fibrillarin; Provisional

Probab=99.56  E-value=3.8e-14  Score=121.02  Aligned_cols=104  Identities=14%  Similarity=0.150  Sum_probs=81.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+|||+|.++..+++..+. +.|+|+|++++|++.+.+++++.  .|+.++.+|+.+.. ...+ .+..+|.|
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~-g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~-~~~~-l~~~~D~i  145 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEE-GVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPE-RYAH-VVEKVDVI  145 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcc-hhhh-ccccCCEE
Confidence            34789999999999999999998875 78999999999999888777643  68999999987521 0011 23569988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..++||..          ..+++++.++|||||.++|
T Consensus       146 ~~d~~~p~~~----------~~~L~~~~r~LKpGG~lvI  174 (226)
T PRK04266        146 YQDVAQPNQA----------EIAIDNAEFFLKDGGYLLL  174 (226)
T ss_pred             EECCCChhHH----------HHHHHHHHHhcCCCcEEEE
Confidence            8776665421          2678999999999999875

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.56  E-value=2.3e-14  Score=123.69  Aligned_cols=101  Identities=15%  Similarity=0.209  Sum_probs=79.1

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      +...+..+|||||||+|.++..+++.  + .+++|+|+|++|++.++++.     ....++.+|+.+     .+.++++|
T Consensus        38 l~~~~~~~vLDiGcG~G~~~~~l~~~--~-~~v~~~D~s~~~l~~a~~~~-----~~~~~~~~d~~~-----~~~~~~~f  104 (251)
T PRK10258         38 LPQRKFTHVLDAGCGPGWMSRYWRER--G-SQVTALDLSPPMLAQARQKD-----AADHYLAGDIES-----LPLATATF  104 (251)
T ss_pred             cCccCCCeEEEeeCCCCHHHHHHHHc--C-CeEEEEECCHHHHHHHHhhC-----CCCCEEEcCccc-----CcCCCCcE
Confidence            33334578999999999999998875  4 57999999999999998753     235688899875     33356789


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|+.+....|..+.        ..+++++.++|||||.++|
T Consensus       105 D~V~s~~~l~~~~d~--------~~~l~~~~~~Lk~gG~l~~  138 (251)
T PRK10258        105 DLAWSNLAVQWCGNL--------STALRELYRVVRPGGVVAF  138 (251)
T ss_pred             EEEEECchhhhcCCH--------HHHHHHHHHHcCCCeEEEE
Confidence            999877665554433        4899999999999999875

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.56  E-value=6.5e-14  Score=114.86  Aligned_cols=101  Identities=19%  Similarity=0.292  Sum_probs=87.5

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+++|||||||+.++.++...|. ++|++||.++++++..++|+++.+.+|++++.+|+.+.++.    .+ .+|.+
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~-~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~----~~-~~dai  106 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPS-GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD----LP-SPDAI  106 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC----CC-CCCEE
Confidence            35789999999999999999988888 99999999999999999999999999999999999875432    23 68888


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.-.-. .           +.+++.+...|||||+++.
T Consensus       107 FIGGg~~-i-----------~~ile~~~~~l~~ggrlV~  133 (187)
T COG2242         107 FIGGGGN-I-----------EEILEAAWERLKPGGRLVA  133 (187)
T ss_pred             EECCCCC-H-----------HHHHHHHHHHcCcCCeEEE
Confidence            8875532 1           5999999999999999874

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.55  E-value=8.6e-14  Score=116.31  Aligned_cols=103  Identities=14%  Similarity=0.214  Sum_probs=83.4

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEe
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      .++.+|||+|||+|.++..+++.. +. .+|+++|+++.+++.++++++..++ .++.++.+|+.+.++.    .+..+|
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~----~~~~~D  113 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT----INEKFD  113 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh----cCCCCC
Confidence            357899999999999999998865 44 6899999999999999999998884 6899999999764322    235789


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|++.......           ..+++.+.++|||||++++
T Consensus       114 ~V~~~~~~~~~-----------~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        114 RIFIGGGSEKL-----------KEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             EEEECCCcccH-----------HHHHHHHHHHcCCCcEEEE
Confidence            88875432211           4899999999999999874

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.54  E-value=3e-14  Score=124.93  Aligned_cols=103  Identities=20%  Similarity=0.306  Sum_probs=75.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||||||.|.+++.+++++ + ++|+||++|+++.+.+++++++.|+. ++++..+|..+     +   +..||.
T Consensus        61 ~~G~~vLDiGcGwG~~~~~~a~~~-g-~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-----~---~~~fD~  130 (273)
T PF02353_consen   61 KPGDRVLDIGCGWGGLAIYAAERY-G-CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-----L---PGKFDR  130 (273)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------S-SE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHc-C-cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-----c---CCCCCE
Confidence            458899999999999999999998 5 79999999999999999999999985 59999999875     2   348888


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+..-...+..      +...+.+++++.++|||||++++
T Consensus       131 IvSi~~~Ehvg------~~~~~~~f~~~~~~LkpgG~~~l  164 (273)
T PF02353_consen  131 IVSIEMFEHVG------RKNYPAFFRKISRLLKPGGRLVL  164 (273)
T ss_dssp             EEEESEGGGTC------GGGHHHHHHHHHHHSETTEEEEE
T ss_pred             EEEEechhhcC------hhHHHHHHHHHHHhcCCCcEEEE
Confidence            76542222221      11225999999999999999875

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.54  E-value=6.4e-14  Score=131.54  Aligned_cols=102  Identities=20%  Similarity=0.271  Sum_probs=80.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|..+..+++.. + ++|+|+|+|+++++.|+++....+ .+++++.+|+.+     .+.++++||.|+
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~-~-~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~-----~~~~~~~fD~I~  337 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENF-D-VHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTK-----KTYPDNSFDVIY  337 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhc-C-CEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCccc-----CCCCCCCEEEEE
Confidence            46799999999999999999876 5 689999999999999998765322 379999999875     233467899987


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ....-.|..++        ..++++++++|||||+++|
T Consensus       338 s~~~l~h~~d~--------~~~l~~~~r~LkpgG~l~i  367 (475)
T PLN02336        338 SRDTILHIQDK--------PALFRSFFKWLKPGGKVLI  367 (475)
T ss_pred             ECCcccccCCH--------HHHHHHHHHHcCCCeEEEE
Confidence            64333333332        4999999999999999875

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.54  E-value=7.4e-14  Score=121.88  Aligned_cols=107  Identities=17%  Similarity=0.239  Sum_probs=83.7

Q ss_pred             HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCC
Q 026219          119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      .+...++.+|||||||.|.+++.+|+++ + .+|+|+++|+++.+.+++++++.|++ +++++..|-.+     +   ++
T Consensus        67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~-v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd-----~---~e  136 (283)
T COG2230          67 KLGLKPGMTLLDIGCGWGGLAIYAAEEY-G-VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD-----F---EE  136 (283)
T ss_pred             hcCCCCCCEEEEeCCChhHHHHHHHHHc-C-CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc-----c---cc
Confidence            3444568999999999999999999998 4 68999999999999999999999997 89999888876     2   34


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .||.|+..-.-.+.-      ..-.+.+++.+.++|+|||.+++
T Consensus       137 ~fDrIvSvgmfEhvg------~~~~~~ff~~~~~~L~~~G~~ll  174 (283)
T COG2230         137 PFDRIVSVGMFEHVG------KENYDDFFKKVYALLKPGGRMLL  174 (283)
T ss_pred             ccceeeehhhHHHhC------cccHHHHHHHHHhhcCCCceEEE
Confidence            488765321100110      01125999999999999999874

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.53  E-value=1.6e-13  Score=117.74  Aligned_cols=111  Identities=22%  Similarity=0.278  Sum_probs=86.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...+|||+|||+|.++..+++.+++ ..++|+|+++.+++.++++++..++.+++++.+|+.+.    .  .++++|.|+
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~--~~~~fD~Vi  159 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP----L--PGGKFDLIV  159 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----C--cCCceeEEE
Confidence            3468999999999999999999887 89999999999999999999988888899999998752    1  257899998


Q ss_pred             EeCCCCchhhhh----h----h----------cccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKH----H----K----------RRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~----~----~----------~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.|-......+    .    +          .......+++++.++|+|||.+++
T Consensus       160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~  215 (251)
T TIGR03534       160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL  215 (251)
T ss_pred             ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence            865421100000    0    0          001235789999999999999875

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.53  E-value=6.1e-14  Score=122.77  Aligned_cols=93  Identities=23%  Similarity=0.323  Sum_probs=74.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCC--cEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDS--GNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~--~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ...+|||||||+|.++..+++..+..  ..++|+|+|++|++.|+++     .+++.+.++|+.+     .+..+++||.
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~-----lp~~~~sfD~  154 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHR-----LPFADQSLDA  154 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeeccc-----CCCcCCceeE
Confidence            35789999999999999999887631  3799999999999998764     2578999999876     3445789999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+..+. |              ..++++.|+|||||.+++
T Consensus       155 I~~~~~-~--------------~~~~e~~rvLkpgG~li~  179 (272)
T PRK11088        155 IIRIYA-P--------------CKAEELARVVKPGGIVIT  179 (272)
T ss_pred             EEEecC-C--------------CCHHHHHhhccCCCEEEE
Confidence            876653 2              446789999999999874

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.53  E-value=7.2e-14  Score=118.43  Aligned_cols=99  Identities=20%  Similarity=0.347  Sum_probs=81.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..+|||||||+|.++..+++.++. ..++|+|+++++++.++++..    +++.++.+|+.+     .+.++.++|+|+.
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~-----~~~~~~~fD~vi~  104 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLS----ENVQFICGDAEK-----LPLEDSSFDLIVS  104 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcC----CCCeEEecchhh-----CCCCCCceeEEEE
Confidence            468999999999999999999887 789999999999999887653    478899999975     2334678999987


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .....|..+.        ..+++++.++|+|||.+++
T Consensus       105 ~~~l~~~~~~--------~~~l~~~~~~L~~~G~l~~  133 (240)
T TIGR02072       105 NLALQWCDDL--------SQALSELARVLKPGGLLAF  133 (240)
T ss_pred             hhhhhhccCH--------HHHHHHHHHHcCCCcEEEE
Confidence            7654444333        4899999999999999875

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.52  E-value=1.2e-13  Score=121.78  Aligned_cols=102  Identities=16%  Similarity=0.174  Sum_probs=79.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +..+|||||||+|..+..++++  + .+|+|+|+|+.+++.++++++..++ ++++...|+..     .. .+++||.|+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~--g-~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~-----~~-~~~~fD~I~  189 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL--G-FDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINS-----AS-IQEEYDFIL  189 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhc-----cc-ccCCccEEE
Confidence            3469999999999999999986  4 6899999999999999999988887 79999888864     11 257899886


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+...      .....+++++.++|+|||.+++
T Consensus       190 ~~~vl~~l~~------~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        190 STVVLMFLNR------ERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             EcchhhhCCH------HHHHHHHHHHHHhcCCCcEEEE
Confidence            5543211110      0114899999999999998653

>PRK08317 hypothetical protein; Provisional

Probab=99.52  E-value=2.1e-13  Score=115.40  Aligned_cols=104  Identities=23%  Similarity=0.283  Sum_probs=81.1

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||+|||+|.++..+++.+ +. ++++|+|+|+.+++.++++.. ....+++++.+|+.+     .+..++.+|.
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~-----~~~~~~~~D~   90 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADG-----LPFPDGSFDA   90 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhh-CCCCceEEEeccccc-----CCCCCCCceE
Confidence            346799999999999999999987 56 799999999999999988732 233579999999875     2234578998


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+......+..+.        ..+++++.++|||||.+++
T Consensus        91 v~~~~~~~~~~~~--------~~~l~~~~~~L~~gG~l~~  122 (241)
T PRK08317         91 VRSDRVLQHLEDP--------ARALAEIARVLRPGGRVVV  122 (241)
T ss_pred             EEEechhhccCCH--------HHHHHHHHHHhcCCcEEEE
Confidence            8765433222222        4899999999999999864

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.52  E-value=8.8e-14  Score=125.15  Aligned_cols=101  Identities=14%  Similarity=0.066  Sum_probs=80.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .+.+|||||||+|.++..+++..++ .+++|+|+|++|++.|+++..   ..+++++.+|+.+     .+..+++||.|+
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~-----lp~~~~sFDvVI  183 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAED-----LPFPTDYADRYV  183 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHh-----CCCCCCceeEEE
Confidence            3579999999999999999998877 789999999999999998753   3478899999975     333467899887


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ....-.+..+.        +.++++++++|||||++++
T Consensus       184 s~~~L~~~~d~--------~~~L~e~~rvLkPGG~LvI  213 (340)
T PLN02490        184 SAGSIEYWPDP--------QRGIKEAYRVLKIGGKACL  213 (340)
T ss_pred             EcChhhhCCCH--------HHHHHHHHHhcCCCcEEEE
Confidence            65433222222        3899999999999999864

>PRK06922 hypothetical protein; Provisional

Probab=99.51  E-value=1.1e-13  Score=132.33  Aligned_cols=113  Identities=16%  Similarity=0.190  Sum_probs=83.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|..+..+++.+|+ .+++|+|+|+.|++.|+++....+ .+++++++|+.+ ++..  ..++++|.|+
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~-~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~d-Lp~~--fedeSFDvVV  492 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETED-KRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAIN-LSSS--FEKESVDTIV  492 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHh-Cccc--cCCCCEEEEE
Confidence            3689999999999999999999988 899999999999999998876544 368899999875 2211  2468899987


Q ss_pred             EeCCCCchhh-----hhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKK-----KHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~-----~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..++..+...     ...-.......++++++++|||||.++|
T Consensus       493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII  535 (677)
T PRK06922        493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII  535 (677)
T ss_pred             EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence            6543221100     0000001225899999999999999975

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.50  E-value=2.3e-13  Score=122.02  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=77.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~-l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||||||+|.++..+++.++.  .|+|+|+|+.++..++...+..+ ..++.++.+|+.+     ++. ++.||.
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~-----lp~-~~~FD~  192 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ-----LPA-LKAFDT  192 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH-----CCC-cCCcCE
Confidence            45789999999999999999998665  69999999999876554333322 2479999999875     332 577998


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+....-.|..+.        ..+++++++.|+|||.++|
T Consensus       193 V~s~~vl~H~~dp--------~~~L~~l~~~LkpGG~lvl  224 (322)
T PRK15068        193 VFSMGVLYHRRSP--------LDHLKQLKDQLVPGGELVL  224 (322)
T ss_pred             EEECChhhccCCH--------HHHHHHHHHhcCCCcEEEE
Confidence            8754322222222        4899999999999999875

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.50  E-value=3e-13  Score=119.25  Aligned_cols=110  Identities=16%  Similarity=0.187  Sum_probs=85.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ..+|||+|||+|.+++.+++..++ .+|+|+|+|+.+++.|++|++.+++. +++++.+|+.+.    +  ++..||.|+
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~--~~~~fD~Iv  194 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L--PGRKYDLIV  194 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c--CCCCccEEE
Confidence            468999999999999999999887 89999999999999999999988874 699999998652    2  245799988


Q ss_pred             EeCCCCc-------hhhhhhh----------cccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPH-------FKKKHHK----------RRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~-------~~~~~~~----------~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.|--.       .+.-+++          ....++.+++.+.+.|+|||++++
T Consensus       195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~  249 (284)
T TIGR03533       195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV  249 (284)
T ss_pred             ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            8744210       0000001          112457889999999999999875

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.50  E-value=3.2e-13  Score=121.98  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=85.2

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      +..+...+|||+|||+|.++..+++++|+ .+|+++|+|+.+++.++++++.+++. .+++.+|+.+.       .++.|
T Consensus       192 l~~~~~g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~-------~~~~f  262 (342)
T PRK09489        192 LTPHTKGKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD-------IKGRF  262 (342)
T ss_pred             ccccCCCeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc-------cCCCc
Confidence            43333568999999999999999999988 79999999999999999999988764 57788887541       25789


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|+.+.|-.+...   ......+.+++++.+.|||||.++|
T Consensus       263 DlIvsNPPFH~g~~---~~~~~~~~~i~~a~~~LkpgG~L~i  301 (342)
T PRK09489        263 DMIISNPPFHDGIQ---TSLDAAQTLIRGAVRHLNSGGELRI  301 (342)
T ss_pred             cEEEECCCccCCcc---ccHHHHHHHHHHHHHhcCcCCEEEE
Confidence            99998765432100   0011236999999999999999875

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.49  E-value=3.2e-13  Score=115.90  Aligned_cols=106  Identities=16%  Similarity=0.267  Sum_probs=87.5

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC-CCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS-YPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~-~~~~~d~V  202 (241)
                      ..+|||||||+|..++.+++..+..++++++|+++++++.|++++++.++. +++++.+|+.+.++.+.+. .++.||.|
T Consensus        69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V  148 (234)
T PLN02781         69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA  148 (234)
T ss_pred             CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence            578999999999999999987664489999999999999999999999985 6999999999877665432 24689998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++....+           .+..+++.+.++|+|||.+++
T Consensus       149 fiDa~k~-----------~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        149 FVDADKP-----------NYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             EECCCHH-----------HHHHHHHHHHHhcCCCeEEEE
Confidence            8764322           124889999999999999874

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.49  E-value=3.2e-13  Score=110.93  Aligned_cols=107  Identities=18%  Similarity=0.229  Sum_probs=81.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.++..+++..+   +|+|+|+|+++++.++++++.++. +++++.+|+.+.       .++++|.|+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-------~~~~fD~Vi   87 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKG-------VRGKFDVIL   87 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccc-------cCCcccEEE
Confidence            357899999999999999998754   699999999999999999987775 689999998651       245899988


Q ss_pred             EeCCCCchhhhhh-------------hcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHH-------------KRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~-------------~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.|-........             ..+.+.+.+++++.++|||||++++
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~  138 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL  138 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence            7754311110000             0112356899999999999999864

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.49  E-value=7.1e-14  Score=113.69  Aligned_cols=103  Identities=28%  Similarity=0.389  Sum_probs=77.6

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .++|||+|||+|.++..|++..=. ..++|+|.|+++++.|+..++..+.+| |+|.+.|+.+.     .+.+++||+|.
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-----~~~~~qfdlvl  141 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-----DFLSGQFDLVL  141 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-----cccccceeEEe
Confidence            459999999999999999987433 369999999999999999999999887 99999999862     22345566552


Q ss_pred             --------EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 --------ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 --------~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                              ...|+. +.    .|+.   .++..+.++|+|||+++|
T Consensus       142 DKGT~DAisLs~d~-~~----~r~~---~Y~d~v~~ll~~~gifvI  179 (227)
T KOG1271|consen  142 DKGTLDAISLSPDG-PV----GRLV---VYLDSVEKLLSPGGIFVI  179 (227)
T ss_pred             ecCceeeeecCCCC-cc----ccee---eehhhHhhccCCCcEEEE
Confidence                    122331 11    1223   567778888999999986

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.48  E-value=1.7e-13  Score=116.14  Aligned_cols=114  Identities=13%  Similarity=0.111  Sum_probs=75.4

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH------------hCCCCEEEEEc
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE------------LALSNIHFLFA  182 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~------------~~l~ni~~~~~  182 (241)
                      ++...+..+++.+|||+|||.|..+..||++  + ..|+|+|+|+.+++.+.+....            ....+++++++
T Consensus        25 ~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~--G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  101 (213)
T TIGR03840        25 KHWPALGLPAGARVFVPLCGKSLDLAWLAEQ--G-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCG  101 (213)
T ss_pred             HHHHhhCCCCCCeEEEeCCCchhHHHHHHhC--C-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEc
Confidence            4444432234689999999999999999987  4 6799999999999986442110            01136899999


Q ss_pred             cccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          183 NASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       183 D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+.+......+.+|..+|..+++...+  ..+        ..+++.+.++|||||++++
T Consensus       102 D~~~~~~~~~~~fD~i~D~~~~~~l~~--~~R--------~~~~~~l~~lLkpgG~~ll  150 (213)
T TIGR03840       102 DFFALTAADLGPVDAVYDRAALIALPE--EMR--------QRYAAHLLALLPPGARQLL  150 (213)
T ss_pred             cCCCCCcccCCCcCEEEechhhccCCH--HHH--------HHHHHHHHHHcCCCCeEEE
Confidence            997632111122344555443332222  122        4899999999999997553

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK05785 hypothetical protein; Provisional

Probab=99.48  E-value=2.6e-13  Score=115.85  Aligned_cols=90  Identities=7%  Similarity=-0.004  Sum_probs=72.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||||||||.++..+++.+ + .+|+|+|+|++|++.|+++        ..++++|+.+     ++.++++||.|++
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~-~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~-----lp~~d~sfD~v~~  116 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-K-YYVVALDYAENMLKMNLVA--------DDKVVGSFEA-----LPFRDKSFDVVMS  116 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-C-CEEEEECCCHHHHHHHHhc--------cceEEechhh-----CCCCCCCEEEEEe
Confidence            6799999999999999999987 4 6899999999999998753        1356788875     4556799999988


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCC
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG  237 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG  237 (241)
                      .+.-.+..+.        ++++++++|+|||.+
T Consensus       117 ~~~l~~~~d~--------~~~l~e~~RvLkp~~  141 (226)
T PRK05785        117 SFALHASDNI--------EKVIAEFTRVSRKQV  141 (226)
T ss_pred             cChhhccCCH--------HHHHHHHHHHhcCce
Confidence            7755444333        489999999999954

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.47  E-value=7.1e-13  Score=112.50  Aligned_cols=105  Identities=19%  Similarity=0.311  Sum_probs=82.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.++..+++..+...+++|+|+++.+++.+++++...+. .++.++.+|+.+.     ...++.+|+|
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~I  125 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-----PFPDNSFDAV  125 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC-----CCCCCCccEE
Confidence            357999999999999999999887227899999999999999998876544 4689999999762     2235779988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..+...+..+.        ..+++++.++|+|||.+++
T Consensus       126 ~~~~~l~~~~~~--------~~~l~~~~~~L~~gG~li~  156 (239)
T PRK00216        126 TIAFGLRNVPDI--------DKALREMYRVLKPGGRLVI  156 (239)
T ss_pred             EEecccccCCCH--------HHHHHHHHHhccCCcEEEE
Confidence            765433222221        4899999999999998864

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=5.2e-13  Score=117.03  Aligned_cols=113  Identities=17%  Similarity=0.234  Sum_probs=89.6

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      +.+....+.+|||+|||.|.+++.+++.+|. .+++-+|+|..+++.+++|++.++.++..++..|..+.       ..+
T Consensus       152 ~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-------v~~  223 (300)
T COG2813         152 ETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-------VEG  223 (300)
T ss_pred             HhCCccCCCcEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-------ccc
Confidence            4444444569999999999999999999998 89999999999999999999999988877778887541       134


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +||.|+.|.|-.   +.+..-..+.+++++...+.|++||.++|
T Consensus       224 kfd~IisNPPfh---~G~~v~~~~~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         224 KFDLIISNPPFH---AGKAVVHSLAQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             cccEEEeCCCcc---CCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence            899998886543   12211222345999999999999999875

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.47  E-value=7.2e-13  Score=111.70  Aligned_cols=100  Identities=18%  Similarity=0.232  Sum_probs=80.3

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      ....++.+|||||||+|.++..+++..   .+++++|+++++++.+++++++.++.+++++.+|+.+.+    . ..+.|
T Consensus        74 l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~f  145 (212)
T PRK00312         74 LELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW----P-AYAPF  145 (212)
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC----C-cCCCc
Confidence            333456899999999999999888874   369999999999999999999888888999999986521    1 23679


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|++....+              .+.+.+.+.|+|||.+++
T Consensus       146 D~I~~~~~~~--------------~~~~~l~~~L~~gG~lv~  173 (212)
T PRK00312        146 DRILVTAAAP--------------EIPRALLEQLKEGGILVA  173 (212)
T ss_pred             CEEEEccCch--------------hhhHHHHHhcCCCcEEEE
Confidence            9988765432              445678899999999875

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.47  E-value=1.3e-13  Score=115.05  Aligned_cols=105  Identities=22%  Similarity=0.237  Sum_probs=81.5

Q ss_pred             hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC
Q 026219          116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      .....+......|+|+|||+|+.+..|++++|+ ..++|||-|++|++.|+++     +.|++|..+|+.++    .  +
T Consensus        22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w----~--p   89 (257)
T COG4106          22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTW----K--P   89 (257)
T ss_pred             HHhhCCccccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHh-----CCCCceecccHhhc----C--C
Confidence            333333334578999999999999999999999 9999999999999999663     47899999999863    2  3


Q ss_pred             CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +...|+++.+-...|..+-        ..++..+...|.|||.+-
T Consensus        90 ~~~~dllfaNAvlqWlpdH--------~~ll~rL~~~L~Pgg~LA  126 (257)
T COG4106          90 EQPTDLLFANAVLQWLPDH--------PELLPRLVSQLAPGGVLA  126 (257)
T ss_pred             CCccchhhhhhhhhhcccc--------HHHHHHHHHhhCCCceEE
Confidence            4566776555433343322        399999999999999875

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.47  E-value=9.4e-13  Score=110.61  Aligned_cols=103  Identities=21%  Similarity=0.319  Sum_probs=81.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.++..+++..+...+++|+|+++.+++.++++..  ...+++++.+|+.+.     +..++.+|.|+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~-----~~~~~~~D~i~  111 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEAL-----PFEDNSFDAVT  111 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcC-----CCCCCcEEEEE
Confidence            46899999999999999999988643589999999999999998765  335789999999762     22356899887


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+...+..+.        ..+++++.++|+|||++++
T Consensus       112 ~~~~~~~~~~~--------~~~l~~~~~~L~~gG~l~~  141 (223)
T TIGR01934       112 IAFGLRNVTDI--------QKALREMYRVLKPGGRLVI  141 (223)
T ss_pred             EeeeeCCcccH--------HHHHHHHHHHcCCCcEEEE
Confidence            66543333222        4899999999999999874

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.46  E-value=9.6e-13  Score=115.96  Aligned_cols=105  Identities=14%  Similarity=0.151  Sum_probs=78.1

Q ss_pred             CCCcEEEEcCCccHH--HHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH-hCCC-CEEEEEccccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSGSGRF--LIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-LALS-NIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~--~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~-~~l~-ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      ...+|+|||||.|.+  +..+++.+|+ +.++|+|+++++++.|++.++. .++. +++|..+|+.+.     ....+.|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~-~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-----~~~l~~F  196 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPT-TSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV-----TESLKEY  196 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc-----ccccCCc
Confidence            468999999998844  3334456788 8999999999999999999965 6774 599999999862     1113678


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+|++..--.|.+..+       +.+++.+.+.|+|||.+++
T Consensus       197 DlVF~~ALi~~dk~~k-------~~vL~~l~~~LkPGG~Lvl  231 (296)
T PLN03075        197 DVVFLAALVGMDKEEK-------VKVIEHLGKHMAPGALLML  231 (296)
T ss_pred             CEEEEecccccccccH-------HHHHHHHHHhcCCCcEEEE
Confidence            9887652111111111       5999999999999999875

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.46  E-value=7.1e-13  Score=118.12  Aligned_cols=109  Identities=17%  Similarity=0.199  Sum_probs=84.8

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      .+|||+|||+|.+++.+++.+|+ .+|+|+|+|+.+++.|++|++.+++. +++++++|+.+.    +  ++.+||+|+.
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l--~~~~fDlIvs  207 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----L--PGRRYDLIVS  207 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----C--CCCCccEEEE
Confidence            68999999999999999999988 89999999999999999999988874 699999998652    2  2457999887


Q ss_pred             eCCCCc-------hhhhhhh----------cccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPH-------FKKKHHK----------RRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~-------~~~~~~~----------~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.|--.       ...-.++          ...+++.+++.+.+.|+|||.+++
T Consensus       208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~  261 (307)
T PRK11805        208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV  261 (307)
T ss_pred             CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence            743210       0000001          112457899999999999999875

>PRK14967 putative methyltransferase; Provisional

Probab=99.45  E-value=1.1e-12  Score=111.57  Aligned_cols=109  Identities=19%  Similarity=0.224  Sum_probs=81.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.++..+++.. . .+++|+|+|+.+++.++++++.++. ++.++.+|+.+.    +  .+..||.|+
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~~-~-~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~----~--~~~~fD~Vi  106 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAAG-A-GSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA----V--EFRPFDVVV  106 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh----c--cCCCeeEEE
Confidence            46799999999999999998863 3 4899999999999999999988776 688999998652    2  357899998


Q ss_pred             EeCCCC-chhh------------hhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDP-HFKK------------KHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~-~~~~------------~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.|-. ....            .........+.+++++.++|||||++++
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~  157 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL  157 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            874321 0000            0001112346789999999999999874

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.45  E-value=8.5e-13  Score=116.32  Aligned_cols=109  Identities=18%  Similarity=0.260  Sum_probs=84.7

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      .+|||+|||+|.+++.++..+++ .+|+|+|+|+++++.|++|++.+++. +++++.+|+.+.    +  .+..||+|+.
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~--~~~~fDlIvs  188 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----L--AGQKIDIIVS  188 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----C--cCCCccEEEE
Confidence            68999999999999999999887 79999999999999999999988885 499999998652    1  2347898887


Q ss_pred             eCCCCchhh-------hhhh----------cccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKK-------KHHK----------RRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~-------~~~~----------~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.|-.....       ..++          ....++.+++.+.++|+|||.+++
T Consensus       189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~  242 (284)
T TIGR00536       189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC  242 (284)
T ss_pred             CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence            643210000       0001          112567899999999999999875

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14968 putative methyltransferase; Provisional

Probab=99.45  E-value=1.5e-12  Score=106.85  Aligned_cols=109  Identities=18%  Similarity=0.273  Sum_probs=81.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC--EEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN--IHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n--i~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+|||+|||+|.++..++++  + .+++|+|+|+++++.++++++.+++.+  +.++++|..+.    +  .+..+|.
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~--~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~d~   93 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKN--G-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----F--RGDKFDV   93 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhh--c-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----c--cccCceE
Confidence            4678999999999999999998  4 689999999999999999998887755  89999998652    1  2347998


Q ss_pred             EEEeCCCCc-hhhhh------------hhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPH-FKKKH------------HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~-~~~~~------------~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+.+.|... .....            ...+.....+++++.++|||||.+++
T Consensus        94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~  146 (188)
T PRK14968         94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL  146 (188)
T ss_pred             EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence            887644210 00000            00112346789999999999998864

>TIGR00452 methyltransferase, putative

Probab=99.44  E-value=1e-12  Score=117.26  Aligned_cols=104  Identities=13%  Similarity=0.049  Sum_probs=75.2

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCCEEEEEccccchHHhhccCCCCcEe
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~-l~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ..++.+|||||||+|.++..++..++.  .|+|||+|+.|+..++...+..+ ..++.++.+|+.+     ++ +...||
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~-----lp-~~~~FD  190 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ-----LH-ELYAFD  190 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH-----CC-CCCCcC
Confidence            345789999999999999999887654  79999999999876544322222 2468888888765     22 135789


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+......|..+.        ..+|++++++|||||.|++
T Consensus       191 ~V~s~gvL~H~~dp--------~~~L~el~r~LkpGG~Lvl  223 (314)
T TIGR00452       191 TVFSMGVLYHRKSP--------LEHLKQLKHQLVIKGELVL  223 (314)
T ss_pred             EEEEcchhhccCCH--------HHHHHHHHHhcCCCCEEEE
Confidence            88654332222222        4899999999999999975

Known examples to date are restricted to the proteobacteria.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.44  E-value=1.4e-12  Score=116.81  Aligned_cols=99  Identities=18%  Similarity=0.258  Sum_probs=79.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++..+..+.|+|+|+++++++.|++++++.+.+|+.++.+|+.+..+     ..+.+|.|+
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-----~~~~fD~Ii  154 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-----EFAPYDVIF  154 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-----ccCCccEEE
Confidence            468999999999999999999875325799999999999999999998888899999999865211     135699988


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +....+              .....+.+.|+|||++++
T Consensus       155 ~~~g~~--------------~ip~~~~~~LkpgG~Lvv  178 (322)
T PRK13943        155 VTVGVD--------------EVPETWFTQLKEGGRVIV  178 (322)
T ss_pred             ECCchH--------------HhHHHHHHhcCCCCEEEE
Confidence            765433              334457789999999764

>PRK04457 spermidine synthase; Provisional

Probab=99.44  E-value=8.8e-13  Score=115.04  Aligned_cols=109  Identities=14%  Similarity=0.125  Sum_probs=85.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +..+|||||||+|.++..+++.+|+ .+++++|+++++++.|++++...+. ++++++.+|+.+.+..    .+..+|.|
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~----~~~~yD~I  140 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPD-TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV----HRHSTDVI  140 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh----CCCCCCEE
Confidence            4578999999999999999999988 8999999999999999998765443 5799999999875432    24679988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++...+....    ........+++++.+.|+|||.+++
T Consensus       141 ~~D~~~~~~~----~~~l~t~efl~~~~~~L~pgGvlvi  175 (262)
T PRK04457        141 LVDGFDGEGI----IDALCTQPFFDDCRNALSSDGIFVV  175 (262)
T ss_pred             EEeCCCCCCC----ccccCcHHHHHHHHHhcCCCcEEEE
Confidence            8764221100    0112346999999999999999875

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.44  E-value=1.1e-12  Score=110.43  Aligned_cols=106  Identities=21%  Similarity=0.293  Sum_probs=88.6

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCC-CCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSY-PGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~-~~~~d~V  202 (241)
                      ..+|||||||+|..++.+++..|++++|+.+|++++..+.|++++++.|+. +++++.+|+.+.++.+.... .+.||.|
T Consensus        46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V  125 (205)
T PF01596_consen   46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV  125 (205)
T ss_dssp             -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred             CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence            478999999999999999998875589999999999999999999999984 79999999998877765432 4689999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++...-.    .       +..+++.+.++|+|||.|++
T Consensus       126 FiDa~K~----~-------y~~y~~~~~~ll~~ggvii~  153 (205)
T PF01596_consen  126 FIDADKR----N-------YLEYFEKALPLLRPGGVIIA  153 (205)
T ss_dssp             EEESTGG----G-------HHHHHHHHHHHEEEEEEEEE
T ss_pred             EEccccc----c-------hhhHHHHHhhhccCCeEEEE
Confidence            9875321    1       25889999999999999874

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.43  E-value=2e-12  Score=114.93  Aligned_cols=102  Identities=15%  Similarity=0.168  Sum_probs=79.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +..+|||||||+|.++..+++++|+ .+++++|+ +.+++.+++++++.++. +++++.+|+.+.     + ++. .|.|
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~-----~-~~~-~D~v  219 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-----S-YPE-ADAV  219 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC-----C-CCC-CCEE
Confidence            4579999999999999999999998 89999998 78999999999988874 699999998641     1 122 4766


Q ss_pred             EEeCCCC-chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDP-HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~-~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..... |.++.       ...+++++++.|+|||+++|
T Consensus       220 ~~~~~lh~~~~~~-------~~~il~~~~~~L~pgG~l~i  252 (306)
T TIGR02716       220 LFCRILYSANEQL-------STIMCKKAFDAMRSGGRLLI  252 (306)
T ss_pred             EeEhhhhcCChHH-------HHHHHHHHHHhcCCCCEEEE
Confidence            5443211 22111       14799999999999999975

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.43  E-value=1.7e-12  Score=114.64  Aligned_cols=98  Identities=17%  Similarity=0.189  Sum_probs=77.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.+++.+++.. . .+|+|+|+|+.+++.|+++++.+++. ++.+...|...       ..++.||.|
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g-~-~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~-------~~~~~fDlV  229 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLG-A-AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ-------PIEGKADVI  229 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc-------ccCCCceEE
Confidence            46899999999999999888753 3 48999999999999999999988775 46666665322       125689999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.+.....           ...+++++.++|||||.+++
T Consensus       230 van~~~~~-----------l~~ll~~~~~~LkpgG~li~  257 (288)
T TIGR00406       230 VANILAEV-----------IKELYPQFSRLVKPGGWLIL  257 (288)
T ss_pred             EEecCHHH-----------HHHHHHHHHHHcCCCcEEEE
Confidence            87754221           14889999999999999875

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=8e-13  Score=110.51  Aligned_cols=107  Identities=20%  Similarity=0.324  Sum_probs=86.6

Q ss_pred             hhhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhc
Q 026219          113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLV  192 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~  192 (241)
                      ...+.+.+...++.+|||||||+|..+..|++...   +|+.+|+.++..+.|++|++..|+.|+.++++|....++   
T Consensus        61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~---  134 (209)
T COG2518          61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP---  134 (209)
T ss_pred             HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC---
Confidence            34666666666689999999999999999999853   699999999999999999999999999999999986432   


Q ss_pred             cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                        ..+.||.|++.-.-+.              +=+.+.+.|||||++++
T Consensus       135 --~~aPyD~I~Vtaaa~~--------------vP~~Ll~QL~~gGrlv~  167 (209)
T COG2518         135 --EEAPYDRIIVTAAAPE--------------VPEALLDQLKPGGRLVI  167 (209)
T ss_pred             --CCCCcCEEEEeeccCC--------------CCHHHHHhcccCCEEEE
Confidence              1378999887664431              12236788999999875

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.43  E-value=1e-12  Score=118.10  Aligned_cols=110  Identities=14%  Similarity=0.143  Sum_probs=84.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.+++.++..  + ..++|+|+++.|++.+++|++..++.++.++++|+.+     .+..++.+|.|+
T Consensus       182 ~g~~vLDp~cGtG~~lieaa~~--~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~-----l~~~~~~~D~Iv  253 (329)
T TIGR01177       182 EGDRVLDPFCGTGGFLIEAGLM--G-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK-----LPLSSESVDAIA  253 (329)
T ss_pred             CcCEEEECCCCCCHHHHHHHHh--C-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc-----CCcccCCCCEEE
Confidence            4678999999999999887765  4 5799999999999999999999998888999999986     233357899998


Q ss_pred             EeCCCCchh-hhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFK-KKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~-~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.|-.... ........++..+++++.++|||||++++
T Consensus       254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~  292 (329)
T TIGR01177       254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY  292 (329)
T ss_pred             ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence            875421000 00000112357999999999999998864

This family is found exclusively in the Archaea.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.42  E-value=1.2e-12  Score=108.85  Aligned_cols=102  Identities=17%  Similarity=0.270  Sum_probs=76.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +..++||+|||.|..++.||++  + ..|+++|+|+..++.+++.+++.+++ ++....|+.+     .. ++..+|.|+
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~--G-~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~-----~~-~~~~yD~I~   99 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQ--G-FDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLND-----FD-FPEEYDFIV   99 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHT--T--EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCC-----BS--TTTEEEEE
T ss_pred             CCCcEEEcCCCCcHHHHHHHHC--C-CeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchh-----cc-ccCCcCEEE
Confidence            4689999999999999999998  5 67999999999999999988888875 9999999976     22 357799876


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+.      .+...+++++.+...++|||.+++
T Consensus       100 st~v~~fL------~~~~~~~i~~~m~~~~~pGG~~li  131 (192)
T PF03848_consen  100 STVVFMFL------QRELRPQIIENMKAATKPGGYNLI  131 (192)
T ss_dssp             EESSGGGS-------GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEeccC------CHHHHHHHHHHHHhhcCCcEEEEE
Confidence            43221111      011235899999999999998764

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.42  E-value=2.3e-12  Score=112.27  Aligned_cols=111  Identities=20%  Similarity=0.261  Sum_probs=83.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|..+..+++..+. ..++|+|+|+.+++.|+++++.....+++++.+|+.+.    .  .+++||.|+
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~----~--~~~~fD~Iv  180 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP----L--PGGRFDLIV  180 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc----C--CCCceeEEE
Confidence            4678999999999999999999887 89999999999999999998733335799999998652    1  247899988


Q ss_pred             EeCCCCchh--------hhhh----------hcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFK--------KKHH----------KRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~--------~~~~----------~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.|-....        ...+          .....+..+++++.++|+|||.++|
T Consensus       181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~  236 (275)
T PRK09328        181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL  236 (275)
T ss_pred             ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence            765421000        0000          0112346889999999999999875

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.42  E-value=2.8e-13  Score=115.17  Aligned_cols=109  Identities=13%  Similarity=0.097  Sum_probs=73.2

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH------------hCCCCEEEEEc
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE------------LALSNIHFLFA  182 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~------------~~l~ni~~~~~  182 (241)
                      ++......+++.+|||+|||.|..+..||++  + .+|+|||+|+.+++.+.+....            ....+++++++
T Consensus        28 ~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~--G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~  104 (218)
T PRK13255         28 KYWPALALPAGSRVLVPLCGKSLDMLWLAEQ--G-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCG  104 (218)
T ss_pred             HHHHhhCCCCCCeEEEeCCCChHhHHHHHhC--C-CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEEC
Confidence            4443332234689999999999999999986  5 6899999999999987432100            01136889999


Q ss_pred             cccchHHhhccCCCCcEeEEE----EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          183 NASVSFKQLVSSYPGPLMLVS----ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       183 D~~~~~~~~~~~~~~~~d~V~----~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |+.+.....    .+.||.|+    ++...+  ..+        ..+++.+.++|+|||+++
T Consensus       105 D~~~l~~~~----~~~fd~v~D~~~~~~l~~--~~R--------~~~~~~l~~lL~pgG~~~  152 (218)
T PRK13255        105 DFFALTAAD----LADVDAVYDRAALIALPE--EMR--------ERYVQQLAALLPAGCRGL  152 (218)
T ss_pred             cccCCCccc----CCCeeEEEehHhHhhCCH--HHH--------HHHHHHHHHHcCCCCeEE
Confidence            998632111    13456553    222222  112        499999999999999744

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.42  E-value=2e-12  Score=118.69  Aligned_cols=111  Identities=18%  Similarity=0.176  Sum_probs=84.6

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||+|||+|.+++.+++..++ .+++|+|+|+++++.|++|++.++. +++++++|+.+..   .+ .++.||.|+.
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~---l~-~~~~FDLIVS  325 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTD---MP-SEGKWDIIVS  325 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccc---cc-cCCCccEEEE
Confidence            568999999999999999998888 8999999999999999999988775 7999999986521   11 1357999988


Q ss_pred             eCCC-Cchhhh----------------hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPD-PHFKKK----------------HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~-~~~~~~----------------~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.|- +..+..                ......+++.+++.+.+.|+|||.+++
T Consensus       326 NPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil  379 (423)
T PRK14966        326 NPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL  379 (423)
T ss_pred             CCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence            7642 100000                011123567899999999999999864

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.42  E-value=1.7e-12  Score=113.28  Aligned_cols=112  Identities=18%  Similarity=0.175  Sum_probs=84.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|..+..+++...+.+.|+++|+++.+++.+++++++.++.|+.++..|+...     ....+.||.|+
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~-----~~~~~~fD~Vl  145 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF-----GAAVPKFDAIL  145 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh-----hhhccCCCEEE
Confidence            4689999999999999999998754368999999999999999999999988899999998652     11235689888


Q ss_pred             EeCCCC----chhhhhhh-----c-----ccchHHHHHHHHhccccCCEEE
Q 026219          204 ILCPDP----HFKKKHHK-----R-----RVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       204 ~~~~~~----~~~~~~~~-----~-----r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +.-|-.    +.+++..+     +     ...+..+|+.+.++|||||+++
T Consensus       146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv  196 (264)
T TIGR00446       146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV  196 (264)
T ss_pred             EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            754321    00000000     0     1145679999999999999886

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.41  E-value=1.3e-12  Score=110.25  Aligned_cols=106  Identities=21%  Similarity=0.350  Sum_probs=80.4

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      .+.+.-.++.+|||||||+|.++..+++.....+.|++||+.+.+++.|+++++..+..|+.++++|....++.     .
T Consensus        65 l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~-----~  139 (209)
T PF01135_consen   65 LEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE-----E  139 (209)
T ss_dssp             HHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG-----G
T ss_pred             HHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc-----C
Confidence            33344445799999999999999999998644368999999999999999999999999999999999764321     3


Q ss_pred             CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.||.|++...-+              .+-+.+.+.|++||++++
T Consensus       140 apfD~I~v~~a~~--------------~ip~~l~~qL~~gGrLV~  170 (209)
T PF01135_consen  140 APFDRIIVTAAVP--------------EIPEALLEQLKPGGRLVA  170 (209)
T ss_dssp             -SEEEEEESSBBS--------------S--HHHHHTEEEEEEEEE
T ss_pred             CCcCEEEEeeccc--------------hHHHHHHHhcCCCcEEEE
Confidence            6799998876543              223447888999999874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.41  E-value=2.5e-12  Score=111.47  Aligned_cols=110  Identities=17%  Similarity=0.164  Sum_probs=82.3

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..+|||+|||+|.+++.+++..++ .+++|+|+|+.+++.|++|++.++   ++++++|+.+.++..   ..+.||.|+.
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~---~~~~fDlVv~  159 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTA---LRGRVDILAA  159 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchh---cCCCEeEEEE
Confidence            358999999999999999998887 789999999999999999998765   478999987643221   1357999988


Q ss_pred             eCCCC-c-------hhhhhhh----------cccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDP-H-------FKKKHHK----------RRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~-~-------~~~~~~~----------~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.|-. .       +..+.++          ...+++.+++.+.++|+|||.+++
T Consensus       160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l  214 (251)
T TIGR03704       160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLV  214 (251)
T ss_pred             CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            76531 0       0000011          122457899999999999999875

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=2.2e-12  Score=113.51  Aligned_cols=107  Identities=21%  Similarity=0.298  Sum_probs=84.7

Q ss_pred             cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeC
Q 026219          127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC  206 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~  206 (241)
                      +|||||||||..++.++...+. ++|+|+|+|+++++.|++|++.+++.++.++.+|..+       ...+.||+|+.|.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-------~~~~~fDlIVsNP  184 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-------PLRGKFDLIVSNP  184 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-------ccCCceeEEEeCC
Confidence            7999999999999999999998 8999999999999999999999998677777776643       1245899988876


Q ss_pred             CC-Cch--hhh--------------hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          207 PD-PHF--KKK--------------HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       207 ~~-~~~--~~~--------------~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |- |..  ...              ......++..+++++.+.|+|||.+++
T Consensus       185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l  236 (280)
T COG2890         185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL  236 (280)
T ss_pred             CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence            52 110  000              012234788999999999999998875

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.40  E-value=3.3e-12  Score=118.89  Aligned_cols=117  Identities=19%  Similarity=0.259  Sum_probs=87.1

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+|||+|..+..+++...+.++|+++|+++.+++.+++++++.|+.|++++.+|+.+.... ....++.||.|
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~-~~~~~~~fD~V  329 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL-KPQWRGYFDRI  329 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc-cccccccCCEE
Confidence            35789999999999999999998643368999999999999999999999998999999999763111 11224679998


Q ss_pred             EEeCCCC----chhhhhhhcc----------cchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDP----HFKKKHHKRR----------VVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~----~~~~~~~~~r----------~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++.-|-.    +.+.+..+++          ..+..+++++.++|||||+|+
T Consensus       330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv  381 (434)
T PRK14901        330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV  381 (434)
T ss_pred             EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            8764410    0000100111          135799999999999999886

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.40  E-value=1.5e-12  Score=103.71  Aligned_cols=94  Identities=23%  Similarity=0.324  Sum_probs=70.9

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .+++.+|||||||+|.++..+++.  + .+++|+|+++.+++.          .++.....+..+     ...+++.||.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~--~-~~~~g~D~~~~~~~~----------~~~~~~~~~~~~-----~~~~~~~fD~   81 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKR--G-FEVTGVDISPQMIEK----------RNVVFDNFDAQD-----PPFPDGSFDL   81 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHT--T-SEEEEEESSHHHHHH----------TTSEEEEEECHT-----HHCHSSSEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHh--C-CEEEEEECCHHHHhh----------hhhhhhhhhhhh-----hhccccchhh
Confidence            346789999999999999999776  3 479999999999988          233333333322     1123689999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+......|.++.        ..+++++.++|||||.++|
T Consensus        82 i~~~~~l~~~~d~--------~~~l~~l~~~LkpgG~l~~  113 (161)
T PF13489_consen   82 IICNDVLEHLPDP--------EEFLKELSRLLKPGGYLVI  113 (161)
T ss_dssp             EEEESSGGGSSHH--------HHHHHHHHHCEEEEEEEEE
T ss_pred             HhhHHHHhhcccH--------HHHHHHHHHhcCCCCEEEE
Confidence            9887765555443        4999999999999999985

...

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.40  E-value=1.6e-12  Score=112.56  Aligned_cols=92  Identities=18%  Similarity=0.198  Sum_probs=69.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.+++.+++...  ..|+|+|+|+.+++.|+++++.+++. ++.+..+             +.+||.|
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-------------~~~fD~V  183 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-------------DLKADVI  183 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-------------CCCcCEE
Confidence            478999999999999988777543  36999999999999999999887762 2332221             1267888


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.+....           ....+++++.++|||||.+++
T Consensus       184 vani~~~-----------~~~~l~~~~~~~LkpgG~lil  211 (250)
T PRK00517        184 VANILAN-----------PLLELAPDLARLLKPGGRLIL  211 (250)
T ss_pred             EEcCcHH-----------HHHHHHHHHHHhcCCCcEEEE
Confidence            7664321           114889999999999999975

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.39  E-value=3.3e-13  Score=115.54  Aligned_cols=98  Identities=17%  Similarity=0.251  Sum_probs=73.3

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC------CEEEEEccccchHHhhccCCCCc
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS------NIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~------ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      +.+|||+|||+|.++.+||+..   ..|+|||++++|++.|+++.......      ++++.+.|++.     .   -+.
T Consensus        90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~-----~---~~~  158 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG-----L---TGK  158 (282)
T ss_pred             CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh-----c---ccc
Confidence            4679999999999999999984   56999999999999999984433221      25566666654     1   245


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||.|+..-.-.|.++.        +.+++.+.++|||||.+||
T Consensus       159 fDaVvcsevleHV~dp--------~~~l~~l~~~lkP~G~lfi  193 (282)
T KOG1270|consen  159 FDAVVCSEVLEHVKDP--------QEFLNCLSALLKPNGRLFI  193 (282)
T ss_pred             cceeeeHHHHHHHhCH--------HHHHHHHHHHhCCCCceEe
Confidence            8888654322222222        4999999999999999986

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=5.4e-12  Score=107.90  Aligned_cols=100  Identities=25%  Similarity=0.389  Sum_probs=87.4

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|+|.|.|+|.++..|++.....++|+.+|+.++..+.|++|+++.++.| +.+..+|+.+..      .+..||.
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~------~~~~vDa  166 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI------DEEDVDA  166 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc------cccccCE
Confidence            457999999999999999999855333899999999999999999999988866 999999998731      2348999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++..|+||             .+++.+.+.|||||.+.+
T Consensus       167 v~LDmp~PW-------------~~le~~~~~Lkpgg~~~~  193 (256)
T COG2519         167 VFLDLPDPW-------------NVLEHVSDALKPGGVVVV  193 (256)
T ss_pred             EEEcCCChH-------------HHHHHHHHHhCCCcEEEE
Confidence            999999997             899999999999998864

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.39  E-value=6.3e-12  Score=90.93  Aligned_cols=101  Identities=20%  Similarity=0.264  Sum_probs=78.5

Q ss_pred             cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeC
Q 026219          127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC  206 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~  206 (241)
                      +|+|+|||+|..+..+++ .+. .+++++|+++++++.+++.....+..+++++.+|+.+...    .....+|.|+...
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~i~~~~   74 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPG-ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----EADESFDVIISDP   74 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCC-CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc----ccCCceEEEEEcc
Confidence            489999999999999988 445 6899999999999999865444455679999999976321    1346799888776


Q ss_pred             CCCc-hhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          207 PDPH-FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       207 ~~~~-~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..+ ..        ....+++.+.+.|+|||.+++
T Consensus        75 ~~~~~~~--------~~~~~l~~~~~~l~~~g~~~~  102 (107)
T cd02440          75 PLHHLVE--------DLARFLEEARRLLKPGGVLVL  102 (107)
T ss_pred             ceeehhh--------HHHHHHHHHHHHcCCCCEEEE
Confidence            5443 22        225999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00811 spermidine synthase; Provisional

Probab=99.38  E-value=4e-12  Score=112.08  Aligned_cols=110  Identities=15%  Similarity=0.183  Sum_probs=86.3

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCCEEEEEccccchHHhhccCCCC
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-----LSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~-----l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      ++..+|||||||+|..+..+++..+. .+|++||+++++++.|++++...+     -++++++.+|+.+.+..    .++
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~-~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----~~~  149 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSV-EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE----TEN  149 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCC-CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh----CCC
Confidence            34678999999999999999886444 689999999999999999876431     25799999999875432    357


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+|+|++...+|+....    ....+.+++.+.+.|+|||.+++
T Consensus       150 ~yDvIi~D~~dp~~~~~----~l~t~ef~~~~~~~L~~gGvlv~  189 (283)
T PRK00811        150 SFDVIIVDSTDPVGPAE----GLFTKEFYENCKRALKEDGIFVA  189 (283)
T ss_pred             cccEEEECCCCCCCchh----hhhHHHHHHHHHHhcCCCcEEEE
Confidence            89999988766643211    23456899999999999999864

>PLN02476 O-methyltransferase

Probab=99.38  E-value=5.7e-12  Score=110.37  Aligned_cols=106  Identities=13%  Similarity=0.172  Sum_probs=88.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC-CCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS-YPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~-~~~~~d~V  202 (241)
                      ..+|||||+|+|..++.+++..+..+.++++|++++..+.|++++++.|+. +++++.+|+.+.++.+... .++.||.|
T Consensus       119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V  198 (278)
T PLN02476        119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA  198 (278)
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence            578999999999999999997764478999999999999999999999985 7999999999877664322 23679988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.....    .       +..+++.+.++|+|||.|++
T Consensus       199 FIDa~K~----~-------Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        199 FVDADKR----M-------YQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             EECCCHH----H-------HHHHHHHHHHhcCCCcEEEE
Confidence            8764321    1       25899999999999999874

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.38  E-value=1.8e-12  Score=107.54  Aligned_cols=100  Identities=17%  Similarity=0.223  Sum_probs=77.6

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEE-EEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIH-FLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~-~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...|||||||||.....+-- -|. ..|+++|.+++|-+++.+.++++...++. |+++|.++. +   ...++++|.|+
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~-~p~-~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~---~l~d~s~DtVV  150 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPW-KPI-NSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-P---QLADGSYDTVV  150 (252)
T ss_pred             ccceEEecccCCCCcccccC-CCC-ceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-c---ccccCCeeeEE
Confidence            35689999999988766322 245 78999999999999999999988766776 999999762 2   23579999885


Q ss_pred             EeC---CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILC---PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~---~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+   +...+           .+.|+++.|+|||||+++|
T Consensus       151 ~TlvLCSve~~-----------~k~L~e~~rlLRpgG~iif  180 (252)
T KOG4300|consen  151 CTLVLCSVEDP-----------VKQLNEVRRLLRPGGRIIF  180 (252)
T ss_pred             EEEEEeccCCH-----------HHHHHHHHHhcCCCcEEEE
Confidence            433   22211           4999999999999999986

>TIGR03438 probable methyltransferase

Probab=99.37  E-value=8e-12  Score=111.04  Aligned_cols=110  Identities=17%  Similarity=0.142  Sum_probs=74.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCC-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCC-CcEe
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYP-GPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p-~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~-~~~d  200 (241)
                      ++.+|||+|||+|..+..|++..+ + .+++|+|+|++|++.++++++.... -++.++++|+.+.++.. .... ....
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~-~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-~~~~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQP-ARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-PEPAAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccC-CeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh-cccccCCeE
Confidence            357899999999999999999875 4 6899999999999999998876431 24778899997633221 1111 1112


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++......++..      .-...+|+++++.|+|||.++|
T Consensus       141 ~~~~gs~~~~~~~------~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       141 GFFPGSTIGNFTP------EEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             EEEecccccCCCH------HHHHHHHHHHHHhcCCCCEEEE
Confidence            2221111111110      0114899999999999999875

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.37  E-value=4.7e-12  Score=119.93  Aligned_cols=110  Identities=15%  Similarity=0.216  Sum_probs=84.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ..+|||+|||+|.+++.++..+|+ .+|+|+|+|+.+++.|++|++.+++. +++++.+|+.+.    .  .+..||.|+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~----~--~~~~fDlIv  211 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN----I--EKQKFDFIV  211 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh----C--cCCCccEEE
Confidence            358999999999999999998888 89999999999999999999888874 699999998642    1  245799988


Q ss_pred             EeCCCCchhh--------hhh----------hcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKK--------KHH----------KRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~--------~~~----------~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.|--....        ..+          ....++..+++.+.++|+|||.+++
T Consensus       212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l  267 (506)
T PRK01544        212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL  267 (506)
T ss_pred             ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence            7654210000        000          1223567889999999999999875

>PTZ00146 fibrillarin; Provisional

Probab=99.37  E-value=7e-12  Score=110.21  Aligned_cols=104  Identities=13%  Similarity=0.105  Sum_probs=77.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.++..+++.......|+++|++++|.+...+.++..  +|+.++.+|+.....  ...+...+|.|+
T Consensus       132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~--y~~~~~~vDvV~  207 (293)
T PTZ00146        132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQK--YRMLVPMVDVIF  207 (293)
T ss_pred             CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhh--hhcccCCCCEEE
Confidence            4679999999999999999998753378999999998765555444322  689999999864211  111235789998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +...+|+.  .        +.++.++.++|||||.|+|
T Consensus       208 ~Dva~pdq--~--------~il~~na~r~LKpGG~~vI  235 (293)
T PTZ00146        208 ADVAQPDQ--A--------RIVALNAQYFLKNGGHFII  235 (293)
T ss_pred             EeCCCcch--H--------HHHHHHHHHhccCCCEEEE
Confidence            87765542  1        2667789999999999875

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.36  E-value=7.3e-12  Score=116.91  Aligned_cols=112  Identities=19%  Similarity=0.217  Sum_probs=85.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|..+..+++.. +. +.|+|+|+++++++.+++++++.|+.+++++++|+.+...    ..++.||.|
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~----~~~~~fD~V  324 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE----KFAEKFDKI  324 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc----hhcccCCEE
Confidence            46789999999999999999986 45 7999999999999999999999998889999999976311    123678988


Q ss_pred             EEeCCCC-------chhhh--hh-----hcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDP-------HFKKK--HH-----KRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~-------~~~~~--~~-----~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++..|-.       +++..  ..     +-...+..+++++.++|||||.++
T Consensus       325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv  376 (444)
T PRK14902        325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV  376 (444)
T ss_pred             EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            8765411       00000  00     000134679999999999999986

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.36  E-value=8.4e-12  Score=116.55  Aligned_cols=112  Identities=14%  Similarity=0.152  Sum_probs=85.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|..+..+++..+..+.|+|+|+|+.+++.+++++++.|+.+++++.+|+.+.     . ++..||.|+
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~-----~-~~~~fD~Vl  323 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF-----S-PEEQPDAIL  323 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc-----c-cCCCCCEEE
Confidence            4689999999999999999987643368999999999999999999999988899999999762     1 246799888


Q ss_pred             EeCCC---------C---chhhhh--hhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPD---------P---HFKKKH--HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~---------~---~~~~~~--~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..|-         |   |.....  .+-...+..+|+++.++|||||++++
T Consensus       324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvy  375 (445)
T PRK14904        324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVY  375 (445)
T ss_pred             EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            75331         1   100000  00001345799999999999999874

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.36  E-value=7.8e-12  Score=116.31  Aligned_cols=114  Identities=19%  Similarity=0.211  Sum_probs=86.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|..+..+++...+.++|+++|+|+.+++.+++++++.|+.+++++++|+.+. +.   ..++.||.|+
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l-~~---~~~~~fD~Vl  312 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL-TE---YVQDTFDRIL  312 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh-hh---hhhccCCEEE
Confidence            4679999999999999999998643379999999999999999999999988899999999752 11   1246789888


Q ss_pred             EeCCCC----chhhhhhhcc----------cchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDP----HFKKKHHKRR----------VVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~----~~~~~~~~~r----------~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..|-.    ....+..+++          ..+.++|.++.+.|||||.+++
T Consensus       313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY  364 (431)
T PRK14903        313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLY  364 (431)
T ss_pred             ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            754321    0000000001          1567899999999999999863

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.36  E-value=3.2e-12  Score=111.63  Aligned_cols=106  Identities=21%  Similarity=0.258  Sum_probs=74.3

Q ss_pred             CCcEEEEcCCccH----HHHHHHHHCCC----CcEEEEEeCCHHHHHHHHHHHHH----hC-------------------
Q 026219          125 LPLMVDIGSGSGR----FLIWLARRNPD----SGNYLGLEIRQKLVKRAEFWVQE----LA-------------------  173 (241)
Q Consensus       125 ~~~VLDIGCGtG~----~~~~la~~~p~----~~~v~giDis~~~v~~a~~~~~~----~~-------------------  173 (241)
                      +.+|+|+|||+|.    +++.+++.++.    ..+|+|+|+|+.|++.|++.+-.    .+                   
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v  179 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV  179 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence            4689999999996    56666665441    26899999999999999975310    01                   


Q ss_pred             ---C-CCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          174 ---L-SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       174 ---l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                         + .+++|.+.|+.+     .+.+++.||+|++.....++...      ....+++++++.|+|||.+++
T Consensus       180 ~~~ir~~V~F~~~dl~~-----~~~~~~~fD~I~crnvl~yf~~~------~~~~~l~~l~~~L~pGG~L~l  240 (264)
T smart00138      180 KPELKERVRFAKHNLLA-----ESPPLGDFDLIFCRNVLIYFDEP------TQRKLLNRFAEALKPGGYLFL  240 (264)
T ss_pred             ChHHhCcCEEeeccCCC-----CCCccCCCCEEEechhHHhCCHH------HHHHHHHHHHHHhCCCeEEEE
Confidence               1 268899999976     22235789988764322222110      114899999999999999985

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.36  E-value=5.1e-12  Score=118.68  Aligned_cols=110  Identities=20%  Similarity=0.324  Sum_probs=80.1

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      +.+...++.+|||||||+|.++..+++..   .+|+|+|+|++|++.+++..  ...++++++++|+.+.   ..+.++.
T Consensus        31 ~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~---~~~~~~~  102 (475)
T PLN02336         31 SLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSP---DLNISDG  102 (475)
T ss_pred             hhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh--ccCCceEEEEeccccc---ccCCCCC
Confidence            33333346789999999999999999874   46999999999998876532  2236899999999641   1233467


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +||.|+..++..+..+.      ....+++++.++|||||.+++
T Consensus       103 ~fD~I~~~~~l~~l~~~------~~~~~l~~~~r~Lk~gG~l~~  140 (475)
T PLN02336        103 SVDLIFSNWLLMYLSDK------EVENLAERMVKWLKVGGYIFF  140 (475)
T ss_pred             CEEEEehhhhHHhCCHH------HHHHHHHHHHHhcCCCeEEEE
Confidence            89999876544332211      014899999999999999875

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.35  E-value=6.2e-12  Score=115.27  Aligned_cols=100  Identities=16%  Similarity=0.172  Sum_probs=75.4

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||||||+|.++..+++.+ + ++|+|+|+|+++++.|+++++  ++ ++++...|..+     .   +++||.|
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~-g-~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~-----l---~~~fD~I  232 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHY-G-VSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRD-----L---NGQFDRI  232 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhh-----c---CCCCCEE
Confidence            356899999999999999999876 4 689999999999999999874  33 47888888754     2   4678877


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +....-.+...      .-.+.+++++.++|||||.+++
T Consensus       233 vs~~~~ehvg~------~~~~~~l~~i~r~LkpGG~lvl  265 (383)
T PRK11705        233 VSVGMFEHVGP------KNYRTYFEVVRRCLKPDGLFLL  265 (383)
T ss_pred             EEeCchhhCCh------HHHHHHHHHHHHHcCCCcEEEE
Confidence            64321111100      0114899999999999999875

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.35  E-value=3.9e-12  Score=107.45  Aligned_cols=107  Identities=17%  Similarity=0.205  Sum_probs=73.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhcc-CCCCcEe
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVS-SYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~-~~~~~~d  200 (241)
                      ++.+|||||||+|.++..++++.+..+.|+|||+++ |          .+..+++++++|+.+.  ++.+.. ..++.+|
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D  119 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQ  119 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence            467999999999999999999874326899999998 1          1346799999999863  222211 1357899


Q ss_pred             EEEEeCCCCchhh---hhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKK---KHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~---~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+......+...   ...........+++++.++|||||.|++
T Consensus       120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi  163 (209)
T PRK11188        120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV  163 (209)
T ss_pred             EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            8887552211100   0000111235799999999999999875

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.35  E-value=1.3e-11  Score=104.53  Aligned_cols=103  Identities=21%  Similarity=0.321  Sum_probs=87.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEE-ccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLF-ANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~-~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++|||||++.|..++.++...|++++++.||+++++.+.|++++++.|+.+ +..+. +|+.+.+..   ...++||+|
T Consensus        60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~---~~~~~fDli  136 (219)
T COG4122          60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR---LLDGSFDLV  136 (219)
T ss_pred             CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh---ccCCCccEE
Confidence            5899999999999999999999844899999999999999999999999965 88888 598876554   236899999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++...-.           -+..+++.+.++|+|||.+++
T Consensus       137 FIDadK~-----------~yp~~le~~~~lLr~GGliv~  164 (219)
T COG4122         137 FIDADKA-----------DYPEYLERALPLLRPGGLIVA  164 (219)
T ss_pred             EEeCChh-----------hCHHHHHHHHHHhCCCcEEEE
Confidence            8875322           125999999999999999874

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=4e-12  Score=111.87  Aligned_cols=107  Identities=19%  Similarity=0.188  Sum_probs=81.6

Q ss_pred             hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhc
Q 026219          114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLV  192 (241)
Q Consensus       114 ~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~  192 (241)
                      .+|.+.+.+ ++.+|||+|||+|.+++..++....  .++|+|++|-+++.|++|++.|++.. ++....+..+    ..
T Consensus       153 L~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~----~~  225 (300)
T COG2264         153 LEALEKLLK-KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE----VP  225 (300)
T ss_pred             HHHHHHhhc-CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh----hc
Confidence            456666655 4789999999999999999998654  79999999999999999999998864 2222222222    11


Q ss_pred             cCCCCcEeEEEEeC-CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          193 SSYPGPLMLVSILC-PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       193 ~~~~~~~d~V~~~~-~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                        ..+.+|+|+.|. .++.            ..+...+.+.|||||++++
T Consensus       226 --~~~~~DvIVANILA~vl------------~~La~~~~~~lkpgg~lIl  261 (300)
T COG2264         226 --ENGPFDVIVANILAEVL------------VELAPDIKRLLKPGGRLIL  261 (300)
T ss_pred             --ccCcccEEEehhhHHHH------------HHHHHHHHHHcCCCceEEE
Confidence              125899998776 2332            3899999999999999875

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.34  E-value=1.5e-11  Score=114.27  Aligned_cols=114  Identities=17%  Similarity=0.255  Sum_probs=85.3

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+|||+|..+..+++..++ ..|+|+|+|+.+++.+++++++.|+. ++++.+|+.+. +...  .+++||.|
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~-~~~~--~~~~fD~V  317 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDP-AQWW--DGQPFDRI  317 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccc-hhhc--ccCCCCEE
Confidence            35789999999999999999999876 79999999999999999999988874 78999999752 1111  24678988


Q ss_pred             EEeCCCC------------chhhh--hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDP------------HFKKK--HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~------------~~~~~--~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..|-.            |....  ..+-...+.++++.+.++|||||.+++
T Consensus       318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvy  370 (427)
T PRK10901        318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLY  370 (427)
T ss_pred             EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            8765421            10000  000012456899999999999999873

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.34  E-value=1e-11  Score=104.44  Aligned_cols=97  Identities=16%  Similarity=0.134  Sum_probs=71.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|..+..+++..++ ..++|||+|++|++.|+++.     +++.++++|+.+      +..+++||+|+
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~------~~~~~sfD~V~  110 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD------PFKDNFFDLVL  110 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC------CCCCCCEEEEE
Confidence            4578999999999999999998777 78999999999999998753     457788888865      12468899987


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ......+...      .....+++++++++  ++.++
T Consensus       111 ~~~vL~hl~p------~~~~~~l~el~r~~--~~~v~  139 (204)
T TIGR03587       111 TKGVLIHINP------DNLPTAYRELYRCS--NRYIL  139 (204)
T ss_pred             ECChhhhCCH------HHHHHHHHHHHhhc--CcEEE
Confidence            6443221110      01148889999987  34554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.33  E-value=3.2e-12  Score=105.77  Aligned_cols=106  Identities=18%  Similarity=0.256  Sum_probs=75.3

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      ++.+.-.++||+|||+|.++..|+.+-   ..++++|+|+.+++.|++++.  +.++++|+++|+.+.      .+++.|
T Consensus        39 Lp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~------~P~~~F  107 (201)
T PF05401_consen   39 LPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEF------WPEGRF  107 (201)
T ss_dssp             HTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT---------SS-E
T ss_pred             cCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCC------CCCCCe
Confidence            455555789999999999999999984   369999999999999999886  457999999999762      257899


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+|++.-..-+....     .....+++.+...|+|||.+++
T Consensus       108 DLIV~SEVlYYL~~~-----~~L~~~l~~l~~~L~pgG~LV~  144 (201)
T PF05401_consen  108 DLIVLSEVLYYLDDA-----EDLRAALDRLVAALAPGGHLVF  144 (201)
T ss_dssp             EEEEEES-GGGSSSH-----HHHHHHHHHHHHTEEEEEEEEE
T ss_pred             eEEEEehHhHcCCCH-----HHHHHHHHHHHHHhCCCCEEEE
Confidence            998764221111100     0114789999999999999985

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.32  E-value=1.2e-11  Score=104.63  Aligned_cols=103  Identities=18%  Similarity=0.273  Sum_probs=79.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .+.+|||+|||+|.++..+++..   ..++|+|+++.+++.+++++...+..++++..+|+.+..    ...++.+|.|+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~D~i~  117 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA----EKGAKSFDVVT  117 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh----cCCCCCccEEE
Confidence            36789999999999999988863   459999999999999999888776657899999987521    11246899887


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ....-.+..+.        ..+++++.++|+|||.+++
T Consensus       118 ~~~~l~~~~~~--------~~~l~~~~~~L~~gG~l~i  147 (224)
T TIGR01983       118 CMEVLEHVPDP--------QAFIRACAQLLKPGGILFF  147 (224)
T ss_pred             ehhHHHhCCCH--------HHHHHHHHHhcCCCcEEEE
Confidence            65322222222        4899999999999999874

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.31  E-value=8.5e-12  Score=110.34  Aligned_cols=105  Identities=21%  Similarity=0.225  Sum_probs=76.7

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      ++...+.. ++.+|||+|||||.+++..++....  +|+|+|++|.+++.|++|++.|++.. ++......+       .
T Consensus       153 ~~l~~~~~-~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~-------~  221 (295)
T PF06325_consen  153 ELLEKYVK-PGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVED-RIEVSLSED-------L  221 (295)
T ss_dssp             HHHHHHSS-TTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSC-------T
T ss_pred             HHHHHhcc-CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecc-------c
Confidence            34444544 3689999999999999999997654  79999999999999999999999864 332222221       1


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+.||+|+.|....           +...++..+.++|+|||.+++
T Consensus       222 ~~~~~dlvvANI~~~-----------vL~~l~~~~~~~l~~~G~lIl  257 (295)
T PF06325_consen  222 VEGKFDLVVANILAD-----------VLLELAPDIASLLKPGGYLIL  257 (295)
T ss_dssp             CCS-EEEEEEES-HH-----------HHHHHHHHCHHHEEEEEEEEE
T ss_pred             ccccCCEEEECCCHH-----------HHHHHHHHHHHhhCCCCEEEE
Confidence            248899999886432           224788889999999999875

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.30  E-value=1.9e-11  Score=103.45  Aligned_cols=100  Identities=17%  Similarity=0.170  Sum_probs=75.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.++..+++.  + ..++|+|+|++|++.|++++...+. .++.+.++|+.+     .   +.++|.|
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~--~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~---~~~fD~i  123 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKR--G-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS-----L---CGEFDIV  123 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh-----C---CCCcCEE
Confidence            4689999999999999999886  3 5799999999999999999887665 479999999875     2   2678877


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +....-.+....      ....+++++.+++++++.+.
T Consensus       124 i~~~~l~~~~~~------~~~~~l~~i~~~~~~~~~i~  155 (219)
T TIGR02021       124 VCMDVLIHYPAS------DMAKALGHLASLTKERVIFT  155 (219)
T ss_pred             EEhhHHHhCCHH------HHHHHHHHHHHHhCCCEEEE
Confidence            653221111000      01478999999998776654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.30  E-value=2.8e-11  Score=102.65  Aligned_cols=100  Identities=22%  Similarity=0.221  Sum_probs=72.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      +++.+|||||||+|.++..+++..   ..++|+|+|++|++.|+++....+. .++++..+|+..        .+++||.
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------~~~~fD~  130 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--------LLGRFDT  130 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--------ccCCcCE
Confidence            456799999999999999999873   4699999999999999999887776 479999999532        2467898


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEE
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV  239 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l  239 (241)
                      |+......+....      ....+++++.+.+++++.+
T Consensus       131 v~~~~~l~~~~~~------~~~~~l~~l~~~~~~~~~i  162 (230)
T PRK07580        131 VVCLDVLIHYPQE------DAARMLAHLASLTRGSLIF  162 (230)
T ss_pred             EEEcchhhcCCHH------HHHHHHHHHHhhcCCeEEE
Confidence            8654322111100      0147788888877655544

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.29  E-value=3.7e-11  Score=110.54  Aligned_cols=113  Identities=14%  Similarity=0.063  Sum_probs=83.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +.+|||+|||+|.+++..+.. +. .+|+++|+|+.+++.|++|++.+++.  +++++++|+.+.+..... ....||.|
T Consensus       221 g~rVLDlfsgtG~~~l~aa~~-ga-~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~-~~~~fDlV  297 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALMG-GC-SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-RGEKFDVI  297 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHhC-CC-CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-cCCCCCEE
Confidence            678999999999999876654 23 48999999999999999999999874  799999999876544321 23579999


Q ss_pred             EEeCCCCchhhhh--hhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKH--HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~--~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++.|-- .+...  .....-+..+++.+.++|+|||.++.
T Consensus       298 ilDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~  337 (396)
T PRK15128        298 VMDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLT  337 (396)
T ss_pred             EECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence            8876531 11110  00001245777788999999998863

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.29  E-value=2.7e-11  Score=104.57  Aligned_cols=101  Identities=23%  Similarity=0.342  Sum_probs=81.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccc-hHHhhccCCCCcE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASV-SFKQLVSSYPGPL  199 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~-~~~~~~~~~~~~~  199 (241)
                      .++.+|||.|.|+|.++..|++.. |. ++|+..|+.++.++.|+++++..++. |+.+.+.|+.+ .++   ...+..+
T Consensus        39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~-G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~---~~~~~~~  114 (247)
T PF08704_consen   39 RPGSRVLEAGTGSGSLTHALARAVGPT-GHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD---EELESDF  114 (247)
T ss_dssp             -TT-EEEEE--TTSHHHHHHHHHHTTT-SEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S---TT-TTSE
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHhCCC-eEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc---ccccCcc
Confidence            358999999999999999999875 55 89999999999999999999999985 89999999964 221   1124679


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhcc-ccCCEEE
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYL-MPGGKVY  240 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~L-kpGG~l~  240 (241)
                      |.|++..|+||             ..+..+.+.| ||||.+.
T Consensus       115 DavfLDlp~Pw-------------~~i~~~~~~L~~~gG~i~  143 (247)
T PF08704_consen  115 DAVFLDLPDPW-------------EAIPHAKRALKKPGGRIC  143 (247)
T ss_dssp             EEEEEESSSGG-------------GGHHHHHHHE-EEEEEEE
T ss_pred             cEEEEeCCCHH-------------HHHHHHHHHHhcCCceEE
Confidence            99999999998             7788899999 8999885

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PLN02366 spermidine synthase

Probab=99.28  E-value=4e-11  Score=106.81  Aligned_cols=110  Identities=20%  Similarity=0.317  Sum_probs=86.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL--AL--SNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~--~l--~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++..+||+||||.|..+..+++..+. .+|+.||+++++++.|++.+...  ++  ++++++.+|+.+.+...   +++.
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v-~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~---~~~~  165 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSV-EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA---PEGT  165 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCC-CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc---cCCC
Confidence            44688999999999999999876333 68999999999999999987542  22  47999999998754322   2467


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +|+|++...+|+..    ...+....+++.+.+.|+|||.+.
T Consensus       166 yDvIi~D~~dp~~~----~~~L~t~ef~~~~~~~L~pgGvlv  203 (308)
T PLN02366        166 YDAIIVDSSDPVGP----AQELFEKPFFESVARALRPGGVVC  203 (308)
T ss_pred             CCEEEEcCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEE
Confidence            99999887776532    123455789999999999999985

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.28  E-value=5.7e-11  Score=99.59  Aligned_cols=103  Identities=18%  Similarity=0.123  Sum_probs=78.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.+++.++.+..  .+|+++|+++++++.+++|++.++..+++++.+|+.+.+..    ....+|+|+
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~----~~~~fDlV~  126 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ----PGTPHNVVF  126 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh----cCCCceEEE
Confidence            357999999999999997555543  48999999999999999999998888899999999764322    235699988


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHh--ccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIID--YLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r--~LkpGG~l~~  241 (241)
                      ++.|-.  .       -..+.+++.+..  +|+|+|.+++
T Consensus       127 ~DPPy~--~-------g~~~~~l~~l~~~~~l~~~~iv~v  157 (199)
T PRK10909        127 VDPPFR--K-------GLLEETINLLEDNGWLADEALIYV  157 (199)
T ss_pred             ECCCCC--C-------ChHHHHHHHHHHCCCcCCCcEEEE
Confidence            876521  1       122466666655  4799998875

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.28  E-value=3e-11  Score=102.99  Aligned_cols=102  Identities=22%  Similarity=0.334  Sum_probs=78.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.  . .+++|+|+++++++.++++....+. ++++..+|+.+..    ...++.+|.|+
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~--~-~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~fD~Ii  119 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL--G-ADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELA----AEHPGQFDVVT  119 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--C-CeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhh----hhcCCCccEEE
Confidence            4678999999999999999886  4 5799999999999999998876665 6788888886521    11347899887


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +...-.+..+.        ..+++.+.++|+|||.+++
T Consensus       120 ~~~~l~~~~~~--------~~~l~~~~~~L~~gG~l~v  149 (233)
T PRK05134        120 CMEMLEHVPDP--------ASFVRACAKLVKPGGLVFF  149 (233)
T ss_pred             EhhHhhccCCH--------HHHHHHHHHHcCCCcEEEE
Confidence            65432222222        4889999999999999875

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.28  E-value=2e-11  Score=101.04  Aligned_cols=106  Identities=11%  Similarity=0.160  Sum_probs=71.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhcc-CCCCcEe
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVS-SYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~-~~~~~~d  200 (241)
                      ++.+|||||||+|.++..+++++...++|+|+|+|+.+           +..+++++.+|+.+.  .+.+.. ..+..+|
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D  100 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD  100 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence            47899999999999999999887432789999999964           225788898998652  111111 1346799


Q ss_pred             EEEEeCCCC----chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDP----HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~----~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+...+.+    |... +.......+.+++.+.++|+|||++++
T Consensus       101 ~V~~~~~~~~~g~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~lvi  144 (188)
T TIGR00438       101 VVMSDAAPNISGYWDID-HLRSIDLVELALDIAKEVLKPKGNFVV  144 (188)
T ss_pred             EEEcCCCCCCCCCcccc-HHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence            888754211    1100 000111235899999999999999875

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.27  E-value=8.8e-12  Score=105.60  Aligned_cols=104  Identities=14%  Similarity=0.294  Sum_probs=77.1

Q ss_pred             cEEEEcCCccHHHHHHHHHCCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhh-ccCCCCcEeEEEE
Q 026219          127 LMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQL-VSSYPGPLMLVSI  204 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~-~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~-~~~~~~~~d~V~~  204 (241)
                      +|||||||.|++...+.+..++ ...++++|.||.+++..+++..... +++...+.|+..  +.+ .+..++++|.+++
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~--~~~~~~~~~~svD~it~  150 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTS--PSLKEPPEEGSVDIITL  150 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccc--hhccCCCCcCccceEEE
Confidence            8999999999999999997653 2689999999999999988654332 456677777764  221 2224688998765


Q ss_pred             eC--CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LC--PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~--~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|  +.-++.+.        +..+++++++|||||.++|
T Consensus       151 IFvLSAi~pek~--------~~a~~nl~~llKPGG~llf  181 (264)
T KOG2361|consen  151 IFVLSAIHPEKM--------QSVIKNLRTLLKPGGSLLF  181 (264)
T ss_pred             EEEEeccChHHH--------HHHHHHHHHHhCCCcEEEE
Confidence            54  22223322        4999999999999999985

>PRK06202 hypothetical protein; Provisional

Probab=99.27  E-value=2.8e-11  Score=103.36  Aligned_cols=96  Identities=17%  Similarity=0.095  Sum_probs=68.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHH----CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARR----NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~----~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      ++.+|||||||+|.++..|++.    .++ .+++|+|+|++|++.|+++...   .++++...|+..     ++..++++
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~-~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~-----l~~~~~~f  130 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLR-LEVTAIDPDPRAVAFARANPRR---PGVTFRQAVSDE-----LVAEGERF  130 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCC-cEEEEEcCCHHHHHHHHhcccc---CCCeEEEEeccc-----ccccCCCc
Confidence            4578999999999999988764    344 6899999999999999886532   345666666543     12246789


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM  234 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lk  234 (241)
                      |+|+.++.-.|..+..      ...+++++.++++
T Consensus       131 D~V~~~~~lhh~~d~~------~~~~l~~~~r~~~  159 (232)
T PRK06202        131 DVVTSNHFLHHLDDAE------VVRLLADSAALAR  159 (232)
T ss_pred             cEEEECCeeecCChHH------HHHHHHHHHHhcC
Confidence            9987765443332210      1379999999998

>PRK01581 speE spermidine synthase; Validated

Probab=99.27  E-value=3.2e-11  Score=108.85  Aligned_cols=111  Identities=13%  Similarity=0.102  Sum_probs=84.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHH--H---HHh--CCCCEEEEEccccchHHhhccCC
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW--V---QEL--ALSNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~--~---~~~--~l~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      ++..+||+||||.|..+..+.+..+. .+|++||+++++++.|++.  +   .+.  .-++++++.+|+.+++..    .
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v-~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----~  223 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETV-LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----P  223 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----c
Confidence            44579999999999999988886554 6899999999999999962  1   111  225799999999875433    2


Q ss_pred             CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..||+|++..++|...   .-.+.....+++.+.+.|+|||.++.
T Consensus       224 ~~~YDVIIvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~  266 (374)
T PRK01581        224 SSLYDVIIIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVC  266 (374)
T ss_pred             CCCccEEEEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            56799999998876421   11234557899999999999999863

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.26  E-value=4.5e-11  Score=117.37  Aligned_cols=110  Identities=17%  Similarity=0.155  Sum_probs=84.5

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +.+|||+|||+|.+++.+++...  .+|++||+|+.+++.|++|++.+++.  +++++++|+.+++...    ...||+|
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~----~~~fDlI  612 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA----REQFDLI  612 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc----CCCcCEE
Confidence            67999999999999999998633  37999999999999999999999885  6999999998754332    4679999


Q ss_pred             EEeCCCCchhhhh----hhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKH----HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~----~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++.|.- .+...    ..-..-+..+++.+.++|+|||.+++
T Consensus       613 ilDPP~f-~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~  654 (702)
T PRK11783        613 FIDPPTF-SNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYF  654 (702)
T ss_pred             EECCCCC-CCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            8875531 00000    00011245788999999999999875

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.26  E-value=7e-11  Score=102.11  Aligned_cols=106  Identities=20%  Similarity=0.277  Sum_probs=87.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccC--CCCcEeE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSS--YPGPLML  201 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~--~~~~~d~  201 (241)
                      ..+|||||+++|..++.+++..+.+++++.+|++++..+.|++++++.|+ .+|+++.+|+.+.++.+.+.  ..++||.
T Consensus        80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~  159 (247)
T PLN02589         80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF  159 (247)
T ss_pred             CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence            47899999999999999998876448999999999999999999999997 57999999999887775432  2368999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++..-    +..       +..+++.+.++|+|||.|++
T Consensus       160 iFiDad----K~~-------Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        160 IFVDAD----KDN-------YINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             EEecCC----HHH-------hHHHHHHHHHhcCCCeEEEE
Confidence            887642    221       25888999999999999874

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.26  E-value=8.5e-11  Score=109.24  Aligned_cols=115  Identities=17%  Similarity=0.227  Sum_probs=81.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||+|||+|..+..+++..+. ++|+|+|+++++++.+++++++.|+. ++.+..+|.... +...  .++.||.
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~-~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~-~~~~--~~~~fD~  312 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQ-AQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP-SQWA--ENEQFDR  312 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc-cccc--cccccCE
Confidence            35789999999999999999998875 79999999999999999999998876 233366676531 1100  2467898


Q ss_pred             EEEeCCC---------C---chhhhh--hhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPD---------P---HFKKKH--HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~---------~---~~~~~~--~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++.-|-         |   |.....  .+-...+..+|+++.++|||||++++
T Consensus       313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvy  366 (426)
T TIGR00563       313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVY  366 (426)
T ss_pred             EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            8765321         1   000000  00011457899999999999999873

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00417 speE spermidine synthase

Probab=99.26  E-value=8.6e-11  Score=102.89  Aligned_cols=110  Identities=14%  Similarity=0.177  Sum_probs=84.3

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA----LSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~----l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++..+|||||||+|..+..+++..+. .+++++|+++++++.+++++...+    .++++++.+|+.+.+..    .++.
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~-~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~----~~~~  145 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSV-EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD----TENT  145 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCc-ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----CCCC
Confidence            34569999999999999998886544 689999999999999999875432    24688999998765432    2578


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|+|++..++|....    .......+++.+.+.|+|||.+++
T Consensus       146 yDvIi~D~~~~~~~~----~~l~~~ef~~~~~~~L~pgG~lv~  184 (270)
T TIGR00417       146 FDVIIVDSTDPVGPA----ETLFTKEFYELLKKALNEDGIFVA  184 (270)
T ss_pred             ccEEEEeCCCCCCcc----cchhHHHHHHHHHHHhCCCcEEEE
Confidence            999988776553211    123346899999999999999874

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.25  E-value=6.4e-11  Score=110.57  Aligned_cols=102  Identities=25%  Similarity=0.287  Sum_probs=78.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.+++.+++..   ..|+|+|+|++|++.|++|++.++++|++++.+|+.+.+... ...+.++|.|+
T Consensus       297 ~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~-~~~~~~fD~Vi  372 (443)
T PRK13168        297 PGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ-PWALGGFDKVL  372 (443)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh-hhhcCCCCEEE
Confidence            46799999999999999999884   479999999999999999999888889999999997643221 11245789888


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.|-...           ...++.+.+ ++|++.+|+
T Consensus       373 ~dPPr~g~-----------~~~~~~l~~-~~~~~ivyv  398 (443)
T PRK13168        373 LDPPRAGA-----------AEVMQALAK-LGPKRIVYV  398 (443)
T ss_pred             ECcCCcCh-----------HHHHHHHHh-cCCCeEEEE
Confidence            76543211           255666665 689888875

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=6e-11  Score=97.38  Aligned_cols=91  Identities=23%  Similarity=0.383  Sum_probs=70.9

Q ss_pred             CCCCCCCh---hhhHH-HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE
Q 026219          106 SFTVPAPI---PDWSE-VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF  181 (241)
Q Consensus       106 ~~~~~~~~---~~~~~-~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~  181 (241)
                      +|..|...   .-|.. ..++-++.+|+|+|||||.+++..+-..+.  .|+|+|+++++++.+++|+.+ ...+++|++
T Consensus        23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~   99 (198)
T COG2263          23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEE-LLGDVEFVV   99 (198)
T ss_pred             ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHh-hCCceEEEE
Confidence            55555442   23332 445556778999999999999999887765  899999999999999999988 445899999


Q ss_pred             ccccchHHhhccCCCCcEeEEEEeCC
Q 026219          182 ANASVSFKQLVSSYPGPLMLVSILCP  207 (241)
Q Consensus       182 ~D~~~~~~~~~~~~~~~~d~V~~~~~  207 (241)
                      +|+.+        +.+.+|.|+.|.|
T Consensus       100 ~dv~~--------~~~~~dtvimNPP  117 (198)
T COG2263         100 ADVSD--------FRGKFDTVIMNPP  117 (198)
T ss_pred             cchhh--------cCCccceEEECCC
Confidence            99986        2567787777754

>PHA03411 putative methyltransferase; Provisional

Probab=99.24  E-value=7.3e-11  Score=102.89  Aligned_cols=105  Identities=11%  Similarity=0.169  Sum_probs=78.1

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..+|||+|||+|.++..++++.+. .+|+|+|+|+.|++.++++.     ++++++++|+.+.    .  .+..||.|+.
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~----~--~~~kFDlIIs  132 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEF----E--SNEKFDVVIS  132 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhh----c--ccCCCcEEEE
Confidence            578999999999999999888766 68999999999999998753     4789999999762    1  2467999988


Q ss_pred             eCCCCchh--hhhh--hc-------cc-chHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFK--KKHH--KR-------RV-VQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~--~~~~--~~-------r~-~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.|-.+..  +...  ..       .. ...++++....+|+|+|.+++
T Consensus       133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~  181 (279)
T PHA03411        133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF  181 (279)
T ss_pred             cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence            76542211  1110  01       11 146889999999999998764

>PRK03612 spermidine synthase; Provisional

Probab=99.24  E-value=5.9e-11  Score=112.88  Aligned_cols=111  Identities=12%  Similarity=0.124  Sum_probs=85.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHH--HHHh-----CCCCEEEEEccccchHHhhccCC
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW--VQEL-----ALSNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~--~~~~-----~l~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      ++.++|||||||+|..+..+++..+. .+++++|+++++++.++++  ....     ..++++++.+|+.+.+..    .
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v-~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----~  370 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDV-EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----L  370 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCc-CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh----C
Confidence            34678999999999999999875333 5899999999999999983  2221     125799999999875432    2


Q ss_pred             CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++||.|++..++|+...   ..+...+++++.+.+.|||||.+++
T Consensus       371 ~~~fDvIi~D~~~~~~~~---~~~L~t~ef~~~~~~~L~pgG~lv~  413 (521)
T PRK03612        371 AEKFDVIIVDLPDPSNPA---LGKLYSVEFYRLLKRRLAPDGLLVV  413 (521)
T ss_pred             CCCCCEEEEeCCCCCCcc---hhccchHHHHHHHHHhcCCCeEEEE
Confidence            578999999988764221   1235567899999999999999874

>PLN02672 methionine S-methyltransferase

Probab=99.22  E-value=1e-10  Score=118.14  Aligned_cols=112  Identities=20%  Similarity=0.169  Sum_probs=84.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC----------------CCEEEEEccccchH
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL----------------SNIHFLFANASVSF  188 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l----------------~ni~~~~~D~~~~~  188 (241)
                      +.+|||+|||+|.+++.++++++. .+|+|+|+|+++++.|++|++.+++                .+++++++|..+.+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            358999999999999999999987 7999999999999999999987643                36999999997632


Q ss_pred             HhhccCCCCcEeEEEEeCCC---Cchhh-----hh----------------------hhcccchHHHHHHHHhccccCCE
Q 026219          189 KQLVSSYPGPLMLVSILCPD---PHFKK-----KH----------------------HKRRVVQKPLVDSIIDYLMPGGK  238 (241)
Q Consensus       189 ~~~~~~~~~~~d~V~~~~~~---~~~~~-----~~----------------------~~~r~~~~~ll~~l~r~LkpGG~  238 (241)
                          ......||+|+.|.|-   ...+.     ..                      .....+++.+++++.++|+|||.
T Consensus       198 ----~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~  273 (1082)
T PLN02672        198 ----RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI  273 (1082)
T ss_pred             ----cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence                1112369998877652   00000     00                      11223558899999999999999


Q ss_pred             EEc
Q 026219          239 VYF  241 (241)
Q Consensus       239 l~~  241 (241)
                      +++
T Consensus       274 l~l  276 (1082)
T PLN02672        274 MIF  276 (1082)
T ss_pred             EEE
Confidence            875

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.20  E-value=1.9e-10  Score=93.62  Aligned_cols=97  Identities=15%  Similarity=0.131  Sum_probs=70.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..++++  . .+++|+|+++.+++.+++++..  .+|++++++|+.+.     ...+..+|.|+
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~--~-~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~-----~~~~~~~d~vi   82 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLER--A-ARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKF-----DLPKLQPYKVV   82 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhc--C-CeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcC-----CccccCCCEEE
Confidence            4578999999999999999998  4 5799999999999999988753  35899999999862     22234578887


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhc--cccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDY--LMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~--LkpGG~l~~  241 (241)
                      .+.|-..           ...++..+.+.  +.++|.+++
T Consensus        83 ~n~Py~~-----------~~~~i~~~l~~~~~~~~~~l~~  111 (169)
T smart00650       83 GNLPYNI-----------STPILFKLLEEPPAFRDAVLMV  111 (169)
T ss_pred             ECCCccc-----------HHHHHHHHHhcCCCcceEEEEE
Confidence            7755321           12444444432  346777654

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.19  E-value=1.5e-10  Score=103.55  Aligned_cols=99  Identities=23%  Similarity=0.213  Sum_probs=75.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||+|||+|.+++.+++.  . .+|+|+|+|+.+++.|+++++.++++|++++.+|+.+....    .++.+|.|++
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~--~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~----~~~~~D~Vv~  246 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATP--G-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA----QGEVPDLVLV  246 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh----cCCCCeEEEE
Confidence            578999999999999999985  3 57999999999999999999999988899999999764321    2356898887


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.|-.          .....+++.+.+ ++|++.+|+
T Consensus       247 dPPr~----------G~~~~~~~~l~~-~~~~~ivyv  272 (315)
T PRK03522        247 NPPRR----------GIGKELCDYLSQ-MAPRFILYS  272 (315)
T ss_pred             CCCCC----------CccHHHHHHHHH-cCCCeEEEE
Confidence            74311          112344444443 678887764

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.19  E-value=2e-10  Score=106.86  Aligned_cols=103  Identities=21%  Similarity=0.262  Sum_probs=79.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.+++.+++..   ..|+|+|+++.+++.|++|++.+++.|++++.+|+.+.++... ..+.++|.|+
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~-~~~~~~D~vi  367 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP-WAGQIPDVLL  367 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH-hcCCCCCEEE
Confidence            35789999999999999999874   3699999999999999999999998899999999976544321 1235689887


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..|-.          -....+++.+.+ |+|+|.+|+
T Consensus       368 ~dPPr~----------G~~~~~l~~l~~-l~~~~ivyv  394 (431)
T TIGR00479       368 LDPPRK----------GCAAEVLRTIIE-LKPERIVYV  394 (431)
T ss_pred             ECcCCC----------CCCHHHHHHHHh-cCCCEEEEE
Confidence            765421          112477777665 789888774

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.18  E-value=2.4e-10  Score=102.11  Aligned_cols=70  Identities=21%  Similarity=0.164  Sum_probs=56.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCCEEEEEccccchHHhhccCCCCc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-----LSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~-----l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++.+|||||||+|.++..++++  + .+|+|+|+|++|++.|+++.+..+     ..+++|..+|+.+     .   ++.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-----l---~~~  212 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--G-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-----L---SGK  212 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-----c---CCC
Confidence            4679999999999999999986  4 579999999999999999987642     2467888888753     1   467


Q ss_pred             EeEEEE
Q 026219          199 LMLVSI  204 (241)
Q Consensus       199 ~d~V~~  204 (241)
                      ||.|+.
T Consensus       213 fD~Vv~  218 (315)
T PLN02585        213 YDTVTC  218 (315)
T ss_pred             cCEEEE
Confidence            887754

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.16  E-value=9.8e-11  Score=99.84  Aligned_cols=112  Identities=7%  Similarity=0.007  Sum_probs=76.3

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHH------------HhCCCCEEEEEc
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQ------------ELALSNIHFLFA  182 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~------------~~~l~ni~~~~~  182 (241)
                      +|......+++.+||+.|||.|.-+..|+++  + ..|+|+|+|+.+++.+.+...            ...-.+++++++
T Consensus        34 ~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~--G-~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g  110 (226)
T PRK13256         34 KHFSKLNINDSSVCLIPMCGCSIDMLFFLSK--G-VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVA  110 (226)
T ss_pred             HHHHhcCCCCCCeEEEeCCCChHHHHHHHhC--C-CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEc
Confidence            5555444445689999999999999999998  4 569999999999999865210            011136899999


Q ss_pred             cccchHHhhccCCCCcEeEEE----EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          183 NASVSFKQLVSSYPGPLMLVS----ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       183 D~~~~~~~~~~~~~~~~d~V~----~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+.+.-.  .....+.||.|+    +....|  ..+        .++++.+.++|+|||.+++
T Consensus       111 D~f~l~~--~~~~~~~fD~VyDra~~~Alpp--~~R--------~~Y~~~l~~lL~pgg~lll  161 (226)
T PRK13256        111 DIFNLPK--IANNLPVFDIWYDRGAYIALPN--DLR--------TNYAKMMLEVCSNNTQILL  161 (226)
T ss_pred             cCcCCCc--cccccCCcCeeeeehhHhcCCH--HHH--------HHHHHHHHHHhCCCcEEEE
Confidence            9986311  000114566553    222222  222        4999999999999998763

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.15  E-value=1.1e-10  Score=96.48  Aligned_cols=90  Identities=12%  Similarity=0.179  Sum_probs=69.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||+|||.|.++..|.+. .+ ...+|+|++++.+..|.+       +.+.++++|+.+.+..   ++|.+||.|++
T Consensus        14 gsrVLDLGCGdG~LL~~L~~~-k~-v~g~GvEid~~~v~~cv~-------rGv~Viq~Dld~gL~~---f~d~sFD~VIl   81 (193)
T PF07021_consen   14 GSRVLDLGCGDGELLAYLKDE-KQ-VDGYGVEIDPDNVAACVA-------RGVSVIQGDLDEGLAD---FPDQSFDYVIL   81 (193)
T ss_pred             CCEEEecCCCchHHHHHHHHh-cC-CeEEEEecCHHHHHHHHH-------cCCCEEECCHHHhHhh---CCCCCccEEeh
Confidence            799999999999999999886 45 789999999999888755       2467999999875443   35899999987


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLM  234 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lk  234 (241)
                      .-.-.....+        +.+|+++.|+-|
T Consensus        82 sqtLQ~~~~P--------~~vL~EmlRVgr  103 (193)
T PF07021_consen   82 SQTLQAVRRP--------DEVLEEMLRVGR  103 (193)
T ss_pred             HhHHHhHhHH--------HHHHHHHHHhcC
Confidence            7544333333        488888877633

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PHA03412 putative methyltransferase; Provisional

Probab=99.15  E-value=2.5e-10  Score=97.48  Aligned_cols=103  Identities=12%  Similarity=0.099  Sum_probs=76.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCC---CCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNP---DSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p---~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      +.+|||+|||+|.+++.++++.+   . .+|+|+|+++.+++.|+++.     .++.++.+|+...     . .+.+||.
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~-~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~-----~-~~~~FDl  117 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKP-REIVCVELNHTYYKLGKRIV-----PEATWINADALTT-----E-FDTLFDM  117 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCC-cEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcc-----c-ccCCccE
Confidence            57999999999999999998753   4 68999999999999998754     4688999999751     1 2568999


Q ss_pred             EEEeCCCCchhhh----hhhcccchHHHHHHHHhccccCCEE
Q 026219          202 VSILCPDPHFKKK----HHKRRVVQKPLVDSIIDYLMPGGKV  239 (241)
Q Consensus       202 V~~~~~~~~~~~~----~~~~r~~~~~ll~~l~r~LkpGG~l  239 (241)
                      |+.|.|--..+.+    .+....+...+++.+.+++++|+.|
T Consensus       118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I  159 (241)
T PHA03412        118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI  159 (241)
T ss_pred             EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence            9988653211111    1122345678999999977777753

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.13  E-value=6.9e-11  Score=100.22  Aligned_cols=98  Identities=13%  Similarity=0.122  Sum_probs=67.0

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..++|+|||+|..++.++..+.+   |+|+|+|+.|++.|++.....-. ....+...+..+    +. ..+.++|+|+.
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~----L~-g~e~SVDlI~~  106 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD----LL-GGEESVDLITA  106 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCCcccccCCcccccccccc----cc-CCCcceeeehh
Confidence            38999999999888888888655   99999999999998763211100 011222222222    12 23789999976


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCC-EEE
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG-KVY  240 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG-~l~  240 (241)
                      --.-+|+..         +.+.++++|+||+.| .+.
T Consensus       107 Aqa~HWFdl---------e~fy~~~~rvLRk~Gg~ia  134 (261)
T KOG3010|consen  107 AQAVHWFDL---------ERFYKEAYRVLRKDGGLIA  134 (261)
T ss_pred             hhhHHhhch---------HHHHHHHHHHcCCCCCEEE
Confidence            444456644         599999999998777 543

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.12  E-value=5.2e-10  Score=102.37  Aligned_cols=99  Identities=24%  Similarity=0.250  Sum_probs=77.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||+|||+|.+++.++..  . ..|+|||+++.+++.|++|++.++++|++++.+|+.+....    ....+|.|++
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~--~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~----~~~~~D~vi~  306 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGP--D-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA----QMSAPELVLV  306 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhc--C-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh----cCCCCCEEEE
Confidence            578999999999999999975  3 47999999999999999999999988999999999764322    1245898877


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.|-.          -....+++.+.+ ++|++.+|+
T Consensus       307 DPPr~----------G~~~~~l~~l~~-~~p~~ivyv  332 (374)
T TIGR02085       307 NPPRR----------GIGKELCDYLSQ-MAPKFILYS  332 (374)
T ss_pred             CCCCC----------CCcHHHHHHHHh-cCCCeEEEE
Confidence            74421          223467777764 799998875

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.11  E-value=9.4e-10  Score=96.71  Aligned_cols=111  Identities=16%  Similarity=0.224  Sum_probs=71.8

Q ss_pred             hhHHH---hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHh
Q 026219          115 DWSEV---YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQ  190 (241)
Q Consensus       115 ~~~~~---~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~  190 (241)
                      +|.++   +.+-++.+|||||||+|.++..++++.+.  .|+|||.++...-..+-..+-.|.++ +..+-.-+++    
T Consensus       103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~----  176 (315)
T PF08003_consen  103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED----  176 (315)
T ss_pred             hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh----
Confidence            55543   33457899999999999999999999776  79999999886555433222234333 2333222322    


Q ss_pred             hccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          191 LVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       191 ~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       ++. .+.||.|+..-..-|..++        -..|+++...|+|||.+++
T Consensus       177 -Lp~-~~~FDtVF~MGVLYHrr~P--------l~~L~~Lk~~L~~gGeLvL  217 (315)
T PF08003_consen  177 -LPN-LGAFDTVFSMGVLYHRRSP--------LDHLKQLKDSLRPGGELVL  217 (315)
T ss_pred             -ccc-cCCcCEEEEeeehhccCCH--------HHHHHHHHHhhCCCCEEEE
Confidence             222 4678877542211111111        3899999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.11  E-value=4.7e-10  Score=94.05  Aligned_cols=99  Identities=16%  Similarity=0.262  Sum_probs=76.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|+|+.||.|.+++.+|+..+. ..|+++|++|++++..+++++.+++++ +..+.+|+.+..    .  ...+|.|
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~~-~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~----~--~~~~drv  173 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGKA-KRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL----P--EGKFDRV  173 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT-S-SEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------TT-EEEE
T ss_pred             cceEEEEccCCccHHHHHHhhhcCc-cEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc----C--ccccCEE
Confidence            4789999999999999999996656 789999999999999999999999864 899999998732    1  5789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++.|..-            ..+|..+.+++++||.+.+
T Consensus       174 im~lp~~~------------~~fl~~~~~~~~~~g~ihy  200 (200)
T PF02475_consen  174 IMNLPESS------------LEFLDAALSLLKEGGIIHY  200 (200)
T ss_dssp             EE--TSSG------------GGGHHHHHHHEEEEEEEEE
T ss_pred             EECChHHH------------HHHHHHHHHHhcCCcEEEC
Confidence            98876532            2789999999999998864

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.09  E-value=8.3e-10  Score=95.26  Aligned_cols=116  Identities=18%  Similarity=0.141  Sum_probs=81.3

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...|||+|||+|..++.++...|. +.|++||.|+.++..|.+|++++++. .+.+++-+.+.-.....+..++.+|.++
T Consensus       149 ~~~ildlgtGSGaIslsll~~L~~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv  227 (328)
T KOG2904|consen  149 HTHILDLGTGSGAISLSLLHGLPQ-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV  227 (328)
T ss_pred             cceEEEecCCccHHHHHHHhcCCC-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence            357999999999999999999997 99999999999999999999999885 4777754433210000112357788777


Q ss_pred             EeCCCC--------chhhh----------hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDP--------HFKKK----------HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~--------~~~~~----------~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|.|--        .+.-+          ..+...+...++.-+.|.|+|||.++|
T Consensus       228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l  283 (328)
T KOG2904|consen  228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL  283 (328)
T ss_pred             cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence            664320        00000          111223556777888999999999875

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.08  E-value=4.3e-10  Score=93.54  Aligned_cols=92  Identities=14%  Similarity=0.165  Sum_probs=67.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||||||+|.++..+++.. . ..++|+|+|+++++.+++       .+++++.+|+.+.++   +..++++|.|+.
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~~-~-~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~---~~~~~sfD~Vi~   81 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDEK-Q-VRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLE---AFPDKSFDYVIL   81 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhcc-C-CcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhccc---ccCCCCcCEEEE
Confidence            5789999999999999988764 3 578999999999998854       257888888864221   123578999987


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccC
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG  236 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG  236 (241)
                      +..-.|..+.        ..+++++.+.++++
T Consensus        82 ~~~l~~~~d~--------~~~l~e~~r~~~~~  105 (194)
T TIGR02081        82 SQTLQATRNP--------EEILDEMLRVGRHA  105 (194)
T ss_pred             hhHhHcCcCH--------HHHHHHHHHhCCeE
Confidence            6544343332        48889988887753

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=8.4e-10  Score=89.99  Aligned_cols=111  Identities=19%  Similarity=0.251  Sum_probs=85.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ....++|||||+|..+..|++...+.....++|++|.+++..++.++.++. +++.++.|....+    .  ++++|+++
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l----~--~~~VDvLv  115 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGL----R--NESVDVLV  115 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhh----c--cCCccEEE
Confidence            357899999999999999998764437899999999999999999887765 6889999987632    2  38899888


Q ss_pred             EeCCC-Cchhh---------hh---hhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPD-PHFKK---------KH---HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~-~~~~~---------~~---~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++-|- |....         ..   ...|.+.+.++..+-.+|.|.|.+|+
T Consensus       116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl  166 (209)
T KOG3191|consen  116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL  166 (209)
T ss_pred             ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence            77542 11111         11   34566778999999999999999985

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.06  E-value=1.4e-09  Score=89.79  Aligned_cols=109  Identities=17%  Similarity=0.144  Sum_probs=78.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcE---------EEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhcc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGN---------YLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVS  193 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~---------v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~  193 (241)
                      ++..|||--||+|.+++..+....+ ..         ++|+|+++++++.|++|++..++. .+.+.+.|+.+     ++
T Consensus        28 ~~~~vlDP~CGsGtiliEaa~~~~~-~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~-----l~  101 (179)
T PF01170_consen   28 PGDVVLDPFCGSGTILIEAALMGAN-IPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARE-----LP  101 (179)
T ss_dssp             TTS-EEETT-TTSHHHHHHHHHHTT-TSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGG-----GG
T ss_pred             CCCEEeecCCCCCHHHHHHHHHhhC-cccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhh-----cc
Confidence            4679999999999999998877666 44         899999999999999999998885 48999999986     22


Q ss_pred             CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCE
Q 026219          194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGK  238 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~  238 (241)
                      ..++++|.|+.+.|--..-........++..+++++.++|++...
T Consensus       102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v  146 (179)
T PF01170_consen  102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAV  146 (179)
T ss_dssp             GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEE
T ss_pred             cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEE
Confidence            346789999988753211111122345778999999999999433

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.05  E-value=7.5e-10  Score=99.58  Aligned_cols=112  Identities=15%  Similarity=0.184  Sum_probs=75.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-------CC---CCEEEEEccccch-HHhhc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-------AL---SNIHFLFANASVS-FKQLV  192 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-------~l---~ni~~~~~D~~~~-~~~~~  192 (241)
                      ++.+|||||||-|.-+........  ..++|+||++..|+.|+++.++.       ..   -...++.+|.... +...+
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            478999999999998888877654  48999999999999999998431       11   1356788887542 22223


Q ss_pred             cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......||+|.+.|..++.-..    ....+.+|+++...|+|||.|+.
T Consensus       140 ~~~~~~FDvVScQFalHY~Fes----e~~ar~~l~Nvs~~Lk~GG~FIg  184 (331)
T PF03291_consen  140 PPRSRKFDVVSCQFALHYAFES----EEKARQFLKNVSSLLKPGGYFIG  184 (331)
T ss_dssp             SSTTS-EEEEEEES-GGGGGSS----HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cccCCCcceeehHHHHHHhcCC----HHHHHHHHHHHHHhcCCCCEEEE
Confidence            2123589999988865432111    11225899999999999999873

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.05  E-value=9.2e-10  Score=93.49  Aligned_cols=56  Identities=23%  Similarity=0.278  Sum_probs=46.9

Q ss_pred             hhHHHhcCC--CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026219          115 DWSEVYKNP--TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE  171 (241)
Q Consensus       115 ~~~~~~~~~--~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~  171 (241)
                      .|...+.++  ....+|||||-+|.++..+++.+.. ..|+|+||++..++.|+++++.
T Consensus        47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             hhhhhccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence            455554432  3578999999999999999999987 7899999999999999998763

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.05  E-value=2.2e-09  Score=97.77  Aligned_cols=101  Identities=15%  Similarity=0.171  Sum_probs=75.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC---------
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY---------  195 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~---------  195 (241)
                      +.++||++||+|.+++.+++...   .|+|||+++.+++.|++|++.++++|++++.+|+.+.++.+....         
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~  283 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID  283 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence            35799999999999999998753   699999999999999999999998899999999987655432100         


Q ss_pred             --CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 --PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 --~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                        ...+|.|++..|-.          -..+.+++.+.+   |++.+|+
T Consensus       284 ~~~~~~D~v~lDPPR~----------G~~~~~l~~l~~---~~~ivyv  318 (362)
T PRK05031        284 LKSYNFSTIFVDPPRA----------GLDDETLKLVQA---YERILYI  318 (362)
T ss_pred             ccCCCCCEEEECCCCC----------CCcHHHHHHHHc---cCCEEEE
Confidence              12478777654321          123466666654   6777774

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.05  E-value=3.2e-09  Score=88.35  Aligned_cols=106  Identities=15%  Similarity=0.002  Sum_probs=76.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.++||++||+|.+++.++.+...  .|+++|+++.+++.+++|++.++.. +++++.+|+.+.+..... ....+|+|
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~-~~~~~dvv  125 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK-KPTFDNVI  125 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-cCCCceEE
Confidence            3688999999999999999998654  7999999999999999999998875 699999999765433211 11225655


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHH--hccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSII--DYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~--r~LkpGG~l~~  241 (241)
                      +...|  ...       .....+++.+.  .+|+++|.+++
T Consensus       126 ~~DPP--y~~-------~~~~~~l~~l~~~~~l~~~~iiv~  157 (189)
T TIGR00095       126 YLDPP--FFN-------GALQALLELCENNWILEDTVLIVV  157 (189)
T ss_pred             EECcC--CCC-------CcHHHHHHHHHHCCCCCCCeEEEE
Confidence            44322  111       11235555553  47899998864

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.05  E-value=5.2e-10  Score=90.52  Aligned_cols=76  Identities=14%  Similarity=0.122  Sum_probs=59.3

Q ss_pred             EEEeCCHHHHHHHHHHHHHhC---CCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHH
Q 026219          153 LGLEIRQKLVKRAEFWVQELA---LSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSI  229 (241)
Q Consensus       153 ~giDis~~~v~~a~~~~~~~~---l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l  229 (241)
                      +|+|+|++|++.|+++.+..+   ..+++++++|+.+     ++..+++||.|++.+...+..+.        ..+++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~-----lp~~~~~fD~v~~~~~l~~~~d~--------~~~l~ei   67 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID-----LPFDDCEFDAVTMGYGLRNVVDR--------LRAMKEM   67 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh-----CCCCCCCeeEEEecchhhcCCCH--------HHHHHHH
Confidence            489999999999988765322   3579999999986     34457789999877655444333        4999999


Q ss_pred             HhccccCCEEEc
Q 026219          230 IDYLMPGGKVYF  241 (241)
Q Consensus       230 ~r~LkpGG~l~~  241 (241)
                      +|+|||||.++|
T Consensus        68 ~rvLkpGG~l~i   79 (160)
T PLN02232         68 YRVLKPGSRVSI   79 (160)
T ss_pred             HHHcCcCeEEEE
Confidence            999999999874

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.05  E-value=5.3e-10  Score=93.77  Aligned_cols=102  Identities=21%  Similarity=0.330  Sum_probs=72.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...-|||||||+|..+..+...  + -.++|+|||+.|++.|.+.  +  +. -.++.+|.-+.    +++.++.||.++
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~--G-h~wiGvDiSpsML~~a~~~--e--~e-gdlil~DMG~G----lpfrpGtFDg~I  117 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDS--G-HQWIGVDISPSMLEQAVER--E--LE-GDLILCDMGEG----LPFRPGTFDGVI  117 (270)
T ss_pred             CCcEEEEeccCCCcchheeccC--C-ceEEeecCCHHHHHHHHHh--h--hh-cCeeeeecCCC----CCCCCCccceEE
Confidence            4788999999999999888775  3 4799999999999999862  1  11 35778888764    445678888664


Q ss_pred             Ee-------CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 IL-------CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~-------~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..       ..++..+.+  ++|+  ..|+..++.+|++|++.++
T Consensus       118 SISAvQWLcnA~~s~~~P--~~Rl--~~FF~tLy~~l~rg~raV~  158 (270)
T KOG1541|consen  118 SISAVQWLCNADKSLHVP--KKRL--LRFFGTLYSCLKRGARAVL  158 (270)
T ss_pred             EeeeeeeecccCccccCh--HHHH--HHHhhhhhhhhccCceeEE
Confidence            32       222211111  1122  5889999999999998654

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.04  E-value=2.7e-09  Score=96.98  Aligned_cols=100  Identities=14%  Similarity=0.167  Sum_probs=74.7

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC--C--------
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS--Y--------  195 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~--~--------  195 (241)
                      .+|||+|||+|.+++.+++...   .|+|||+++++++.|++|++.++++|++++.+|+.+.++.....  .        
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL  275 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence            4799999999999999998853   69999999999999999999999989999999998765432110  0        


Q ss_pred             -CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 -PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 -~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       ...+|.|++..|-.          -....+++.+.+   |++.+|+
T Consensus       276 ~~~~~d~v~lDPPR~----------G~~~~~l~~l~~---~~~ivYv  309 (353)
T TIGR02143       276 KSYNCSTIFVDPPRA----------GLDPDTCKLVQA---YERILYI  309 (353)
T ss_pred             ccCCCCEEEECCCCC----------CCcHHHHHHHHc---CCcEEEE
Confidence             11268777664421          122466666654   7888875

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.04  E-value=2e-09  Score=100.90  Aligned_cols=113  Identities=18%  Similarity=0.191  Sum_probs=87.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|+|.|.-+..++....+.+.++++|+++..++..++++++.|+.|+.+...|+.... .   ..++.||.|+
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~-~---~~~~~fD~IL  188 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG-A---ALPETFDAIL  188 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh-h---hchhhcCeEE
Confidence            57899999999999999999987654799999999999999999999999999999999987521 1   2346789888


Q ss_pred             EeCCCC----chhhhhhh----------cccchHHHHHHHHhccccCCEEE
Q 026219          204 ILCPDP----HFKKKHHK----------RRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       204 ~~~~~~----~~~~~~~~----------~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +.-|-.    +.+++...          --.++.++|+.+.++|||||+|+
T Consensus       189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV  239 (470)
T PRK11933        189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV  239 (470)
T ss_pred             EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence            765421    11111111          11267899999999999999885

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.04  E-value=1.9e-09  Score=98.80  Aligned_cols=99  Identities=19%  Similarity=0.085  Sum_probs=80.6

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||++||+|..++.++...+. ..|+++|+++++++.+++|++.+++++++++.+|+.+.+..     ...+|.|++
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~-~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-----~~~fD~V~l  131 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGV-EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-----ERKFDVVDI  131 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-----cCCCCEEEE
Confidence            358999999999999999987664 58999999999999999999999998889999999764321     346898887


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+.. +           ..+++...+.+++||.+++
T Consensus       132 DP~Gs-~-----------~~~l~~al~~~~~~gilyv  156 (382)
T PRK04338        132 DPFGS-P-----------APFLDSAIRSVKRGGLLCV  156 (382)
T ss_pred             CCCCC-c-----------HHHHHHHHHHhcCCCEEEE
Confidence            53211 1           3788887788999999985

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.01  E-value=5.4e-09  Score=88.27  Aligned_cols=106  Identities=17%  Similarity=0.231  Sum_probs=90.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC-CCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS-YPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~-~~~~~d~V  202 (241)
                      .+++||||.=||..++..|...|++++|+++|++++..+++.+..+..|.. .|+++++++.+.++.+... ..+.||.+
T Consensus        74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa  153 (237)
T KOG1663|consen   74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA  153 (237)
T ss_pred             CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence            478999999999999999999998899999999999999999999888884 6999999999998887664 34779988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..   | |..+       ..+.+++.++||+||.|++
T Consensus       154 FvDa---d-K~nY-------~~y~e~~l~Llr~GGvi~~  181 (237)
T KOG1663|consen  154 FVDA---D-KDNY-------SNYYERLLRLLRVGGVIVV  181 (237)
T ss_pred             EEcc---c-hHHH-------HHHHHHHHhhcccccEEEE
Confidence            7652   2 2222       4899999999999999875

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.98  E-value=3.1e-09  Score=94.69  Aligned_cols=100  Identities=14%  Similarity=0.201  Sum_probs=75.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++++|||+|||+|.+.+..|+.+..  +|+|||-|.-+ +.|++.++.+++.+ ++++.+.+++     +..|...+|.+
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA~--~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEd-----i~LP~eKVDiI  131 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGAR--KVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVED-----IELPVEKVDII  131 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCcc--eEEEEechHHH-HHHHHHHHhcCccceEEEeecceEE-----EecCccceeEE
Confidence            3589999999999999999998754  89999998855 99999999999976 8999999987     33345788877


Q ss_pred             EEeCCCCchhhhhhhcccch----HHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQ----KPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~----~~ll~~l~r~LkpGG~l~  240 (241)
                      +.-+    +-     .-+++    ...|-.=-++|+|||.++
T Consensus       132 vSEW----MG-----y~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  132 VSEW----MG-----YFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             eehh----hh-----HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            6432    20     00112    233444468999999875

>PLN02823 spermine synthase

Probab=98.98  E-value=4.3e-09  Score=94.84  Aligned_cols=112  Identities=14%  Similarity=0.136  Sum_probs=85.8

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA----LSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~----l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++..+||.||+|.|..+..+.+..+. .+++.||+++++++.|++.....+    -++++++.+|+.+++..    .+..
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~-~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----~~~~  176 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTV-EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----RDEK  176 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCC-CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----CCCC
Confidence            34578999999999999998886555 689999999999999999875321    25799999999876532    3578


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHH-HHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVD-SIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~-~l~r~LkpGG~l~~  241 (241)
                      +|+|++..++|+....  -..+....+++ .+.+.|+|||.+++
T Consensus       177 yDvIi~D~~dp~~~~~--~~~Lyt~eF~~~~~~~~L~p~Gvlv~  218 (336)
T PLN02823        177 FDVIIGDLADPVEGGP--CYQLYTKSFYERIVKPKLNPGGIFVT  218 (336)
T ss_pred             ccEEEecCCCccccCc--chhhccHHHHHHHHHHhcCCCcEEEE
Confidence            9999988777642110  01245568998 89999999999863

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.96  E-value=3.7e-10  Score=95.98  Aligned_cols=112  Identities=15%  Similarity=0.219  Sum_probs=75.8

Q ss_pred             hhhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH-h-----------CCCCEEEE
Q 026219          113 IPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-L-----------ALSNIHFL  180 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~-~-----------~l~ni~~~  180 (241)
                      +.+|.+....+.+.+||..|||.|.-+..|+++  + .+|+|+|+|+.+++.+.+.... .           ...+|+++
T Consensus        26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~--G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~  102 (218)
T PF05724_consen   26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ--G-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY  102 (218)
T ss_dssp             HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT--T-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred             HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC--C-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence            345555544445679999999999999999997  4 6899999999999998543211 0           11357899


Q ss_pred             EccccchHHhhccCCCCcEeEEEEe---CCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          181 FANASVSFKQLVSSYPGPLMLVSIL---CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       181 ~~D~~~~~~~~~~~~~~~~d~V~~~---~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++|+.+.-+.    ..+.||.|+=.   ..-| +..+        +++.+.+.++|+|||+++
T Consensus       103 ~gDfF~l~~~----~~g~fD~iyDr~~l~Alp-p~~R--------~~Ya~~l~~ll~p~g~~l  152 (218)
T PF05724_consen  103 CGDFFELPPE----DVGKFDLIYDRTFLCALP-PEMR--------ERYAQQLASLLKPGGRGL  152 (218)
T ss_dssp             ES-TTTGGGS----CHHSEEEEEECSSTTTS--GGGH--------HHHHHHHHHCEEEEEEEE
T ss_pred             EcccccCChh----hcCCceEEEEecccccCC-HHHH--------HHHHHHHHHHhCCCCcEE
Confidence            9999763111    12568877421   1222 2222        499999999999999943

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.94  E-value=9.1e-09  Score=88.29  Aligned_cols=96  Identities=20%  Similarity=0.292  Sum_probs=73.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ....+|||||.|+|.++..+++++|+ .+++..|+ |.+++.+++      .++++++.+|+.+.       .|. .|++
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~-------~P~-~D~~  162 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDP-------LPV-ADVY  162 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH------TTTEEEEES-TTTC-------CSS-ESEE
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc------ccccccccccHHhh-------hcc-ccce
Confidence            34578999999999999999999999 99999999 888888877      36899999999641       244 8888


Q ss_pred             EEeCCC-CchhhhhhhcccchHHHHHHHHhccccC--CEEEc
Q 026219          203 SILCPD-PHFKKKHHKRRVVQKPLVDSIIDYLMPG--GKVYF  241 (241)
Q Consensus       203 ~~~~~~-~~~~~~~~~~r~~~~~ll~~l~r~LkpG--G~l~~  241 (241)
                      ++...- .|.++.       ...+|+++++.|+||  |+|+|
T Consensus       163 ~l~~vLh~~~d~~-------~~~iL~~~~~al~pg~~g~llI  197 (241)
T PF00891_consen  163 LLRHVLHDWSDED-------CVKILRNAAAALKPGKDGRLLI  197 (241)
T ss_dssp             EEESSGGGS-HHH-------HHHHHHHHHHHSEECTTEEEEE
T ss_pred             eeehhhhhcchHH-------HHHHHHHHHHHhCCCCCCeEEE
Confidence            765432 233332       259999999999999  99886

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.90  E-value=1.1e-08  Score=91.53  Aligned_cols=83  Identities=14%  Similarity=0.183  Sum_probs=64.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-CCC-CEEEEE-ccccchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-ALS-NIHFLF-ANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-~l~-ni~~~~-~D~~~~~~~~~~~~~~~~d  200 (241)
                      ...++||||||+|.+...++.+.++ ++++|+|+++.+++.|+++++.+ ++. +++++. .|..+.+..+. ..++.||
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~-~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~-~~~~~fD  191 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYG-WRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII-HKNERFD  191 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc-ccCCceE
Confidence            4578999999999998888888777 89999999999999999999998 674 588764 34433222211 1356899


Q ss_pred             EEEEeCCC
Q 026219          201 LVSILCPD  208 (241)
Q Consensus       201 ~V~~~~~~  208 (241)
                      .|+.+.|-
T Consensus       192 livcNPPf  199 (321)
T PRK11727        192 ATLCNPPF  199 (321)
T ss_pred             EEEeCCCC
Confidence            99888653

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.89  E-value=6.8e-09  Score=86.82  Aligned_cols=105  Identities=19%  Similarity=0.311  Sum_probs=81.0

Q ss_pred             cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEE-EEEccccch-HHhh--ccCCCCcEeEE
Q 026219          127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIH-FLFANASVS-FKQL--VSSYPGPLMLV  202 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~-~~~~D~~~~-~~~~--~~~~~~~~d~V  202 (241)
                      +|||||||||..+..+++.+|+ ....-.|+++......+.++...+++|+. -+..|+.+. .+..  .......+|.|
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i  106 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI  106 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence            5999999999999999999999 89999999999998999999888888853 577788753 1111  01124578877


Q ss_pred             EE-e--CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SI-L--CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~-~--~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +. +  ...||..         .+.+++.+.++|+|||.+++
T Consensus       107 ~~~N~lHI~p~~~---------~~~lf~~a~~~L~~gG~L~~  139 (204)
T PF06080_consen  107 FCINMLHISPWSA---------VEGLFAGAARLLKPGGLLFL  139 (204)
T ss_pred             eehhHHHhcCHHH---------HHHHHHHHHHhCCCCCEEEE
Confidence            53 2  2335542         25999999999999999875

The function of this family is unknown.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.87  E-value=1.9e-09  Score=91.18  Aligned_cols=107  Identities=14%  Similarity=0.142  Sum_probs=81.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC--CCEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL--SNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l--~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+|||.+.|-|.+++..+++..-  +|+.+|.+|+.++.|.-|-=..++  .+++++.+|+.+.+..+   .|.+||.
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~---~D~sfDa  208 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF---DDESFDA  208 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC---Cccccce
Confidence            5789999999999999999998542  799999999999998654322233  25799999998755442   4788997


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |+...|    ..+.+. .+..+.|.++++|+|||||.+|
T Consensus       209 IiHDPP----RfS~Ag-eLYseefY~El~RiLkrgGrlF  242 (287)
T COG2521         209 IIHDPP----RFSLAG-ELYSEEFYRELYRILKRGGRLF  242 (287)
T ss_pred             EeeCCC----ccchhh-hHhHHHHHHHHHHHcCcCCcEE
Confidence            664322    112222 5667899999999999999986

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.86  E-value=1.2e-08  Score=90.06  Aligned_cols=115  Identities=17%  Similarity=0.223  Sum_probs=80.8

Q ss_pred             HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-C-----CEEEEEccccch-HHhh
Q 026219          119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-S-----NIHFLFANASVS-FKQL  191 (241)
Q Consensus       119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~-----ni~~~~~D~~~~-~~~~  191 (241)
                      .+.+ ....++|+|||-|.-++..-+..-+  .++|+||.+..|+-|+++.+.... .     .+.|+.+|.... +...
T Consensus       113 ~y~~-~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~  189 (389)
T KOG1975|consen  113 LYTK-RGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL  189 (389)
T ss_pred             HHhc-cccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence            3444 4788999999999999988776543  799999999999999998775321 1     368899998642 3344


Q ss_pred             ccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          192 VSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       192 ~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++..+.+||+|.+.|..++.-..    ..-.+.+|+++.+.|+|||.++
T Consensus       190 ~e~~dp~fDivScQF~~HYaFet----ee~ar~~l~Nva~~LkpGG~FI  234 (389)
T KOG1975|consen  190 LEFKDPRFDIVSCQFAFHYAFET----EESARIALRNVAKCLKPGGVFI  234 (389)
T ss_pred             ccCCCCCcceeeeeeeEeeeecc----HHHHHHHHHHHHhhcCCCcEEE
Confidence            54445559998765533211000    0112588999999999999986

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=1.7e-08  Score=93.75  Aligned_cols=102  Identities=21%  Similarity=0.208  Sum_probs=78.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .+.+++|+-||.|.+++.+|++.   .+|+|+|+++++++.|++|++.+++.|++|+.+|+.+....+.  ....+|.|+
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~--~~~~~d~Vv  367 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW--EGYKPDVVV  367 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc--ccCCCCEEE
Confidence            35789999999999999999774   4699999999999999999999999999999999988554432  124568777


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..|=.          -.-+.+++.+.+ ++|...+|+
T Consensus       368 vDPPR~----------G~~~~~lk~l~~-~~p~~IvYV  394 (432)
T COG2265         368 VDPPRA----------GADREVLKQLAK-LKPKRIVYV  394 (432)
T ss_pred             ECCCCC----------CCCHHHHHHHHh-cCCCcEEEE
Confidence            764422          122467777666 466666654

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.86  E-value=2.2e-08  Score=88.21  Aligned_cols=119  Identities=18%  Similarity=0.224  Sum_probs=83.9

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhc
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLV  192 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~  192 (241)
                      .|......  +.+|||+-|=||.+++..+....  .+|+.||.|..+++.+++|++.++++  +++++..|+.+.+...-
T Consensus       116 ~~v~~~~~--gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~  191 (286)
T PF10672_consen  116 KWVRKYAK--GKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK  191 (286)
T ss_dssp             HHHHHHCT--TCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH
T ss_pred             HHHHHHcC--CCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh
Confidence            34444443  78999999999999999877543  37999999999999999999999864  79999999988765532


Q ss_pred             cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .  .+.||+|++..|. ..+.+. .-..-+..+++.+.++|+|||.+++
T Consensus       192 ~--~~~fD~IIlDPPs-F~k~~~-~~~~~y~~L~~~a~~ll~~gG~l~~  236 (286)
T PF10672_consen  192 K--GGRFDLIILDPPS-FAKSKF-DLERDYKKLLRRAMKLLKPGGLLLT  236 (286)
T ss_dssp             H--TT-EEEEEE--SS-EESSTC-EHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             c--CCCCCEEEECCCC-CCCCHH-HHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            2  4689999887653 221111 1111345789999999999999864

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.86  E-value=1.2e-08  Score=91.28  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=84.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-cccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-NASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+..|||==||||.+++...-.  + ++++|+|++..|++-|+.|++..+++...+... |+.+     .+..+.++|.|
T Consensus       197 ~G~~vlDPFcGTGgiLiEagl~--G-~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~-----lpl~~~~vdaI  268 (347)
T COG1041         197 RGELVLDPFCGTGGILIEAGLM--G-ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN-----LPLRDNSVDAI  268 (347)
T ss_pred             cCCEeecCcCCccHHHHhhhhc--C-ceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc-----CCCCCCccceE
Confidence            4679999999999999997765  4 689999999999999999999998888777666 9986     33334569988


Q ss_pred             EEeCCCCchhhhhhhc---ccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKR---RVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~---r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +...|-  ......+.   ..++.++++.+.++||+||.+.|
T Consensus       269 atDPPY--Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf  308 (347)
T COG1041         269 ATDPPY--GRSTKIKGEGLDELYEEALESASEVLKPGGRIVF  308 (347)
T ss_pred             EecCCC--CcccccccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence            876543  22221111   13578999999999999998875

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.85  E-value=1.2e-08  Score=89.40  Aligned_cols=58  Identities=21%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      .++.+|||||||+|.++..++++.+   +|+|+|++++|++.++++...   ++++++++|+.+
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~   98 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALK   98 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhc
Confidence            3567899999999999999999854   599999999999999887632   589999999986

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.84  E-value=2.8e-08  Score=82.25  Aligned_cols=107  Identities=16%  Similarity=0.163  Sum_probs=78.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.++||+-||||.+++..+.+...  .|+.||.++..+...++|++..+..+ ++++..|+...+..... ....||+|
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~-~~~~fDiI  118 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK-KGEKFDII  118 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH-CTS-EEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc-cCCCceEE
Confidence            4789999999999999998888655  89999999999999999999988764 99999998776654321 35789998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHH--hccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSII--DYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~--r~LkpGG~l~~  241 (241)
                      ++..|-..  ..      ....+++.+.  .+|+++|.+++
T Consensus       119 flDPPY~~--~~------~~~~~l~~l~~~~~l~~~~~ii~  151 (183)
T PF03602_consen  119 FLDPPYAK--GL------YYEELLELLAENNLLNEDGLIII  151 (183)
T ss_dssp             EE--STTS--CH------HHHHHHHHHHHTTSEEEEEEEEE
T ss_pred             EECCCccc--ch------HHHHHHHHHHHCCCCCCCEEEEE
Confidence            87754321  10      1247777776  89999999875

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.83  E-value=2.2e-08  Score=88.84  Aligned_cols=75  Identities=16%  Similarity=0.199  Sum_probs=61.1

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~-l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||||||+|.++..+++..   .+|+|+|+++.+++.+++++...+ ..+++++.+|+.+.     +  ...+|.
T Consensus        35 ~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~-----~--~~~~d~  104 (294)
T PTZ00338         35 KPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT-----E--FPYFDV  104 (294)
T ss_pred             CCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh-----c--ccccCE
Confidence            346899999999999999999874   469999999999999999988766 46899999999762     1  134677


Q ss_pred             EEEeCC
Q 026219          202 VSILCP  207 (241)
Q Consensus       202 V~~~~~  207 (241)
                      |+.+.|
T Consensus       105 VvaNlP  110 (294)
T PTZ00338        105 CVANVP  110 (294)
T ss_pred             EEecCC
Confidence            776654

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.83  E-value=2e-08  Score=87.34  Aligned_cols=74  Identities=19%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||||||+|.++..++++  . .+++|+|+++.+++.+++++..  ..|++++++|+.+     ++.  ..+|.|
T Consensus        28 ~~~~~VLEIG~G~G~lt~~L~~~--~-~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~-----~~~--~~~d~V   95 (258)
T PRK14896         28 TDGDPVLEIGPGKGALTDELAKR--A-KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALK-----VDL--PEFNKV   95 (258)
T ss_pred             CCcCeEEEEeCccCHHHHHHHHh--C-CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEecccc-----CCc--hhceEE
Confidence            34689999999999999999998  3 4799999999999999988754  4689999999986     221  236777


Q ss_pred             EEeCCC
Q 026219          203 SILCPD  208 (241)
Q Consensus       203 ~~~~~~  208 (241)
                      +.+.|-
T Consensus        96 v~NlPy  101 (258)
T PRK14896         96 VSNLPY  101 (258)
T ss_pred             EEcCCc
Confidence            777553

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.80  E-value=1.5e-09  Score=94.20  Aligned_cols=133  Identities=21%  Similarity=0.317  Sum_probs=83.8

Q ss_pred             ccccCCcccccccccCccceecccccCCCCCCCCCCh-hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEE
Q 026219           77 AELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAPI-PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL  155 (241)
Q Consensus        77 ~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~gi  155 (241)
                      .+++.+++|+||......        |..+...+|+. ..+.+.  .+.+..++|+|||+|.++..    +|. +.++|+
T Consensus         7 ~eleqeyVh~IYd~ia~~--------fs~tr~~~Wp~v~qfl~~--~~~gsv~~d~gCGngky~~~----~p~-~~~ig~   71 (293)
T KOG1331|consen    7 TELEQEYVHSIYDKIATH--------FSATRAAPWPMVRQFLDS--QPTGSVGLDVGCGNGKYLGV----NPL-CLIIGC   71 (293)
T ss_pred             HHHHHHHhHHHHHHhhhh--------ccccccCccHHHHHHHhc--cCCcceeeecccCCcccCcC----CCc-ceeeec
Confidence            344555689999554421        22222233222 112222  24589999999999999977    687 889999


Q ss_pred             eCCHHHHHHHHHHHHHhCCCCE-EEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccc
Q 026219          156 EIRQKLVKRAEFWVQELALSNI-HFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM  234 (241)
Q Consensus       156 Dis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lk  234 (241)
                      |++...+..+++       .+. ....+|+.+     .+..+.+||..+..-.-.|..  ...||   ..+++++.|+|+
T Consensus        72 D~c~~l~~~ak~-------~~~~~~~~ad~l~-----~p~~~~s~d~~lsiavihhls--T~~RR---~~~l~e~~r~lr  134 (293)
T KOG1331|consen   72 DLCTGLLGGAKR-------SGGDNVCRADALK-----LPFREESFDAALSIAVIHHLS--TRERR---ERALEELLRVLR  134 (293)
T ss_pred             chhhhhcccccc-------CCCceeehhhhhc-----CCCCCCccccchhhhhhhhhh--hHHHH---HHHHHHHHHHhc
Confidence            999999988754       233 678899986     343456666442111111221  12233   499999999999


Q ss_pred             cCCEEEc
Q 026219          235 PGGKVYF  241 (241)
Q Consensus       235 pGG~l~~  241 (241)
                      |||...|
T Consensus       135 pgg~~lv  141 (293)
T KOG1331|consen  135 PGGNALV  141 (293)
T ss_pred             CCCceEE
Confidence            9998543

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.80  E-value=3.4e-08  Score=90.42  Aligned_cols=113  Identities=15%  Similarity=0.161  Sum_probs=87.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +.+|||+-|=||.+++..+.....  +|++||+|...++.|++|++-||++  .+.|+++|+.+++..... -...||+|
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~-~g~~fDlI  294 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER-RGEKFDLI  294 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh-cCCcccEE
Confidence            789999999999999999987543  7999999999999999999999974  589999999987765432 23489998


Q ss_pred             EEeCCCCchhhhhhhc--ccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKR--RVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~--r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..|. ....+..+.  .--+..++..+.++|+|||++++
T Consensus       295 ilDPPs-F~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~  334 (393)
T COG1092         295 ILDPPS-FARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVT  334 (393)
T ss_pred             EECCcc-cccCcccchhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            877543 111111110  11345889999999999999874

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.79  E-value=4e-08  Score=85.06  Aligned_cols=112  Identities=16%  Similarity=0.218  Sum_probs=85.7

Q ss_pred             cCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCCEEEEEccccchHHhhccCCC
Q 026219          121 KNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA----LSNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       121 ~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~----l~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      ..++..+||=||-|.|..+..+.+..+. .+++.||+++.+++.|++......    -++++++.+|+..++...    +
T Consensus        73 ~~~~p~~VLiiGgG~G~~~~ell~~~~~-~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~----~  147 (246)
T PF01564_consen   73 LHPNPKRVLIIGGGDGGTARELLKHPPV-ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET----Q  147 (246)
T ss_dssp             HSSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS----S
T ss_pred             cCCCcCceEEEcCCChhhhhhhhhcCCc-ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc----c
Confidence            3345789999999999999999886545 689999999999999999766532    258999999998765432    3


Q ss_pred             C-cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 G-PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~-~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      . .+|+|++...+|.....   . +....+++.+.+.|+|||.+++
T Consensus       148 ~~~yDvIi~D~~dp~~~~~---~-l~t~ef~~~~~~~L~~~Gv~v~  189 (246)
T PF01564_consen  148 EEKYDVIIVDLTDPDGPAP---N-LFTREFYQLCKRRLKPDGVLVL  189 (246)
T ss_dssp             ST-EEEEEEESSSTTSCGG---G-GSSHHHHHHHHHHEEEEEEEEE
T ss_pred             CCcccEEEEeCCCCCCCcc---c-ccCHHHHHHHHhhcCCCcEEEE
Confidence            4 89999998877543221   1 6678999999999999999863

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.78  E-value=7.5e-08  Score=79.79  Aligned_cols=96  Identities=30%  Similarity=0.317  Sum_probs=80.7

Q ss_pred             cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeC
Q 026219          127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC  206 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~  206 (241)
                      +++|||+|.|--++.++=.+|+ .+++.+|.+.+-+...+.-.++.+++|++++++.+++      ......||.|+.--
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~-~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~------~~~~~~fd~v~aRA  123 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPD-LQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE------PEYRESFDVVTARA  123 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TT-SEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH------TTTTT-EEEEEEES
T ss_pred             eEEecCCCCCChhHHHHHhCCC-CcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc------cccCCCccEEEeeh
Confidence            7999999999999999999999 8999999999999999999999999999999999975      12468899998766


Q ss_pred             CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          207 PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       207 ~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+.            ..+++-+.++|++||.+++
T Consensus       124 v~~l------------~~l~~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen  124 VAPL------------DKLLELARPLLKPGGRLLA  146 (184)
T ss_dssp             SSSH------------HHHHHHHGGGEEEEEEEEE
T ss_pred             hcCH------------HHHHHHHHHhcCCCCEEEE
Confidence            5543            3889999999999998874

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.77  E-value=7.1e-08  Score=83.61  Aligned_cols=59  Identities=17%  Similarity=0.211  Sum_probs=51.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      .++.+|||||||+|.++..++++.+   .++++|+++.+++.++++...  .++++++++|+.+
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~   86 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALK   86 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhc
Confidence            3568999999999999999999864   499999999999999887643  3689999999986

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.77  E-value=1.4e-09  Score=91.73  Aligned_cols=98  Identities=20%  Similarity=0.236  Sum_probs=66.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      =.++||+|||||-....|-.+..   +++|+|||++|+++|.++    ++ .=...++|+..+++.   .-+..+|+|+.
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eK----g~-YD~L~~Aea~~Fl~~---~~~er~DLi~A  194 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEK----GL-YDTLYVAEAVLFLED---LTQERFDLIVA  194 (287)
T ss_pred             cceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhc----cc-hHHHHHHHHHHHhhh---ccCCcccchhh
Confidence            46899999999999999877643   599999999999999763    32 113445565443221   23567887743


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .-..|+.-        -.+.++--....|+|||.|.|
T Consensus       195 aDVl~YlG--------~Le~~~~~aa~~L~~gGlfaF  223 (287)
T COG4976         195 ADVLPYLG--------ALEGLFAGAAGLLAPGGLFAF  223 (287)
T ss_pred             hhHHHhhc--------chhhHHHHHHHhcCCCceEEE
Confidence            22112111        114788889999999999876

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.77  E-value=7.2e-08  Score=88.16  Aligned_cols=100  Identities=20%  Similarity=0.124  Sum_probs=81.0

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL  205 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~  205 (241)
                      .+|||+.||+|..++.++.+.++..+|+++|+++++++.+++|++.++..+++++++|+...+...    ...||.|.+.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~----~~~fDvIdlD  121 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR----NRKFHVIDID  121 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh----CCCCCEEEeC
Confidence            589999999999999999985332489999999999999999999998888999999998754331    3468877764


Q ss_pred             CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          206 CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       206 ~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ...    ..        ..+++.+.+.+++||.+++
T Consensus       122 PfG----s~--------~~fld~al~~~~~~glL~v  145 (374)
T TIGR00308       122 PFG----TP--------APFVDSAIQASAERGLLLV  145 (374)
T ss_pred             CCC----Cc--------HHHHHHHHHhcccCCEEEE
Confidence            211    11        3899999999999999875

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=1.2e-08  Score=80.48  Aligned_cols=81  Identities=19%  Similarity=0.185  Sum_probs=63.9

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      +++-++.+++|+|||.|.+.+..+.-.+  -.|+|+||+|++++++++|+++..+ ++.++++|+.+.     ....+.|
T Consensus        44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildl-----e~~~g~f  115 (185)
T KOG3420|consen   44 YGDIEGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDL-----ELKGGIF  115 (185)
T ss_pred             hccccCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccch-----hccCCeE
Confidence            5556789999999999999955544323  4799999999999999999988776 679999999872     2123778


Q ss_pred             eEEEEeCCC
Q 026219          200 MLVSILCPD  208 (241)
Q Consensus       200 d~V~~~~~~  208 (241)
                      |.++++.|.
T Consensus       116 DtaviNppF  124 (185)
T KOG3420|consen  116 DTAVINPPF  124 (185)
T ss_pred             eeEEecCCC
Confidence            988887654

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.76  E-value=2.2e-08  Score=81.24  Aligned_cols=76  Identities=21%  Similarity=0.230  Sum_probs=55.0

Q ss_pred             cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219          127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVSIL  205 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~  205 (241)
                      +|+|+.||.|..++.+|+.+.   +|++||+++..++.|+.|++-+|. ++++++++|+.+.......  ...+|.|++.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~--~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS--NKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB--------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc--cccccEEEEC
Confidence            699999999999999999864   599999999999999999999997 5899999999875433211  1226887766


Q ss_pred             CC
Q 026219          206 CP  207 (241)
Q Consensus       206 ~~  207 (241)
                      .|
T Consensus        77 PP   78 (163)
T PF09445_consen   77 PP   78 (163)
T ss_dssp             --
T ss_pred             CC
Confidence            43

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.76  E-value=5e-08  Score=91.14  Aligned_cols=103  Identities=12%  Similarity=0.175  Sum_probs=72.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC----CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN----PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~----p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      ..+|+|||||+|.+....++..    .. .+|++||.|+.++...+++++.+++ ++|+++.+|+.+.     . .+..+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a-~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v-----~-lpekv  259 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGA-VKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV-----E-LPEKV  259 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCE-SEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS-----C-HSS-E
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCC-eEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC-----C-CCCce
Confidence            4689999999999987766543    23 5899999999999888888788887 5799999999872     2 24689


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |+|+.-.-.....      ..+....|....|.|||||.++
T Consensus       260 DIIVSElLGsfg~------nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  260 DIIVSELLGSFGD------NELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEEE---BTTBT------TTSHHHHHHHGGGGEEEEEEEE
T ss_pred             eEEEEeccCCccc------cccCHHHHHHHHhhcCCCCEEe
Confidence            9886532111000      0123478889999999999875

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.73  E-value=2e-07  Score=82.28  Aligned_cols=116  Identities=19%  Similarity=0.197  Sum_probs=89.0

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ..++..|||+++|.|.-+..+++...+.+.+++.|+++..+...++++++.|..++.....|+....+...   ...||.
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~---~~~fd~  159 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP---ESKFDR  159 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH---TTTEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc---ccccch
Confidence            34578899999999999999999987558999999999999999999999999999999899876433332   346999


Q ss_pred             EEEeCCCCc----hhhhhhhc----------ccchHHHHHHHHhcc----ccCCEEE
Q 026219          202 VSILCPDPH----FKKKHHKR----------RVVQKPLVDSIIDYL----MPGGKVY  240 (241)
Q Consensus       202 V~~~~~~~~----~~~~~~~~----------r~~~~~ll~~l~r~L----kpGG~l~  240 (241)
                      |.+.-|-..    .+++..++          -.++.++|+.+.+.|    ||||+++
T Consensus       160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv  216 (283)
T PF01189_consen  160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV  216 (283)
T ss_dssp             EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE
T ss_pred             hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence            988654210    01111111          126789999999999    9999986

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.71  E-value=7.4e-08  Score=86.60  Aligned_cols=99  Identities=14%  Similarity=0.210  Sum_probs=83.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||.=+|.|.+++.+|+....  .|+++|++|.+++..++|++.|++.+ +..+.+|+.+..+.     -+.+|.|
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~-----~~~aDrI  260 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE-----LGVADRI  260 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc-----cccCCEE
Confidence            3899999999999999999997654  49999999999999999999999976 89999999873222     1678999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..|...            ..++....+.|++||.+.+
T Consensus       261 im~~p~~a------------~~fl~~A~~~~k~~g~iHy  287 (341)
T COG2520         261 IMGLPKSA------------HEFLPLALELLKDGGIIHY  287 (341)
T ss_pred             EeCCCCcc------------hhhHHHHHHHhhcCcEEEE
Confidence            98876521            2888889999999998863

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.70  E-value=6.3e-08  Score=79.39  Aligned_cols=106  Identities=15%  Similarity=0.123  Sum_probs=66.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC--C-CCEEEEEccccchH-HhhccCCCCcE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA--L-SNIHFLFANASVSF-KQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~--l-~ni~~~~~D~~~~~-~~~~~~~~~~~  199 (241)
                      .+.+|||||||+|..++.+++..+. ..|+..|.++ .++.++.|++.++  . .++.+...|=.+.. +...  .+..|
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~~~-~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~  120 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLFGA-ARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSF  120 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSB
T ss_pred             CCceEEEECCccchhHHHHHhccCC-ceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccC
Confidence            4689999999999999999998555 6899999999 9999999998876  2 45777665533222 1222  24678


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|+..-.--..        ...+.+++.+.++|+|+|.+++
T Consensus       121 D~IlasDv~Y~~--------~~~~~L~~tl~~ll~~~~~vl~  154 (173)
T PF10294_consen  121 DVILASDVLYDE--------ELFEPLVRTLKRLLKPNGKVLL  154 (173)
T ss_dssp             SEEEEES--S-G--------GGHHHHHHHHHHHBTT-TTEEE
T ss_pred             CEEEEecccchH--------HHHHHHHHHHHHHhCCCCEEEE
Confidence            987643111011        1236999999999999998664

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.70  E-value=1.7e-07  Score=82.61  Aligned_cols=110  Identities=14%  Similarity=0.180  Sum_probs=88.3

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCCEEEEEccccchHHhhccCCCC
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA----LSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~----l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      .++.++||-||-|.|.++..+.+..+. .+++.|||++.+++.+++.+....    -++++++.+|+.+++..    ...
T Consensus        74 h~~pk~VLiiGgGdG~tlRevlkh~~v-e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~----~~~  148 (282)
T COG0421          74 HPNPKRVLIIGGGDGGTLREVLKHLPV-ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD----CEE  148 (282)
T ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCc-ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh----CCC
Confidence            344469999999999999999998766 799999999999999999876543    35789999999886543    245


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .||+|++...+|-..    -..++...+++.+.+.|+++|.++
T Consensus       149 ~fDvIi~D~tdp~gp----~~~Lft~eFy~~~~~~L~~~Gi~v  187 (282)
T COG0421         149 KFDVIIVDSTDPVGP----AEALFTEEFYEGCRRALKEDGIFV  187 (282)
T ss_pred             cCCEEEEcCCCCCCc----ccccCCHHHHHHHHHhcCCCcEEE
Confidence            899999887776211    124566799999999999999986

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.69  E-value=1.5e-07  Score=83.35  Aligned_cols=89  Identities=11%  Similarity=0.056  Sum_probs=66.8

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      +..+.+...++.++||.+||.|..+..+++..+..+.|+|+|.++++++.|++++.+  ..+++++++|..+.... .+.
T Consensus        10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~-l~~   86 (296)
T PRK00050         10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEV-LAE   86 (296)
T ss_pred             HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHH-HHc
Confidence            344445433467999999999999999999986337999999999999999988765  46899999999874332 221


Q ss_pred             CCCcEeEEEEeC
Q 026219          195 YPGPLMLVSILC  206 (241)
Q Consensus       195 ~~~~~d~V~~~~  206 (241)
                      ...++|.|++.+
T Consensus        87 ~~~~vDgIl~DL   98 (296)
T PRK00050         87 GLGKVDGILLDL   98 (296)
T ss_pred             CCCccCEEEECC
Confidence            112688886543

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=9.6e-08  Score=79.73  Aligned_cols=99  Identities=22%  Similarity=0.354  Sum_probs=77.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCC-cEEEEEeCCHHHHHHHHHHHHHhC--------C--CCEEEEEccccchHHhhc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDS-GNYLGLEIRQKLVKRAEFWVQELA--------L--SNIHFLFANASVSFKQLV  192 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~-~~v~giDis~~~v~~a~~~~~~~~--------l--~ni~~~~~D~~~~~~~~~  192 (241)
                      ++.+.||+|.|+|.++..+++..... ...+|||.-+++++.+++++.+.-        +  .++.++++|....     
T Consensus        82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g-----  156 (237)
T KOG1661|consen   82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG-----  156 (237)
T ss_pred             cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc-----
Confidence            37899999999999999999765321 345999999999999999987642        2  3688999999863     


Q ss_pred             cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+|.|.+--..+              .+.+++...|+|||++++
T Consensus       157 ~~e~a~YDaIhvGAaa~--------------~~pq~l~dqL~~gGrlli  191 (237)
T KOG1661|consen  157 YAEQAPYDAIHVGAAAS--------------ELPQELLDQLKPGGRLLI  191 (237)
T ss_pred             CCccCCcceEEEccCcc--------------ccHHHHHHhhccCCeEEE
Confidence            22347789887765444              777788999999999875

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.68  E-value=8.6e-08  Score=85.12  Aligned_cols=99  Identities=18%  Similarity=0.345  Sum_probs=72.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+..|||+|||+|.+.+..++....  +|++||-|+ |.+.|++.++.+++ .+|.++.|-+++     ++ .|+.+|++
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEd-----ie-LPEk~Dvi  247 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASE-MAQYARKLVASNNLADRITVIPGKIED-----IE-LPEKVDVI  247 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcc--eEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccc-----cc-CchhccEE
Confidence            5689999999999999999998654  899999875 88999999887766 469999998876     33 35778865


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHH---HHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVD---SIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~---~l~r~LkpGG~l~  240 (241)
                      +.. |...+        ++++.+|+   ...+.|||.|.++
T Consensus       248 ISE-PMG~m--------L~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  248 ISE-PMGYM--------LVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             Eec-cchhh--------hhhHHHHHHHHHHHhhcCCCCccc
Confidence            432 22111        22233333   2458999999875

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=6.5e-08  Score=89.97  Aligned_cols=71  Identities=28%  Similarity=0.341  Sum_probs=62.2

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~  193 (241)
                      ...+....+||+.||||.+.+.+++...   .|+|||+++..++-|+.|++.+|++|.+|+++-+++.++.++.
T Consensus       379 ~~l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~  449 (534)
T KOG2187|consen  379 AGLPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLT  449 (534)
T ss_pred             hCCCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcc
Confidence            3445568999999999999999999864   5999999999999999999999999999999988887666554

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=2.7e-07  Score=83.95  Aligned_cols=115  Identities=18%  Similarity=0.218  Sum_probs=84.7

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC-cEe
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDS-GNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG-PLM  200 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~-~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~-~~d  200 (241)
                      .++.+|||++++.|.-+.++++...+. ..|+++|+++.-++..++|+++.|+.|+..++.|........   +.+ .||
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~---~~~~~fD  231 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL---PGGEKFD  231 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccc---cccCcCc
Confidence            357999999999999999999987542 456999999999999999999999999899988886421111   122 488


Q ss_pred             EEEEeCCC---------Cchhhh-----hhhcccchHHHHHHHHhccccCCEEE
Q 026219          201 LVSILCPD---------PHFKKK-----HHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~~~~~~---------~~~~~~-----~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .|.+.-|-         |..+..     -.+--.+|.++|+...++|||||.|+
T Consensus       232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV  285 (355)
T COG0144         232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV  285 (355)
T ss_pred             EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            87664331         111100     01112277899999999999999986

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.63  E-value=8.7e-08  Score=81.98  Aligned_cols=91  Identities=11%  Similarity=0.146  Sum_probs=57.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEccccch-HHhhccCCC-CcEe
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFANASVS-FKQLVSSYP-GPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~-~~~~~~~~~-~~~d  200 (241)
                      ++.+|||+|||||.++..+++...  ..|+|+|++++|+...   ++++  .++ .+...|+... .+. +. ++ ..+|
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~---l~~~--~~v~~~~~~ni~~~~~~~-~~-~d~~~~D  145 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEK---LRQD--ERVKVLERTNIRYVTPAD-IF-PDFATFD  145 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHH---HhcC--CCeeEeecCCcccCCHhH-cC-CCceeee
Confidence            567899999999999999999743  4899999999887652   1111  222 2333344321 111 11 12 3567


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++++...                .++..+.++|+| |.++
T Consensus       146 vsfiS~~----------------~~l~~i~~~l~~-~~~~  168 (228)
T TIGR00478       146 VSFISLI----------------SILPELDLLLNP-NDLT  168 (228)
T ss_pred             EEEeehH----------------hHHHHHHHHhCc-CeEE
Confidence            6555431                467778888888 7655

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.63  E-value=8e-08  Score=87.33  Aligned_cols=59  Identities=24%  Similarity=0.332  Sum_probs=48.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      ...|||+-||.|.+++.+|+...   +|+|||+++.+++.|++|++.++++|++|+.+++.+
T Consensus       197 ~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  197 KGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED  255 (352)
T ss_dssp             TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred             CCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence            34799999999999999999854   599999999999999999999999999999988765

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.58  E-value=3.7e-07  Score=78.80  Aligned_cols=92  Identities=17%  Similarity=0.142  Sum_probs=66.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...++||||.|.|..+..++..+.+   |++.|.|+.|..+.++    .|   ++++  |..++     ..-+.+||+|.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~----kg---~~vl--~~~~w-----~~~~~~fDvIs  156 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSK----KG---FTVL--DIDDW-----QQTDFKFDVIS  156 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHh----CC---CeEE--ehhhh-----hccCCceEEEe
Confidence            3568999999999999999998876   9999999999776543    33   4444  33221     11246799886


Q ss_pred             E-eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 I-LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~-~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      + |.-|... ++        ..+|+.+++.|+|+|.+++
T Consensus       157 cLNvLDRc~-~P--------~~LL~~i~~~l~p~G~lil  186 (265)
T PF05219_consen  157 CLNVLDRCD-RP--------LTLLRDIRRALKPNGRLIL  186 (265)
T ss_pred             ehhhhhccC-CH--------HHHHHHHHHHhCCCCEEEE
Confidence            4 3333211 11        4999999999999999875

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.57  E-value=2.7e-07  Score=72.42  Aligned_cols=59  Identities=22%  Similarity=0.324  Sum_probs=53.5

Q ss_pred             cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      +++|||||.|.++..+++.++. ++++++|.++.+.+.++++++.+++++++++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            4899999999999999999887 7999999999999999999998888788888877654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.56  E-value=1.2e-06  Score=72.30  Aligned_cols=108  Identities=21%  Similarity=0.152  Sum_probs=79.1

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      -.+.++||+-+|+|.+++..+.++..  .++.||.+...+...++|++..+. .+.+++..|+...+.....  ...||+
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~--~~~FDl  117 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT--REPFDL  117 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC--CCcccE
Confidence            35799999999999999999998765  899999999999999999998885 4789999999854433221  225998


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHH--HHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDS--IIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~--l~r~LkpGG~l~~  241 (241)
                      |++..|-.+.       .......+..  -..+|+|||.+++
T Consensus       118 VflDPPy~~~-------l~~~~~~~~~~~~~~~L~~~~~iv~  152 (187)
T COG0742         118 VFLDPPYAKG-------LLDKELALLLLEENGWLKPGALIVV  152 (187)
T ss_pred             EEeCCCCccc-------hhhHHHHHHHHHhcCCcCCCcEEEE
Confidence            8876543211       0100122222  4578999999875

>PRK04148 hypothetical protein; Provisional

Probab=98.55  E-value=6.7e-07  Score=70.19  Aligned_cols=74  Identities=14%  Similarity=0.107  Sum_probs=54.2

Q ss_pred             CCCCCcEEEEcCCccH-HHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEe
Q 026219          122 NPTLPLMVDIGSGSGR-FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~-~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ..++.+|||||||+|. .+..|++.  + .+|+|+|++++.++.++++       .++++++|+.+.-..+.    ..+|
T Consensus        14 ~~~~~kileIG~GfG~~vA~~L~~~--G-~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y----~~a~   79 (134)
T PRK04148         14 KGKNKKIVELGIGFYFKVAKKLKES--G-FDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIY----KNAK   79 (134)
T ss_pred             cccCCEEEEEEecCCHHHHHHHHHC--C-CEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHH----hcCC
Confidence            3345789999999996 88888875  4 5799999999998887653       36899999976322221    4467


Q ss_pred             EEEEeCCCC
Q 026219          201 LVSILCPDP  209 (241)
Q Consensus       201 ~V~~~~~~~  209 (241)
                      +|....|.+
T Consensus        80 liysirpp~   88 (134)
T PRK04148         80 LIYSIRPPR   88 (134)
T ss_pred             EEEEeCCCH
Confidence            777666654

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.53  E-value=1.1e-06  Score=76.91  Aligned_cols=105  Identities=21%  Similarity=0.305  Sum_probs=79.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~-~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ..-+||||.||.|.+.+......|. ...|.-.|.|+..++..++.+++.|+.++ +|.++|+.+. ..+... +-..++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~-~~l~~l-~p~P~l  212 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR-DSLAAL-DPAPTL  212 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH-hHhhcc-CCCCCE
Confidence            4578999999999999999988874 35899999999999999999999999886 9999999863 121111 112233


Q ss_pred             EE-----EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          202 VS-----ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~-----~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++     =.|+|-.          +....++-+.+.|.|||.++
T Consensus       213 ~iVsGL~ElF~Dn~----------lv~~sl~gl~~al~pgG~lI  246 (311)
T PF12147_consen  213 AIVSGLYELFPDND----------LVRRSLAGLARALEPGGYLI  246 (311)
T ss_pred             EEEecchhhCCcHH----------HHHHHHHHHHHHhCCCcEEE
Confidence            32     2445421          22467888999999999987

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.51  E-value=1.2e-06  Score=70.81  Aligned_cols=105  Identities=16%  Similarity=0.154  Sum_probs=75.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.-|||+|.|||-++..+.++. ++ ..+++||.|++.+....+..     +.++++.+|+.+.-..+-+..+..||.|
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~~-~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~v  121 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVRP-ESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSV  121 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCCc-cceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeE
Confidence            45689999999999999988876 44 68999999999998876532     5677999999753223333345567888


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +...|.-.+.-   +++   -++++.+...|.+||.++
T Consensus       122 iS~lPll~~P~---~~~---iaile~~~~rl~~gg~lv  153 (194)
T COG3963         122 ISGLPLLNFPM---HRR---IAILESLLYRLPAGGPLV  153 (194)
T ss_pred             EeccccccCcH---HHH---HHHHHHHHHhcCCCCeEE
Confidence            76544311110   112   389999999999999875

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.47  E-value=2.8e-07  Score=77.19  Aligned_cols=83  Identities=12%  Similarity=0.169  Sum_probs=52.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      |+..+|.|+|||.+.++..+.    ....|...|+-..               |-.+..+|+..     .+..++++|++
T Consensus        71 ~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva~---------------n~~Vtacdia~-----vPL~~~svDv~  126 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVAP---------------NPRVTACDIAN-----VPLEDESVDVA  126 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH------S---EEEEESS-S---------------STTEEES-TTS------S--TT-EEEE
T ss_pred             CCCEEEEECCCchHHHHHhcc----cCceEEEeeccCC---------------CCCEEEecCcc-----CcCCCCceeEE
Confidence            446799999999999986643    2146999999652               22477899975     45568999998


Q ss_pred             EEeCCC---CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPD---PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~---~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +...+.   -|            ..+++|+.|+|||||.+.|
T Consensus       127 VfcLSLMGTn~------------~~fi~EA~RvLK~~G~L~I  156 (219)
T PF05148_consen  127 VFCLSLMGTNW------------PDFIREANRVLKPGGILKI  156 (219)
T ss_dssp             EEES---SS-H------------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEEhhhhCCCc------------HHHHHHHHheeccCcEEEE
Confidence            876643   23            3999999999999999876

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=2.1e-06  Score=74.37  Aligned_cols=99  Identities=17%  Similarity=0.149  Sum_probs=81.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|+|-|+|+|++.-.+++.....++++..|+.+...+.|++..++.++ +|+++.+-|+...   .+...+..+|.
T Consensus       104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~---GF~~ks~~aDa  180 (314)
T KOG2915|consen  104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS---GFLIKSLKADA  180 (314)
T ss_pred             CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC---Cccccccccce
Confidence            3589999999999999999999985558999999999999999999999988 5899999998751   12212466899


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCC
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG  237 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG  237 (241)
                      |++..|.||.             .+-.++..||.+|
T Consensus       181 VFLDlPaPw~-------------AiPha~~~lk~~g  203 (314)
T KOG2915|consen  181 VFLDLPAPWE-------------AIPHAAKILKDEG  203 (314)
T ss_pred             EEEcCCChhh-------------hhhhhHHHhhhcC
Confidence            9999999984             4445677888776

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.44  E-value=4.9e-07  Score=77.78  Aligned_cols=84  Identities=13%  Similarity=0.192  Sum_probs=63.4

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +.+.+|.|+|||-+.++..    -++  .|+..|+-+               .|-+++.+|+.+     .+..|+++|++
T Consensus       179 ~~~~vIaD~GCGEakiA~~----~~~--kV~SfDL~a---------------~~~~V~~cDm~~-----vPl~d~svDva  232 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIASS----ERH--KVHSFDLVA---------------VNERVIACDMRN-----VPLEDESVDVA  232 (325)
T ss_pred             cCceEEEecccchhhhhhc----ccc--ceeeeeeec---------------CCCceeeccccC-----CcCccCcccEE
Confidence            5578999999999998862    333  699999854               255788899987     45568999988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +...+.-. .+        ...++++++|+|+|||.++|
T Consensus       233 V~CLSLMg-tn--------~~df~kEa~RiLk~gG~l~I  262 (325)
T KOG3045|consen  233 VFCLSLMG-TN--------LADFIKEANRILKPGGLLYI  262 (325)
T ss_pred             EeeHhhhc-cc--------HHHHHHHHHHHhccCceEEE
Confidence            76654311 11        14999999999999999986

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.36  E-value=4.9e-06  Score=74.60  Aligned_cols=109  Identities=14%  Similarity=0.146  Sum_probs=72.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC----CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEE--EEccccchHHhhcc-CCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN----PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHF--LFANASVSFKQLVS-SYP  196 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~----p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~--~~~D~~~~~~~~~~-~~~  196 (241)
                      ++..|+|+|||+|.-+..|.+..    .. ..+++||+|.++++.+.+++.....+++.+  +.+|..+.+..+.. ...
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~-~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~  154 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKS-VDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR  154 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCC-ceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence            35689999999999888776654    23 579999999999999999987445566555  88998775433211 011


Q ss_pred             CcEeEEEEe---CCCCchhhhhhhcccchHHHHHHHHh-ccccCCEEEc
Q 026219          197 GPLMLVSIL---CPDPHFKKKHHKRRVVQKPLVDSIID-YLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~---~~~~~~~~~~~~~r~~~~~ll~~l~r-~LkpGG~l~~  241 (241)
                      ....+++..   +.+-.+.+.        ..+|+++.+ .|+|||.|+|
T Consensus       155 ~~~r~~~flGSsiGNf~~~ea--------~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       155 SRPTTILWLGSSIGNFSRPEA--------AAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             CCccEEEEeCccccCCCHHHH--------HHHHHHHHHhhCCCCCEEEE
Confidence            112333211   111111222        489999999 9999999875

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.36  E-value=4.8e-07  Score=67.67  Aligned_cols=100  Identities=22%  Similarity=0.386  Sum_probs=44.6

Q ss_pred             EEEcCCccHHHHHHHHHCCCCc--EEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219          129 VDIGSGSGRFLIWLARRNPDSG--NYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVSIL  205 (241)
Q Consensus       129 LDIGCGtG~~~~~la~~~p~~~--~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~  205 (241)
                      ||||+..|..+..+++..+...  +++++|..+. .+..++.+++.++ .+++++.+|..+.++.+.   +..+|++++.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~---~~~~dli~iD   76 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP---DGPIDLIFID   76 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH---H--EEEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC---CCCEEEEEEC
Confidence            6999999999999888665412  6999999996 4444455554555 479999999988766543   4789998887


Q ss_pred             CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          206 CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       206 ~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      -... .+.        ....++.+.+.|+|||.+++
T Consensus        77 g~H~-~~~--------~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   77 GDHS-YEA--------VLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             S----HHH--------HHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCC-HHH--------HHHHHHHHHHHcCCCeEEEE
Confidence            5321 111        13778889999999999875

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.36  E-value=2.6e-06  Score=72.05  Aligned_cols=97  Identities=25%  Similarity=0.181  Sum_probs=79.1

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCc-EeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGP-LMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~-~d~V~  203 (241)
                      ..+++|||+|.|--++.+|=.+|+ .+|+-+|...+-+...++..++.+++|++++++-+++.     .. ... +|.|+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~-~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~-----~~-~~~~~D~vt  140 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPD-LKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEF-----GQ-EKKQYDVVT  140 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccC-CcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhc-----cc-ccccCcEEE
Confidence            479999999999999999988898 78999999999999999999999999999999999872     21 112 88876


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .--..+-            ..+++-+..+||+||.++
T Consensus       141 sRAva~L------------~~l~e~~~pllk~~g~~~  165 (215)
T COG0357         141 SRAVASL------------NVLLELCLPLLKVGGGFL  165 (215)
T ss_pred             eehccch------------HHHHHHHHHhcccCCcch
Confidence            5433221            377778889999988753

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=2.4e-06  Score=74.16  Aligned_cols=74  Identities=18%  Similarity=0.124  Sum_probs=58.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC-cEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG-PLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~-~~d~V  202 (241)
                      ++..|||||+|.|.+|..|+++.   ..|++||+++.+++..++...  ...|++++++|+.+.     +.+.- ..+.|
T Consensus        30 ~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~-----d~~~l~~~~~v   99 (259)
T COG0030          30 PGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKF-----DFPSLAQPYKV   99 (259)
T ss_pred             CCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcC-----cchhhcCCCEE
Confidence            36899999999999999999984   359999999999999988764  346899999999872     21111 45566


Q ss_pred             EEeCC
Q 026219          203 SILCP  207 (241)
Q Consensus       203 ~~~~~  207 (241)
                      +.+.|
T Consensus       100 VaNlP  104 (259)
T COG0030         100 VANLP  104 (259)
T ss_pred             EEcCC
Confidence            66654

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.34  E-value=2.8e-06  Score=71.10  Aligned_cols=107  Identities=16%  Similarity=0.140  Sum_probs=62.6

Q ss_pred             CCCcEEEEcCCccH----HHHHHHHH----CCCCcEEEEEeCCHHHHHHHHHH--------------HHHh-----C---
Q 026219          124 TLPLMVDIGSGSGR----FLIWLARR----NPDSGNYLGLEIRQKLVKRAEFW--------------VQEL-----A---  173 (241)
Q Consensus       124 ~~~~VLDIGCGtG~----~~~~la~~----~p~~~~v~giDis~~~v~~a~~~--------------~~~~-----~---  173 (241)
                      ..-+|...||+||.    +++.+.+.    .+...+|+|+|+|+.+++.|++-              .++.     +   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            35789999999993    44444452    12126899999999999999852              1111     1   


Q ss_pred             -----C-CCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          174 -----L-SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       174 -----l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                           + ++++|.+.|+.+     ...+.+.+|+|++-...-++...      .+..+++.+++.|+|||.+++
T Consensus       111 ~v~~~lr~~V~F~~~NL~~-----~~~~~~~fD~I~CRNVlIYF~~~------~~~~vl~~l~~~L~pgG~L~l  173 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLD-----PDPPFGRFDLIFCRNVLIYFDPE------TQQRVLRRLHRSLKPGGYLFL  173 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT------S------EEEEEE-SSGGGS-HH------HHHHHHHHHGGGEEEEEEEEE
T ss_pred             eEChHHcCceEEEecccCC-----CCcccCCccEEEecCEEEEeCHH------HHHHHHHHHHHHcCCCCEEEE
Confidence                 1 257777777765     12235789998764333222221      235999999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.32  E-value=7.3e-07  Score=75.00  Aligned_cols=65  Identities=18%  Similarity=0.215  Sum_probs=58.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhh
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQL  191 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~  191 (241)
                      ..++|+|.-||.|..++.++.+++.   |++||++|.-+..|+.|++-+|++ +|.|++||+.+.+..+
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~l  159 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKL  159 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHH
Confidence            3588999999999999999999765   999999999999999999999985 6999999999865544

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.32  E-value=4.6e-06  Score=82.29  Aligned_cols=80  Identities=23%  Similarity=0.216  Sum_probs=61.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC----C-------------------------------------CCcEEEEEeCCHHHHH
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN----P-------------------------------------DSGNYLGLEIRQKLVK  163 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~----p-------------------------------------~~~~v~giDis~~~v~  163 (241)
                      +..++|.+||+|.+++..+...    |                                     ....++|+|+++.+++
T Consensus       191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~  270 (702)
T PRK11783        191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ  270 (702)
T ss_pred             CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence            5789999999999999887531    1                                     0136999999999999


Q ss_pred             HHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEEeCC
Q 026219          164 RAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSILCP  207 (241)
Q Consensus       164 ~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~  207 (241)
                      .|++|++..|+. .+++.++|+.+..   .....+++|.|+.+.|
T Consensus       271 ~A~~N~~~~g~~~~i~~~~~D~~~~~---~~~~~~~~d~IvtNPP  312 (702)
T PRK11783        271 AARKNARRAGVAELITFEVKDVADLK---NPLPKGPTGLVISNPP  312 (702)
T ss_pred             HHHHHHHHcCCCcceEEEeCChhhcc---cccccCCCCEEEECCC
Confidence            999999999985 4899999997621   1111256898888854

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.32  E-value=1.1e-06  Score=72.14  Aligned_cols=105  Identities=16%  Similarity=0.207  Sum_probs=65.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhccC---CCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVSS---YPG  197 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~~---~~~  197 (241)
                      ++.++||+||++|.++..+.++. +. +.|+|+|+.+.           ...+++.++++|+.+.  ...+...   ...
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~-~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPA-GRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTE-EEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeeccccc-ceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhcccccc
Confidence            46899999999999999999987 44 79999999987           2346788888888652  1222221   125


Q ss_pred             cEeEEEEeCCC----CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPD----PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~----~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+|+|+.....    .+..+.. ....+....+.-+...|+|||.+++
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~-~~~~l~~~~l~~a~~~L~~gG~~v~  137 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEF-ISIRLILSQLLLALELLKPGGTFVI  137 (181)
T ss_dssp             SESEEEE-------SSHHSSHH-HHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             CcceeccccccCCCCchhhHHH-HHHHHHHHHHHHHHhhhcCCCEEEE
Confidence            79988765411    1111111 1112233455566788999997763

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.32  E-value=3.5e-06  Score=74.95  Aligned_cols=115  Identities=18%  Similarity=0.180  Sum_probs=72.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHH-------CCCCcEEEEEeCCHHHHHHHHHHHHHhCC--CCEEEEEccccchHHhhcc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARR-------NPDSGNYLGLEIRQKLVKRAEFWVQELAL--SNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~-------~p~~~~v~giDis~~~v~~a~~~~~~~~l--~ni~~~~~D~~~~~~~~~~  193 (241)
                      ..+.+|+|-+||+|.++..+.+.       .+. ..++|+|+++.++..|+-++.-.+.  .+..+..+|.....   ..
T Consensus        45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~-~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~---~~  120 (311)
T PF02384_consen   45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKE-INIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEND---KF  120 (311)
T ss_dssp             -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCC-EEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSH---SC
T ss_pred             cccceeechhhhHHHHHHHHHHhhccccccccc-ceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccc---cc
Confidence            34568999999999999998874       255 6899999999999999988766554  23568888876421   10


Q ss_pred             CCCCcEeEEEEeCCCCch--hhhhh-----------hcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHF--KKKHH-----------KRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~--~~~~~-----------~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .....+|.|+.+.|--..  .....           ......-.+++.+.+.|++||++.+
T Consensus       121 ~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~  181 (311)
T PF02384_consen  121 IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI  181 (311)
T ss_dssp             TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence            013679999888654211  00000           0011223688999999999998653

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.30  E-value=1.7e-06  Score=76.39  Aligned_cols=106  Identities=17%  Similarity=0.212  Sum_probs=67.2

Q ss_pred             CCcEEEEcCCccH----HHHHHHHHC---CCCcEEEEEeCCHHHHHHHHHHH------------------HH-----hC-
Q 026219          125 LPLMVDIGSGSGR----FLIWLARRN---PDSGNYLGLEIRQKLVKRAEFWV------------------QE-----LA-  173 (241)
Q Consensus       125 ~~~VLDIGCGtG~----~~~~la~~~---p~~~~v~giDis~~~v~~a~~~~------------------~~-----~~-  173 (241)
                      .-+|...||+||.    +++.+.+..   +...+|+|+|||+.+++.|++-.                  .+     .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3699999999994    444444533   21268999999999999998631                  00     00 


Q ss_pred             ------C-CCEEEEEccccchHHhhccC-CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          174 ------L-SNIHFLFANASVSFKQLVSS-YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       174 ------l-~ni~~~~~D~~~~~~~~~~~-~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                            + ..|+|.+.|+.+     .+. +.+.||+|++.....++...      ....+++.+++.|+|||.|++
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~-----~~~~~~~~fD~I~cRNvliyF~~~------~~~~vl~~l~~~L~pgG~L~l  260 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLA-----KQWAVPGPFDAIFCRNVMIYFDKT------TQERILRRFVPLLKPDGLLFA  260 (287)
T ss_pred             EEEChHHHccCEEEcccCCC-----CCCccCCCcceeeHhhHHhcCCHH------HHHHHHHHHHHHhCCCcEEEE
Confidence                  1 235666666654     111 24779988652211111110      125999999999999999875

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.30  E-value=3e-06  Score=80.88  Aligned_cols=83  Identities=25%  Similarity=0.279  Sum_probs=58.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCC-------CcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPD-------SGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~-------~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      ..+|||.|||+|.++..++++.+.       ...++|+|+++.+++.++.++...+.-.+.+...|.............+
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~  111 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD  111 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence            468999999999999999876531       1468999999999999999887665224566666654311001111235


Q ss_pred             cEeEEEEeCC
Q 026219          198 PLMLVSILCP  207 (241)
Q Consensus       198 ~~d~V~~~~~  207 (241)
                      .||.|+.+.|
T Consensus       112 ~fD~IIgNPP  121 (524)
T TIGR02987       112 LFDIVITNPP  121 (524)
T ss_pred             cccEEEeCCC
Confidence            7899888765

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.27  E-value=2.3e-06  Score=72.22  Aligned_cols=105  Identities=17%  Similarity=0.116  Sum_probs=68.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...+.||.|+|.|..+..+.-..-+  +|--+|.++..++.|++.+...+..-.++++....++    .+ .++.+|+|+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~--~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f----~P-~~~~YDlIW  127 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFD--EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF----TP-EEGKYDLIW  127 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-S--EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------TT-EEEEE
T ss_pred             CcceEEecccccchhHHHHHHHhcC--EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc----cC-CCCcEeEEE
Confidence            4578999999999999876443323  6999999999999998765432222356777777653    21 247899999


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +....-|..+..      .-++|+++...|+|||.|++
T Consensus       128 ~QW~lghLTD~d------lv~fL~RCk~~L~~~G~Ivv  159 (218)
T PF05891_consen  128 IQWCLGHLTDED------LVAFLKRCKQALKPNGVIVV  159 (218)
T ss_dssp             EES-GGGS-HHH------HHHHHHHHHHHEEEEEEEEE
T ss_pred             ehHhhccCCHHH------HHHHHHHHHHhCcCCcEEEE
Confidence            876443322211      13899999999999999985

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.27  E-value=1.7e-05  Score=67.21  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+||-+|.++|.+..+++.-...++.|+|||.|+....-.-.-+++.  +|+-.+..|+....  -....-+.+|.|+
T Consensus        73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~--~Y~~lv~~VDvI~  148 (229)
T PF01269_consen   73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPE--KYRMLVEMVDVIF  148 (229)
T ss_dssp             TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGG--GGTTTS--EEEEE
T ss_pred             CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChH--HhhcccccccEEE
Confidence            4789999999999999999998753389999999997655554444433  68999999997531  1222235789888


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .....|  .+.        +-++.++...||+||.++|
T Consensus       149 ~DVaQp--~Qa--------~I~~~Na~~fLk~gG~~~i  176 (229)
T PF01269_consen  149 QDVAQP--DQA--------RIAALNARHFLKPGGHLII  176 (229)
T ss_dssp             EE-SST--THH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             ecCCCh--HHH--------HHHHHHHHhhccCCcEEEE
Confidence            777655  222        3778888899999998875

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.26  E-value=1.8e-05  Score=59.42  Aligned_cols=101  Identities=23%  Similarity=0.375  Sum_probs=64.4

Q ss_pred             EEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC-CcEeEEEEeC
Q 026219          128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILC  206 (241)
Q Consensus       128 VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~-~~~d~V~~~~  206 (241)
                      ++|+|||+|... .+.+..+....++|+|+++.++..++......+..++.+..+|....   ..+..+ ..+|.+ ...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~-~~~  126 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG---VLPFEDSASFDLV-ISL  126 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC---CCCCCCCCceeEE-eee
Confidence            999999999977 44444433137999999999999955544331111167888877541   112123 368877 333


Q ss_pred             CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          207 PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       207 ~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ...+...        ....+.++.+.|+|+|.+++
T Consensus       127 ~~~~~~~--------~~~~~~~~~~~l~~~g~~~~  153 (257)
T COG0500         127 LVLHLLP--------PAKALRELLRVLKPGGRLVL  153 (257)
T ss_pred             eehhcCC--------HHHHHHHHHHhcCCCcEEEE
Confidence            2211100        14899999999999998764

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.21  E-value=1.2e-05  Score=73.10  Aligned_cols=110  Identities=16%  Similarity=0.086  Sum_probs=77.6

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCC-------------------------------c-------EEEEEeCCHHHHHHHH
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDS-------------------------------G-------NYLGLEIRQKLVKRAE  166 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~-------------------------------~-------~v~giDis~~~v~~a~  166 (241)
                      +..++|--||+|.+++..|...++.                               .       .++|+|+++.+++.|+
T Consensus       192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak  271 (381)
T COG0116         192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK  271 (381)
T ss_pred             CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence            4679999999999999988876420                               1       3779999999999999


Q ss_pred             HHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhh--cccchHHHHHHHHhccccCCEEEc
Q 026219          167 FWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHK--RRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       167 ~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~--~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+++.|+. -|+|.++|+..     +..+...+|.|+.|.|-  ...-..+  -..++..+.+.+.+.++--+..+|
T Consensus       272 ~NA~~AGv~d~I~f~~~d~~~-----l~~~~~~~gvvI~NPPY--GeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~  342 (381)
T COG0116         272 ANARAAGVGDLIEFKQADATD-----LKEPLEEYGVVISNPPY--GERLGSEALVAKLYREFGRTLKRLLAGWSRYVF  342 (381)
T ss_pred             HHHHhcCCCceEEEEEcchhh-----CCCCCCcCCEEEeCCCc--chhcCChhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence            999999985 59999999986     22222677888777542  2111101  112556777777777776555543

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.19  E-value=1.7e-05  Score=66.86  Aligned_cols=111  Identities=16%  Similarity=0.183  Sum_probs=62.9

Q ss_pred             hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH-------hCC--CCEEEEEccccc
Q 026219          116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-------LAL--SNIHFLFANASV  186 (241)
Q Consensus       116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~-------~~l--~ni~~~~~D~~~  186 (241)
                      +.+...-.++.+++|||||.|...+..+-..+- ...+|||+.+...+.|+...+.       .|.  ..+++.++|+.+
T Consensus        34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~-~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~  112 (205)
T PF08123_consen   34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGC-KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD  112 (205)
T ss_dssp             HHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred             HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCC-cEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence            334443345789999999999999998877654 4699999999998888764432       233  358889999876


Q ss_pred             h--HHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          187 S--FKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       187 ~--~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .  ...++    ..-|+|+++..- ..++       + ...|.+....||+|-+|+
T Consensus       113 ~~~~~~~~----s~AdvVf~Nn~~-F~~~-------l-~~~L~~~~~~lk~G~~II  155 (205)
T PF08123_consen  113 PDFVKDIW----SDADVVFVNNTC-FDPD-------L-NLALAELLLELKPGARII  155 (205)
T ss_dssp             HHHHHHHG----HC-SEEEE--TT-T-HH-------H-HHHHHHHHTTS-TT-EEE
T ss_pred             cHhHhhhh----cCCCEEEEeccc-cCHH-------H-HHHHHHHHhcCCCCCEEE
Confidence            3  12222    224666665321 0000       1 244566777889987764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.15  E-value=9.8e-07  Score=82.25  Aligned_cols=95  Identities=18%  Similarity=0.207  Sum_probs=61.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEE-----eCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGL-----EIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~gi-----Dis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      .-.++||||||+|+++..|..+  +   |+.+     |..+.+++.|.+    .|++-+   .+-+   ....+++|+..
T Consensus       117 ~iR~~LDvGcG~aSF~a~l~~r--~---V~t~s~a~~d~~~~qvqfale----RGvpa~---~~~~---~s~rLPfp~~~  181 (506)
T PF03141_consen  117 GIRTALDVGCGVASFGAYLLER--N---VTTMSFAPNDEHEAQVQFALE----RGVPAM---IGVL---GSQRLPFPSNA  181 (506)
T ss_pred             ceEEEEeccceeehhHHHHhhC--C---ceEEEcccccCCchhhhhhhh----cCcchh---hhhh---ccccccCCccc
Confidence            3468999999999999999887  3   3333     334456666644    254321   1111   01235667899


Q ss_pred             EeEEEE-eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSI-LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~-~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||+|-. .+-.+|....        ..+|-++.|+|+|||.+++
T Consensus       182 fDmvHcsrc~i~W~~~~--------g~~l~evdRvLRpGGyfv~  217 (506)
T PF03141_consen  182 FDMVHCSRCLIPWHPND--------GFLLFEVDRVLRPGGYFVL  217 (506)
T ss_pred             hhhhhcccccccchhcc--------cceeehhhhhhccCceEEe
Confidence            998843 3334555432        2678889999999999864

; GO: 0008168 methyltransferase activity

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.10  E-value=4.5e-05  Score=68.80  Aligned_cols=109  Identities=15%  Similarity=0.193  Sum_probs=86.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH--HHHHhC---C--CCEEEEEccccchHHhhccCCCC
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF--WVQELA---L--SNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~--~~~~~~---l--~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      ..++|=+|-|-|--+..+.+ +|+..+++-+|++|+|++.++.  .+++.+   .  ++++++..|+.+++..-    ..
T Consensus       290 a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a----~~  364 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA----AD  364 (508)
T ss_pred             cceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----cc
Confidence            57899999999999999877 6754799999999999999984  333321   2  46899999998765443    34


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .||.|++.++||.-..   -.|....++...+.+.|+++|.+++
T Consensus       365 ~fD~vIVDl~DP~tps---~~rlYS~eFY~ll~~~l~e~Gl~Vv  405 (508)
T COG4262         365 MFDVVIVDLPDPSTPS---IGRLYSVEFYRLLSRHLAETGLMVV  405 (508)
T ss_pred             cccEEEEeCCCCCCcc---hhhhhhHHHHHHHHHhcCcCceEEE
Confidence            7899999999984332   3466778999999999999999874

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.10  E-value=4e-06  Score=69.12  Aligned_cols=99  Identities=18%  Similarity=0.221  Sum_probs=71.9

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..++.|+|.|+|.+++..++. .+  +|++||.+|.....|++|++-.|..|++++.+|+.+     .++  ..-|.|+.
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~-A~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~-----y~f--e~ADvvic  102 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA-AE--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARD-----YDF--ENADVVIC  102 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh-hc--eEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccc-----ccc--cccceeHH
Confidence            378999999999999988886 44  799999999999999999877788899999999986     221  23455543


Q ss_pred             eCCCCc-hhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          205 LCPDPH-FKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       205 ~~~~~~-~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      -..|.- ..+.       +-..++.+...||-+|+++
T Consensus       103 EmlDTaLi~E~-------qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         103 EMLDTALIEEK-------QVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             HHhhHHhhccc-------ccHHHHHHHHHhhcCCccc
Confidence            332210 0000       1266777777888888764

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.09  E-value=3.3e-06  Score=71.68  Aligned_cols=100  Identities=12%  Similarity=0.113  Sum_probs=73.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ..+.++|||||-|....++..+.-  .+++-+|.|-.|++.++.. +..++ ....+++|-+.     +++.+.++|+|+
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~-----Ldf~ens~DLii  142 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEF-----LDFKENSVDLII  142 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhcc-CCCce-EEEEEecchhc-----ccccccchhhhh
Confidence            357899999999999999988764  4799999999999998652 11222 24556677643     444578999887


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ......|..+-        ...+..+...|||+|.|+
T Consensus       143 sSlslHW~NdL--------Pg~m~~ck~~lKPDg~Fi  171 (325)
T KOG2940|consen  143 SSLSLHWTNDL--------PGSMIQCKLALKPDGLFI  171 (325)
T ss_pred             hhhhhhhhccC--------chHHHHHHHhcCCCccch
Confidence            66555555433        378888999999999875

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.08  E-value=2.4e-05  Score=71.48  Aligned_cols=115  Identities=17%  Similarity=0.169  Sum_probs=89.0

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||.++..|.-+.++|....+.+.|++.|.+.+.+.....++.+.|..|..+...|..+.-...   ++++||.|
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~---~~~~fDRV  316 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE---FPGSFDRV  316 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc---cCccccee
Confidence            358999999999999999999987776899999999999999999999999999888999987532222   34589998


Q ss_pred             EEeCCCC------------chhh--hhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDP------------HFKK--KHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~------------~~~~--~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .+.-|-.            +-+.  .-.+.-.+++++|.....++++||+|+
T Consensus       317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLV  368 (460)
T KOG1122|consen  317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLV  368 (460)
T ss_pred             eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEE
Confidence            7654321            0000  001122377899999999999999886

>PRK00536 speE spermidine synthase; Provisional

Probab=98.07  E-value=4.7e-05  Score=66.43  Aligned_cols=97  Identities=9%  Similarity=-0.019  Sum_probs=72.1

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh----CCCCEEEEEccccchHHhhccCC
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL----ALSNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~----~l~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      ..-|+.++||=||-|-|..+..+.+. +.  +|+-|||++++++.+++.+-..    .-++++++. .+       .+..
T Consensus        68 ~~h~~pk~VLIiGGGDGg~~REvLkh-~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~-------~~~~  136 (262)
T PRK00536         68 CTKKELKEVLIVDGFDLELAHQLFKY-DT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL-------LDLD  136 (262)
T ss_pred             hhCCCCCeEEEEcCCchHHHHHHHCc-CC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh-------hhcc
Confidence            33455689999999999999999996 33  8999999999999999844321    224666664 11       1112


Q ss_pred             CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .+.||+|++....+             +.+.+.+.+.|+|||.++
T Consensus       137 ~~~fDVIIvDs~~~-------------~~fy~~~~~~L~~~Gi~v  168 (262)
T PRK00536        137 IKKYDLIICLQEPD-------------IHKIDGLKRMLKEDGVFI  168 (262)
T ss_pred             CCcCCEEEEcCCCC-------------hHHHHHHHHhcCCCcEEE
Confidence            36799888764322             388899999999999986

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.04  E-value=2.3e-05  Score=61.94  Aligned_cols=62  Identities=29%  Similarity=0.404  Sum_probs=50.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC----CCCcEEEEEeCCHHHHHHHHHHHHHhC--C-CCEEEEEccccc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN----PDSGNYLGLEIRQKLVKRAEFWVQELA--L-SNIHFLFANASV  186 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~----p~~~~v~giDis~~~v~~a~~~~~~~~--l-~ni~~~~~D~~~  186 (241)
                      +...|+|+|||.|.++..++..+    ++ .+|+|||.++..++.++++.++.+  . .++++..++..+
T Consensus        25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   25 RCITVVDLGSGKGYLSRALAHLLCNSSPN-LRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHhcCCC-CeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            46789999999999999999921    55 799999999999999999988776  4 456777766643

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.04  E-value=8.9e-06  Score=74.12  Aligned_cols=101  Identities=21%  Similarity=0.196  Sum_probs=75.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +..++|+|||.|.....++.- .. +.++|+|.++..+.++.......++++ ..++.+|+.+     .++.+..+|.+.
T Consensus       111 ~~~~~~~~~g~~~~~~~i~~f-~~-~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~-----~~fedn~fd~v~  183 (364)
T KOG1269|consen  111 GSKVLDVGTGVGGPSRYIAVF-KK-AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGK-----MPFEDNTFDGVR  183 (364)
T ss_pred             cccccccCcCcCchhHHHHHh-cc-CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhc-----CCCCccccCcEE
Confidence            458999999999999999885 44 689999999999999988877777654 4457778765     233467777764


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .+-.-.+..+.        ..++++++|+++|||.++
T Consensus       184 ~ld~~~~~~~~--------~~~y~Ei~rv~kpGG~~i  212 (364)
T KOG1269|consen  184 FLEVVCHAPDL--------EKVYAEIYRVLKPGGLFI  212 (364)
T ss_pred             EEeecccCCcH--------HHHHHHHhcccCCCceEE
Confidence            43222111111        499999999999999876

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.03  E-value=2.2e-05  Score=68.75  Aligned_cols=101  Identities=18%  Similarity=0.214  Sum_probs=68.4

Q ss_pred             CCcEEEEcCCcc----HHHHHHHHHCCC----CcEEEEEeCCHHHHHHHHHH-----HHHhCC-----------------
Q 026219          125 LPLMVDIGSGSG----RFLIWLARRNPD----SGNYLGLEIRQKLVKRAEFW-----VQELAL-----------------  174 (241)
Q Consensus       125 ~~~VLDIGCGtG----~~~~~la~~~p~----~~~v~giDis~~~v~~a~~~-----~~~~~l-----------------  174 (241)
                      .-+|.-+||+||    ++++.+.+.++.    ..+|+|+|||..+++.|+.=     ....++                 
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            578999999999    566666676642    37899999999999999741     110111                 


Q ss_pred             -------CCEEEEEccccchHHhhccC-CCCcEeEEEE----eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          175 -------SNIHFLFANASVSFKQLVSS-YPGPLMLVSI----LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       175 -------~ni~~~~~D~~~~~~~~~~~-~~~~~d~V~~----~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                             ++|.|...|+.+      +. +.+.||+|++    .|-+..          .+..+++.++..|+|||.+++
T Consensus       177 ~v~~~ir~~V~F~~~NLl~------~~~~~~~fD~IfCRNVLIYFd~~----------~q~~il~~f~~~L~~gG~Lfl  239 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLD------DSPFLGKFDLIFCRNVLIYFDEE----------TQERILRRFADSLKPGGLLFL  239 (268)
T ss_pred             EEChHHhcccEEeecCCCC------CccccCCCCEEEEcceEEeeCHH----------HHHHHHHHHHHHhCCCCEEEE
Confidence                   124444555543      11 3567888743    333321          235999999999999999985

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.01  E-value=2e-05  Score=68.39  Aligned_cols=60  Identities=18%  Similarity=0.327  Sum_probs=51.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASV  186 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~  186 (241)
                      +...|||||-|||+++..|.+..   .+|+++|+++.|+....++.+.... ..++++++|+..
T Consensus        58 ~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK  118 (315)
T KOG0820|consen   58 PTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK  118 (315)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence            46899999999999999999984   4699999999999999888763332 258999999986

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.97  E-value=0.0001  Score=65.66  Aligned_cols=89  Identities=11%  Similarity=0.083  Sum_probs=67.6

Q ss_pred             hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC
Q 026219          116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      ..+.+...++..++|.=+|.|..+..+++..++ +.|+|+|.++.+++.++++++..+ .++.+++++..+....+....
T Consensus        12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~   89 (305)
T TIGR00006        12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELL   89 (305)
T ss_pred             HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcC
Confidence            344444334679999999999999999998877 899999999999999999887543 479999999876433322212


Q ss_pred             CCcEeEEEEeC
Q 026219          196 PGPLMLVSILC  206 (241)
Q Consensus       196 ~~~~d~V~~~~  206 (241)
                      ...+|.|++..
T Consensus        90 ~~~vDgIl~DL  100 (305)
T TIGR00006        90 VTKIDGILVDL  100 (305)
T ss_pred             CCcccEEEEec
Confidence            35688876653

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=5.3e-05  Score=63.58  Aligned_cols=106  Identities=16%  Similarity=0.270  Sum_probs=70.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc--hHHhhccCCC-CcEeE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV--SFKQLVSSYP-GPLML  201 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~--~~~~~~~~~~-~~~d~  201 (241)
                      +.+|+|||+-.|.++..+++.......|+|||+.|-           ....++.++++|+++  .+..+....+ ..+|+
T Consensus        46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv  114 (205)
T COG0293          46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDV  114 (205)
T ss_pred             CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCccHHHHHHHHcCCCCcce
Confidence            789999999999999999998755367999999884           134679999999975  2333332222 33687


Q ss_pred             EEEeCCC-C--chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPD-P--HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~-~--~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+..... .  .....+.+...+....++-+..+|+|||.+++
T Consensus       115 V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~  157 (205)
T COG0293         115 VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA  157 (205)
T ss_pred             EEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence            7654311 0  00011112222456777888899999998863

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.94  E-value=4.3e-05  Score=60.40  Aligned_cols=88  Identities=13%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEEeCCC-CchhhhhhhcccchHHHHHH
Q 026219          151 NYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSILCPD-PHFKKKHHKRRVVQKPLVDS  228 (241)
Q Consensus       151 ~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~-~~~~~~~~~~r~~~~~ll~~  228 (241)
                      +|+|+||.+++++.+++++++.++. +++++..+=.. ++..++  ++.+|.+++|+.- |..++.-..+....-..++.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~-l~~~i~--~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~   77 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN-LDEYIP--EGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA   77 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG-GGGT----S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH-HHhhCc--cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence            5899999999999999999998874 59998865543 333332  2589999887642 32333333333445689999


Q ss_pred             HHhccccCCEEEc
Q 026219          229 IIDYLMPGGKVYF  241 (241)
Q Consensus       229 l~r~LkpGG~l~~  241 (241)
                      +.++|+|||.+.+
T Consensus        78 al~lL~~gG~i~i   90 (140)
T PF06962_consen   78 ALELLKPGGIITI   90 (140)
T ss_dssp             HHHHEEEEEEEEE
T ss_pred             HHHhhccCCEEEE
Confidence            9999999999875

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.92  E-value=5.8e-05  Score=63.61  Aligned_cols=71  Identities=20%  Similarity=0.360  Sum_probs=55.0

Q ss_pred             EEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCc-EeEEEEe
Q 026219          128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGP-LMLVSIL  205 (241)
Q Consensus       128 VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~-~d~V~~~  205 (241)
                      |.||||-.|.+.+.|.+++.- ..++++|+++.-++.|+++++..++. +++++.+|..+.++      ++. +|.|++.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~-~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~------~~e~~d~ivIA   73 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKA-PKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK------PGEDVDTIVIA   73 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------GGG---EEEEE
T ss_pred             CceeccchhHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC------CCCCCCEEEEe
Confidence            689999999999999999876 68999999999999999999999974 69999999876321      233 6766653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.88  E-value=7.2e-05  Score=63.03  Aligned_cols=103  Identities=15%  Similarity=0.187  Sum_probs=72.5

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+||+||-|-|.....+.++.|.  +-+-||..|+++++.+.+.=... .|+.++.+-=.+.++.+   +|+.||.|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L---~d~~FDGI  173 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTL---PDKHFDGI  173 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccc---cccCccee
Confidence            35899999999999999999887776  67789999999998876432111 36777765444333333   46779987


Q ss_pred             EEe-CCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SIL-CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~-~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ... |.. ...+-        ..+.+.+.|+|||+|.+-
T Consensus       174 ~yDTy~e-~yEdl--------~~~hqh~~rLLkP~gv~S  203 (271)
T KOG1709|consen  174 YYDTYSE-LYEDL--------RHFHQHVVRLLKPEGVFS  203 (271)
T ss_pred             Eeechhh-HHHHH--------HHHHHHHhhhcCCCceEE
Confidence            643 322 22111        377889999999999874

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=0.00014  Score=60.63  Aligned_cols=104  Identities=14%  Similarity=0.134  Sum_probs=79.0

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+||=+|..+|.+..+++.-.++ +.++|||.|+.+....-..+++.  +|+-.+..|+....  -....-+.+|+|
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~-G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~--~Y~~~Ve~VDvi  149 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGE-GRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPE--KYRHLVEKVDVI  149 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCC-CcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcH--HhhhhcccccEE
Confidence            45789999999999999999998886 89999999998777666655543  68989999997521  112223568888


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.....|..  .        +-+..++...||+||.+++
T Consensus       150 y~DVAQp~Q--a--------~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         150 YQDVAQPNQ--A--------EILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             EEecCCchH--H--------HHHHHHHHHhcccCCeEEE
Confidence            777766532  2        3778888999999997654

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.81  E-value=7.4e-05  Score=65.13  Aligned_cols=58  Identities=19%  Similarity=0.252  Sum_probs=50.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      ++..|||||.|+|.++..|.+..   .+++++|+++.+++..+++..  ..+|++++.+|+.+
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~   87 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLK   87 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTT
T ss_pred             CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhc
Confidence            57899999999999999999985   379999999999999887654  33689999999987

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.81  E-value=8e-05  Score=66.05  Aligned_cols=80  Identities=16%  Similarity=0.154  Sum_probs=48.0

Q ss_pred             CCcEEEEcCCcc-HHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-CCC-CEEEEEcccc-chHHhhccCCCCcEe
Q 026219          125 LPLMVDIGSGSG-RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-ALS-NIHFLFANAS-VSFKQLVSSYPGPLM  200 (241)
Q Consensus       125 ~~~VLDIGCGtG-~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-~l~-ni~~~~~D~~-~~~~~~~~~~~~~~d  200 (241)
                      .-++||||+|.. .+.+.-++.+ + ++++|.||++..++.|+++++++ ++. +|+++...-. ..++.+.. .+..||
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~-~-W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~-~~e~~d  179 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY-G-WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ-PNERFD  179 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---S-EE
T ss_pred             ceEeecCCccHHHHHHHHhhhhc-C-CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc-ccceee
Confidence            457999999976 5555555555 6 89999999999999999999998 774 6888765322 22222221 345788


Q ss_pred             EEEEeCC
Q 026219          201 LVSILCP  207 (241)
Q Consensus       201 ~V~~~~~  207 (241)
                      ..+++.|
T Consensus       180 ftmCNPP  186 (299)
T PF05971_consen  180 FTMCNPP  186 (299)
T ss_dssp             EEEE---
T ss_pred             EEecCCc
Confidence            8777654

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.73  E-value=0.00024  Score=62.46  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             CcEEEEcCCc-cHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHH-HhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219          126 PLMVDIGSGS-GRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQ-ELAL-SNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       126 ~~VLDIGCGt-G~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~-~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .+|+=||||. -..++.++++. ++ ..|+++|+++++++.+++-++ ..++ .++.|+.+|+.+....     -..+|.
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~-~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-----l~~~Dv  195 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPG-ARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-----LKEYDV  195 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT---EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG---------SE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-----cccCCE
Confidence            5899999995 45566666554 45 789999999999999999877 3455 4699999999752111     256888


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++.---..-+..+       +++++.+.+.++||..+++
T Consensus       196 V~lAalVg~~~e~K-------~~Il~~l~~~m~~ga~l~~  228 (276)
T PF03059_consen  196 VFLAALVGMDAEPK-------EEILEHLAKHMAPGARLVV  228 (276)
T ss_dssp             EEE-TT-S----SH-------HHHHHHHHHHS-TTSEEEE
T ss_pred             EEEhhhcccccchH-------HHHHHHHHhhCCCCcEEEE
Confidence            77643211001111       4999999999999998863

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.71  E-value=0.00026  Score=62.22  Aligned_cols=48  Identities=19%  Similarity=0.215  Sum_probs=40.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL  172 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~  172 (241)
                      ..+|||+|||+|..+..+.+.++...+++++|.|+.|++.++...+..
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            468999999999988888777765468999999999999998876543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.63  E-value=0.00028  Score=63.40  Aligned_cols=95  Identities=19%  Similarity=0.288  Sum_probs=69.1

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ....+|+|.|.|..+..+...+|+   |-|++.+...+..++....    +.|+.+-+|....    .  |.+  |+|++
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~---ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~----~--P~~--daI~m  242 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPH---IKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQD----T--PKG--DAIWM  242 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCC---CceeecCHHHHHhhhhhhc----CCcceeccccccc----C--CCc--CeEEE
Confidence            378999999999999999998887   8899999888777766543    3477778888651    2  233  35544


Q ss_pred             eCC-CCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCP-DPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~-~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ... ..|.++.-       -++|++++..|+|||.|++
T Consensus       243 kWiLhdwtDedc-------vkiLknC~~sL~~~GkIiv  273 (342)
T KOG3178|consen  243 KWILHDWTDEDC-------VKILKNCKKSLPPGGKIIV  273 (342)
T ss_pred             EeecccCChHHH-------HHHHHHHHHhCCCCCEEEE
Confidence            321 12443322       4999999999999999875

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.58  E-value=0.00037  Score=62.81  Aligned_cols=69  Identities=13%  Similarity=0.005  Sum_probs=45.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.++|||||++|.++..+.++  + ..|+|||..+- -...    .  ..+++..+..|.....+     ....+|.++
T Consensus       211 ~g~~vlDLGAsPGGWT~~L~~r--G-~~V~AVD~g~l-~~~L----~--~~~~V~h~~~d~fr~~p-----~~~~vDwvV  275 (357)
T PRK11760        211 PGMRAVDLGAAPGGWTYQLVRR--G-MFVTAVDNGPM-AQSL----M--DTGQVEHLRADGFKFRP-----PRKNVDWLV  275 (357)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHc--C-CEEEEEechhc-CHhh----h--CCCCEEEEeccCcccCC-----CCCCCCEEE
Confidence            5789999999999999999998  4 58999997652 2221    1  22467777766654211     134566665


Q ss_pred             EeCC
Q 026219          204 ILCP  207 (241)
Q Consensus       204 ~~~~  207 (241)
                      ....
T Consensus       276 cDmv  279 (357)
T PRK11760        276 CDMV  279 (357)
T ss_pred             Eecc
Confidence            5443

>PRK10742 putative methyltransferase; Provisional

Probab=97.57  E-value=0.00084  Score=58.03  Aligned_cols=79  Identities=19%  Similarity=0.128  Sum_probs=63.9

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh------C--C-CCEEEEEccccchHHhhccCCC
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL------A--L-SNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~------~--l-~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      ++|||+-+|+|..++.++.+  + +.|+++|.++.+....+++++..      +  + .+++++++|+.+++...    .
T Consensus        90 p~VLD~TAGlG~Da~~las~--G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~----~  162 (250)
T PRK10742         90 PDVVDATAGLGRDAFVLASV--G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI----T  162 (250)
T ss_pred             CEEEECCCCccHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC----C
Confidence            48999999999999999988  5 67999999999999999988874      2  2 57999999998866542    3


Q ss_pred             CcEeEEEEeCCCCch
Q 026219          197 GPLMLVSILCPDPHF  211 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~  211 (241)
                      .++|+|++..+-|+.
T Consensus       163 ~~fDVVYlDPMfp~~  177 (250)
T PRK10742        163 PRPQVVYLDPMFPHK  177 (250)
T ss_pred             CCCcEEEECCCCCCC
Confidence            478998876554443

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.56  E-value=0.00019  Score=59.68  Aligned_cols=70  Identities=21%  Similarity=0.227  Sum_probs=58.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .+++|||+|+|+|-.++..++...  ..|+..|+.|..+..++-|++.++. ++.+...|...        .+..+|++.
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--------~~~~~Dl~L  147 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--------SPPAFDLLL  147 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--------CCcceeEEE
Confidence            478999999999999999888765  4799999999999999999998885 78888888852        256788775


Q ss_pred             E
Q 026219          204 I  204 (241)
Q Consensus       204 ~  204 (241)
                      .
T Consensus       148 a  148 (218)
T COG3897         148 A  148 (218)
T ss_pred             e
Confidence            4

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.44  E-value=0.00013  Score=63.44  Aligned_cols=110  Identities=15%  Similarity=0.175  Sum_probs=64.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh----------------C-----------C-C
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL----------------A-----------L-S  175 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~----------------~-----------l-~  175 (241)
                      ++.++||||||+-.+-..-+..+-.  +|+..|.++..++..++++++.                |           + .
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            4678999999996664443433322  5999999999988777765432                1           1 1


Q ss_pred             CE-EEEEccccchHHhhccC---CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          176 NI-HFLFANASVSFKQLVSS---YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       176 ni-~~~~~D~~~~~~~~~~~---~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .| +++.+|+++.  ..++.   .+..+|+|+..|-....    -+.+..+...++++.++|||||.|++
T Consensus       134 ~Vk~Vv~cDV~~~--~pl~~~~~~p~~~D~v~s~fcLE~a----~~d~~~y~~al~ni~~lLkpGG~Lil  197 (256)
T PF01234_consen  134 AVKQVVPCDVTQP--NPLDPPVVLPPKFDCVISSFCLESA----CKDLDEYRRALRNISSLLKPGGHLIL  197 (256)
T ss_dssp             HEEEEEE--TTSS--STTTTS-SS-SSEEEEEEESSHHHH-----SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hhceEEEeeccCC--CCCCccccCccchhhhhhhHHHHHH----cCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            13 3667888652  11111   12359988776632100    01112346999999999999999874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.41  E-value=0.0011  Score=58.05  Aligned_cols=101  Identities=19%  Similarity=0.173  Sum_probs=66.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH---h----------------------------
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE---L----------------------------  172 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~---~----------------------------  172 (241)
                      +..+||=-|||.|.++..+|++  + -.+.|.|.|--|+-..+-.+..   .                            
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~--G-~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP  132 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL--G-YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP  132 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc--c-ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence            4578999999999999999998  4 5799999999986654432211   0                            


Q ss_pred             ---------CCCCEEEEEccccchHHhhccCC--CCcEeEEEEe-CCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          173 ---------ALSNIHFLFANASVSFKQLVSSY--PGPLMLVSIL-CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       173 ---------~l~ni~~~~~D~~~~~~~~~~~~--~~~~d~V~~~-~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                               ...++....||+.+.    ....  .+.+|.|+.. |.|. .++-        -.+|+.|.++|||||..+
T Consensus       133 Dv~p~~~~~~~~~~sm~aGDF~e~----y~~~~~~~~~d~VvT~FFIDT-A~Ni--------~~Yi~tI~~lLkpgG~WI  199 (270)
T PF07942_consen  133 DVDPSSELPSPSNLSMCAGDFLEV----YGPDENKGSFDVVVTCFFIDT-AENI--------IEYIETIEHLLKPGGYWI  199 (270)
T ss_pred             CcCcccccCCCCceeEecCccEEe----cCCcccCCcccEEEEEEEeec-hHHH--------HHHHHHHHHHhccCCEEE
Confidence                     011344444555442    1111  2578877544 4553 2111        389999999999999764

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.40  E-value=0.00066  Score=60.55  Aligned_cols=90  Identities=16%  Similarity=0.124  Sum_probs=61.7

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      +..+.+...++..++|.=-|.|.++..+.++.++ +.++|+|.++++++.|+++++.. -.++.+++++..+....+...
T Consensus        11 Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~   88 (310)
T PF01795_consen   11 EVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKEL   88 (310)
T ss_dssp             HHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHT
T ss_pred             HHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHc
Confidence            3444454445789999999999999999999998 99999999999999998876543 257999999988754433332


Q ss_pred             -CCCcEeEEEEeC
Q 026219          195 -YPGPLMLVSILC  206 (241)
Q Consensus       195 -~~~~~d~V~~~~  206 (241)
                       ....+|.|++..
T Consensus        89 ~~~~~~dgiL~DL  101 (310)
T PF01795_consen   89 NGINKVDGILFDL  101 (310)
T ss_dssp             TTTS-EEEEEEE-
T ss_pred             cCCCccCEEEEcc
Confidence             345788887653

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.37  E-value=0.0011  Score=60.88  Aligned_cols=100  Identities=18%  Similarity=0.160  Sum_probs=75.1

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC--EEEEEccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN--IHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n--i~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ..+|||.=+|+|.=++.++...++..+|+.-|+|+++++.+++|++.++++.  +++.+.|+...+.    .....||.|
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----~~~~~fD~I  125 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----SRQERFDVI  125 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC----HSTT-EEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh----hccccCCEE
Confidence            3589999999999999999986543689999999999999999999999864  8899999976332    125778988


Q ss_pred             EEe-CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SIL-CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~-~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      -+. |..|             ..+|+.+.+.++.||.|.+
T Consensus       126 DlDPfGSp-------------~pfldsA~~~v~~gGll~v  152 (377)
T PF02005_consen  126 DLDPFGSP-------------APFLDSALQAVKDGGLLCV  152 (377)
T ss_dssp             EE--SS---------------HHHHHHHHHHEEEEEEEEE
T ss_pred             EeCCCCCc-------------cHhHHHHHHHhhcCCEEEE
Confidence            764 3334             3899999999999999875

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.29  E-value=0.001  Score=57.47  Aligned_cols=61  Identities=16%  Similarity=0.246  Sum_probs=48.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      ...+|+|||||.--+++......++ ..++|+||+..+++.........+. +.++...|...
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~-a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~  165 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPG-ATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLS  165 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTT
T ss_pred             CCchhhhhhccCCceehhhcccCCC-cEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeec
Confidence            3689999999999999998777677 7999999999999999998887775 57777778764

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.22  E-value=0.0043  Score=54.94  Aligned_cols=87  Identities=15%  Similarity=0.177  Sum_probs=67.0

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      .+.+...++...+|.=-|.|.++..+.+++++.+.++|+|.++.+++.|+++....+ .++.+++++..+..........
T Consensus        16 i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i   94 (314)
T COG0275          16 VELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGI   94 (314)
T ss_pred             HHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCC
Confidence            344444446899999999999999999999865679999999999999999987765 5899999988764433322223


Q ss_pred             CcEeEEEE
Q 026219          197 GPLMLVSI  204 (241)
Q Consensus       197 ~~~d~V~~  204 (241)
                      +.+|.|.+
T Consensus        95 ~~vDGiL~  102 (314)
T COG0275          95 GKVDGILL  102 (314)
T ss_pred             CceeEEEE
Confidence            56776654

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.14  E-value=0.0026  Score=52.73  Aligned_cols=104  Identities=14%  Similarity=0.216  Sum_probs=65.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-cccchH--HhhccC-CCCcE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-NASVSF--KQLVSS-YPGPL  199 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D~~~~~--~~~~~~-~~~~~  199 (241)
                      +.+|||+||..|.++....++. |. +.|.|||+-.-           ...+.+.++.+ |+++..  ..+++. ++..+
T Consensus        70 ~~~VlD~G~APGsWsQVavqr~~p~-g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V  137 (232)
T KOG4589|consen   70 EDTVLDCGAAPGSWSQVAVQRVNPN-GMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRPV  137 (232)
T ss_pred             CCEEEEccCCCChHHHHHHHhhCCC-ceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence            7899999999999999988876 77 89999999542           13345677776 777632  222222 45678


Q ss_pred             eEEEEeC-CCCchh-hh-hhhcccchHHHHHHHHhccccCCEEE
Q 026219          200 MLVSILC-PDPHFK-KK-HHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       200 d~V~~~~-~~~~~~-~~-~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |+|+... |++... .+ |..-..+..+++--....++|+|.++
T Consensus       138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv  181 (232)
T KOG4589|consen  138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV  181 (232)
T ss_pred             cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence            8876543 222110 01 11111133445555567788999876

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=97.11  E-value=0.0024  Score=52.08  Aligned_cols=110  Identities=17%  Similarity=0.166  Sum_probs=69.2

Q ss_pred             EcCCccHHHHHHHHHCCCCcEEEEEeCC--HHHHHHH---HHHHHHhCCCCEEE-EEccccchHHhhccCCCCcEeEEEE
Q 026219          131 IGSGSGRFLIWLARRNPDSGNYLGLEIR--QKLVKRA---EFWVQELALSNIHF-LFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       131 IGCGtG~~~~~la~~~p~~~~v~giDis--~~~v~~a---~~~~~~~~l~ni~~-~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ||=|.=+++..|++.+....++++.-..  ++..+.-   .+++++..-.++.+ ...|+++.- .........||.|+.
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~-~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLH-KHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCccc-ccccccCCcCCEEEE
Confidence            5667778888899987621566665544  4444332   24555443234444 346777532 222223577999999


Q ss_pred             eCCCCc-----hhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPH-----FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~-----~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +||...     .+..-..+|.+...+++.+.++|+++|.|+|
T Consensus        82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhV  123 (166)
T PF10354_consen   82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHV  123 (166)
T ss_pred             eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            998753     1222234455678999999999999999875

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.11  E-value=0.0029  Score=54.17  Aligned_cols=98  Identities=15%  Similarity=0.141  Sum_probs=64.8

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEccccchHHhhccCCCCcEe
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ..++.++||||+-||.++..+.++...  .|+|+|..-+.+..--+   . . +++ -+...|+....+..+   .+..|
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR---~-d-~rV~~~E~tN~r~l~~~~~---~~~~d  146 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLR---N-D-PRVIVLERTNVRYLTPEDF---TEKPD  146 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHh---c-C-CcEEEEecCChhhCCHHHc---ccCCC
Confidence            356899999999999999999998665  89999999887765321   1 1 333 344556654322222   23456


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .+++..+.-           ....+|-.+..+|+|+|.++
T Consensus       147 ~~v~DvSFI-----------SL~~iLp~l~~l~~~~~~~v  175 (245)
T COG1189         147 LIVIDVSFI-----------SLKLILPALLLLLKDGGDLV  175 (245)
T ss_pred             eEEEEeehh-----------hHHHHHHHHHHhcCCCceEE
Confidence            555433221           11478888899999988765

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.10  E-value=0.0023  Score=54.21  Aligned_cols=75  Identities=19%  Similarity=0.230  Sum_probs=61.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +..+.||||-.|.+...+.+.++. ..+++.|+++..++.|.++++++++ +.++...+|....+    . .+..+|.++
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~-~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l----~-~~d~~d~iv   90 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPA-STAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL----E-LEDEIDVIV   90 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCc-ceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc----C-ccCCcCEEE
Confidence            455999999999999999999988 7999999999999999999999887 46888888886521    1 234577665


Q ss_pred             Ee
Q 026219          204 IL  205 (241)
Q Consensus       204 ~~  205 (241)
                      +.
T Consensus        91 IA   92 (226)
T COG2384          91 IA   92 (226)
T ss_pred             Ee
Confidence            54

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.02  E-value=0.0046  Score=56.09  Aligned_cols=99  Identities=16%  Similarity=0.116  Sum_probs=78.5

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..+|+|.=+|||.=++.++..-+. .+++.-|+||++++.+++|++.+...+...++.|+...+..    ....||.|-+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~----~~~~fd~IDi  127 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE----LHRAFDVIDI  127 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh----cCCCccEEec
Confidence            578999999999999999998776 58999999999999999999988556777888888754322    1366787765


Q ss_pred             e-CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 L-CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~-~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      . |..|             ..+++...+.++.||.+-+
T Consensus       128 DPFGSP-------------aPFlDaA~~s~~~~G~l~v  152 (380)
T COG1867         128 DPFGSP-------------APFLDAALRSVRRGGLLCV  152 (380)
T ss_pred             CCCCCC-------------chHHHHHHHHhhcCCEEEE
Confidence            4 3334             2788888888999998753

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.02  E-value=0.0041  Score=58.19  Aligned_cols=99  Identities=12%  Similarity=0.138  Sum_probs=72.2

Q ss_pred             cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEe-
Q 026219          127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL-  205 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~-  205 (241)
                      ++|-+|||+-.+...+.+..-  -.|+-+|+|+-.++.+..+-. ...+-.++...|+..     ....+++||.|+.- 
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~-----l~fedESFdiVIdkG  122 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQ-----LVFEDESFDIVIDKG  122 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhccc-cCCcceEEEEecchh-----ccCCCcceeEEEecC
Confidence            899999999999999877643  259999999999998876543 222458899999976     34468899977531 


Q ss_pred             -----CCC---CchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          206 -----CPD---PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       206 -----~~~---~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                           +.+   +|..       ......+.++.|+|+|||+++
T Consensus       123 tlDal~~de~a~~~~-------~~v~~~~~eVsrvl~~~gk~~  158 (482)
T KOG2352|consen  123 TLDALFEDEDALLNT-------AHVSNMLDEVSRVLAPGGKYI  158 (482)
T ss_pred             ccccccCCchhhhhh-------HHhhHHHhhHHHHhccCCEEE
Confidence                 221   1110       123588999999999999865

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.94  E-value=0.00015  Score=60.80  Aligned_cols=91  Identities=20%  Similarity=0.212  Sum_probs=59.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..++||+|.|.|..+..++..+.+   |++.|.|..|....+.    .+.   +++.  +.++..     -+-++|+|..
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~fee---vyATElS~tMr~rL~k----k~y---nVl~--~~ew~~-----t~~k~dli~c  175 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFEE---VYATELSWTMRDRLKK----KNY---NVLT--EIEWLQ-----TDVKLDLILC  175 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHHH---HHHHHhhHHHHHHHhh----cCC---ceee--ehhhhh-----cCceeehHHH
Confidence            468999999999999999888755   9999999999887644    222   2221  111110     1344565532


Q ss_pred             -eCCCCchhhhhhhcccchHHHHHHHHhcccc-CCEEEc
Q 026219          205 -LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMP-GGKVYF  241 (241)
Q Consensus       205 -~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lkp-GG~l~~  241 (241)
                       +.-|...         -.-.+++.++.+|+| +|++++
T Consensus       176 lNlLDRc~---------~p~kLL~Di~~vl~psngrviv  205 (288)
T KOG3987|consen  176 LNLLDRCF---------DPFKLLEDIHLVLAPSNGRVIV  205 (288)
T ss_pred             HHHHHhhc---------ChHHHHHHHHHHhccCCCcEEE
Confidence             2212111         003899999999999 888764

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.75  E-value=0.0024  Score=57.60  Aligned_cols=107  Identities=21%  Similarity=0.261  Sum_probs=69.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC-CCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY-PGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~-~~~~d~V  202 (241)
                      ...+|||+|.|.|.-+..+..-+|+.-.++-+|.|+..-++.....+........+...|++.-   ..+.+ ...++++
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~d---Rl~lp~ad~ytl~  189 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTED---RLSLPAADLYTLA  189 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchh---ccCCCccceeehh
Confidence            3467999999999999988888887456888899987776665554443434455566666541   22222 2345555


Q ss_pred             EEeC---CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILC---PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~---~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..   ++...+.        ....++.++.++.|||.++|
T Consensus       190 i~~~eLl~d~~ek~--------i~~~ie~lw~l~~~gg~lVi  223 (484)
T COG5459         190 IVLDELLPDGNEKP--------IQVNIERLWNLLAPGGHLVI  223 (484)
T ss_pred             hhhhhhccccCcch--------HHHHHHHHHHhccCCCeEEE
Confidence            4322   2221111        13589999999999998875

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.75  E-value=0.039  Score=47.50  Aligned_cols=111  Identities=14%  Similarity=0.048  Sum_probs=65.5

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      .|.....+..+.+||=+|=+- -+++.++-..+. .+|+-+|+++.+++..++.+++.|++ ++.++.|+.+.+|.-   
T Consensus        35 ~~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~-~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~---  108 (243)
T PF01861_consen   35 ALMAERGDLEGKRILFLGDDD-LTSLALALTGLP-KRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEE---  108 (243)
T ss_dssp             HHHHHTT-STT-EEEEES-TT--HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TT---
T ss_pred             HHHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCC-CeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHH---
Confidence            455555555688999998443 334444444555 68999999999999999999999986 999999998865443   


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCC-EEE
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG-KVY  240 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG-~l~  240 (241)
                      .-+.||.++...|..  .+.-       .-|+.+....||..| ..+
T Consensus       109 ~~~~fD~f~TDPPyT--~~G~-------~LFlsRgi~~Lk~~g~~gy  146 (243)
T PF01861_consen  109 LRGKFDVFFTDPPYT--PEGL-------KLFLSRGIEALKGEGCAGY  146 (243)
T ss_dssp             TSS-BSEEEE---SS--HHHH-------HHHHHHHHHTB-STT-EEE
T ss_pred             HhcCCCEEEeCCCCC--HHHH-------HHHHHHHHHHhCCCCceEE
Confidence            348899888776543  1111       478888888998666 444

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.74  E-value=0.0079  Score=59.12  Aligned_cols=107  Identities=16%  Similarity=0.164  Sum_probs=65.9

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC-------CC----CcEEEEEeCCH---HHHHHH-----------HHHHHH-----hCC
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN-------PD----SGNYLGLEIRQ---KLVKRA-----------EFWVQE-----LAL  174 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~-------p~----~~~v~giDis~---~~v~~a-----------~~~~~~-----~~l  174 (241)
                      .-+|+|+|-|+|...+...+..       +.    ..+++++|..|   +.+..+           ++..+.     .|+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            4789999999998777665433       21    25899999744   222222           222211     121


Q ss_pred             -------C--CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          175 -------S--NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       175 -------~--ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                             .  +++++.+|+.+.+..+    +..+|.+++.-..|. +    ...+-.+.+++.++++++|||++.
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~----~~~~d~~~lD~FsP~-~----np~~W~~~~~~~l~~~~~~~~~~~  203 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQL----DARADAWFLDGFAPA-K----NPDMWSPNLFNALARLARPGATLA  203 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhc----cccccEEEeCCCCCc-c----ChhhccHHHHHHHHHHhCCCCEEE
Confidence                   1  3456778988755443    356888876532220 1    112344699999999999999874

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.71  E-value=0.0049  Score=53.83  Aligned_cols=104  Identities=16%  Similarity=0.258  Sum_probs=58.3

Q ss_pred             CCcEEEEcCC--ccHHHHHHHHH-CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC--EEEEEccccchH---H-----hh
Q 026219          125 LPLMVDIGSG--SGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQELALSN--IHFLFANASVSF---K-----QL  191 (241)
Q Consensus       125 ~~~VLDIGCG--tG~~~~~la~~-~p~~~~v~giDis~~~v~~a~~~~~~~~l~n--i~~~~~D~~~~~---~-----~~  191 (241)
                      -.-.||||||  |-...-.++++ .|+ ++|+=+|.+|-.+..++..+...  ++  ..++.+|+.+.-   .     .+
T Consensus        69 IrQFLDlGsGlPT~~nvHevAq~~~P~-aRVVYVD~DPvv~ah~ralL~~~--~~g~t~~v~aD~r~p~~iL~~p~~~~~  145 (267)
T PF04672_consen   69 IRQFLDLGSGLPTAGNVHEVAQRVAPD-ARVVYVDNDPVVLAHARALLADN--PRGRTAYVQADLRDPEAILAHPEVRGL  145 (267)
T ss_dssp             --EEEEET--S--SS-HHHHHHHH-TT--EEEEEESSHHHHHCCHHHHTT---TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred             cceEEEcccCCCCCCCHhHHHHhhCCC-ceEEEECCCchHHHHHHhhhcCC--CCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence            3569999999  33445555554 577 99999999999999998877644  45  899999998631   1     11


Q ss_pred             ccCCCCcEeEEE---EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          192 VSSYPGPLMLVS---ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       192 ~~~~~~~~d~V~---~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++ ++..+-+++   ++|.. ..++.        ..+++.+...|.||..|.|
T Consensus       146 lD-~~rPVavll~~vLh~v~-D~~dp--------~~iv~~l~d~lapGS~L~i  188 (267)
T PF04672_consen  146 LD-FDRPVAVLLVAVLHFVP-DDDDP--------AGIVARLRDALAPGSYLAI  188 (267)
T ss_dssp             ---TTS--EEEECT-GGGS--CGCTH--------HHHHHHHHCCS-TT-EEEE
T ss_pred             CC-CCCCeeeeeeeeeccCC-CccCH--------HHHHHHHHHhCCCCceEEE
Confidence            21 233333332   23321 11222        4999999999999998875

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.56  E-value=0.0048  Score=57.17  Aligned_cols=54  Identities=20%  Similarity=0.356  Sum_probs=48.1

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEE
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLF  181 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~  181 (241)
                      .-|||||.|||-+.+..++...+  .|+++|.-..|++.|++-..++|. ++|.++.
T Consensus        68 v~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn  122 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNGMSDKINVIN  122 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence            46999999999999999998876  699999999999999999999987 4687775

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.48  E-value=0.02  Score=54.39  Aligned_cols=115  Identities=17%  Similarity=0.140  Sum_probs=76.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCC---CcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhc-cCCCCc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPD---SGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLV-SSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~---~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~-~~~~~~  198 (241)
                      ...+|.|-.||+|.+....++....   ...++|.|+++.....|+-++--+|.. ++.+..+|.... +... ..-.+.
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~-~~~~~~~~~~~  264 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN-PKHDDKDDKGK  264 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC-CcccccCCccc
Confidence            3568999999999999988776531   167999999999999999998877775 466777766531 1111 111356


Q ss_pred             EeEEEEeCCCC---chhhh----hhhccc---------ch-HHHHHHHHhccccCCEE
Q 026219          199 LMLVSILCPDP---HFKKK----HHKRRV---------VQ-KPLVDSIIDYLMPGGKV  239 (241)
Q Consensus       199 ~d~V~~~~~~~---~~~~~----~~~~r~---------~~-~~ll~~l~r~LkpGG~l  239 (241)
                      ||.|+.+.|..   |....    ...++.         -. ..+++.+...|+|||+.
T Consensus       265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~a  322 (489)
T COG0286         265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRA  322 (489)
T ss_pred             eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceE
Confidence            88877765431   22110    000000         11 68999999999998854

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.47  E-value=0.0096  Score=49.67  Aligned_cols=110  Identities=18%  Similarity=0.185  Sum_probs=61.8

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHH------HHHHHHHHHhCCCCEEEEEccccchHHhhccCCC
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLV------KRAEFWVQELALSNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v------~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      ..+.+|+|+=-|.|.++..++......+.|++.=..+...      ...+...++....|.+.+-.+...     +. ++
T Consensus        47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A-----~~-~p  120 (238)
T COG4798          47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVA-----LG-AP  120 (238)
T ss_pred             CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccc-----cC-CC
Confidence            3478999999999999999998764337888876544311      111111222233455555444332     11 23


Q ss_pred             CcEeEEEEe--CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSIL--CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~--~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ...|.+..+  +.+-+.+.-+   -....++...+++.|||||.+.+
T Consensus       121 q~~d~~~~~~~yhdmh~k~i~---~~~A~~vna~vf~~LKPGGv~~V  164 (238)
T COG4798         121 QKLDLVPTAQNYHDMHNKNIH---PATAAKVNAAVFKALKPGGVYLV  164 (238)
T ss_pred             CcccccccchhhhhhhccccC---cchHHHHHHHHHHhcCCCcEEEE
Confidence            444544321  1211111100   12335888999999999998764

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.45  E-value=0.012  Score=49.59  Aligned_cols=105  Identities=17%  Similarity=0.258  Sum_probs=51.1

Q ss_pred             CCcEEEEcCCccHHHHHHHH---HC-CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccch--HHhhccC-CC
Q 026219          125 LPLMVDIGSGSGRFLIWLAR---RN-PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVS--FKQLVSS-YP  196 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~---~~-p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~--~~~~~~~-~~  196 (241)
                      ..+|+|+|.-.|..++.+|.   .+ +. ++|+|||++........  .+...+ ++|++++||..+.  +...... .+
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~-~~VigiDIdir~~~~~a--~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~  109 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGK-GKVIGIDIDIRPHNRKA--IESHPMSPRITFIQGDSIDPEIVDQVRELASP  109 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT----EEEEEES-GTT--S-G--GGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCC-ceEEEEeCCcchhchHH--HhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence            47899999999999987764   34 55 89999999644322211  111122 5899999998752  1111110 01


Q ss_pred             CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ....+|+.. ++. ..       .-..+-|+....+|++|+.+++
T Consensus       110 ~~~vlVilD-s~H-~~-------~hvl~eL~~y~plv~~G~Y~IV  145 (206)
T PF04989_consen  110 PHPVLVILD-SSH-TH-------EHVLAELEAYAPLVSPGSYLIV  145 (206)
T ss_dssp             -SSEEEEES-S------------SSHHHHHHHHHHT--TT-EEEE
T ss_pred             CCceEEEEC-CCc-cH-------HHHHHHHHHhCccCCCCCEEEE
Confidence            122233322 221 00       0113777889999999999864

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK11524 putative methyltransferase; Provisional

Probab=96.42  E-value=0.0075  Score=53.18  Aligned_cols=46  Identities=15%  Similarity=0.107  Sum_probs=40.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE  171 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~  171 (241)
                      .++..|||--+|+|.+++...+...   +.+|+|++++-++.|+++++.
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHh
Confidence            3589999999999999999888754   599999999999999999853

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.014  Score=46.73  Aligned_cols=66  Identities=21%  Similarity=0.273  Sum_probs=52.4

Q ss_pred             HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccc
Q 026219          119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASV  186 (241)
Q Consensus       119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~  186 (241)
                      .....+..+.+|+|+|-|.+.+..++...  ...+|+|++|..+..++-+.-+.|. +..+|..-|+.+
T Consensus        67 ll~~n~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK  133 (199)
T KOG4058|consen   67 LLRGNPKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK  133 (199)
T ss_pred             HccCCCCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence            34444457899999999999999888752  3578999999999999988777776 357888888765

>PHA01634 hypothetical protein

Probab=96.40  E-value=0.0087  Score=46.62  Aligned_cols=47  Identities=17%  Similarity=0.145  Sum_probs=42.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL  172 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~  172 (241)
                      .+.+|+|||.+-|..++.++-+...  .|+++|.++...+..+++++.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhhh
Confidence            4789999999999999999988765  8999999999999999988755

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.38  E-value=0.021  Score=50.48  Aligned_cols=110  Identities=20%  Similarity=0.325  Sum_probs=85.0

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL--AL--SNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~--~l--~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++..++|=||=|-|.+.....+. +...+++-+|++++.++..++.....  |.  +++.+..||....+...   ..+.
T Consensus       120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~---~~~~  195 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL---KENP  195 (337)
T ss_pred             CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh---ccCC
Confidence            44578999999999999998886 44468999999999999998876653  33  46889999987654443   2578


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +|+|+....+|-.+.-    ..+.+.+++.+.+.||+||.+.
T Consensus       196 ~dVii~dssdpvgpa~----~lf~~~~~~~v~~aLk~dgv~~  233 (337)
T KOG1562|consen  196 FDVIITDSSDPVGPAC----ALFQKPYFGLVLDALKGDGVVC  233 (337)
T ss_pred             ceEEEEecCCccchHH----HHHHHHHHHHHHHhhCCCcEEE
Confidence            9999888877644322    1355788999999999999875

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=96.30  E-value=0.006  Score=48.56  Aligned_cols=113  Identities=14%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      +|.......-..-|||+|=|+|.+=-+|-+.+|+ -.|+.+|.--..-..+       -.+.-.++.+|+.++++. ...
T Consensus        19 ~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~-R~I~vfDR~l~~hp~~-------~P~~~~~ilGdi~~tl~~-~~~   89 (160)
T PF12692_consen   19 NWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPD-RRIYVFDRALACHPSS-------TPPEEDLILGDIRETLPA-LAR   89 (160)
T ss_dssp             HHHHHHTTT--S-EEEE--TTSHHHHHHHHH--S-S-EEEEESS--S-GGG----------GGGEEES-HHHHHHH-HHH
T ss_pred             HHHHHHhcCCCCceEEeccCCCccHHHHHHhCCC-CeEEEEeeecccCCCC-------CCchHheeeccHHHHhHH-HHh
Confidence            5654433333467999999999999999999999 8999999853211111       012236889999988776 222


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +......+-..+......+.-    .....+=.-+..+|.|||.++
T Consensus        90 ~g~~a~laHaD~G~g~~~~d~----a~a~~lspli~~~la~gGi~v  131 (160)
T PF12692_consen   90 FGAGAALAHADIGTGDKEKDD----ATAAWLSPLIAPVLAPGGIMV  131 (160)
T ss_dssp             H-S-EEEEEE----S-HHHHH----HHHHHHHHHHGGGEEEEEEEE
T ss_pred             cCCceEEEEeecCCCCcchhH----HHHHhhhHHHHHHhcCCcEEE
Confidence            334444443333322222211    111233345678899999875

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.30  E-value=0.015  Score=50.02  Aligned_cols=100  Identities=16%  Similarity=0.192  Sum_probs=66.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHH----HHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQK----LVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~----~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      .+.+||=+|.++|....+++.-....+-|+++|.|+.    ++.+|++      -+||-.+.-|+.-......  .-+.+
T Consensus       156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk------RtNiiPIiEDArhP~KYRm--lVgmV  227 (317)
T KOG1596|consen  156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK------RTNIIPIIEDARHPAKYRM--LVGMV  227 (317)
T ss_pred             CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc------cCCceeeeccCCCchheee--eeeeE
Confidence            4789999999999999999887633389999999965    3444432      2688888889874211111  12345


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+|+...+.|  ++.        +.+.-+....||+||-++|
T Consensus       228 DvIFaDvaqp--dq~--------RivaLNA~~FLk~gGhfvi  259 (317)
T KOG1596|consen  228 DVIFADVAQP--DQA--------RIVALNAQYFLKNGGHFVI  259 (317)
T ss_pred             EEEeccCCCc--hhh--------hhhhhhhhhhhccCCeEEE
Confidence            6555544444  222        2444566778999998764

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.28  E-value=0.0064  Score=51.43  Aligned_cols=83  Identities=12%  Similarity=0.105  Sum_probs=54.4

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE--
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS--  203 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~--  203 (241)
                      -++|||||=+......-   .+- ..|+.||+++.               .-.+.+.|+.+. + +.....+.||+|+  
T Consensus        53 lrlLEVGals~~N~~s~---~~~-fdvt~IDLns~---------------~~~I~qqDFm~r-p-lp~~~~e~FdvIs~S  111 (219)
T PF11968_consen   53 LRLLEVGALSTDNACST---SGW-FDVTRIDLNSQ---------------HPGILQQDFMER-P-LPKNESEKFDVISLS  111 (219)
T ss_pred             ceEEeecccCCCCcccc---cCc-eeeEEeecCCC---------------CCCceeeccccC-C-CCCCcccceeEEEEE
Confidence            58999999866655442   333 56999999872               234566777652 0 0111346788774  


Q ss_pred             --EeCCCCchhhhhhhcccchHHHHHHHHhccccCCE
Q 026219          204 --ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGK  238 (241)
Q Consensus       204 --~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~  238 (241)
                        ++|. |.++.+-        +.++.+++.|+|+|.
T Consensus       112 LVLNfV-P~p~~RG--------~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen  112 LVLNFV-PDPKQRG--------EMLRRAHKFLKPPGL  139 (219)
T ss_pred             EEEeeC-CCHHHHH--------HHHHHHHHHhCCCCc
Confidence              4442 2234443        899999999999999

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.23  E-value=0.025  Score=51.34  Aligned_cols=116  Identities=16%  Similarity=0.169  Sum_probs=75.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCC---CCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhc--cC---C
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNP---DSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLV--SS---Y  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p---~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~--~~---~  195 (241)
                      ++.+|||++...|+-+..+.+..-   ..+.|++=|.++..+......+......++.+...|+.. ++...  ..   .
T Consensus       155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~-~p~~~~~~~~~~~  233 (375)
T KOG2198|consen  155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASL-FPNIYLKDGNDKE  233 (375)
T ss_pred             CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeeccccee-ccccccccCchhh
Confidence            478999999999999988877542   124899999999988888776655444567777777653 22221  11   1


Q ss_pred             CCcEeEEEEeCC---C------C--chhhhhhhc----ccchHHHHHHHHhccccCCEEE
Q 026219          196 PGPLMLVSILCP---D------P--HFKKKHHKR----RVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       196 ~~~~d~V~~~~~---~------~--~~~~~~~~~----r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ...||.|.+..|   |      +  |-.-....+    -.++-.++.+..++||+||.++
T Consensus       234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lV  293 (375)
T KOG2198|consen  234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLV  293 (375)
T ss_pred             hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEE
Confidence            234777755432   1      1  111001111    1366789999999999999986

>PRK13699 putative methylase; Provisional

Probab=96.14  E-value=0.017  Score=49.43  Aligned_cols=49  Identities=14%  Similarity=0.318  Sum_probs=41.7

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL  172 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~  172 (241)
                      +.+ ++..|||--||+|+++....+...   +++|+|++++..+.+.+++++.
T Consensus       160 ~s~-~g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        160 FTH-PNAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             hCC-CCCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHH
Confidence            443 588999999999999999887643   5999999999999999988764

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.10  E-value=0.069  Score=45.29  Aligned_cols=112  Identities=13%  Similarity=-0.036  Sum_probs=61.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCC-CcEEEEEeCCHHHHHHHHHHHH--------------------------------
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQ--------------------------------  170 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~-~~~v~giDis~~~v~~a~~~~~--------------------------------  170 (241)
                      ..-++-|-+||.|.++-.+.-..+. ...|+|.|+++++++.|++|+.                                
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            3468999999999998877655432 2479999999999999998721                                


Q ss_pred             ---------Hh-CCCCEEEEEccccchHHh-hccCCCCcEeEEEEeCCC----CchhhhhhhcccchHHHHHHHHhcccc
Q 026219          171 ---------EL-ALSNIHFLFANASVSFKQ-LVSSYPGPLMLVSILCPD----PHFKKKHHKRRVVQKPLVDSIIDYLMP  235 (241)
Q Consensus       171 ---------~~-~l~ni~~~~~D~~~~~~~-~~~~~~~~~d~V~~~~~~----~~~~~~~~~~r~~~~~ll~~l~r~Lkp  235 (241)
                               .. +..-..+.+.|+.+.-.. ..+ -....|+|+...|-    .|.-+...   .-..++|+.++.+|-+
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~~~~~diViTDlPYG~~t~W~g~~~~---~p~~~ml~~l~~vLp~  206 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-AGFTPDIVITDLPYGEMTSWQGEGSG---GPVAQMLNSLAPVLPE  206 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-TT---SEEEEE--CCCSSSTTS---H---HHHHHHHHHHHCCS-T
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-cCCCCCEEEecCCCcccccccCCCCC---CcHHHHHHHHHhhCCC
Confidence                     11 222367788888763211 011 12335877765442    23321110   1225899999999954


Q ss_pred             CCEE
Q 026219          236 GGKV  239 (241)
Q Consensus       236 GG~l  239 (241)
                      ++.+
T Consensus       207 ~sVV  210 (246)
T PF11599_consen  207 RSVV  210 (246)
T ss_dssp             T-EE
T ss_pred             CcEE
Confidence            4444

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.06  E-value=0.035  Score=50.70  Aligned_cols=44  Identities=14%  Similarity=0.080  Sum_probs=37.1

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHH
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW  168 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~  168 (241)
                      ++.+||.+|||. |..+..+++.... ..++++|.+++..+.+++.
T Consensus       184 ~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         184 PGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence            467899999998 9999999998754 4699999999998887663

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.92  E-value=0.0092  Score=49.64  Aligned_cols=47  Identities=21%  Similarity=0.272  Sum_probs=36.2

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF  167 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~  167 (241)
                      ...+.+ ++..|||.-||+|.++....+.+.   +.+|+|++++.++.|++
T Consensus       185 I~~~t~-~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  185 IKASTN-PGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHS--TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred             HHhhhc-cceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHhcC
Confidence            344544 589999999999999999888744   59999999999999864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.87  E-value=0.0069  Score=45.66  Aligned_cols=43  Identities=23%  Similarity=0.516  Sum_probs=30.4

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHH
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQK  160 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~  160 (241)
                      -|.+.....+....+|||||+|-+.-.|.+..   -.=+|+|....
T Consensus        49 LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EG---y~G~GiD~R~R   91 (112)
T PF07757_consen   49 LWRDMYGEQKFQGFVDLGCGNGLLVYILNSEG---YPGWGIDARRR   91 (112)
T ss_pred             HHhcccCCCCCCceEEccCCchHHHHHHHhCC---CCccccccccc
Confidence            35555554445789999999999888877763   23579998553

; GO: 0008168 methyltransferase activity

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.011  Score=47.92  Aligned_cols=104  Identities=18%  Similarity=0.194  Sum_probs=65.8

Q ss_pred             CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh---CCCCEEEEEccccchHHhhccCCCCcEe
Q 026219          125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL---ALSNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~---~l~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      +.+|||+|-| +|--++.+|...|. ..|.-.|-+++.++..++....+   +++.+..+.-+....   ........||
T Consensus        30 g~~ilelgggft~laglmia~~a~~-~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a---qsq~eq~tFD  105 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPD-SSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA---QSQQEQHTFD  105 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCC-ceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh---HHHHhhCccc
Confidence            5789999999 67777777877777 78999999999998887755433   222232333222211   0111134688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .|+..-- -.+++.+       +.+++.|.++|+|.|.-+
T Consensus       106 iIlaADC-lFfdE~h-------~sLvdtIk~lL~p~g~Al  137 (201)
T KOG3201|consen  106 IILAADC-LFFDEHH-------ESLVDTIKSLLRPSGRAL  137 (201)
T ss_pred             EEEeccc-hhHHHHH-------HHHHHHHHHHhCccccee
Confidence            7653210 1222222       599999999999999754

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.75  E-value=0.023  Score=48.64  Aligned_cols=104  Identities=18%  Similarity=0.287  Sum_probs=65.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC----CCCcE----EEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhccC
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN----PDSGN----YLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVSS  194 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~----p~~~~----v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~~  194 (241)
                      -.+++|++...|++...|+++.    +.+.+    +++||+.+.+           .++.+.-+++|++..  ...++..
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~h  110 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEH  110 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHH
Confidence            4689999999999999999874    11122    9999997732           456788889999752  3334443


Q ss_pred             CCC-cEeEEEEeC-CCC---chhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          195 YPG-PLMLVSILC-PDP---HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       195 ~~~-~~d~V~~~~-~~~---~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +.+ .-|+|+..- ||.   |.-+.+-.. -+..+.|+-...+|||||.|+
T Consensus       111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~-qLllaAl~i~t~Vlk~Gg~FV  160 (294)
T KOG1099|consen  111 FGGEKADLVVCDGAPDVTGLHDLDEYVQA-QLLLAALNIATCVLKPGGSFV  160 (294)
T ss_pred             hCCCCccEEEeCCCCCccccccHHHHHHH-HHHHHHHHHHhheecCCCeee
Confidence            443 457666532 221   111111011 122356677789999999985

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.69  E-value=0.0056  Score=54.11  Aligned_cols=76  Identities=11%  Similarity=-0.035  Sum_probs=54.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+|+|+-.|-|.+++.+.-.-.. ..|+++|.+|..++..+++++.++. ....++.+|-..      .-++...|.|
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~------~~~~~~AdrV  266 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN------PKPRLRADRV  266 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc------cCccccchhe
Confidence            4689999999999999954333333 4799999999999999999988765 234555565543      2245666777


Q ss_pred             EEeC
Q 026219          203 SILC  206 (241)
Q Consensus       203 ~~~~  206 (241)
                      .+-.
T Consensus       267 nLGL  270 (351)
T KOG1227|consen  267 NLGL  270 (351)
T ss_pred             eecc
Confidence            6543

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.67  E-value=0.075  Score=48.22  Aligned_cols=97  Identities=20%  Similarity=0.154  Sum_probs=63.5

Q ss_pred             CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-cccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-NASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +.+|+=+||| .|..+..+++..+. .+|+.+|++++.++.|++..   +...+..... |.........  ...-+|.+
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~t--~g~g~D~v  242 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILELT--GGRGADVV  242 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhC---CCeEeecCccccHHHHHHHHh--CCCCCCEE
Confidence            3489999999 58888888998877 79999999999999997632   2111111111 2211111111  01247766


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +-.-..+              ..++.+.+.++|||++.+
T Consensus       243 ie~~G~~--------------~~~~~ai~~~r~gG~v~~  267 (350)
T COG1063         243 IEAVGSP--------------PALDQALEALRPGGTVVV  267 (350)
T ss_pred             EECCCCH--------------HHHHHHHHHhcCCCEEEE
Confidence            5444422              788889999999999864

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.57  E-value=0.046  Score=41.57  Aligned_cols=86  Identities=17%  Similarity=0.176  Sum_probs=56.9

Q ss_pred             CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC-CcEeEEEEeCCCCchh
Q 026219          134 GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLMLVSILCPDPHFK  212 (241)
Q Consensus       134 GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~-~~~d~V~~~~~~~~~~  212 (241)
                      |.|..+..+++...  .+|+++|.++.-.+.+++    .|..  .++..+-.+..+.+....+ ..+|.|+-....+   
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~---   69 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSG---   69 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSSH---
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccc--ccccccccccccccccccccccceEEEEecCcH---
Confidence            56889999999875  699999999998888754    4532  2333222222222222223 4688766544323   


Q ss_pred             hhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          213 KKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       213 ~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                                 ..++....+|+|||++.+
T Consensus        70 -----------~~~~~~~~~l~~~G~~v~   87 (130)
T PF00107_consen   70 -----------DTLQEAIKLLRPGGRIVV   87 (130)
T ss_dssp             -----------HHHHHHHHHEEEEEEEEE
T ss_pred             -----------HHHHHHHHHhccCCEEEE
Confidence                       888999999999999864

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=95.52  E-value=0.036  Score=49.42  Aligned_cols=36  Identities=22%  Similarity=0.121  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHH
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVK  163 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~  163 (241)
                      ..+||=-|||.|.++..|+..+..   +-|=|.|--|+-
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~---~qGNEfSy~Mli  186 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFK---CQGNEFSYFMLI  186 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhccc---ccccHHHHHHHH
Confidence            578999999999999999999765   557788877754

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=95.40  E-value=0.024  Score=53.23  Aligned_cols=115  Identities=14%  Similarity=0.080  Sum_probs=77.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC--CCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS--YPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~--~~~~~d~V  202 (241)
                      ...+|=||-|.|.+...+...+|. ..+++|++.|.|++.|+++..-..-.+.++...|..+.+......  .+..+|++
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~-~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl  374 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPK-FQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL  374 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCc-cceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence            567999999999999999888887 799999999999999998764322223445556666554443322  34668877


Q ss_pred             EEeC--CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILC--PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~--~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+..  ++++.-.- --.-.+.+.+++.+...|.|.|.++|
T Consensus       375 ~~dvds~d~~g~~~-pp~~fva~~~l~~~k~~l~p~g~f~i  414 (482)
T KOG2352|consen  375 MVDVDSKDSHGMQC-PPPAFVAQVALQPVKMILPPRGMFII  414 (482)
T ss_pred             EEECCCCCcccCcC-CchHHHHHHHHHHHhhccCccceEEE
Confidence            6542  21110000 00112557899999999999998875

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.37  E-value=0.02  Score=53.79  Aligned_cols=105  Identities=13%  Similarity=0.151  Sum_probs=79.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +..+|||.=|++|.-++..++..++...|++-|.++..++..++|++.++..+ ++.-+.|+...--. .......||+|
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~-~~~~~~~FDvI  187 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE-HPMVAKFFDVI  187 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh-ccccccccceE
Confidence            35789999999999999999998876789999999999999999999887654 66777888642111 11123567876


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      -+.   |+...         ..||+.+.+.++.||.+.+
T Consensus       188 DLD---PyGs~---------s~FLDsAvqav~~gGLL~v  214 (525)
T KOG1253|consen  188 DLD---PYGSP---------SPFLDSAVQAVRDGGLLCV  214 (525)
T ss_pred             ecC---CCCCc---------cHHHHHHHHHhhcCCEEEE
Confidence            543   22211         3899999999999999864

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.13  E-value=0.11  Score=47.00  Aligned_cols=91  Identities=13%  Similarity=0.195  Sum_probs=60.4

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|+=+|+| .|..++.+|+...  .+|+++|+|++-.+.|++    .|-+  .++...-.+.....    .+.+|.+
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~----lGAd--~~i~~~~~~~~~~~----~~~~d~i  233 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK----LGAD--HVINSSDSDALEAV----KEIADAI  233 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH----hCCc--EEEEcCCchhhHHh----HhhCcEE
Confidence            36777777777 6688888888653  689999999998888765    3432  23332111111122    1237776


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..-+ +              ..++...+.|++||++.+
T Consensus       234 i~tv~-~--------------~~~~~~l~~l~~~G~~v~  257 (339)
T COG1064         234 IDTVG-P--------------ATLEPSLKALRRGGTLVL  257 (339)
T ss_pred             EECCC-h--------------hhHHHHHHHHhcCCEEEE
Confidence            65544 3              677788999999999864

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=95.02  E-value=0.031  Score=50.41  Aligned_cols=111  Identities=18%  Similarity=0.129  Sum_probs=75.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHH-------HHHHHHHHhCC-CC-EEEEEccccchHHhhccC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVK-------RAEFWVQELAL-SN-IHFLFANASVSFKQLVSS  194 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~-------~a~~~~~~~~l-~n-i~~~~~D~~~~~~~~~~~  194 (241)
                      ++..|.|-=-|||+++...+.-  + +.|+|.||+-.++.       ..+.|.+++|. +. +.++.+|....  .+-+ 
T Consensus       208 pGdivyDPFVGTGslLvsaa~F--G-a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~--~~rs-  281 (421)
T KOG2671|consen  208 PGDIVYDPFVGTGSLLVSAAHF--G-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNP--PLRS-  281 (421)
T ss_pred             CCCEEecCccccCceeeehhhh--c-ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCc--chhh-
Confidence            4789999999999999998885  3 57999999988877       44567888885 33 67888888762  1111 


Q ss_pred             CCCcEeEEEEeCCCC-------------------------chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDP-------------------------HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~-------------------------~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       ...||.|+...|--                         .+...+.....+...+|.-.++.|..||++.+
T Consensus       282 -n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~  352 (421)
T KOG2671|consen  282 -NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF  352 (421)
T ss_pred             -cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence             35678777653310                         00011111112445788888999999998864

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=94.86  E-value=0.078  Score=45.55  Aligned_cols=73  Identities=21%  Similarity=0.178  Sum_probs=46.8

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHH---HHHhC-C-----CCEEEEEccccchHHhhccCCC
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW---VQELA-L-----SNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~---~~~~~-l-----~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      .+|||.=+|-|.-++.++..  + ++|+++|.||-+....+.-   ..... .     .+++++++|..+++.    .++
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~--G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~----~~~  149 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASL--G-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR----QPD  149 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHH--T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC----CHS
T ss_pred             CEEEECCCcchHHHHHHHcc--C-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh----hcC
Confidence            58999999999999999976  5 6899999999876665543   32221 1     369999999998644    346


Q ss_pred             CcEeEEEEe
Q 026219          197 GPLMLVSIL  205 (241)
Q Consensus       197 ~~~d~V~~~  205 (241)
                      .++|+|++.
T Consensus       150 ~s~DVVY~D  158 (234)
T PF04445_consen  150 NSFDVVYFD  158 (234)
T ss_dssp             S--SEEEE-
T ss_pred             CCCCEEEEC
Confidence            889988764

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=94.82  E-value=0.11  Score=47.28  Aligned_cols=93  Identities=22%  Similarity=0.225  Sum_probs=58.5

Q ss_pred             ccccccccCCcccccccccCccceecccccCCCCCCCCCC-------h----hhhHHHhcCCCCCcEEEEcCCccHHHHH
Q 026219           73 ALEFAELNLPVSNKITGELGHARIRQHVNPLSSSFTVPAP-------I----PDWSEVYKNPTLPLMVDIGSGSGRFLIW  141 (241)
Q Consensus        73 ~~e~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~VLDIGCGtG~~~~~  141 (241)
                      ..+++++-+-     -++.|||+.+..+-.-.|.++-|..       +    ...++.++.|..-.++|||.|.|.++..
T Consensus        20 f~~fM~~~L~-----~p~~GYYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~D   94 (370)
T COG1565          20 FSDFMELALY-----DPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASD   94 (370)
T ss_pred             HHHHHHHHHc-----CCCCcccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHH
Confidence            4456655552     1245666664444333344433321       1    1123445556667899999999999988


Q ss_pred             HHHHC----C----CCcEEEEEeCCHHHHHHHHHHHHH
Q 026219          142 LARRN----P----DSGNYLGLEIRQKLVKRAEFWVQE  171 (241)
Q Consensus       142 la~~~----p----~~~~v~giDis~~~v~~a~~~~~~  171 (241)
                      +.+..    |    . ..+.-||+|++..++=+++++.
T Consensus        95 iL~~l~~L~P~~~~~-~~~~iiE~s~~L~~~Qk~~L~~  131 (370)
T COG1565          95 ILRTLRRLYPELYEA-LSYYIIEPSPELRARQKETLKA  131 (370)
T ss_pred             HHHHHHHhCHHHHhc-ceEEEEecCHHHHHHHHHHHhc
Confidence            76542    3    4 6899999999998877766654

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.55  E-value=0.23  Score=44.40  Aligned_cols=95  Identities=7%  Similarity=0.090  Sum_probs=57.7

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+||=+|+| .|..+..+++.... .+|+++|.+++.++.+++    .|...  ++..+-.+ +..... ..+.+|.|
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~-~~~~~~-~~g~~D~v  239 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE----MGADK--LVNPQNDD-LDHYKA-EKGYFDVS  239 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH----cCCcE--EecCCccc-HHHHhc-cCCCCCEE
Confidence            36778888887 56777778887543 369999999998887754    35322  22111011 111111 12347766


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +-....+              ..++...+.|++||++++
T Consensus       240 id~~G~~--------------~~~~~~~~~l~~~G~iv~  264 (343)
T PRK09880        240 FEVSGHP--------------SSINTCLEVTRAKGVMVQ  264 (343)
T ss_pred             EECCCCH--------------HHHHHHHHHhhcCCEEEE
Confidence            5333322              567788899999998863

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.53  E-value=0.075  Score=46.64  Aligned_cols=71  Identities=15%  Similarity=0.062  Sum_probs=50.4

Q ss_pred             cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeC
Q 026219          127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC  206 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~  206 (241)
                      +++|+.||.|....-+.+..-  ..++++|+++.+++..+.|.     ++. ++.+|+.+....-.   ...+|+++..+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~-----~~~-~~~~Di~~~~~~~~---~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANF-----PNK-LIEGDITKIDEKDF---IPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhC-----CCC-CccCccccCchhhc---CCCCCEEEeCC
Confidence            589999999999888877642  36899999999998877654     222 56778876322111   24588887776


Q ss_pred             CC
Q 026219          207 PD  208 (241)
Q Consensus       207 ~~  208 (241)
                      |-
T Consensus        71 PC   72 (275)
T cd00315          71 PC   72 (275)
T ss_pred             CC
Confidence            54

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.39  E-value=0.26  Score=36.79  Aligned_cols=68  Identities=18%  Similarity=0.164  Sum_probs=43.7

Q ss_pred             CCccHHHHHHHHHCCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCC
Q 026219          133 SGSGRFLIWLARRNPDSG-NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPD  208 (241)
Q Consensus       133 CGtG~~~~~la~~~p~~~-~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~  208 (241)
                      ||.|.++..+++...... .|+.+|.+++.++.+++       ..+.++.+|+.+.- .+....-...+.+++...+
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-------~~~~~i~gd~~~~~-~l~~a~i~~a~~vv~~~~~   72 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-------EGVEVIYGDATDPE-VLERAGIEKADAVVILTDD   72 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-------TTSEEEES-TTSHH-HHHHTTGGCESEEEEESSS
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-------cccccccccchhhh-HHhhcCccccCEEEEccCC
Confidence            677888888877653223 79999999999887754       23679999998631 1111112456777777654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.12  E-value=0.54  Score=41.31  Aligned_cols=95  Identities=15%  Similarity=0.207  Sum_probs=58.6

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+||..|+| .|..+..+++...  .+|++++.+++..+.+++    .+.+.  ++...-..............+|.+
T Consensus       165 ~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~~~~~~~~D~v  236 (338)
T cd08254         165 PGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGADE--VLNSLDDSPKDKKAAGLGGGFDVI  236 (338)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCCE--EEcCCCcCHHHHHHHhcCCCceEE
Confidence            45678888887 5888888888764  579999999998877643    34422  111111111111101123567865


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      + .+...             ...++++.+.|+++|+++
T Consensus       237 i-d~~g~-------------~~~~~~~~~~l~~~G~~v  260 (338)
T cd08254         237 F-DFVGT-------------QPTFEDAQKAVKPGGRIV  260 (338)
T ss_pred             E-ECCCC-------------HHHHHHHHHHhhcCCEEE
Confidence            4 33221             267888999999999986

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=94.01  E-value=0.12  Score=44.94  Aligned_cols=103  Identities=17%  Similarity=0.159  Sum_probs=58.2

Q ss_pred             CCcEEEEcCCccHHHHHHHH---HC--CCCcEEEEEeCCH--------------------------HHHHHHHHHHHHhC
Q 026219          125 LPLMVDIGSGSGRFLIWLAR---RN--PDSGNYLGLEIRQ--------------------------KLVKRAEFWVQELA  173 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~---~~--p~~~~v~giDis~--------------------------~~v~~a~~~~~~~~  173 (241)
                      .+.|+|.||=.|..++.++.   .+  ++ -++++.|-=+                          ...+..++++.+.+
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~-R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g  153 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPD-RRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG  153 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS---EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCC-CEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence            47899999999987765543   22  33 4689988521                          12333444444445


Q ss_pred             C--CCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          174 L--SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       174 l--~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +  ++++++.|++.++++..   +...+.++.+. .|-.  ++.       ...|+.++..|.|||.|+|
T Consensus       154 l~~~~v~~vkG~F~dTLp~~---p~~~IAll~lD-~DlY--esT-------~~aLe~lyprl~~GGiIi~  210 (248)
T PF05711_consen  154 LLDDNVRFVKGWFPDTLPDA---PIERIALLHLD-CDLY--EST-------KDALEFLYPRLSPGGIIIF  210 (248)
T ss_dssp             TSSTTEEEEES-HHHHCCC----TT--EEEEEE----SH--HHH-------HHHHHHHGGGEEEEEEEEE
T ss_pred             CCcccEEEECCcchhhhccC---CCccEEEEEEe-ccch--HHH-------HHHHHHHHhhcCCCeEEEE
Confidence            4  47999999998765432   23444443333 2221  222       4899999999999999986

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=93.98  E-value=0.045  Score=51.67  Aligned_cols=96  Identities=18%  Similarity=0.167  Sum_probs=56.3

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCH----HHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEe
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQ----KLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~----~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      -..|+|...|.|.++..|...  .   |+-+-..|    +-+...    -..|+-  -.. -|--+    .++.+|..+|
T Consensus       366 iRNVMDMnAg~GGFAAAL~~~--~---VWVMNVVP~~~~ntL~vI----ydRGLI--G~y-hDWCE----~fsTYPRTYD  429 (506)
T PF03141_consen  366 IRNVMDMNAGYGGFAAALIDD--P---VWVMNVVPVSGPNTLPVI----YDRGLI--GVY-HDWCE----AFSTYPRTYD  429 (506)
T ss_pred             eeeeeeecccccHHHHHhccC--C---ceEEEecccCCCCcchhh----hhcccc--hhc-cchhh----ccCCCCcchh
Confidence            357999999999999998764  2   22222222    222221    112331  111 12212    2566789999


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++........     .+.|...+.++-|+-|+|+|||.++|
T Consensus       430 LlHA~~lfs~-----~~~rC~~~~illEmDRILRP~G~~ii  465 (506)
T PF03141_consen  430 LLHADGLFSL-----YKDRCEMEDILLEMDRILRPGGWVII  465 (506)
T ss_pred             heehhhhhhh-----hcccccHHHHHHHhHhhcCCCceEEE
Confidence            8743321111     12345567999999999999999986

; GO: 0008168 methyltransferase activity

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=93.96  E-value=0.45  Score=43.91  Aligned_cols=18  Identities=33%  Similarity=0.374  Sum_probs=14.9

Q ss_pred             CCcEEEEcCCccHHHHHH
Q 026219          125 LPLMVDIGSGSGRFLIWL  142 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~l  142 (241)
                      .-+|+|+|||+|.+++.+
T Consensus        64 ~~~iaDlGcs~G~ntl~~   81 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHI   81 (386)
T ss_pred             ceeEEEecCCCCccHHHH
Confidence            468999999999777654

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.80  E-value=0.41  Score=42.93  Aligned_cols=90  Identities=14%  Similarity=0.190  Sum_probs=54.0

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHH-CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~-~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .+.+||=+||| .|..+..++++ ... .+|+++|.+++.++.+++    .+.  ...+ .+.       .+  +..+|.
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~-~~vi~~~~~~~k~~~a~~----~~~--~~~~-~~~-------~~--~~g~d~  225 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPE-SKLVVFGKHQEKLDLFSF----ADE--TYLI-DDI-------PE--DLAVDH  225 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCC-CcEEEEeCcHhHHHHHhh----cCc--eeeh-hhh-------hh--ccCCcE
Confidence            46889999987 45556666765 444 579999999988887753    221  1111 011       11  112565


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+=.-..+.           ....++...++|++||++++
T Consensus       226 viD~~G~~~-----------~~~~~~~~~~~l~~~G~iv~  254 (341)
T cd08237         226 AFECVGGRG-----------SQSAINQIIDYIRPQGTIGL  254 (341)
T ss_pred             EEECCCCCc-----------cHHHHHHHHHhCcCCcEEEE
Confidence            442222110           02678889999999999863

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.74  E-value=0.21  Score=44.82  Aligned_cols=97  Identities=10%  Similarity=0.082  Sum_probs=62.5

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-c-cc---chHHhhccCCCC
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-N-AS---VSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D-~~---~~~~~~~~~~~~  197 (241)
                      .+.+||=+|+| .|-.+...|+.+.- .+|+.+|++++.++.|++    .|.+.+..... + ..   +.+....+  +.
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g--~~  241 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALG--KK  241 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhcc--cc
Confidence            47899999999 68888889998877 789999999999999987    35443322221 1 11   11122221  12


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+|.++ ...--             +..++.....+++||.+.+
T Consensus       242 ~~d~~~-dCsG~-------------~~~~~aai~a~r~gGt~vl  271 (354)
T KOG0024|consen  242 QPDVTF-DCSGA-------------EVTIRAAIKATRSGGTVVL  271 (354)
T ss_pred             CCCeEE-EccCc-------------hHHHHHHHHHhccCCEEEE
Confidence            345433 33221             2566677888899998653

>PRK11524 putative methyltransferase; Provisional

Probab=93.70  E-value=0.095  Score=46.17  Aligned_cols=63  Identities=14%  Similarity=0.046  Sum_probs=40.2

Q ss_pred             CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhh---h-----hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          176 NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKK---K-----HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       176 ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~---~-----~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.+++++|+.+.+..+   +++++|+|++..|-.....   .     ..+.......++.++.++|||||.|++
T Consensus         8 ~~~i~~gD~~~~l~~l---~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i   78 (284)
T PRK11524          8 AKTIIHGDALTELKKI---PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI   78 (284)
T ss_pred             CCEEEeccHHHHHHhc---ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence            4578999998754332   4688999988654210000   0     000111235789999999999999875

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=93.58  E-value=1.1  Score=38.07  Aligned_cols=78  Identities=18%  Similarity=0.224  Sum_probs=53.5

Q ss_pred             CCCCcEEEEcCCcc----HHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccc-hHHhhccCCC
Q 026219          123 PTLPLMVDIGSGSG----RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASV-SFKQLVSSYP  196 (241)
Q Consensus       123 ~~~~~VLDIGCGtG----~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~-~~~~~~~~~~  196 (241)
                      .+...|+++.|+-|    .+++..|.+.-+ ++++.|-.++.-....++.+...++.+ ++|+.+|..+ .++.    + 
T Consensus        40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~Tg-GR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~----~-  113 (218)
T PF07279_consen   40 WNAKLIVEAWSSGGAISTTIALAAAARQTG-GRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPG----L-  113 (218)
T ss_pred             ccceEEEEEecCCCchHhHHHHHHHHHhcC-CeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhh----c-
Confidence            34678999977654    334444555556 799999999888888888887777755 6999998543 3222    2 


Q ss_pred             CcEeEEEEeC
Q 026219          197 GPLMLVSILC  206 (241)
Q Consensus       197 ~~~d~V~~~~  206 (241)
                      ..+|.+++..
T Consensus       114 ~~iDF~vVDc  123 (218)
T PF07279_consen  114 KGIDFVVVDC  123 (218)
T ss_pred             cCCCEEEEeC
Confidence            3467666665

The function of this family is unknown.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=93.44  E-value=0.11  Score=44.51  Aligned_cols=83  Identities=14%  Similarity=0.145  Sum_probs=54.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-CCC-CEEEEE-ccccchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-ALS-NIHFLF-ANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-~l~-ni~~~~-~D~~~~~~~~~~~~~~~~d  200 (241)
                      ++-++||||.|.-.+=-.+-.+-=+ ++++|.|+++..++.|+..+..+ ++. .|++.. .|-...++.+.. ..+.||
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig-~nE~yd  155 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG-KNERYD  155 (292)
T ss_pred             CceEEEeeccCcccccccccceeec-ceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc-ccceee
Confidence            4678999999876544333333224 78999999999999999999887 554 366643 333222322222 246788


Q ss_pred             EEEEeCCC
Q 026219          201 LVSILCPD  208 (241)
Q Consensus       201 ~V~~~~~~  208 (241)
                      .+..+.|.
T Consensus       156 ~tlCNPPF  163 (292)
T COG3129         156 ATLCNPPF  163 (292)
T ss_pred             eEecCCCc
Confidence            87777543

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=93.43  E-value=0.046  Score=50.61  Aligned_cols=61  Identities=13%  Similarity=0.150  Sum_probs=54.3

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchH
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSF  188 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~  188 (241)
                      +..|-|+-||.|-+++.++++  + +.|++-|.+++++++.+.++..+.+.  +++++..|+.+.+
T Consensus       250 gevv~D~FaGvGPfa~Pa~kK--~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  250 GEVVCDVFAGVGPFALPAAKK--G-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             cchhhhhhcCcCccccchhhc--C-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence            689999999999999999887  5 89999999999999999999887763  5899999987754

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=93.33  E-value=0.14  Score=49.47  Aligned_cols=102  Identities=11%  Similarity=0.200  Sum_probs=62.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch-----HHhhccCCCCc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS-----FKQLVSSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~-----~~~~~~~~~~~  198 (241)
                      +...|||+||..|.++...++..|....|+|||+-|-           ..++|+.-++.|++..     +..+...  ..
T Consensus        44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~c~t~v~dIttd~cr~~l~k~l~t--~~  110 (780)
T KOG1098|consen   44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPNCDTLVEDITTDECRSKLRKILKT--WK  110 (780)
T ss_pred             ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCccchhhhhhhHHHHHHHHHHHHHh--CC
Confidence            3688999999999999999999886578999999873           1346766666777531     1222221  22


Q ss_pred             EeEEEEeC----CCCchhhhhhhcccchHHHHHHHHhccccCCEE
Q 026219          199 LMLVSILC----PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV  239 (241)
Q Consensus       199 ~d~V~~~~----~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l  239 (241)
                      .|+|...-    ...|..+..... .+.-..++-....|+.||.+
T Consensus       111 advVLhDgapnVg~~w~~DA~~q~-~L~l~al~LA~~~l~~~g~f  154 (780)
T KOG1098|consen  111 ADVVLHDGAPNVGGNWVQDAFQQA-CLTLRALKLATEFLAKGGTF  154 (780)
T ss_pred             CcEEeecCCCccchhHHHHHHHhh-HHHHHHHHHHHHHHHhcCcc
Confidence            35443321    113443332111 12224556667778888875

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=93.31  E-value=0.13  Score=44.47  Aligned_cols=54  Identities=26%  Similarity=0.273  Sum_probs=38.0

Q ss_pred             HHhcCCC-CCcEEEEcCCccHHHHHHHHHCCC-------CcEEEEEeCCHHHHHHHHHHHHH
Q 026219          118 EVYKNPT-LPLMVDIGSGSGRFLIWLARRNPD-------SGNYLGLEIRQKLVKRAEFWVQE  171 (241)
Q Consensus       118 ~~~~~~~-~~~VLDIGCGtG~~~~~la~~~p~-------~~~v~giDis~~~v~~a~~~~~~  171 (241)
                      +....|. ..+|+|+|.|+|.++..+.+....       ..+++-||+|+.+.+.-++++..
T Consensus        11 ~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   11 EQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             HHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             HHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            3343343 379999999999999998875432       15899999999998888877654

; PDB: 4F3N_A 1ZKD_B.

>PRK13699 putative methylase; Provisional

Probab=93.21  E-value=0.12  Score=44.07  Aligned_cols=62  Identities=10%  Similarity=0.129  Sum_probs=38.7

Q ss_pred             EEEEEccccchHHhhccCCCCcEeEEEEeCCCCc-hhhhhhh------cccchHHHHHHHHhccccCCEEEc
Q 026219          177 IHFLFANASVSFKQLVSSYPGPLMLVSILCPDPH-FKKKHHK------RRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       177 i~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~-~~~~~~~------~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+++++|+.+.+..+   +++++|+|+...|--- .+....+      .......++++++|+|||||.+++
T Consensus         2 ~~l~~gD~le~l~~l---pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARF---PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhC---CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            367889998765443   5799999876643210 0000000      001235788999999999998763

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.19  E-value=1.2  Score=37.38  Aligned_cols=96  Identities=16%  Similarity=0.157  Sum_probs=57.9

Q ss_pred             CCCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+||-.|+|+ |..+..+++...  .++++++.+++..+.+++    .+...  ++...-.+............+|.
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~~~~~~~~d~  204 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE----LGADH--VIDYKEEDLEEELRLTGGGGADV  204 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCce--eccCCcCCHHHHHHHhcCCCCCE
Confidence            3578899999995 777777777654  589999999887776643    23221  12111111111111112355787


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++.....+              ..++.+.+.|+++|+++
T Consensus       205 vi~~~~~~--------------~~~~~~~~~l~~~G~~v  229 (271)
T cd05188         205 VIDAVGGP--------------ETLAQALRLLRPGGRIV  229 (271)
T ss_pred             EEECCCCH--------------HHHHHHHHhcccCCEEE
Confidence            76543321              45667788899999876

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.99  E-value=0.22  Score=45.67  Aligned_cols=67  Identities=12%  Similarity=0.028  Sum_probs=58.4

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      +.++.++.|+|++|-.|.-+.+++.-..+.+.++|.|.+.+..+..++-++..|.+++..+.+|+..
T Consensus       209 l~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~  275 (413)
T KOG2360|consen  209 LDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLN  275 (413)
T ss_pred             cCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccC
Confidence            4445679999999999999999998766448999999999999999998888898888888999986

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.91  E-value=0.86  Score=43.66  Aligned_cols=42  Identities=19%  Similarity=0.180  Sum_probs=35.0

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF  167 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~  167 (241)
                      .+.+|+=+|+| .|..++..++...  ..|+++|++++.++.+++
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes  206 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            47899999999 6778888888764  479999999998888765

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=92.53  E-value=0.4  Score=42.15  Aligned_cols=70  Identities=14%  Similarity=0.053  Sum_probs=49.9

Q ss_pred             cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeC
Q 026219          127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC  206 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~  206 (241)
                      +++|+-||.|.+..-+.+..-  -.+.++|+++.+++.-+.|.     +  ....+|+.+.....++  . .+|+++..+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~-----~--~~~~~Di~~~~~~~l~--~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANF-----P--EVICGDITEIDPSDLP--K-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHH-----T--EEEESHGGGCHHHHHH--H-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhcc-----c--cccccccccccccccc--c-cceEEEecc
Confidence            589999999999999988753  36899999999888877665     2  7888999875433332  2 588887776


Q ss_pred             CC
Q 026219          207 PD  208 (241)
Q Consensus       207 ~~  208 (241)
                      |-
T Consensus        70 PC   71 (335)
T PF00145_consen   70 PC   71 (335)
T ss_dssp             --
T ss_pred             CC
Confidence            53

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=92.49  E-value=1.1  Score=40.63  Aligned_cols=96  Identities=13%  Similarity=0.098  Sum_probs=55.9

Q ss_pred             CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +.+||=+|+| .|..+..+++...- .+|+++|.+++..+.+++    .|..  .++..+-.+..+.+....++.+|.|+
T Consensus       192 g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~~----~Ga~--~~i~~~~~~~~~~i~~~~~~g~d~vi  264 (371)
T cd08281         192 GQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALARE----LGAT--ATVNAGDPNAVEQVRELTGGGVDYAF  264 (371)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH----cCCc--eEeCCCchhHHHHHHHHhCCCCCEEE
Confidence            5566668876 46667777776532 269999999998887754    3442  22221111111111111123467655


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      -....+              ..++...+.|++||++++
T Consensus       265 d~~G~~--------------~~~~~~~~~l~~~G~iv~  288 (371)
T cd08281         265 EMAGSV--------------PALETAYEITRRGGTTVT  288 (371)
T ss_pred             ECCCCh--------------HHHHHHHHHHhcCCEEEE
Confidence            332222              677778899999998763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=92.47  E-value=0.94  Score=40.74  Aligned_cols=97  Identities=13%  Similarity=0.044  Sum_probs=57.2

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC-CcEeE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~-~~~d~  201 (241)
                      .+.+||=.|+| .|..+..+++...- ..|+++|.+++..+.+++    .|.+  .++...-.+....+....+ ..+|.
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~i~~~~~~~g~d~  248 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWARE----FGAT--HTVNSSGTDPVEAIRALTGGFGADV  248 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCc--eEEcCCCcCHHHHHHHHhCCCCCCE
Confidence            46778888886 46777778887643 359999999998888743    3432  2221111111111111112 34676


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+-....+              ..++...+.|++||++++
T Consensus       249 vid~~g~~--------------~~~~~~~~~~~~~G~iv~  274 (358)
T TIGR03451       249 VIDAVGRP--------------ETYKQAFYARDLAGTVVL  274 (358)
T ss_pred             EEECCCCH--------------HHHHHHHHHhccCCEEEE
Confidence            55332222              567778889999998863

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=92.03  E-value=0.82  Score=40.39  Aligned_cols=87  Identities=15%  Similarity=0.063  Sum_probs=63.3

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      ....++..+..|+=+| ----+++.++-.+-. -+|.-+||++..++..++.+++.|++|++.+.-|+.+.++.-+   .
T Consensus       145 m~~RGDL~gK~I~vvG-DDDLtsia~aLt~mp-k~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~---~  219 (354)
T COG1568         145 MYSRGDLEGKEIFVVG-DDDLTSIALALTGMP-KRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL---K  219 (354)
T ss_pred             eccccCcCCCeEEEEc-CchhhHHHHHhcCCC-ceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH---H
Confidence            3334555677899999 545555555554423 3899999999999999999999999999999999988655432   4


Q ss_pred             CcEeEEEEeCCC
Q 026219          197 GPLMLVSILCPD  208 (241)
Q Consensus       197 ~~~d~V~~~~~~  208 (241)
                      ..||.++...|.
T Consensus       220 ~kFDvfiTDPpe  231 (354)
T COG1568         220 RKFDVFITDPPE  231 (354)
T ss_pred             hhCCeeecCchh
Confidence            678866544433

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=91.94  E-value=0.45  Score=45.40  Aligned_cols=100  Identities=10%  Similarity=0.088  Sum_probs=68.2

Q ss_pred             CCcEEEEcCCccHHHHHH---HHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEe
Q 026219          125 LPLMVDIGSGSGRFLIWL---ARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~l---a~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ..+|+=+|.|-|-+....   ++......++++||.+|+++-..+.+- .... .+++++.+|..++     ..+..+.|
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n-~~~W~~~Vtii~~DMR~w-----~ap~eq~D  441 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRN-FECWDNRVTIISSDMRKW-----NAPREQAD  441 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhc-hhhhcCeeEEEecccccc-----CCchhhcc
Confidence            356889999999765543   333222378999999999988776632 2233 4699999999873     21236667


Q ss_pred             EEE----EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          201 LVS----ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~----~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +++    -.|.|-          .+..+-|.-+-+.|||+|+.+
T Consensus       442 I~VSELLGSFGDN----------ELSPECLDG~q~fLkpdgIsI  475 (649)
T KOG0822|consen  442 IIVSELLGSFGDN----------ELSPECLDGAQKFLKPDGISI  475 (649)
T ss_pred             chHHHhhccccCc----------cCCHHHHHHHHhhcCCCceEc
Confidence            653    244442          134599999999999998753

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=91.61  E-value=2  Score=37.49  Aligned_cols=105  Identities=11%  Similarity=0.135  Sum_probs=65.5

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCC---CcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEe
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPD---SGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~---~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ...++|+|+|+-.-+..|...+.+   ....+.||+|...++...+.+...-. -.+.-+.+|....+..+    ++.-.
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~----~~~~~  154 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAEL----PRGGR  154 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcc----cCCCe
Confidence            478999999999888877665422   25799999999988765554443221 13566778876543222    22222


Q ss_pred             EEEEeC----CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILC----PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~----~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+++..    .+-.+.+.        ..++..+...|+||-.+.+
T Consensus       155 Rl~~flGStlGN~tp~e~--------~~Fl~~l~~a~~pGd~~Ll  191 (321)
T COG4301         155 RLFVFLGSTLGNLTPGEC--------AVFLTQLRGALRPGDYFLL  191 (321)
T ss_pred             EEEEEecccccCCChHHH--------HHHHHHHHhcCCCcceEEE
Confidence            222211    11112222        4899999999999988764

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=91.57  E-value=1.1  Score=38.86  Aligned_cols=99  Identities=17%  Similarity=0.280  Sum_probs=52.1

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC--CCE--EEEEcccc----chHHhhccCCC
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL--SNI--HFLFANAS----VSFKQLVSSYP  196 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l--~ni--~~~~~D~~----~~~~~~~~~~~  196 (241)
                      ...|||+|.|+|-.++..+... . .+|+-.|+.. .++..+.+...++.  .+.  .+.+....    .......   +
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~-~-~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~---~  160 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLL-G-AEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL---P  160 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHh-c-ceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc---C
Confidence            4579999999996666666643 3 4677777644 44444444333221  111  22222211    0111112   1


Q ss_pred             CcEeEEEEe---CCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          197 GPLMLVSIL---CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       197 ~~~d~V~~~---~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ..+|.++..   |.+..+           +.++..+..+|..+|.++
T Consensus       161 ~~~DlilasDvvy~~~~~-----------e~Lv~tla~ll~~~~~i~  196 (248)
T KOG2793|consen  161 NPFDLILASDVVYEEESF-----------EGLVKTLAFLLAKDGTIF  196 (248)
T ss_pred             CcccEEEEeeeeecCCcc-----------hhHHHHHHHHHhcCCeEE
Confidence            116766432   222222           488888888888888655

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=90.85  E-value=1.3  Score=39.05  Aligned_cols=85  Identities=19%  Similarity=0.247  Sum_probs=52.8

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.++|=+||| .|.++..+++...- ..|+++|.+++.++.+...    .     ++  |..+   .    ....+|.|
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~---~----~~~g~Dvv  204 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATGY----E-----VL--DPEK---D----PRRDYRAI  204 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhhc----c-----cc--Chhh---c----cCCCCCEE
Confidence            35678888987 67788888887654 3577889988776665321    1     11  1111   0    02235655


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +=....+              ..++.+.+.|++||++++
T Consensus       205 id~~G~~--------------~~~~~~~~~l~~~G~iv~  229 (308)
T TIGR01202       205 YDASGDP--------------SLIDTLVRRLAKGGEIVL  229 (308)
T ss_pred             EECCCCH--------------HHHHHHHHhhhcCcEEEE
Confidence            4333222              667888999999999863

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=90.70  E-value=0.51  Score=43.52  Aligned_cols=61  Identities=11%  Similarity=0.150  Sum_probs=46.2

Q ss_pred             hCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          172 LALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       172 ~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+++++++.++++.+.+...   +++++|.+++.-...|+...      ...+.++++.+.++|||+|++
T Consensus       272 ~~~drv~i~t~si~~~L~~~---~~~s~~~~vL~D~~Dwm~~~------~~~~~~~~l~~~~~pgaRV~~  332 (380)
T PF11899_consen  272 ARLDRVRIHTDSIEEVLRRL---PPGSFDRFVLSDHMDWMDPE------QLNEEWQELARTARPGARVLW  332 (380)
T ss_pred             cCCCeEEEEeccHHHHHHhC---CCCCeeEEEecchhhhCCHH------HHHHHHHHHHHHhCCCCEEEE
Confidence            35578999999998865442   47999988776555566543      236899999999999999974

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=90.67  E-value=2.8  Score=36.29  Aligned_cols=95  Identities=11%  Similarity=-0.004  Sum_probs=55.5

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE-ccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF-ANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~-~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+||=+|+| .|..+..+++...- ..|+++|.+++..+.+++    .|...  ++. .+..+.+....  ....+|.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~~--~~~g~d~  190 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALS----FGATA--LAEPEVLAERQGGLQ--NGRGVDV  190 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCcE--ecCchhhHHHHHHHh--CCCCCCE
Confidence            46778888876 55666677776543 359999999988777654    34321  111 11111111111  1234676


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++-....+              ..++...+.|+|+|++++
T Consensus       191 vid~~G~~--------------~~~~~~~~~l~~~G~iv~  216 (280)
T TIGR03366       191 ALEFSGAT--------------AAVRACLESLDVGGTAVL  216 (280)
T ss_pred             EEECCCCh--------------HHHHHHHHHhcCCCEEEE
Confidence            54332222              677788999999999863

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PLN02740 Alcohol dehydrogenase-like

Probab=90.40  E-value=2.5  Score=38.45  Aligned_cols=93  Identities=12%  Similarity=0.157  Sum_probs=56.0

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcc-----ccchHHhhccCCCC
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN-----ASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D-----~~~~~~~~~~~~~~  197 (241)
                      .+.+||=+|+| .|..+..+++.... .+|+++|.+++.++.+++    .|.+.  ++..+     ..+.+....   .+
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~~---~~  267 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREMT---GG  267 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHHh---CC
Confidence            46788888886 56666777777543 369999999998888754    35422  22211     111121211   22


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEE
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVY  240 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~  240 (241)
                      .+|.|+-....+              ..++.....+++| |+++
T Consensus       268 g~dvvid~~G~~--------------~~~~~a~~~~~~g~G~~v  297 (381)
T PLN02740        268 GVDYSFECAGNV--------------EVLREAFLSTHDGWGLTV  297 (381)
T ss_pred             CCCEEEECCCCh--------------HHHHHHHHhhhcCCCEEE
Confidence            577654333322              6677778888886 8765

>cd08230 glucose_DH Glucose dehydrogenase

Probab=90.28  E-value=2.8  Score=37.59  Aligned_cols=92  Identities=20%  Similarity=0.168  Sum_probs=54.8

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeC---CHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEI---RQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDi---s~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      .+.+||=+|+| .|.++..+++.. + .+|++++.   +++..+.++    +.|...+.....|..+    ...  ...+
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~-G-~~vi~~~~~~~~~~~~~~~~----~~Ga~~v~~~~~~~~~----~~~--~~~~  239 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLR-G-FEVYVLNRRDPPDPKADIVE----ELGATYVNSSKTPVAE----VKL--VGEF  239 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-C-CeEEEEecCCCCHHHHHHHH----HcCCEEecCCccchhh----hhh--cCCC
Confidence            46788888987 477778888875 3 57999987   566666654    3343211111111111    001  2346


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|+-....+              ..+....+.|++||++++
T Consensus       240 d~vid~~g~~--------------~~~~~~~~~l~~~G~~v~  267 (355)
T cd08230         240 DLIIEATGVP--------------PLAFEALPALAPNGVVIL  267 (355)
T ss_pred             CEEEECcCCH--------------HHHHHHHHHccCCcEEEE
Confidence            7555333222              577888999999998863

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02827 Alcohol dehydrogenase-like

Probab=90.22  E-value=2.5  Score=38.46  Aligned_cols=93  Identities=15%  Similarity=0.182  Sum_probs=55.3

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-----cccchHHhhccCCCC
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-----NASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-----D~~~~~~~~~~~~~~  197 (241)
                      ++.+||=.|+| .|..+..+++...- ..|+++|.+++..+.+++    .|.+.  ++..     +..+.+....   .+
T Consensus       193 ~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~~----lGa~~--~i~~~~~~~~~~~~v~~~~---~~  262 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAKT----FGVTD--FINPNDLSEPIQQVIKRMT---GG  262 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH----cCCcE--EEcccccchHHHHHHHHHh---CC
Confidence            46788888876 55666677776543 369999999988777643    35422  2211     1111121211   22


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEE
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVY  240 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~  240 (241)
                      .+|.|+-.-..+              ..+....+.|++| |+++
T Consensus       263 g~d~vid~~G~~--------------~~~~~~l~~l~~g~G~iv  292 (378)
T PLN02827        263 GADYSFECVGDT--------------GIATTALQSCSDGWGLTV  292 (378)
T ss_pred             CCCEEEECCCCh--------------HHHHHHHHhhccCCCEEE
Confidence            467654332222              5677788899998 9886

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=89.72  E-value=0.6  Score=42.92  Aligned_cols=41  Identities=29%  Similarity=0.408  Sum_probs=35.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF  167 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~  167 (241)
                      -..++|+|.|.|.++..++-.+.  ..|+|||-|....++|++
T Consensus       154 i~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  154 IDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHH
Confidence            46799999999999999988775  489999999888877765

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=89.60  E-value=2.4  Score=37.48  Aligned_cols=96  Identities=13%  Similarity=0.093  Sum_probs=55.7

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEeE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d~  201 (241)
                      ++.+||-.|+| .|..+..+++.... ..+++++.++...+.+++    .+..  .++...-.+..+.+... ....+|.
T Consensus       167 ~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~i~~~~~~~~~d~  239 (347)
T cd05278         167 PGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKE----AGAT--DIINPKNGDIVEQILELTGGRGVDC  239 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHH----hCCc--EEEcCCcchHHHHHHHHcCCCCCcE
Confidence            35677777876 47788888887653 378999988877766543    2321  22222111111111111 2245776


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++ .....             ...+++..+.|+++|+++
T Consensus       240 vl-d~~g~-------------~~~~~~~~~~l~~~G~~v  264 (347)
T cd05278         240 VI-EAVGF-------------EETFEQAVKVVRPGGTIA  264 (347)
T ss_pred             EE-EccCC-------------HHHHHHHHHHhhcCCEEE
Confidence            54 32211             157788889999999876

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=88.98  E-value=3.2  Score=36.74  Aligned_cols=95  Identities=13%  Similarity=0.139  Sum_probs=55.0

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccc--cchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA--SVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~--~~~~~~~~~~~~~~~d  200 (241)
                      .+.+||=+|+| .|..+..+++...- ..|+++|.+++..+.+++    .|...  ++...-  .+.+....  ....+|
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~-~~vi~~~~~~~~~~~~~~----~ga~~--~i~~~~~~~~~~~~~~--~~~~~d  233 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGA-EDVIGVDPSPERLELAKA----LGADF--VINSGQDDVQEIRELT--SGAGAD  233 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCCE--EEcCCcchHHHHHHHh--CCCCCC
Confidence            36677777876 45666677776543 239999999988777643    35421  221111  11111111  123577


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+-....+              ..++...+.|+++|++++
T Consensus       234 ~vid~~g~~--------------~~~~~~~~~l~~~G~~v~  260 (339)
T cd08239         234 VAIECSGNT--------------AARRLALEAVRPWGRLVL  260 (339)
T ss_pred             EEEECCCCH--------------HHHHHHHHHhhcCCEEEE
Confidence            665333222              566777889999998863

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=88.94  E-value=4.8  Score=35.29  Aligned_cols=95  Identities=18%  Similarity=0.116  Sum_probs=56.6

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+||-+|+| .|..+..+++...- ..++.++.+++..+.+++    .+..  .++..+-.+...... .....+|.+
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~-~~~~~vd~v  230 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGA-SRVTVAEPNEEKLELAKK----LGAT--ETVDPSREDPEAQKE-DNPYGFDVV  230 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----hCCe--EEecCCCCCHHHHHH-hcCCCCcEE
Confidence            45788888876 47777778887543 238999999988777643    3432  233222111111101 123457766


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +-....              ...++...+.|+++|+++
T Consensus       231 ~~~~~~--------------~~~~~~~~~~l~~~G~~v  254 (334)
T cd08234         231 IEATGV--------------PKTLEQAIEYARRGGTVL  254 (334)
T ss_pred             EECCCC--------------hHHHHHHHHHHhcCCEEE
Confidence            533221              267778889999999875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=88.86  E-value=3.5  Score=36.68  Aligned_cols=94  Identities=17%  Similarity=0.143  Sum_probs=56.4

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc---cccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA---NASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~---D~~~~~~~~~~~~~~~~  199 (241)
                      ++.+||=.|+| .|..+..+++.... ..++++|.+++..+.+++    .|..  .++..   +..+.+....  ....+
T Consensus       166 ~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~~--~~v~~~~~~~~~~i~~~~--~~~~~  236 (351)
T cd08285         166 LGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAKE----YGAT--DIVDYKNGDVVEQILKLT--GGKGV  236 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCc--eEecCCCCCHHHHHHHHh--CCCCC
Confidence            45677777876 56777778877644 469999999987777653    3442  22221   2111111111  12347


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |.++-....              ...+..+.+.|+++|+++
T Consensus       237 d~vld~~g~--------------~~~~~~~~~~l~~~G~~v  263 (351)
T cd08285         237 DAVIIAGGG--------------QDTFEQALKVLKPGGTIS  263 (351)
T ss_pred             cEEEECCCC--------------HHHHHHHHHHhhcCCEEE
Confidence            765433221              267788899999999875

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=88.81  E-value=3.4  Score=36.96  Aligned_cols=42  Identities=17%  Similarity=0.310  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF  167 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~  167 (241)
                      ++.+||=+|+|. |..+..+++...  .+++++|.+++.++.+++
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence            467899999974 777788888763  479999999998887744

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=88.77  E-value=0.97  Score=35.37  Aligned_cols=42  Identities=14%  Similarity=0.245  Sum_probs=27.9

Q ss_pred             EEcCCcc--HHHHHHH--HHCCCCcEEEEEeCCHHHHHHHHHH--HHHh
Q 026219          130 DIGSGSG--RFLIWLA--RRNPDSGNYLGLEIRQKLVKRAEFW--VQEL  172 (241)
Q Consensus       130 DIGCGtG--~~~~~la--~~~p~~~~v~giDis~~~v~~a~~~--~~~~  172 (241)
                      |||+..|  .....+.  ...+. ..|+++|.+|..++..+++  +.-+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~-~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPG-GRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS---SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCC-CEEEEEECCHHHHHHHhHHHHHHhc
Confidence            8999999  6666554  34566 7999999999999999888  5444

; PDB: 2PY6_A.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=88.73  E-value=5.3  Score=35.54  Aligned_cols=96  Identities=13%  Similarity=0.076  Sum_probs=55.8

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcccc--chHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS--VSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~--~~~~~~~~~~~~~~d  200 (241)
                      .+.+||=.|+| .|..+..+++...- ..|+++|.+++..+.+++    .|..  .++..+-.  +.+....  ....+|
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~~~--~~~~~d  230 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDINSEKLALAKS----LGAM--QTFNSREMSAPQIQSVL--RELRFD  230 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH----cCCc--eEecCcccCHHHHHHHh--cCCCCC
Confidence            35677777876 56666777776643 348999999988777643    3432  22211111  1111111  123466


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+++.....             ...++...+.|++||++++
T Consensus       231 ~~v~d~~G~-------------~~~~~~~~~~l~~~G~iv~  258 (347)
T PRK10309        231 QLILETAGV-------------PQTVELAIEIAGPRAQLAL  258 (347)
T ss_pred             eEEEECCCC-------------HHHHHHHHHHhhcCCEEEE
Confidence            344443321             2677888999999999864

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=88.69  E-value=5.1  Score=35.65  Aligned_cols=87  Identities=18%  Similarity=0.095  Sum_probs=53.8

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+||=.|+| .|..+..+++.. + .++++++.+++..+.+++    .|.+.  ++  |..+     .  ....+|.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~-G-~~vi~~~~~~~~~~~a~~----~Ga~~--vi--~~~~-----~--~~~~~d~~  227 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQ-G-ATVHVMTRGAAARRLALA----LGAAS--AG--GAYD-----T--PPEPLDAA  227 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHC-C-CeEEEEeCChHHHHHHHH----hCCce--ec--cccc-----c--CcccceEE
Confidence            46788888876 555666777765 4 579999999988777654    45432  11  1111     0  01235644


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..-..+              ..++...+.|++||++++
T Consensus       228 i~~~~~~--------------~~~~~~~~~l~~~G~~v~  252 (329)
T TIGR02822       228 ILFAPAG--------------GLVPPALEALDRGGVLAV  252 (329)
T ss_pred             EECCCcH--------------HHHHHHHHhhCCCcEEEE
Confidence            3322211              567788899999999863

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=88.57  E-value=3.7  Score=36.21  Aligned_cols=95  Identities=14%  Similarity=0.184  Sum_probs=57.3

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+||-.|+|. |..+..+++.. + .+++++..+++..+.+++    .+...+ .....+..+.+....  .+..+|.
T Consensus       159 ~g~~vLI~g~g~vG~~a~~lA~~~-g-~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~--~~~~vd~  230 (337)
T cd08261         159 AGDTVLVVGAGPIGLGVIQVAKAR-G-ARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT--DGEGADV  230 (337)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-C-CeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh--CCCCCCE
Confidence            467888888874 77888888875 4 589999889888776643    232221 111112111122221  1234776


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++-....              ...+..+.+.|+++|+++
T Consensus       231 vld~~g~--------------~~~~~~~~~~l~~~G~~i  255 (337)
T cd08261         231 VIDATGN--------------PASMEEAVELVAHGGRVV  255 (337)
T ss_pred             EEECCCC--------------HHHHHHHHHHHhcCCEEE
Confidence            6543322              266788899999999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=88.46  E-value=4.5  Score=36.57  Aligned_cols=95  Identities=13%  Similarity=0.092  Sum_probs=55.0

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEE--ccccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLF--ANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~--~D~~~~~~~~~~~~~~~~  199 (241)
                      .+.+||=+|+| .|..+..+++.... .+|+++|.+++..+.+++    .|... +....  .+..+.+....   ++.+
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~---~~g~  256 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT---DGGV  256 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh---CCCC
Confidence            46778888886 46677778887543 379999999998887754    35422 11110  11111111111   2246


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEE
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVY  240 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~  240 (241)
                      |.++-....+              ..+....+.|++| |+++
T Consensus       257 d~vid~~G~~--------------~~~~~~~~~~~~~~G~~v  284 (368)
T TIGR02818       257 DYSFECIGNV--------------NVMRAALECCHKGWGESI  284 (368)
T ss_pred             CEEEECCCCH--------------HHHHHHHHHhhcCCCeEE
Confidence            7554332222              5677778888886 8875

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=88.08  E-value=5.6  Score=36.21  Aligned_cols=95  Identities=15%  Similarity=0.163  Sum_probs=61.1

Q ss_pred             CCCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc----cccchHHhhccCCCC
Q 026219          123 PTLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA----NASVSFKQLVSSYPG  197 (241)
Q Consensus       123 ~~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~----D~~~~~~~~~~~~~~  197 (241)
                      ..+.+|.=+||| .|..++.-|+.... .++++||++++-++.|++    .|..  +++..    |+.+.+..+   -++
T Consensus       184 ~~G~tvaV~GlGgVGlaaI~gA~~agA-~~IiAvD~~~~Kl~~A~~----fGAT--~~vn~~~~~~vv~~i~~~---T~g  253 (366)
T COG1062         184 EPGDTVAVFGLGGVGLAAIQGAKAAGA-GRIIAVDINPEKLELAKK----FGAT--HFVNPKEVDDVVEAIVEL---TDG  253 (366)
T ss_pred             CCCCeEEEEeccHhHHHHHHHHHHcCC-ceEEEEeCCHHHHHHHHh----cCCc--eeecchhhhhHHHHHHHh---cCC
Confidence            357889999998 67777777777666 799999999999998865    3432  33332    343333222   244


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      -.|.++-.-...              ..++.....++++|+.++
T Consensus       254 G~d~~~e~~G~~--------------~~~~~al~~~~~~G~~v~  283 (366)
T COG1062         254 GADYAFECVGNV--------------EVMRQALEATHRGGTSVI  283 (366)
T ss_pred             CCCEEEEccCCH--------------HHHHHHHHHHhcCCeEEE
Confidence            556553332222              566667777777887654

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=87.77  E-value=5.8  Score=34.97  Aligned_cols=94  Identities=15%  Similarity=0.191  Sum_probs=56.3

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+||-.|+|. |..+..+++...- ..+++++.++...+.+++    .+.+  .++..+-.. +..... ....+|.+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~~----~g~~--~vi~~~~~~-~~~~~~-~~~~vd~v  235 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVARA----MGAD--ETVNLARDP-LAAYAA-DKGDFDVV  235 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----cCCC--EEEcCCchh-hhhhhc-cCCCccEE
Confidence            467788888875 7788888887532 279999999988776543    2432  222211111 111111 12347766


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +-....              ...++.+.+.|+++|+++
T Consensus       236 ld~~g~--------------~~~~~~~~~~L~~~G~~v  259 (339)
T cd08232         236 FEASGA--------------PAALASALRVVRPGGTVV  259 (339)
T ss_pred             EECCCC--------------HHHHHHHHHHHhcCCEEE
Confidence            543221              156778899999999886

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PTZ00357 methyltransferase; Provisional

Probab=87.35  E-value=3.9  Score=40.70  Aligned_cols=103  Identities=11%  Similarity=0.033  Sum_probs=63.5

Q ss_pred             CcEEEEcCCccHHHHHHHH---HCCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCC--------EEEEEccccchHHhh--
Q 026219          126 PLMVDIGSGSGRFLIWLAR---RNPDSGNYLGLEIRQKLVKRAEFWVQE-LALSN--------IHFLFANASVSFKQL--  191 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~---~~p~~~~v~giDis~~~v~~a~~~~~~-~~l~n--------i~~~~~D~~~~~~~~--  191 (241)
                      .+|+=+|+|-|-+.-...+   ...-..+|++||.++..+.....+.++ ..+.+        ++++..|..++-...  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            3689999999977655433   222226899999997755555444322 23333        899999998742110  


Q ss_pred             --c--cCCCCcEeEEEE----eCCCCchhhhhhhcccchHHHHHHHHhcccc----CCE
Q 026219          192 --V--SSYPGPLMLVSI----LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMP----GGK  238 (241)
Q Consensus       192 --~--~~~~~~~d~V~~----~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lkp----GG~  238 (241)
                        .  +..-+.+|+|+.    .|.|-          .+..+.|.-+.+.||+    +|+
T Consensus       782 ~s~~~P~~~gKaDIVVSELLGSFGDN----------ELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSELLGSLGDN----------ELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehHhhhcccccc----------cCCHHHHHHHHHhhhhhcccccc
Confidence              0  001136787754    34442          2345888888888887    775

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=87.19  E-value=1.3  Score=38.74  Aligned_cols=60  Identities=13%  Similarity=0.238  Sum_probs=42.1

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC-----CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccc
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN-----PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASV  186 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~-----p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~  186 (241)
                      ...++|+|||.|.++..+++..     +. ..++.||...... .+..+++.... ..++-+..|+.+
T Consensus        19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~-~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d   84 (259)
T PF05206_consen   19 DSCFVEFGAGRGELSRWVAQALQEDKPSN-SRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD   84 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHhhhcccCC-ccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence            5689999999999999999887     34 6899999976443 33333443321 246666777765

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=87.03  E-value=1.9  Score=39.86  Aligned_cols=71  Identities=21%  Similarity=0.267  Sum_probs=49.5

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH-------hCC--CCEEEEEcccc
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-------LAL--SNIHFLFANAS  185 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~-------~~l--~ni~~~~~D~~  185 (241)
                      ...+...-.++....|+|.|.|......+..... ..-+|+|+....-+.|..+.+.       .|-  ..++.+++++.
T Consensus       183 si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~-k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~  261 (419)
T KOG3924|consen  183 SIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGC-KKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL  261 (419)
T ss_pred             HHHHHhccCCCCcccCCCcccchhhHHHHHhhcc-ccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence            3344444445789999999999999888876544 5688999988776666554332       232  23788888887


Q ss_pred             c
Q 026219          186 V  186 (241)
Q Consensus       186 ~  186 (241)
                      .
T Consensus       262 ~  262 (419)
T KOG3924|consen  262 D  262 (419)
T ss_pred             C
Confidence            5

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=87.01  E-value=1.1  Score=34.71  Aligned_cols=56  Identities=18%  Similarity=0.243  Sum_probs=36.2

Q ss_pred             CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          176 NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       176 ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++++..+|+.+.++.+    +..+|.+++.-..|. +    ...+-...+++.++++++|||++.
T Consensus        32 ~L~L~~gDa~~~l~~l----~~~~Da~ylDgFsP~-~----nPelWs~e~~~~l~~~~~~~~~l~   87 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL----DARFDAWYLDGFSPA-K----NPELWSEELFKKLARLSKPGGTLA   87 (124)
T ss_dssp             EEEEEES-HHHHHHHB-----T-EEEEEE-SS-TT-T----SGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEEcHHHHHHHhC----cccCCEEEecCCCCc-C----CcccCCHHHHHHHHHHhCCCcEEE
Confidence            4677889998766554    478998887632220 1    112445699999999999999874

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=86.67  E-value=7.8  Score=33.92  Aligned_cols=91  Identities=13%  Similarity=0.120  Sum_probs=55.8

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+..||-+|+| .|..+..+++...  .++++++.+++..+.+++    .+..  .++..+-......    ....+|.+
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~----~~~~~d~v  229 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARK----LGAD--EVVDSGAELDEQA----AAGGADVI  229 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----hCCc--EEeccCCcchHHh----ccCCCCEE
Confidence            45678888987 7888778888753  479999999988777633    2322  1121111111111    12347766


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +-.....              ..++.+.+.|+++|+++
T Consensus       230 i~~~~~~--------------~~~~~~~~~l~~~G~~i  253 (330)
T cd08245         230 LVTVVSG--------------AAAEAALGGLRRGGRIV  253 (330)
T ss_pred             EECCCcH--------------HHHHHHHHhcccCCEEE
Confidence            5432322              56777889999999876

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=86.47  E-value=6.9  Score=35.24  Aligned_cols=95  Identities=14%  Similarity=0.142  Sum_probs=53.9

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEc--cccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFA--NASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~--D~~~~~~~~~~~~~~~~  199 (241)
                      .+.+||=+|+| .|..+..+++...- .+|+++|.+++..+.+++    .|...+ .....  +..+.+....   ...+
T Consensus       184 ~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~---~~g~  255 (365)
T cd08277         184 PGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT---GGGV  255 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh---CCCC
Confidence            46777777875 55666677777543 379999999988877743    344321 11110  1111111111   2346


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEE
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVY  240 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~  240 (241)
                      |.|+-.-..+              ..++...+.|+++ |+++
T Consensus       256 d~vid~~g~~--------------~~~~~~~~~l~~~~G~~v  283 (365)
T cd08277         256 DYSFECTGNA--------------DLMNEALESTKLGWGVSV  283 (365)
T ss_pred             CEEEECCCCh--------------HHHHHHHHhcccCCCEEE
Confidence            7655322212              6677788889885 8875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=86.32  E-value=5.8  Score=33.79  Aligned_cols=90  Identities=14%  Similarity=0.096  Sum_probs=53.2

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+||=.|+|. |..+..+++.... ..+++++.+++..+.+++    .|..+ .++..  .+   ...  ....+|.+
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~----~g~~~-~~~~~--~~---~~~--~~~~~d~v  163 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEA----LGPAD-PVAAD--TA---DEI--GGRGADVV  163 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHH----cCCCc-ccccc--ch---hhh--cCCCCCEE
Confidence            456777778875 7777888887643 239999999988776654    23111 01100  00   001  12346765


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +-....              ...++...+.|+++|+++
T Consensus       164 l~~~~~--------------~~~~~~~~~~l~~~g~~~  187 (277)
T cd08255         164 IEASGS--------------PSALETALRLLRDRGRVV  187 (277)
T ss_pred             EEccCC--------------hHHHHHHHHHhcCCcEEE
Confidence            432221              156777888899999875

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08293 PTGR2 Prostaglandin reductase

Probab=86.06  E-value=11  Score=33.27  Aligned_cols=94  Identities=12%  Similarity=0.054  Sum_probs=55.9

Q ss_pred             CcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          126 PLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       126 ~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .+||=.|.  |.|..+..+++...- .+|++++.+++..+.+++.   .|.+.  ++..+-.+..+.+....+..+|.|+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~-~~Vi~~~~s~~~~~~~~~~---lGa~~--vi~~~~~~~~~~i~~~~~~gvd~vi  229 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGC-SRVVGICGSDEKCQLLKSE---LGFDA--AINYKTDNVAERLRELCPEGVDVYF  229 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHh---cCCcE--EEECCCCCHHHHHHHHCCCCceEEE
Confidence            67877775  588888889887632 2799999999877776542   35432  2222111111111111124578665


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      -....               ..++...+.|+++|+++
T Consensus       230 d~~g~---------------~~~~~~~~~l~~~G~iv  251 (345)
T cd08293         230 DNVGG---------------EISDTVISQMNENSHII  251 (345)
T ss_pred             ECCCc---------------HHHHHHHHHhccCCEEE
Confidence            32221               33577888999999886

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=85.92  E-value=1.1  Score=40.24  Aligned_cols=56  Identities=25%  Similarity=0.274  Sum_probs=41.8

Q ss_pred             EEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccc
Q 026219          128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANA  184 (241)
Q Consensus       128 VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~  184 (241)
                      =+|||.|+-.+--.+..+.-+ ...+++|++...+..|.+++.+++++ .+.+++...
T Consensus       106 GiDIgtgasci~~llg~rq~n-~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~  162 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNN-WYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEP  162 (419)
T ss_pred             eeeccCchhhhHHhhhchhcc-ceeeeeeccccccchhhccccccccccceeeEEecc
Confidence            378888876555444443334 78999999999999999999998874 566666544

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=85.86  E-value=4.8  Score=39.35  Aligned_cols=72  Identities=18%  Similarity=0.160  Sum_probs=43.5

Q ss_pred             cEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          127 LMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      .|+=  ||.|.++..+++..  .+ ..++.+|.+++.++.+++    .   ...++.+|+.+. +.+..-.-...+.+++
T Consensus       402 ~vII--~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~-~~L~~agi~~A~~vv~  470 (601)
T PRK03659        402 QVII--VGFGRFGQVIGRLLMANK-MRITVLERDISAVNLMRK----Y---GYKVYYGDATQL-ELLRAAGAEKAEAIVI  470 (601)
T ss_pred             CEEE--ecCchHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHh----C---CCeEEEeeCCCH-HHHHhcCCccCCEEEE
Confidence            4544  55566666555532  23 479999999999888754    2   457899999862 1111101234566776


Q ss_pred             eCCCC
Q 026219          205 LCPDP  209 (241)
Q Consensus       205 ~~~~~  209 (241)
                      ...++
T Consensus       471 ~~~d~  475 (601)
T PRK03659        471 TCNEP  475 (601)
T ss_pred             EeCCH
Confidence            66654

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=85.78  E-value=7.6  Score=34.92  Aligned_cols=93  Identities=13%  Similarity=0.135  Sum_probs=54.0

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcc-----ccchHHhhccCCCC
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN-----ASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D-----~~~~~~~~~~~~~~  197 (241)
                      .+.+||=.|+| .|..+..+++.... .+|+++|.+++..+.+++    .|..  .++..+     ..+.+....   ++
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~v~~~~---~~  256 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKK----FGVT--EFVNPKDHDKPVQEVIAEMT---GG  256 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCc--eEEcccccchhHHHHHHHHh---CC
Confidence            46777778876 55666777777543 379999999988887643    3542  222111     111111111   23


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEE
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVY  240 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~  240 (241)
                      .+|.++-....+              ..+....+.+++| |+++
T Consensus       257 ~~d~vid~~G~~--------------~~~~~~~~~~~~~~g~~v  286 (369)
T cd08301         257 GVDYSFECTGNI--------------DAMISAFECVHDGWGVTV  286 (369)
T ss_pred             CCCEEEECCCCh--------------HHHHHHHHHhhcCCCEEE
Confidence            467554322222              5667778888996 8875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=85.53  E-value=9.1  Score=34.49  Aligned_cols=93  Identities=12%  Similarity=0.132  Sum_probs=54.5

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-----cccchHHhhccCCCC
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-----NASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-----D~~~~~~~~~~~~~~  197 (241)
                      .+.+||=+|+| .|..+..+++...- ..|+++|.+++..+.+++    .|...  ++..     |..+.+....   ++
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~~~~~~~~~~~----lGa~~--~i~~~~~~~~~~~~v~~~~---~~  255 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDINPDKFELAKK----FGATD--CVNPKDHDKPIQQVLVEMT---DG  255 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCCE--EEcccccchHHHHHHHHHh---CC
Confidence            46777777875 55666677776543 379999999998887643    35432  2211     1211111211   23


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEE
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVY  240 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~  240 (241)
                      .+|.|+-....+              ..++...+.|+++ |+++
T Consensus       256 g~d~vid~~g~~--------------~~~~~a~~~l~~~~G~~v  285 (368)
T cd08300         256 GVDYTFECIGNV--------------KVMRAALEACHKGWGTSV  285 (368)
T ss_pred             CCcEEEECCCCh--------------HHHHHHHHhhccCCCeEE
Confidence            567654322212              5677788889887 8775

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=85.43  E-value=2  Score=38.39  Aligned_cols=68  Identities=15%  Similarity=0.086  Sum_probs=46.4

Q ss_pred             EEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCC
Q 026219          128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCP  207 (241)
Q Consensus       128 VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~  207 (241)
                      |+|+-||.|.+..-+.+..-  -.+.++|+++.+++.-+.|.     ++ .++.+|+.+....-+    ..+|+++..+|
T Consensus         1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~-----~~-~~~~~Di~~~~~~~~----~~~dvl~gg~P   68 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANF-----GN-KVPFGDITKISPSDI----PDFDILLGGFP   68 (315)
T ss_pred             CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhC-----CC-CCCccChhhhhhhhC----CCcCEEEecCC
Confidence            68999999999999877632  24678999999888876653     23 456688876321111    24687766555

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=85.31  E-value=3.2  Score=37.33  Aligned_cols=75  Identities=9%  Similarity=-0.004  Sum_probs=51.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..+++|+-||.|.+..-+.+..-+  -+.++|+++.+++.-+.|.     +...++..|+.+.....+.  +..+|+++-
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~--~~~a~Eid~~a~~ty~~n~-----~~~~~~~~di~~~~~~~~~--~~~~Dvlig   73 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFE--IVFANEIDPPAVATYKANF-----PHGDIILGDIKELDGEALR--KSDVDVLIG   73 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCe--EEEEEecCHHHHHHHHHhC-----CCCceeechHhhcChhhcc--ccCCCEEEe
Confidence            467999999999999888776533  5889999999888765543     2256677777653222221  116787776


Q ss_pred             eCCC
Q 026219          205 LCPD  208 (241)
Q Consensus       205 ~~~~  208 (241)
                      .+|-
T Consensus        74 GpPC   77 (328)
T COG0270          74 GPPC   77 (328)
T ss_pred             CCCC
Confidence            6554

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=85.22  E-value=3.3  Score=38.39  Aligned_cols=105  Identities=20%  Similarity=0.114  Sum_probs=56.5

Q ss_pred             CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhc------cCCC-
Q 026219          126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLV------SSYP-  196 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~------~~~~-  196 (241)
                      .+|-=||=  |..++.+|-.+  .+ ..|+|+||++..++..++     |.  ..+..-+..+.+....      ..-+ 
T Consensus        10 ~~I~ViGL--GYVGLPlA~~fA~~G-~~ViG~DIn~~~Vd~ln~-----G~--~~i~e~~~~~~v~~~v~~g~lraTtd~   79 (436)
T COG0677          10 ATIGVIGL--GYVGLPLAAAFASAG-FKVIGVDINQKKVDKLNR-----GE--SYIEEPDLDEVVKEAVESGKLRATTDP   79 (436)
T ss_pred             eEEEEEcc--ccccHHHHHHHHHcC-CceEeEeCCHHHHHHHhC-----Cc--ceeecCcHHHHHHHHHhcCCceEecCh
Confidence            44555554  55555555443  23 579999999999887632     32  2333333221111000      0001 


Q ss_pred             ---CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 ---GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ---~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                         ..-|.+++.-|.|.-+ .+.-..-......+.+.+.|++|-.+++
T Consensus        80 ~~l~~~dv~iI~VPTPl~~-~~~pDls~v~~aa~sIa~~L~kG~LVIl  126 (436)
T COG0677          80 EELKECDVFIICVPTPLKK-YREPDLSYVESAARSIAPVLKKGDLVIL  126 (436)
T ss_pred             hhcccCCEEEEEecCCcCC-CCCCChHHHHHHHHHHHHhcCCCCEEEE
Confidence               1346667776666322 1111122446888899999999877764

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=85.20  E-value=11  Score=33.97  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=55.4

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+||=.|+| .|..+..+++...- ..++++|.++...+.+++    .+..  .++..+-.+..+.+.......+|.|
T Consensus       186 ~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~~~~~~d~v  258 (365)
T cd08278         186 PGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREITGGGVDYA  258 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHHhCCCCcEE
Confidence            35677777876 36777778887644 369999999987776643    3432  2222111111111111012346765


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +-....+              ..+..+.+.|+++|+++
T Consensus       259 ld~~g~~--------------~~~~~~~~~l~~~G~~v  282 (365)
T cd08278         259 LDTTGVP--------------AVIEQAVDALAPRGTLA  282 (365)
T ss_pred             EECCCCc--------------HHHHHHHHHhccCCEEE
Confidence            4332222              56778889999999876

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=84.51  E-value=7.4  Score=35.77  Aligned_cols=104  Identities=10%  Similarity=0.020  Sum_probs=55.9

Q ss_pred             CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc---cccchHHhhccCCCCcEe
Q 026219          125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA---NASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~---D~~~~~~~~~~~~~~~~d  200 (241)
                      +.+||=.|+| .|..+..+++...- ..++.+|.+++..+.+++    .|..  .+...   +..+.+.....  ...+|
T Consensus       186 g~~VlV~G~G~iG~~aiqlAk~~Ga-~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~~~--~~g~D  256 (393)
T TIGR02819       186 GSTVYIAGAGPVGLAAAASAQLLGA-AVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQILG--EPEVD  256 (393)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHHcC--CCCCc
Confidence            4455547776 56666777777644 357778999888887754    3542  22211   22121222211  23467


Q ss_pred             EEEEeCCCC---chhhhhhhcccchH-HHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDP---HFKKKHHKRRVVQK-PLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~---~~~~~~~~~r~~~~-~ll~~l~r~LkpGG~l~~  241 (241)
                      .++-.-..+   ++.+.    ..... ..++...+++++||++++
T Consensus       257 vvid~~G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~G~i~~  297 (393)
T TIGR02819       257 CAVDCVGFEARGHGHDG----KKEAPATVLNSLMEVTRVGGAIGI  297 (393)
T ss_pred             EEEECCCCccccccccc----cccchHHHHHHHHHHhhCCCEEEE
Confidence            654332222   11100    01111 478889999999999874

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK07806 short chain dehydrogenase; Provisional

Probab=84.31  E-value=13  Score=30.95  Aligned_cols=114  Identities=12%  Similarity=0.004  Sum_probs=57.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCEEEEEccccchH--HhhccC---CC
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQ-KLVKRAEFWVQELALSNIHFLFANASVSF--KQLVSS---YP  196 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~-~~v~~a~~~~~~~~l~ni~~~~~D~~~~~--~~~~~~---~~  196 (241)
                      +.++|=.|+ +|.++..+++.+  .+ .+|++++.+. ...+.....++..+ .++.++.+|+.+.-  ...+..   .-
T Consensus         6 ~k~vlItGa-sggiG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (248)
T PRK07806          6 GKTALVTGS-SRGIGADTAKILAGAG-AHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEF   82 (248)
T ss_pred             CcEEEEECC-CCcHHHHHHHHHHHCC-CEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            467888885 444555555443  24 5798888764 33343333343333 36788999987631  111110   01


Q ss_pred             CcEeEEEEeCCCCch-----hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSILCPDPHF-----KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~-----~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.+|.++.+......     .........-...+++.+.+.++.+|.+++
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~  132 (248)
T PRK07806         83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF  132 (248)
T ss_pred             CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence            357766654321100     000000011123567777777766676653

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=84.24  E-value=6  Score=37.74  Aligned_cols=112  Identities=15%  Similarity=0.105  Sum_probs=66.6

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCC---CCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNP---DSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p---~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      ...|.|..||+|.++....+...   ....++|-|..+.+...++.++.-.+..  ......+|-....+..   ....+
T Consensus       218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~---~~~~~  294 (501)
T TIGR00497       218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWE---NENGF  294 (501)
T ss_pred             CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCcccc---ccccC
Confidence            46899999999999987554321   1146999999999999999886554432  3344445543311111   12346


Q ss_pred             eEEEEeCCC--Cchhh-----hhhhcc----------cchHHHHHHHHhccccCCEE
Q 026219          200 MLVSILCPD--PHFKK-----KHHKRR----------VVQKPLVDSIIDYLMPGGKV  239 (241)
Q Consensus       200 d~V~~~~~~--~~~~~-----~~~~~r----------~~~~~ll~~l~r~LkpGG~l  239 (241)
                      |.|+.+.|.  .|...     ....+.          --...++..+...|++||+.
T Consensus       295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~  351 (501)
T TIGR00497       295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTA  351 (501)
T ss_pred             CEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeE
Confidence            666555432  11100     000111          02358888899999999964

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=84.21  E-value=6.8  Score=32.93  Aligned_cols=101  Identities=20%  Similarity=0.308  Sum_probs=61.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHH---CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch-----HHhhccCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARR---NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS-----FKQLVSSY  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~---~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~-----~~~~~~~~  195 (241)
                      +...|+|+|.-.|..++.+|..   .....+|+++||+-...+.+..     ..+.|.|++++-.+.     .....+.+
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~-----e~p~i~f~egss~dpai~eqi~~~~~~y  143 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR-----EVPDILFIEGSSTDPAIAEQIRRLKNEY  143 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh-----cCCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence            4578999999999998887753   2323689999998766554432     147899999987653     11211112


Q ss_pred             CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +   -..++.-++...+.        .-+-++.+.++|.-|-.++
T Consensus       144 ~---kIfvilDsdHs~~h--------vLAel~~~~pllsaG~Y~v  177 (237)
T COG3510         144 P---KIFVILDSDHSMEH--------VLAELKLLAPLLSAGDYLV  177 (237)
T ss_pred             C---cEEEEecCCchHHH--------HHHHHHHhhhHhhcCceEE
Confidence            2   22334444443211        1255666777777776554

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=84.06  E-value=7.3  Score=37.56  Aligned_cols=66  Identities=15%  Similarity=0.133  Sum_probs=41.6

Q ss_pred             CCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEeEEEEeCCC
Q 026219          133 SGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLMLVSILCPD  208 (241)
Q Consensus       133 CGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d~V~~~~~~  208 (241)
                      ||.|..+..+++..  .+ .+++.+|.+++.++.+++       .+...+.+|+.+.  ..... .-...|.+++..++
T Consensus       423 ~G~G~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~-------~g~~~i~GD~~~~--~~L~~a~i~~a~~viv~~~~  491 (558)
T PRK10669        423 VGYGRVGSLLGEKLLAAG-IPLVVIETSRTRVDELRE-------RGIRAVLGNAANE--EIMQLAHLDCARWLLLTIPN  491 (558)
T ss_pred             ECCChHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH-------CCCeEEEcCCCCH--HHHHhcCccccCEEEEEcCC
Confidence            55566666666643  23 479999999998887753       2578999999862  11111 11345666666554

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.03  E-value=6  Score=35.78  Aligned_cols=94  Identities=15%  Similarity=0.180  Sum_probs=56.5

Q ss_pred             CCCcEEEEcC-CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEE-EccccchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGS-GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFL-FANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGC-GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~-~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ++..|-=+|. |-|.++..+|+.+.-  +|++||-+..--+.+   ++..|-+. +.+. ..|.   ........|+.+|
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~--rV~vis~~~~kkeea---~~~LGAd~fv~~~~d~d~---~~~~~~~~dg~~~  252 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGM--RVTVISTSSKKKEEA---IKSLGADVFVDSTEDPDI---MKAIMKTTDGGID  252 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCc--EEEEEeCCchhHHHH---HHhcCcceeEEecCCHHH---HHHHHHhhcCcce
Confidence            3566666664 489999999999864  899999997544444   33345432 1111 1222   2233333456666


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|... ..               ..++.+.++||++|++++
T Consensus       253 ~v~~~-a~---------------~~~~~~~~~lk~~Gt~V~  277 (360)
T KOG0023|consen  253 TVSNL-AE---------------HALEPLLGLLKVNGTLVL  277 (360)
T ss_pred             eeeec-cc---------------cchHHHHHHhhcCCEEEE
Confidence            55422 21               345557889999999874

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=83.99  E-value=3.6  Score=36.77  Aligned_cols=86  Identities=16%  Similarity=0.179  Sum_probs=60.3

Q ss_pred             HHHHCCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhccc
Q 026219          142 LARRNPDSGN-YLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRV  220 (241)
Q Consensus       142 la~~~p~~~~-v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~  220 (241)
                      +++++|...+ ..-+...+...|.++++++     ++.+.++|+.+.+   -..+-+.+|.+++.-...|+.+.+     
T Consensus       278 FarRyp~p~Eg~lP~yl~~~~YEsir~n~~-----RV~ihha~~iE~l---~~k~ag~Vdr~iLlDaqdwmtd~q-----  344 (414)
T COG5379         278 FARRYPYPGEGALPAYLDEGVYESIRQNLR-----RVAIHHADIIELL---AGKPAGNVDRYILLDAQDWMTDGQ-----  344 (414)
T ss_pred             HHhcCCCCCCCCCChhhchhhHHHHHhhhh-----heeeecccHHHHh---ccCCCCCcceEEEecchhhcccch-----
Confidence            3455543112 2567788888888887664     5899999998743   222458899887776555665443     


Q ss_pred             chHHHHHHHHhccccCCEEEc
Q 026219          221 VQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       221 ~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       ...++.++.+-+.+|..++|
T Consensus       345 -ln~lws~isrta~~gA~Vif  364 (414)
T COG5379         345 -LNSLWSEISRTAEAGARVIF  364 (414)
T ss_pred             -HHHHHHHHhhccCCCcEEEE
Confidence             36899999999999998875

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=83.89  E-value=0.63  Score=35.27  Aligned_cols=19  Identities=32%  Similarity=0.558  Sum_probs=17.2

Q ss_pred             HHHHHHHHhccccCCEEEc
Q 026219          223 KPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       223 ~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+++.+++.|+|||.+++
T Consensus        24 ~~~f~~~~~~L~pGG~lil   42 (110)
T PF06859_consen   24 KRFFRRIYSLLRPGGILIL   42 (110)
T ss_dssp             HHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHhhCCCCEEEE
Confidence            4899999999999999985

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=83.36  E-value=11  Score=33.23  Aligned_cols=94  Identities=18%  Similarity=0.180  Sum_probs=55.2

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccc--cchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA--SVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~--~~~~~~~~~~~~~~~d  200 (241)
                      ++.+||-.|+|. |..+..+++...- ..+++++.+++..+.+++    .+..  .++..+-  .+.+....  ....+|
T Consensus       159 ~~~~vlI~g~g~~g~~~~~lA~~~G~-~~v~~~~~~~~~~~~l~~----~g~~--~~~~~~~~~~~~~~~~~--~~~~~d  229 (343)
T cd08236         159 LGDTVVVIGAGTIGLLAIQWLKILGA-KRVIAVDIDDEKLAVARE----LGAD--DTINPKEEDVEKVRELT--EGRGAD  229 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----cCCC--EEecCccccHHHHHHHh--CCCCCC
Confidence            456788888765 7788888887543 239999999887766532    3432  2222111  11111111  123477


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .++-....              ...+..+.+.|+++|+++
T Consensus       230 ~vld~~g~--------------~~~~~~~~~~l~~~G~~v  255 (343)
T cd08236         230 LVIEAAGS--------------PATIEQALALARPGGKVV  255 (343)
T ss_pred             EEEECCCC--------------HHHHHHHHHHhhcCCEEE
Confidence            66533211              256778899999999875

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=83.01  E-value=13  Score=32.84  Aligned_cols=95  Identities=13%  Similarity=0.120  Sum_probs=53.3

Q ss_pred             CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +.+||=.|+| .|..+..+++.... .+++++|.++...+.+++    .+.+. +.....+....+....  ....+|.+
T Consensus       167 g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~--~~~~~d~v  239 (345)
T cd08286         167 GDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT--DGRGVDVV  239 (345)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh--CCCCCCEE
Confidence            4454446765 45666677777663 478999998877666543    34322 1111122211122222  12347766


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +-....              ...++.+.+.|+++|+++
T Consensus       240 ld~~g~--------------~~~~~~~~~~l~~~g~~v  263 (345)
T cd08286         240 IEAVGI--------------PATFELCQELVAPGGHIA  263 (345)
T ss_pred             EECCCC--------------HHHHHHHHHhccCCcEEE
Confidence            532221              156778889999999886

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=82.86  E-value=15  Score=32.62  Aligned_cols=96  Identities=18%  Similarity=0.193  Sum_probs=55.2

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+||=.|+| .|..+..+++...- ..|+.++.+++..+.+++    .|..  .++..+-.+..+.+.....+.+|.+
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~d~v  247 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALGP-ANIIVVDIDEAKLEAAKA----AGAD--VVVNGSDPDAAKRIIKAAGGGVDAV  247 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----hCCc--EEecCCCccHHHHHHHHhCCCCcEE
Confidence            35677777876 56666677776543 378999999887777643    3432  2222111111111111112256766


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +-....              ...++...+.|+++|.++
T Consensus       248 id~~g~--------------~~~~~~~~~~l~~~g~~v  271 (350)
T cd08240         248 IDFVNN--------------SATASLAFDILAKGGKLV  271 (350)
T ss_pred             EECCCC--------------HHHHHHHHHHhhcCCeEE
Confidence            533221              267888899999999876

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=82.57  E-value=8.6  Score=35.35  Aligned_cols=100  Identities=17%  Similarity=0.208  Sum_probs=57.0

Q ss_pred             CCCcEEEEc-CC-ccHHHHHHHHHCC-CCcEEEEEeCCHHHHHHHHHHHHHh----CCCCEEEEEc----cccchHHhhc
Q 026219          124 TLPLMVDIG-SG-SGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQEL----ALSNIHFLFA----NASVSFKQLV  192 (241)
Q Consensus       124 ~~~~VLDIG-CG-tG~~~~~la~~~p-~~~~v~giDis~~~v~~a~~~~~~~----~l~ni~~~~~----D~~~~~~~~~  192 (241)
                      .+.+||=+| +| .|..+..+++... +..+|+++|.+++.++.+++.....    |. ...++..    |..+.+....
T Consensus       175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga-~~~~i~~~~~~~~~~~v~~~t  253 (410)
T cd08238         175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI-ELLYVNPATIDDLHATLMELT  253 (410)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc-eEEEECCCccccHHHHHHHHh
Confidence            356777786 45 7888888888742 2137999999999998887632100    11 1122211    1111111111


Q ss_pred             cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                        ....+|.++.....+              ..++...+.|+++|.++
T Consensus       254 --~g~g~D~vid~~g~~--------------~~~~~a~~~l~~~G~~v  285 (410)
T cd08238         254 --GGQGFDDVFVFVPVP--------------ELVEEADTLLAPDGCLN  285 (410)
T ss_pred             --CCCCCCEEEEcCCCH--------------HHHHHHHHHhccCCeEE
Confidence              123477665433322              67777889999888654

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=82.42  E-value=16  Score=32.28  Aligned_cols=92  Identities=11%  Similarity=0.091  Sum_probs=57.5

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE-c---cccchHHhhccCCCC
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF-A---NASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~-~---D~~~~~~~~~~~~~~  197 (241)
                      ++.+||=.|+  |.|..+..+++.. + .++++++.+++..+.+++.   .|...  ++. .   |..+.+....   +.
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~-G-~~Vi~~~~~~~~~~~~~~~---lGa~~--vi~~~~~~~~~~~i~~~~---~~  220 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLK-G-CYVVGSAGSDEKVDLLKNK---LGFDD--AFNYKEEPDLDAALKRYF---PN  220 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHh---cCCce--eEEcCCcccHHHHHHHhC---CC
Confidence            4678888886  5788888888875 3 5799999998877776542   35432  222 1   2222122211   24


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .+|.++-. ..              ...++...+.|+++|+++
T Consensus       221 gvd~v~d~-~g--------------~~~~~~~~~~l~~~G~iv  248 (338)
T cd08295         221 GIDIYFDN-VG--------------GKMLDAVLLNMNLHGRIA  248 (338)
T ss_pred             CcEEEEEC-CC--------------HHHHHHHHHHhccCcEEE
Confidence            57766532 21              155677889999999886

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd05281 TDH Threonine dehydrogenase

Probab=82.19  E-value=13  Score=32.89  Aligned_cols=94  Identities=14%  Similarity=0.127  Sum_probs=52.8

Q ss_pred             CCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +.+||=.|+|. |..+..+++.... ..+++++-+++-.+.+++    .+.+.+ .....+.. .+....  ....+|.+
T Consensus       164 g~~vlV~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~--~~~~vd~v  235 (341)
T cd05281         164 GKSVLITGCGPIGLMAIAVAKAAGA-SLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT--DGTGVDVV  235 (341)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc--CCCCCCEE
Confidence            45566677763 6777788887643 368888888876665543    343211 11111221 111211  12457765


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +-....              ...++.+.+.|+++|+++
T Consensus       236 ld~~g~--------------~~~~~~~~~~l~~~G~~v  259 (341)
T cd05281         236 LEMSGN--------------PKAIEQGLKALTPGGRVS  259 (341)
T ss_pred             EECCCC--------------HHHHHHHHHHhccCCEEE
Confidence            533222              256777889999999876

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=82.07  E-value=17  Score=32.52  Aligned_cols=92  Identities=11%  Similarity=0.080  Sum_probs=57.6

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc----cccchHHhhccCCCC
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA----NASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~----D~~~~~~~~~~~~~~  197 (241)
                      ++.+||=.|+  |.|..+..+++.. + .++++++.+++..+.+++   +.|.+.  ++..    |..+.+....   +.
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~-G-~~Vi~~~~~~~k~~~~~~---~lGa~~--vi~~~~~~~~~~~i~~~~---~~  227 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLH-G-CYVVGSAGSSQKVDLLKN---KLGFDE--AFNYKEEPDLDAALKRYF---PE  227 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHc-C-CEEEEEcCCHHHHHHHHH---hcCCCE--EEECCCcccHHHHHHHHC---CC
Confidence            4678888887  4888889999875 4 579999999987776642   235432  2221    2222121211   23


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .+|.++ ....              ...++...+.|++||+++
T Consensus       228 gvD~v~-d~vG--------------~~~~~~~~~~l~~~G~iv  255 (348)
T PLN03154        228 GIDIYF-DNVG--------------GDMLDAALLNMKIHGRIA  255 (348)
T ss_pred             CcEEEE-ECCC--------------HHHHHHHHHHhccCCEEE
Confidence            577654 3222              156677889999999886

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=81.78  E-value=7.8  Score=30.13  Aligned_cols=67  Identities=16%  Similarity=0.264  Sum_probs=35.6

Q ss_pred             CCcEEEEcCCcc-HHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSG-RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG-~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ..+|+|||-|.= ..+..|++.  + ..|+++|+.+.   .+       . ..+.++..|+.+.-..+.    ...|+|.
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~--G-~dV~~tDi~~~---~a-------~-~g~~~v~DDif~P~l~iY----~~a~lIY   75 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKER--G-FDVIATDINPR---KA-------P-EGVNFVVDDIFNPNLEIY----EGADLIY   75 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHH--S--EEEEE-SS-S---------------STTEE---SSS--HHHH----TTEEEEE
T ss_pred             CCcEEEECcCCCHHHHHHHHHc--C-CcEEEEECccc---cc-------c-cCcceeeecccCCCHHHh----cCCcEEE
Confidence            469999999965 555666666  4 67999999997   11       1 356789999976322222    3467776


Q ss_pred             EeCCCC
Q 026219          204 ILCPDP  209 (241)
Q Consensus       204 ~~~~~~  209 (241)
                      ..-|.+
T Consensus        76 SiRPP~   81 (127)
T PF03686_consen   76 SIRPPP   81 (127)
T ss_dssp             EES--T
T ss_pred             EeCCCh
Confidence            665544

; PDB: 2K4M_A.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=81.76  E-value=9.1  Score=35.76  Aligned_cols=84  Identities=12%  Similarity=0.069  Sum_probs=52.7

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+|+=+|+| .|......++.. + .+|+.+|+++...+.|+.    .|.   +..  +..+    ..    ...|+|
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~-G-a~ViV~d~d~~R~~~A~~----~G~---~~~--~~~e----~v----~~aDVV  261 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQ-G-ARVIVTEVDPICALQAAM----EGY---EVM--TMEE----AV----KEGDIF  261 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-C-CEEEEEECChhhHHHHHh----cCC---EEc--cHHH----HH----cCCCEE
Confidence            47899999999 466666666655 3 579999999987776643    343   221  1111    12    234665


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHH-HHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDS-IIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~-l~r~LkpGG~l~  240 (241)
                      +..-..+              ..++. ..+.+|+||+++
T Consensus       262 I~atG~~--------------~~i~~~~l~~mk~Ggilv  286 (413)
T cd00401         262 VTTTGNK--------------DIITGEHFEQMKDGAIVC  286 (413)
T ss_pred             EECCCCH--------------HHHHHHHHhcCCCCcEEE
Confidence            5432222              45554 588999999885

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08703 short chain dehydrogenase; Provisional

Probab=81.68  E-value=11  Score=31.26  Aligned_cols=59  Identities=10%  Similarity=-0.036  Sum_probs=39.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcccc
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS  185 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~  185 (241)
                      +.++|=.|+ +|.++..+++.+  .+ .+|++++.+++..+...+.+.+.+...+.++..|+.
T Consensus         6 ~k~vlItG~-sggiG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~   66 (239)
T PRK08703          6 DKTILVTGA-SQGLGEQVAKAYAAAG-ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLM   66 (239)
T ss_pred             CCEEEEECC-CCcHHHHHHHHHHHcC-CEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeec
Confidence            467888995 566666655544  24 689999999987766655554444334566777764

>PRK07102 short chain dehydrogenase; Provisional

Probab=81.63  E-value=8.6  Score=32.12  Aligned_cols=60  Identities=10%  Similarity=-0.047  Sum_probs=40.6

Q ss_pred             CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch
Q 026219          126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS  187 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~  187 (241)
                      .+++=.| |+|.++..+++++  .+ .+|++++.+++-.+...+.+...+-.++.++.+|+.+.
T Consensus         2 ~~vlItG-as~giG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   63 (243)
T PRK07102          2 KKILIIG-ATSDIARACARRYAAAG-ARLYLAARDVERLERLADDLRARGAVAVSTHELDILDT   63 (243)
T ss_pred             cEEEEEc-CCcHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence            3577777 4566666666554  24 68999999987666555544443335789999999763

>PLN02702 L-idonate 5-dehydrogenase

Probab=81.53  E-value=14  Score=33.10  Aligned_cols=98  Identities=13%  Similarity=0.148  Sum_probs=55.5

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE---ccccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF---ANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~---~D~~~~~~~~~~~~~~~~  199 (241)
                      .+.+||=+|+| .|..+..+++...- ..++++|.++...+.+++    .+.+.+..+.   .+..+.+..........+
T Consensus       181 ~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (364)
T PLN02702        181 PETNVLVMGAGPIGLVTMLAARAFGA-PRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKAMGGGI  255 (364)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhhcCCCC
Confidence            45677777875 56677777887543 358999999877776543    3543222111   122111111110112357


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |.|+-....+              ..+....+.|+++|+++
T Consensus       256 d~vid~~g~~--------------~~~~~~~~~l~~~G~~v  282 (364)
T PLN02702        256 DVSFDCVGFN--------------KTMSTALEATRAGGKVC  282 (364)
T ss_pred             CEEEECCCCH--------------HHHHHHHHHHhcCCEEE
Confidence            7654332212              56788899999999876

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=81.44  E-value=12  Score=33.94  Aligned_cols=43  Identities=16%  Similarity=0.205  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF  167 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~  167 (241)
                      ++.++.=+|+|. |.....-++.... .+++|||++++-.+.|++
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GA-srIIgvDiN~~Kf~~ak~  235 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGA-SRIIGVDINPDKFEKAKE  235 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCc-ccEEEEecCHHHHHHHHh
Confidence            478899999984 5555555666555 799999999999988865

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=81.37  E-value=3.8  Score=35.68  Aligned_cols=110  Identities=11%  Similarity=0.069  Sum_probs=63.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCC-----------CcEEEEEeCCHHHHHHHH-------------HH------------
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPD-----------SGNYLGLEIRQKLVKRAE-------------FW------------  168 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~-----------~~~v~giDis~~~v~~a~-------------~~------------  168 (241)
                      ...|+|+|-|+|...+.+-+.++.           ...+++++.+|.....+.             +-            
T Consensus        59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~  138 (252)
T COG4121          59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA  138 (252)
T ss_pred             ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence            568999999999888776654432           235788888754322211             10            


Q ss_pred             -HHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          169 -VQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       169 -~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                       +...|..++....+|+.+.++.....-+ .+|..++.-..|. +++    .+-.+.+++.+++..+|||++.
T Consensus       139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~-~~dAwflDgFsP~-kNP----~mW~~e~l~~~a~~~~~~~~l~  205 (252)
T COG4121         139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRP-GTDAWFLDGFRPV-KNP----EMWEDELLNLMARIPYRDPTLA  205 (252)
T ss_pred             HhhhcchheeeeeeeehhhcCCccccccc-CccEEecCCcccc-CCh----hhccHHHHHHHHhhcCCCCcee
Confidence             1011333566777888764433211111 5666554322221 111    2334699999999999999873

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=81.35  E-value=4.2  Score=35.37  Aligned_cols=48  Identities=25%  Similarity=0.201  Sum_probs=41.2

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL  172 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~  172 (241)
                      ...+.+|||-=+|+|.++....+..   -.++|+|++++-++.+.++....
T Consensus       220 s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         220 SFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             CCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHhh
Confidence            3458999999999999999887764   35999999999999999988754

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=81.28  E-value=15  Score=32.41  Aligned_cols=94  Identities=15%  Similarity=0.100  Sum_probs=55.2

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc------hHHhhccCCC
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV------SFKQLVSSYP  196 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~------~~~~~~~~~~  196 (241)
                      ++.+||=.|+|. |..+..+++.... ..+++++.+++..+.+++    .+.++  ++..+-..      .+....  ..
T Consensus       162 ~g~~vlI~g~g~vG~~a~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~~~~~~--~~  232 (343)
T cd05285         162 PGDTVLVFGAGPIGLLTAAVAKAFGA-TKVVVTDIDPSRLEFAKE----LGATH--TVNVRTEDTPESAEKIAELL--GG  232 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----cCCcE--EeccccccchhHHHHHHHHh--CC
Confidence            356666678764 7788888887654 238999998887776643    23322  22111111      111111  12


Q ss_pred             CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ..+|.|+-....              ...++...+.|+++|+++
T Consensus       233 ~~~d~vld~~g~--------------~~~~~~~~~~l~~~G~~v  262 (343)
T cd05285         233 KGPDVVIECTGA--------------ESCIQTAIYATRPGGTVV  262 (343)
T ss_pred             CCCCEEEECCCC--------------HHHHHHHHHHhhcCCEEE
Confidence            347766543221              147788899999999876

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=81.12  E-value=9  Score=37.64  Aligned_cols=74  Identities=15%  Similarity=0.143  Sum_probs=44.7

Q ss_pred             CcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          126 PLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       126 ~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..|+=+|+| .|.......++. + ..++.+|.+++.++.+++       .+..++.+|+++. +.+..-.-...+.+++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~-g-~~vvvID~d~~~v~~~~~-------~g~~v~~GDat~~-~~L~~agi~~A~~vvv  470 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSS-G-VKMTVLDHDPDHIETLRK-------FGMKVFYGDATRM-DLLESAGAAKAEVLIN  470 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhC-C-CCEEEEECCHHHHHHHHh-------cCCeEEEEeCCCH-HHHHhcCCCcCCEEEE
Confidence            557767776 444444433332 3 469999999999988754       2457899999863 1111111234566666


Q ss_pred             eCCCC
Q 026219          205 LCPDP  209 (241)
Q Consensus       205 ~~~~~  209 (241)
                      ...++
T Consensus       471 ~~~d~  475 (621)
T PRK03562        471 AIDDP  475 (621)
T ss_pred             EeCCH
Confidence            65554

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=80.95  E-value=15  Score=32.47  Aligned_cols=95  Identities=12%  Similarity=0.099  Sum_probs=52.5

Q ss_pred             CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +.+||=.|+| .|..+..+++.... ..|++++.++...+.+++    .+... +.....+..+.+....  ....+|.+
T Consensus       162 g~~vlI~~~g~vg~~a~~la~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~--~~~~~d~v  234 (340)
T TIGR00692       162 GKSVLVTGAGPIGLMAIAVAKASGA-YPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT--DGEGVDVF  234 (340)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc--CCCCCCEE
Confidence            4556556765 56677777776543 238899888877666543    34321 1111112211111111  12447766


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +-....              ...+.++.+.|+++|+++
T Consensus       235 ld~~g~--------------~~~~~~~~~~l~~~g~~v  258 (340)
T TIGR00692       235 LEMSGA--------------PKALEQGLQAVTPGGRVS  258 (340)
T ss_pred             EECCCC--------------HHHHHHHHHhhcCCCEEE
Confidence            533221              256778899999999875

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=80.91  E-value=13  Score=34.53  Aligned_cols=56  Identities=18%  Similarity=0.179  Sum_probs=39.1

Q ss_pred             CcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          126 PLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       126 ~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      .+||=|||| .|........+..+ .+|+..|.|++..+.+....    ..+++.++.|+.+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~----~~~v~~~~vD~~d   58 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELI----GGKVEALQVDAAD   58 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhc----cccceeEEecccC
Confidence            468899996 45555554333444 68999999998877765432    2378889989876

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=80.86  E-value=1.3  Score=39.02  Aligned_cols=38  Identities=8%  Similarity=0.110  Sum_probs=30.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHH
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVK  163 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~  163 (241)
                      .+.+|||+|||.|.-.+.......  ..+...|+|.+.++
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLR  153 (282)
T ss_pred             cCceeEecCCcccccchhhhhhcc--ceeeeEecchhhee
Confidence            468999999999988888766542  46888899888774

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=80.71  E-value=14  Score=32.80  Aligned_cols=96  Identities=17%  Similarity=0.108  Sum_probs=54.1

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+||=.|+| .|..+..+++...- ..|++++.+++..+.+++    .|.+.+ .....|..+.+....  ....+|.
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~-~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~--~~~~~d~  244 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGA-SKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT--GGGGVDV  244 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh--CCCCCCE
Confidence            35666667764 45666667776532 279999999988777643    343211 111112111111111  1234786


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |+-....+              ..++.+.+.|+++|+++
T Consensus       245 vid~~g~~--------------~~~~~~~~~l~~~G~~v  269 (351)
T cd08233         245 SFDCAGVQ--------------ATLDTAIDALRPRGTAV  269 (351)
T ss_pred             EEECCCCH--------------HHHHHHHHhccCCCEEE
Confidence            65433222              56778889999999876

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=80.61  E-value=5.6  Score=34.40  Aligned_cols=75  Identities=21%  Similarity=0.259  Sum_probs=45.3

Q ss_pred             HHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhc
Q 026219          139 LIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKR  218 (241)
Q Consensus       139 ~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~  218 (241)
                      +..|.+..++ .+|+|+|.++..++.|++    .|.-.  -...+ .+   . +    ...|+|++.-|...        
T Consensus         2 A~aL~~~g~~-~~v~g~d~~~~~~~~a~~----~g~~~--~~~~~-~~---~-~----~~~DlvvlavP~~~--------   57 (258)
T PF02153_consen    2 ALALRKAGPD-VEVYGYDRDPETLEAALE----LGIID--EASTD-IE---A-V----EDADLVVLAVPVSA--------   57 (258)
T ss_dssp             HHHHHHTTTT-SEEEEE-SSHHHHHHHHH----TTSSS--EEESH-HH---H-G----GCCSEEEE-S-HHH--------
T ss_pred             hHHHHhCCCC-eEEEEEeCCHHHHHHHHH----CCCee--eccCC-Hh---H-h----cCCCEEEEcCCHHH--------
Confidence            5667777777 899999999998887753    35421  11111 11   1 2    22487877765322        


Q ss_pred             ccchHHHHHHHHhccccCCEEE
Q 026219          219 RVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       219 r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                         ...+++++...+++|+.+.
T Consensus        58 ---~~~~l~~~~~~~~~~~iv~   76 (258)
T PF02153_consen   58 ---IEDVLEEIAPYLKPGAIVT   76 (258)
T ss_dssp             ---HHHHHHHHHCGS-TTSEEE
T ss_pred             ---HHHHHHHhhhhcCCCcEEE
Confidence               2588999999999988764

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK10083 putative oxidoreductase; Provisional

Probab=80.35  E-value=19  Score=31.68  Aligned_cols=95  Identities=8%  Similarity=0.033  Sum_probs=51.5

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHH-CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~-~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .+.+||=.|+| .|..+..+++. ..- ..++++|.+++..+.+++    .|.+.  ++..+-......+ ......+|.
T Consensus       160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~----~Ga~~--~i~~~~~~~~~~~-~~~g~~~d~  231 (339)
T PRK10083        160 EQDVALIYGAGPVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKE----SGADW--VINNAQEPLGEAL-EEKGIKPTL  231 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHH----hCCcE--EecCccccHHHHH-hcCCCCCCE
Confidence            35677778865 44555666664 333 368999999988777654    34421  1111111111111 111122444


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++-....+              ..++...+.|+++|+++
T Consensus       232 vid~~g~~--------------~~~~~~~~~l~~~G~~v  256 (339)
T PRK10083        232 IIDAACHP--------------SILEEAVTLASPAARIV  256 (339)
T ss_pred             EEECCCCH--------------HHHHHHHHHhhcCCEEE
Confidence            43222212              56777889999999886

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=80.30  E-value=30  Score=30.32  Aligned_cols=94  Identities=11%  Similarity=0.027  Sum_probs=56.3

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHh-hccCCCCcEe
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQ-LVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~-~~~~~~~~~d  200 (241)
                      ++.+||=.|.  |.|..+..+++.. + .++++++.+++..+.+++    .|.+.  ++..+-.+.+.. .....+..+|
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~-G-~~Vi~~~~s~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~~~~~gvd  209 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLK-G-CKVVGAAGSDEKVAYLKK----LGFDV--AFNYKTVKSLEETLKKASPDGYD  209 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHH----cCCCE--EEeccccccHHHHHHHhCCCCeE
Confidence            4677877774  5888888898875 4 579999999987777643    45432  222111011111 1111124578


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .|+-... .              ..++...+.|++||+++
T Consensus       210 vv~d~~G-~--------------~~~~~~~~~l~~~G~iv  234 (325)
T TIGR02825       210 CYFDNVG-G--------------EFSNTVIGQMKKFGRIA  234 (325)
T ss_pred             EEEECCC-H--------------HHHHHHHHHhCcCcEEE
Confidence            6653222 1              44577889999999986

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
1yzh_A	214	Crystal Structure Of The Conserved Hypothetical Pro		2e-05
2fca_A	213	The Structure Of Bstrmb Length = 213		5e-05

>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein, Methyltransferase From Streptococcus Pneumoniae Tigr4 Length = 214

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS 175
           W +++ N   P+ V++GSG G F+   A++NPD  NY+G++I++ ++  A   V E+ + 
Sbjct: 34  WRDLFGNDN-PIHVEVGSGKGAFVSGXAKQNPDI-NYIGIDIQKSVLSYALDKVLEVGVP 91
Query: 176 NIHFLFANAS 185
           NI  L+ + S
Sbjct: 92  NIKLLWVDGS 101

>pdb|2FCA|A Chain A, The Structure Of Bstrmb Length = 213

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS 175
           W+ V+ N   P+ +++G+G G+F+  +A++NPD  NY+G+E+ + ++  A   V++    
Sbjct: 31  WNTVFGNDN-PIHIEVGTGKGQFISGMAKQNPDI-NYIGIELFKSVIVTAVQKVKDSEAQ 88
Query: 176 NIHFLFANASVSFKQLVSSY-PGPLMLVSILCPDP 209
           N+  L  +A      L   + PG +  V +   DP
Sbjct: 89  NVKLLNIDADT----LTDVFEPGEVKRVYLNFSDP 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	2e-40
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	2e-39
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	7e-30
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	1e-27
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	3e-27
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	9e-21
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	3e-16
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	2e-06
3lpm_A	259	Putative methyltransferase; structural genomics, p	2e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	2e-05
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	7e-05
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	8e-05

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Length = 246

 Score =  137 bits (348), Expect = 2e-40
 Identities = 46/169 (27%), Positives = 65/169 (38%), Gaps = 23/169 (13%)

Query: 93  HARIRQHVNPLS-SSFTVPAP--IPDWSEVY---------KNPTLPLMVDIGSGSGRFLI 140
           + R R H NP S      P      DWS++Y         +      + DIG G G  +I
Sbjct: 6   YYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMI 65

Query: 141 WLARRNPDSGNYLGLEIRQKLVKRA--------EFWVQELALSNIHFLFANASVSFKQLV 192
            L+   P+    LG+EIR ++                 +    NI+ L  NA        
Sbjct: 66  DLSPAFPED-LILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF 124

Query: 193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
               G L  +    PDPHFK++ HK R++   L+      L  GG VY 
Sbjct: 125 E--KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Length = 235

 Score =  135 bits (341), Expect = 2e-39
 Identities = 45/150 (30%), Positives = 62/150 (41%), Gaps = 11/150 (7%)

Query: 98  QHVNPLSSSFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEI 157
           +   PL+ + +   P  D  E           DIG G G  L+ L+   PD+   LGLEI
Sbjct: 22  EFFAPLTQNQSHDDPK-DKKEKRAQ-AQVEFADIGCGYGGLLVELSPLFPDT-LILGLEI 78

Query: 158 RQKLVKRAEFWVQELA------LSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHF 211
           R K+    +  ++ L         NI  L +NA            G L  +  L PDPHF
Sbjct: 79  RVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY--KGQLTKMFFLFPDPHF 136

Query: 212 KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
           K+  HK R++   L+      L  GG VY 
Sbjct: 137 KRTKHKWRIISPTLLAEYAYVLRVGGLVYT 166

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* Length = 218

 Score =  110 bits (276), Expect = 7e-30
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 4/136 (2%)

Query: 106 SFTVPAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA 165
                  + D+  ++     P+ ++IG G G  L+ +A+  P+  ++LG+E+    V   
Sbjct: 17  GVEFSEDMLDFPALFGREA-PVTLEIGFGMGASLVAMAKDRPEQ-DFLGIEVHSPGVGAC 74

Query: 166 EFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPL 225
                E  LSN+  +  +A     +++      L +V +  PDP  K +H+KRR+VQ P 
Sbjct: 75  LASAHEEGLSNLRVMCHDAVEVLHKMIP--DNSLRMVQLFFPDPWHKARHNKRRIVQVPF 132

Query: 226 VDSIIDYLMPGGKVYF 241
            + +   L  GG  + 
Sbjct: 133 AELVKSKLQLGGVFHM 148

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213

 Score =  104 bits (261), Expect = 1e-27
 Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 5/127 (3%)

Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174
            W+ V+ N   P+ +++G+G G+F+  +A++NPD  NY+G+E+ + ++  A   V++   
Sbjct: 30  KWNTVFGNDN-PIHIEVGTGKGQFISGMAKQNPDI-NYIGIELFKSVIVTAVQKVKDSEA 87

Query: 175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234
            N+  L  +A           PG +  V +   DP  KK+H KRR+     +    + + 
Sbjct: 88  QNVKLLNIDADTLTDVFE---PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMG 144

Query: 235 PGGKVYF 241
            GG ++F
Sbjct: 145 KGGSIHF 151

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Length = 214

 Score =  103 bits (258), Expect = 3e-27
 Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 6/133 (4%)

Query: 110 PAPIP-DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW 168
           P      W +++ N   P+ V++GSG G F+  +A++NPD  NY+G++I++ ++  A   
Sbjct: 27  PLEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDI-NYIGIDIQKSVLSYALDK 84

Query: 169 VQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDS 228
           V E+ + NI  L+ + S           G +  + +   DP  KK+H KRR+  K  +D+
Sbjct: 85  VLEVGVPNIKLLWVDGSDLTDYFE---DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDT 141

Query: 229 IIDYLMPGGKVYF 241
               L   G+++F
Sbjct: 142 FKRILPENGEIHF 154

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 86.3 bits (213), Expect = 9e-21
 Identities = 20/131 (15%), Positives = 47/131 (35%), Gaps = 15/131 (11%)

Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIR----QKLVKRAEFWVQ 170
           ++ ++       +++D+G+G G+    +AR+NP     + L+      +K+  +A     
Sbjct: 19  EFEQLRSQYD-DVVLDVGTGDGKHPYKVARQNPSR-LVVALDADKSRMEKISAKAAAKPA 76

Query: 171 ELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSII 230
           +  L N+ +L+A A           P    +  +    P +             ++  + 
Sbjct: 77  KGGLPNLLYLWATA--------ERLPPLSGVGELHVLMP-WGSLLRGVLGSSPEMLRGMA 127

Query: 231 DYLMPGGKVYF 241
               PG     
Sbjct: 128 AVCRPGASFLV 138

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 74.1 bits (181), Expect = 3e-16
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 13/131 (9%)

Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIR----QKLVKRAEFWVQ 170
           + +E+       + +D+G+G GR +  LA  + +   Y+G++        + K+      
Sbjct: 16  ELTEIIGQFD-RVHIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPS 73

Query: 171 ELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSII 230
           +  LSN+ F+ A A    + L          +SIL P               + ++ ++ 
Sbjct: 74  KGGLSNVVFVIAAA----ESLPFELKNIADSISILFPWG---TLLEYVIKPNRDILSNVA 126

Query: 231 DYLMPGGKVYF 241
           D         F
Sbjct: 127 DLAKKEAHFEF 137

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 4/112 (3%)

Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-ALSNIHFLFANASVS 187
           VD   G+G    +LA    ++G   G +I+ K +      + +L  +  +  +       
Sbjct: 27  VDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNM 86

Query: 188 FKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239
            K +         ++  L   P        R       +   ++ L+ GG +
Sbjct: 87  DKYIDCPVKA---VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGII 135

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN---------IH 178
           ++D+ SG+G   + L+ R       +G+EI+++L   A+  V    L +           
Sbjct: 53  IIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKK 110

Query: 179 FLFANASVSFKQLVSSYP-GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG 237
                       +  + P       S+   + HF+   H+     +  +      L  GG
Sbjct: 111 ITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGG 170

Query: 238 KVYF 241
           K  F
Sbjct: 171 KANF 174

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
           + G G G   + LA+ NPD      ++I  + +++A    ++  + N+ FL AN 
Sbjct: 43  EAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANI 96

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 14/56 (25%), Positives = 33/56 (58%)

Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
           +D+G+G+G +L +L++   + G    +++++++V  A   V +L L N+  L +  
Sbjct: 42  LDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE 97

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 41.9 bits (98), Expect = 8e-05
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA 184
           D G G G   + L    P+   Y G++  + L+  A    + L   +  FL  +A
Sbjct: 28  DYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDA 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.91
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.9
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.89
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.87
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.87
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.74
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.72
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.72
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.71
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.71
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.7
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.7
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.7
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.69
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.69
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.68
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.68
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.68
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.68
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.68
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.68
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.68
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.68
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.68
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.67
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.67
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.67
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.67
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.67
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.67
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.67
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.67
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.66
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.66
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.66
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.65
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.65
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.65
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.65
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.65
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.64
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.64
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.64
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.64
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.64
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.64
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.64
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.64
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.63
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.63
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.63
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.63
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.63
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.63
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.62
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.62
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.62
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.62
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.62
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.62
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.61
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.61
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.61
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.61
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.61
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.61
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.61
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.6
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.6
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.6
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.6
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.6
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.6
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.6
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.6
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.6
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.6
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.6
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.6
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.6
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.6
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.59
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.59
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.59
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.59
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.59
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.59
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.59
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.59
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.59
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.59
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.59
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.58
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.58
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.58
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.58
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.58
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.58
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.58
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.58
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.57
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.57
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.57
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.57
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.57
3ocj_A	305	Putative exported protein; structural genomics, PS	99.57
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.57
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.56
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.56
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.56
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.56
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.56
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.56
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.56
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.56
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.56
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.55
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.55
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.55
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.55
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.55
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.55
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.55
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.54
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.54
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.54
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.54
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.54
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.54
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.54
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.54
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.53
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.53
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.53
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.53
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.53
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.53
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.53
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.53
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.53
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.53
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.53
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.53
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.53
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.52
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.52
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.52
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.52
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.51
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.51
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.51
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.51
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.51
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.51
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.5
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.5
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.5
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.5
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.5
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.5
2o07_A	304	Spermidine synthase; structural genomics, structur	99.5
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.5
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.49
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.49
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.49
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.49
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.49
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.49
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.49
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.49
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.48
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.48
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.48
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.47
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.47
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.47
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.47
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.47
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.47
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.47
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.47
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.47
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.46
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.46
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.46
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.46
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.45
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.45
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.45
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.45
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.44
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.44
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.44
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.43
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.43
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.43
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.43
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.43
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.43
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.43
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.42
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.42
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.42
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.42
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.41
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.41
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.4
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.4
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.39
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.39
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.39
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.39
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.39
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.38
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.37
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.36
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.36
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.35
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.35
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.34
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.33
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.33
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.33
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.32
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.32
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.31
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.31
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.31
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.3
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.28
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.28
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.27
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.27
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.27
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.26
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.26
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.25
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.25
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.25
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.24
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.24
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.22
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.22
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.22
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.21
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.17
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.15
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.15
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.14
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.13
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.11
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.09
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.09
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.09
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.07
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.07
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.06
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.05
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.04
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.04
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.03
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.0
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.98
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.97
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.97
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.95
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.92
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.91
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.9
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.88
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.86
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.85
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.82
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.82
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.82
3khk_A	544	Type I restriction-modification system methylation	98.7
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.69
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.69
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.63
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.61
3lkd_A	542	Type I restriction-modification system methyltrans	98.6
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.59
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.48
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.4
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.19
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.14
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.12
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.11
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.09
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.07
3ufb_A	530	Type I restriction-modification system methyltran	97.99
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.88
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.85
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.78
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.62
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.59
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.59
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.54
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.5
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.48
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	97.25
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.19
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.18
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.1
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.07
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.96
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.93
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.74
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	96.69
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.69
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.45
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.39
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.33
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.25
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.23
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.22
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.1
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.99
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.9
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.77
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.72
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.71
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.71
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.67
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.65
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.57
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.48
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.47
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.47
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.45
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.44
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.44
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.4
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.38
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.37
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.26
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.11
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.11
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.84
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	94.83
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.82
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.76
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.75
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	94.73
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.71
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.47
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.38
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	94.37
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	94.33
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.31
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	94.29
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.19
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	94.17
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.02
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	93.94
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.81
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	93.58
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.58
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.46
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.24
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	92.87
4eye_A	342	Probable oxidoreductase; structural genomics, niai	92.81
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	92.33
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	92.25
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	92.08
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.83
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.62
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	91.37
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	91.32
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	91.3
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	91.22
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.18
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	91.0
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	90.8
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	90.63
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	90.56
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	90.34
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	90.28
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	90.24
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	90.16
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	90.15
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	90.11
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	89.9
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	89.01
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	88.94
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	88.9
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	88.44
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	88.27
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	87.95
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	87.69
3me5_A	482	Cytosine-specific methyltransferase; structural ge	87.35
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	87.07
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	86.44
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	86.27
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	85.88
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	85.76
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	85.39
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	85.25
1lnq_A	336	MTHK channels, potassium channel related protein;	85.15
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	85.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	84.85
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	84.63
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	84.36
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	84.16
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	84.14
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	83.99
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	83.97
1id1_A	153	Putative potassium channel protein; RCK domain, E.	83.95
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	82.95
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	82.68
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	82.56
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	82.3
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	82.2
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	82.16
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	82.1
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	81.7
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	81.09
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	80.62
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	80.25
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	80.18

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.91  E-value=6.7e-24  Score=180.89  Aligned_cols=149  Identities=32%  Similarity=0.495  Sum_probs=112.5

Q ss_pred             ccCccceecccccCCCC-CCCCCC--hhhhHHHhcC---------CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeC
Q 026219           90 ELGHARIRQHVNPLSSS-FTVPAP--IPDWSEVYKN---------PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEI  157 (241)
Q Consensus        90 ~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~---------~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDi  157 (241)
                      ++..+|+|++.||+.+. +.++..  ..+|.+.|..         +++.+|||||||+|.++..+++.+++ .+|+|||+
T Consensus         3 ~~~~~r~r~~~np~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~   81 (246)
T 2vdv_E            3 KKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEI   81 (246)
T ss_dssp             -----------CTTGGGSCSSCCCCCCCCGGGTCGGGBC----CBSCCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEES
T ss_pred             cccceeccCCcchhhhhcCcccCCCCCCCHHHHhCcccccccccCCCCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEc
Confidence            35567999999999885 344432  2478877765         35689999999999999999999987 89999999


Q ss_pred             CHHHHHHHHHHHHHh--------CCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHH
Q 026219          158 RQKLVKRAEFWVQEL--------ALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSI  229 (241)
Q Consensus       158 s~~~v~~a~~~~~~~--------~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l  229 (241)
                      |+.+++.|+++++.+        ++.|++++.+|+.+.++..+  .++++|.|++++++||++.++.++|.++..+++++
T Consensus        82 s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~--~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~  159 (246)
T 2vdv_E           82 RVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF--EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEY  159 (246)
T ss_dssp             CHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS--CTTCEEEEEEESCCCC------CSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc--cccccCEEEEECCCcccccchhHHhhccHHHHHHH
Confidence            999999999998876        77899999999987544333  36889999999999999999999999999999999


Q ss_pred             HhccccCCEEEc
Q 026219          230 IDYLMPGGKVYF  241 (241)
Q Consensus       230 ~r~LkpGG~l~~  241 (241)
                      .++|+|||.|++
T Consensus       160 ~~~LkpgG~l~~  171 (246)
T 2vdv_E          160 AYVLKEGGVVYT  171 (246)
T ss_dssp             HHHEEEEEEEEE
T ss_pred             HHHcCCCCEEEE
Confidence            999999999875

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.90  E-value=2e-23  Score=175.75  Aligned_cols=124  Identities=27%  Similarity=0.510  Sum_probs=113.1

Q ss_pred             hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc
Q 026219          114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       114 ~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~  193 (241)
                      .+|...|.. ++++|||||||+|.++..+++.+|+ ..|+|||+|+.+++.|++++++.+++|++++.+|+.+.++..+ 
T Consensus        25 ~d~~~~f~~-~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~-  101 (218)
T 3dxy_A           25 LDFPALFGR-EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI-  101 (218)
T ss_dssp             CCHHHHHSS-CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS-
T ss_pred             CCHHHHcCC-CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc-
Confidence            478888876 4789999999999999999999998 8999999999999999999999999999999999987555433 


Q ss_pred             CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       +++++|.|+++|++||++.++.++|+++..+++++.++|||||.|+|
T Consensus       102 -~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i  148 (218)
T 3dxy_A          102 -PDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHM  148 (218)
T ss_dssp             -CTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEE
T ss_pred             -CCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEE
Confidence             47899999999999999999999999999999999999999999975

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.89  E-value=2.3e-22  Score=168.23  Aligned_cols=123  Identities=28%  Similarity=0.558  Sum_probs=110.2

Q ss_pred             hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc
Q 026219          114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       114 ~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~  193 (241)
                      .+|...|.. ++.+|||||||+|.++..+++.+|+ .+++|||+|+.+++.|++++++.+++|++++++|+.+ ++..+ 
T Consensus        29 ~~~~~~f~~-~~~~vLDiGcG~G~~~~~la~~~p~-~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~-  104 (213)
T 2fca_A           29 GKWNTVFGN-DNPIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVF-  104 (213)
T ss_dssp             TCHHHHHTS-CCCEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHC-
T ss_pred             CCHHHHcCC-CCceEEEEecCCCHHHHHHHHHCCC-CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhc-
Confidence            478888875 4789999999999999999999988 8999999999999999999999888899999999986 33323 


Q ss_pred             CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       .++++|.|++++++||++.+++++|+++..+++++.++|||||.|+|
T Consensus       105 -~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~  151 (213)
T 2fca_A          105 -EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF  151 (213)
T ss_dssp             -CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred             -CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEE
Confidence             36789999999999999988888999899999999999999999975

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.87  E-value=5.2e-22  Score=168.91  Aligned_cols=115  Identities=35%  Similarity=0.498  Sum_probs=92.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH------hCCCCEEEEEccccchHHhhccCCCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE------LALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~------~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      ++.+|||||||+|.++..+++.+|+ ..|+|||+|+.|++.|+++++.      .+..|++++++|+.+.++..+  .++
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~--~~~  122 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPD-TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF--YKG  122 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTT-SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHC--CTT
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhC--CCc
Confidence            4678999999999999999999988 8999999999999999988764      356799999999986555433  368


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++|.|++++++||++.+++++|+++..+++++.++|||||.|+|
T Consensus       123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~  166 (235)
T 3ckk_A          123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYT  166 (235)
T ss_dssp             CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEE
T ss_pred             CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEE
Confidence            99999999999999999999999999999999999999999975

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.87  E-value=4.2e-21  Score=159.86  Aligned_cols=122  Identities=31%  Similarity=0.579  Sum_probs=109.0

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      .|.+.+.. ++.+|||||||+|.++..+++.+|+ .+++|+|+|+.+++.|+++++..+++|++++.+|+.+ ++..+  
T Consensus        33 ~~~~~f~~-~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~--  107 (214)
T 1yzh_A           33 KWRDLFGN-DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYF--  107 (214)
T ss_dssp             THHHHHTS-CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTS--
T ss_pred             CHHHHcCC-CCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhc--
Confidence            68888864 4689999999999999999999988 8999999999999999999999998899999999986 22212  


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++++|.|++++++||++.++++++..+..+++++.++|+|||.++|
T Consensus       108 ~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  154 (214)
T 1yzh_A          108 EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  154 (214)
T ss_dssp             CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEE
Confidence            36789999999999999988888999999999999999999999875

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.74  E-value=1.2e-17  Score=144.07  Aligned_cols=111  Identities=13%  Similarity=0.222  Sum_probs=87.5

Q ss_pred             hHHHhcCCCCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhc
Q 026219          116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLV  192 (241)
Q Consensus       116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~  192 (241)
                      +.+.+.+ ++.+|||||||+|..+..+++++  ++ ++|+|||+|+.|++.|+++++..+. .+++++++|+.+     +
T Consensus        63 l~~~~~~-~~~~vLDlGcGtG~~~~~la~~~~~~~-~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~-----~  135 (261)
T 4gek_A           63 LAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDN-CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD-----I  135 (261)
T ss_dssp             HHHHHCC-TTCEEEEETCTTTHHHHHHHHTCCSSS-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT-----C
T ss_pred             HHHHhCC-CCCEEEEEeCCCCHHHHHHHHhcCCCC-CEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc-----c
Confidence            3344444 47899999999999999999986  35 7999999999999999999987776 479999999976     3


Q ss_pred             cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +  ...+|.|++++...+....      -...++++++++|||||.++|
T Consensus       136 ~--~~~~d~v~~~~~l~~~~~~------~~~~~l~~i~~~LkpGG~lii  176 (261)
T 4gek_A          136 A--IENASMVVLNFTLQFLEPS------ERQALLDKIYQGLNPGGALVL  176 (261)
T ss_dssp             C--CCSEEEEEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             c--ccccccceeeeeeeecCch------hHhHHHHHHHHHcCCCcEEEE
Confidence            2  3568998887754433211      013799999999999999875

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.72  E-value=8.3e-18  Score=141.92  Aligned_cols=123  Identities=19%  Similarity=0.193  Sum_probs=94.0

Q ss_pred             CCChhhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCC-HHHHHHH---HHHHHHhCCCCEEEEEcccc
Q 026219          110 PAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIR-QKLVKRA---EFWVQELALSNIHFLFANAS  185 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis-~~~v~~a---~~~~~~~~l~ni~~~~~D~~  185 (241)
                      ++...+|.+.+..+ +.+|||||||+|.++..++++.++ .+|+|||+| +.|++.|   ++++++.+++|++++++|+.
T Consensus        11 ~~~~~~~~~~~~~~-~~~vLDiGCG~G~~~~~la~~~~~-~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~   88 (225)
T 3p2e_A           11 DLSKDELTEIIGQF-DRVHIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAE   88 (225)
T ss_dssp             CCCHHHHHHHHTTC-SEEEEEETCTTSHHHHHHHHTCTT-EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTT
T ss_pred             cCCHHHHHHHhCCC-CCEEEEEeccCcHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHH
Confidence            34455677766653 689999999999999999988888 899999999 7777766   77777778889999999998


Q ss_pred             chHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          186 VSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       186 ~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +. +.   .+...+|.+.++++.+.  . ....+.....++++++|+|||||.++|
T Consensus        89 ~l-~~---~~~d~v~~i~~~~~~~~--~-~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           89 SL-PF---ELKNIADSISILFPWGT--L-LEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             BC-CG---GGTTCEEEEEEESCCHH--H-HHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             Hh-hh---hccCeEEEEEEeCCCcH--H-hhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            63 21   12367888888886542  2 222233346899999999999999875

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.72  E-value=4.1e-17  Score=139.08  Aligned_cols=111  Identities=13%  Similarity=0.226  Sum_probs=90.9

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      .+.+.....++.+|||||||+|.++..+++..+   +|+|+|+|+.|++.|+++++..++++++++.+|+.+     .+.
T Consensus        28 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-----l~~   99 (260)
T 1vl5_A           28 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ-----MPF   99 (260)
T ss_dssp             HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C-----CCS
T ss_pred             HHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh-----CCC
Confidence            344445444578999999999999999999853   699999999999999999998888899999999976     344


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++++||+|+......|..+.        ..+++++.++|||||.+++
T Consensus       100 ~~~~fD~V~~~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~~  138 (260)
T 1vl5_A          100 TDERFHIVTCRIAAHHFPNP--------ASFVSEAYRVLKKGGQLLL  138 (260)
T ss_dssp             CTTCEEEEEEESCGGGCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCEEEEEEhhhhHhcCCH--------HHHHHHHHHHcCCCCEEEE
Confidence            56899999887655444333        4999999999999999875

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.71  E-value=5.2e-17  Score=131.45  Aligned_cols=111  Identities=14%  Similarity=0.244  Sum_probs=82.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.++..++++  . .+|+|+|+|++|++.|++++++.+++|++++++|+.+ ++   ...+++||.|+
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~--~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~-l~---~~~~~~fD~v~   94 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL--S-KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHEN-LD---HYVREPIRAAI   94 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT--S-SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGG-GG---GTCCSCEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--C-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHH-HH---hhccCCcCEEE
Confidence            4689999999999999999997  4 6899999999999999999999888899999977764 21   12367899997


Q ss_pred             EeCCC-CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPD-PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~-~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+++. ++..............+++++.++|||||.+++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i  133 (185)
T 3mti_A           95 FNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAI  133 (185)
T ss_dssp             EEEC-----------CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEE
Confidence            76421 110000000011224789999999999999875

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.71  E-value=2.2e-16  Score=129.94  Aligned_cols=105  Identities=18%  Similarity=0.156  Sum_probs=87.9

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      ....++.+|||||||+|.++..+++..+. .+|+|+|+|+++++.|+++++..++++++++.+|+.+.++     ....+
T Consensus        36 l~~~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~  109 (204)
T 3e05_A           36 LRLQDDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-----DLPDP  109 (204)
T ss_dssp             TTCCTTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-----TSCCC
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-----cCCCC
Confidence            33345789999999999999999999887 8999999999999999999999888889999999975321     12568


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|++..+....           ..+++++.++|||||++++
T Consensus       110 D~i~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~  140 (204)
T 3e05_A          110 DRVFIGGSGGML-----------EEIIDAVDRRLKSEGVIVL  140 (204)
T ss_dssp             SEEEESCCTTCH-----------HHHHHHHHHHCCTTCEEEE
T ss_pred             CEEEECCCCcCH-----------HHHHHHHHHhcCCCeEEEE
Confidence            988877654311           4999999999999999975

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.70  E-value=1.4e-16  Score=134.92  Aligned_cols=108  Identities=20%  Similarity=0.254  Sum_probs=87.8

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      ......++.+|||||||+|.++..+++.. + .+++|+|+|+.+++.|+++++..++. |++++++|+.+     .+. +
T Consensus        30 ~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~-~  101 (256)
T 1nkv_A           30 RVLRMKPGTRILDLGSGSGEMLCTWARDH-G-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-----YVA-N  101 (256)
T ss_dssp             HHTCCCTTCEEEEETCTTCHHHHHHHHHT-C-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-----CCC-S
T ss_pred             HhcCCCCCCEEEEECCCCCHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh-----CCc-C
Confidence            33444457899999999999999999987 4 58999999999999999999988874 89999999976     222 6


Q ss_pred             CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++||.|+......+..+.        ..+++++.++|||||++++
T Consensus       102 ~~fD~V~~~~~~~~~~~~--------~~~l~~~~r~LkpgG~l~~  138 (256)
T 1nkv_A          102 EKCDVAACVGATWIAGGF--------AGAEELLAQSLKPGGIMLI  138 (256)
T ss_dssp             SCEEEEEEESCGGGTSSS--------HHHHHHHTTSEEEEEEEEE
T ss_pred             CCCCEEEECCChHhcCCH--------HHHHHHHHHHcCCCeEEEE
Confidence            889999875543333222        4999999999999999875

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.70  E-value=9.8e-17  Score=132.87  Aligned_cols=112  Identities=13%  Similarity=0.210  Sum_probs=92.1

Q ss_pred             hHHHhcCCCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      ..+.+...++.+|||||||+|.++..+++.. +. .+++|+|+|+.+++.++++++..++++++++.+|+.+     .+.
T Consensus        29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-----~~~  102 (219)
T 3dh0_A           29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEK-GKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK-----IPL  102 (219)
T ss_dssp             HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTB-----CSS
T ss_pred             HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccccc-----CCC
Confidence            3444444457899999999999999999987 55 7999999999999999999999888899999999976     333


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+++||.|+......+..+.        ..+++++.++|||||.+++
T Consensus       103 ~~~~fD~v~~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~i  141 (219)
T 3dh0_A          103 PDNTVDFIFMAFTFHELSEP--------LKFLEELKRVAKPFAYLAI  141 (219)
T ss_dssp             CSSCEEEEEEESCGGGCSSH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCeeEEEeehhhhhcCCH--------HHHHHHHHHHhCCCeEEEE
Confidence            46889999887654443322        4899999999999999875

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.70  E-value=3e-16  Score=127.77  Aligned_cols=107  Identities=16%  Similarity=0.056  Sum_probs=86.0

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+|||+|.++..++++ +. .+|+|+|+|+++++.|+++++.+++++++++++|+.+.....   .+..||.|
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~fD~i  117 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GA-ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAG---TTSPVDLV  117 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHC---CSSCCSEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhc---cCCCccEE
Confidence            35789999999999999988875 33 589999999999999999999998888999999998743221   25789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHh--ccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIID--YLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r--~LkpGG~l~~  241 (241)
                      +++.+-.+...       ....+++.+.+  +|+|||.+++
T Consensus       118 ~~~~p~~~~~~-------~~~~~l~~~~~~~~L~pgG~l~~  151 (189)
T 3p9n_A          118 LADPPYNVDSA-------DVDAILAALGTNGWTREGTVAVV  151 (189)
T ss_dssp             EECCCTTSCHH-------HHHHHHHHHHHSSSCCTTCEEEE
T ss_pred             EECCCCCcchh-------hHHHHHHHHHhcCccCCCeEEEE
Confidence            88765433111       12589999999  9999999985

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.69  E-value=1.6e-16  Score=136.29  Aligned_cols=105  Identities=21%  Similarity=0.330  Sum_probs=90.0

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +++.+|||||||+|.++..+++.+|+ .+++|+|+|+.+++.+++++...+.++++++.+|+.+     .+..+++||.|
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~fD~v  109 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS-----LPFEDSSFDHI  109 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG-----CCSCTTCEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccccc-----CCCCCCCeeEE
Confidence            35789999999999999999999888 8999999999999999999998888899999999976     33456899999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......+..+.        ..+++++.++|||||.+++
T Consensus       110 ~~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~~  140 (276)
T 3mgg_A          110 FVCFVLEHLQSP--------EEALKSLKKVLKPGGTITV  140 (276)
T ss_dssp             EEESCGGGCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEechhhhcCCH--------HHHHHHHHHHcCCCcEEEE
Confidence            887654433332        4899999999999999875

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.69  E-value=2.1e-16  Score=133.46  Aligned_cols=111  Identities=16%  Similarity=0.260  Sum_probs=90.9

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      .+.+.....++.+|||||||+|.++..+++..   .+++|+|+|+.+++.++++++..++++++++.+|+.+     .+.
T Consensus        12 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----~~~   83 (239)
T 1xxl_A           12 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES-----LPF   83 (239)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB-----CCS
T ss_pred             hHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccccc-----CCC
Confidence            34445555567899999999999999999885   3699999999999999999998888899999999976     333


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+++||.|+......+..+.        ..+++++.++|||||.+++
T Consensus        84 ~~~~fD~v~~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~  122 (239)
T 1xxl_A           84 PDDSFDIITCRYAAHHFSDV--------RKAVREVARVLKQDGRFLL  122 (239)
T ss_dssp             CTTCEEEEEEESCGGGCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             CCCcEEEEEECCchhhccCH--------HHHHHHHHHHcCCCcEEEE
Confidence            56889999877654333322        4899999999999999875

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.68  E-value=2e-16  Score=130.13  Aligned_cols=101  Identities=21%  Similarity=0.245  Sum_probs=86.0

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      .+|||||||+|.++..++++ ++ .+++|+|+|+.+++.|+++++..++. +++++++|+.+     .+..++++|.|+.
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~D~v~~  117 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ-SD-FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN-----IPIEDNYADLIVS  117 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH-SE-EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB-----CSSCTTCEEEEEE
T ss_pred             CEEEEECCCCCHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH-----CCCCcccccEEEE
Confidence            49999999999999999998 66 79999999999999999999988874 79999999976     3345688999988


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .....+..+.        ..+++++.++|||||.+++
T Consensus       118 ~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~~  146 (219)
T 3dlc_A          118 RGSVFFWEDV--------ATAFREIYRILKSGGKTYI  146 (219)
T ss_dssp             ESCGGGCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             CchHhhccCH--------HHHHHHHHHhCCCCCEEEE
Confidence            7654444332        4899999999999999875

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.68  E-value=1.7e-16  Score=134.27  Aligned_cols=103  Identities=16%  Similarity=0.100  Sum_probs=85.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|..+..+++..++ .+|+|+|+|++|++.|+++++..+++|++++++|+.+. +. ....+++||.|+
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~-~~~~~~~fD~V~  146 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETF-GQ-RKDVRESYDIVT  146 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHH-TT-CTTTTTCEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHh-cc-cccccCCccEEE
Confidence            4679999999999999999988887 89999999999999999999999988899999999762 10 011257899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......            ...+++.+.++|||||.+++
T Consensus       147 ~~~~~~------------~~~~l~~~~~~LkpgG~l~~  172 (240)
T 1xdz_A          147 ARAVAR------------LSVLSELCLPLVKKNGLFVA  172 (240)
T ss_dssp             EECCSC------------HHHHHHHHGGGEEEEEEEEE
T ss_pred             EeccCC------------HHHHHHHHHHhcCCCCEEEE
Confidence            765322            14999999999999999875

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.68  E-value=2.8e-16  Score=125.73  Aligned_cols=104  Identities=21%  Similarity=0.198  Sum_probs=86.0

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCc
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      +...++.+|||||||+|.++..+++.++. .+|+|+|+|+.+++.|+++++..+++ ++ ++.+|+.+.+    +..++.
T Consensus        21 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~----~~~~~~   94 (178)
T 3hm2_A           21 LAPKPHETLWDIGGGSGSIAIEWLRSTPQ-TTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAF----DDVPDN   94 (178)
T ss_dssp             HCCCTTEEEEEESTTTTHHHHHHHTTSSS-EEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGG----GGCCSC
T ss_pred             hcccCCCeEEEeCCCCCHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhh----hccCCC
Confidence            33344679999999999999999999887 89999999999999999999988886 89 8889986532    222378


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||.|++.....+            ..+++++.++|||||.+++
T Consensus        95 ~D~i~~~~~~~~------------~~~l~~~~~~L~~gG~l~~  125 (178)
T 3hm2_A           95 PDVIFIGGGLTA------------PGVFAAAWKRLPVGGRLVA  125 (178)
T ss_dssp             CSEEEECC-TTC------------TTHHHHHHHTCCTTCEEEE
T ss_pred             CCEEEECCcccH------------HHHHHHHHHhcCCCCEEEE
Confidence            999988776543            2899999999999999875

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.68  E-value=3.5e-16  Score=137.08  Aligned_cols=100  Identities=12%  Similarity=0.123  Sum_probs=82.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||||||+|.++..++.+.++ ++|+|||+|++|++.|++++++.++.+++++++|+.+     ++  +++||.|
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~g-a~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-----l~--d~~FDvV  192 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYG-MRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-----ID--GLEFDVL  192 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTC-CEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-----GG--GCCCSEE
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-----CC--CCCcCEE
Confidence            45789999999999877554445567 8999999999999999999999888889999999986     22  5789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++....+.   .        ..+++++.++|||||+|++
T Consensus       193 ~~~a~~~d---~--------~~~l~el~r~LkPGG~Lvv  220 (298)
T 3fpf_A          193 MVAALAEP---K--------RRVFRNIHRYVDTETRIIY  220 (298)
T ss_dssp             EECTTCSC---H--------HHHHHHHHHHCCTTCEEEE
T ss_pred             EECCCccC---H--------HHHHHHHHHHcCCCcEEEE
Confidence            87543221   1        4999999999999999975

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.68  E-value=4e-16  Score=131.56  Aligned_cols=101  Identities=15%  Similarity=0.157  Sum_probs=87.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHH-hhccCCCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFK-QLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~-~~~~~~~~~~d~V  202 (241)
                      +.+|||||||+|..+..+++..++ .+|+|+|+++++++.|+++++..++. +++++.+|+.+.++ ..    +++||.|
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~----~~~fD~V  146 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDD-IHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN----DKVYDMI  146 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTT-CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT----TSCEEEE
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc----cCCccEE
Confidence            579999999999999999997777 89999999999999999999998885 89999999987544 32    5789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++......           ...+++.+.++|||||.|++
T Consensus       147 ~~~~~~~~-----------~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          147 FIDAAKAQ-----------SKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             EEETTSSS-----------HHHHHHHHGGGEEEEEEEEE
T ss_pred             EEcCcHHH-----------HHHHHHHHHHhcCCCeEEEE
Confidence            88754332           25899999999999999875

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.68  E-value=3.1e-16  Score=136.62  Aligned_cols=112  Identities=17%  Similarity=0.264  Sum_probs=90.1

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHh--CCCCEEEEEccccchHHhh
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQEL--ALSNIHFLFANASVSFKQL  191 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~--~l~ni~~~~~D~~~~~~~~  191 (241)
                      ++...+...++.+|||||||+|.++..+++.+ +. .+|+|+|+|+.+++.|+++++..  ...+++++++|+.+.    
T Consensus        27 ~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~----  101 (299)
T 3g5t_A           27 KMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPF-EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF----  101 (299)
T ss_dssp             HHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCC-SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC----
T ss_pred             HHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCC-CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhC----
Confidence            34443433457899999999999999999986 66 89999999999999999998876  246899999999862    


Q ss_pred             ccCCC------CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          192 VSSYP------GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       192 ~~~~~------~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       +..+      ++||+|+......|. +.        ..+++++.++|||||.|++
T Consensus       102 -~~~~~~~~~~~~fD~V~~~~~l~~~-~~--------~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          102 -KFLGADSVDKQKIDMITAVECAHWF-DF--------EKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             -GGGCTTTTTSSCEEEEEEESCGGGS-CH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             -CccccccccCCCeeEEeHhhHHHHh-CH--------HHHHHHHHHhcCCCcEEEE
Confidence             2123      789999887765554 32        4999999999999999875

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.68  E-value=4.2e-16  Score=132.10  Aligned_cols=102  Identities=14%  Similarity=0.121  Sum_probs=86.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.++..+++..+.  +|+|+|+|+.+++.|+++++..++.+ ++++++|+.+     .+..+++||.|
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~fD~v  118 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDN-----LPFQNEELDLI  118 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-----CSSCTTCEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh-----CCCCCCCEEEE
Confidence            4679999999999999999999864  89999999999999999999988864 9999999975     33356899999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......+. +.        ..+++++.++|||||.+++
T Consensus       119 ~~~~~l~~~-~~--------~~~l~~~~~~L~pgG~l~~  148 (257)
T 3f4k_A          119 WSEGAIYNI-GF--------ERGMNEWSKYLKKGGFIAV  148 (257)
T ss_dssp             EEESCSCCC-CH--------HHHHHHHHTTEEEEEEEEE
T ss_pred             EecChHhhc-CH--------HHHHHHHHHHcCCCcEEEE
Confidence            877654443 11        4899999999999999875

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.68  E-value=4e-16  Score=129.97  Aligned_cols=105  Identities=20%  Similarity=0.230  Sum_probs=87.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCC-CCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p-~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +.+|||||||+|..+..+++..+ + ++|+|+|+++++++.|+++++..++. +++++.+|+.+.++.+.....+.||.|
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v  137 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSG-GRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI  137 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSS-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence            57999999999999999999987 5 79999999999999999999998886 499999999876554432222679998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..+.++           ...+++++.++|||||.+++
T Consensus       138 ~~d~~~~~-----------~~~~l~~~~~~L~pgG~lv~  165 (223)
T 3duw_A          138 FIDADKQN-----------NPAYFEWALKLSRPGTVIIG  165 (223)
T ss_dssp             EECSCGGG-----------HHHHHHHHHHTCCTTCEEEE
T ss_pred             EEcCCcHH-----------HHHHHHHHHHhcCCCcEEEE
Confidence            87654322           14899999999999998874

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.68  E-value=5.2e-17  Score=134.44  Aligned_cols=112  Identities=11%  Similarity=0.032  Sum_probs=82.0

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh------------CCCCEEEEEc
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL------------ALSNIHFLFA  182 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~------------~l~ni~~~~~  182 (241)
                      +|......+++.+|||+|||+|..+..|+++  + .+|+|||+|+.|++.|+++.+..            ...+++++++
T Consensus        13 ~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~--g-~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   89 (203)
T 1pjz_A           13 QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ--G-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   89 (203)
T ss_dssp             HHHHHHCCCTTCEEEETTTCCSHHHHHHHHH--C-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHhcccCCCCEEEEeCCCCcHhHHHHHHC--C-CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence            5555554445789999999999999999998  4 58999999999999999875421            1357999999


Q ss_pred             cccchHHhhccCCC-CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          183 NASVSFKQLVSSYP-GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       183 D~~~~~~~~~~~~~-~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |+.+.     +..+ ++||.|+......+....      ....++++++++|||||+++
T Consensus        90 d~~~l-----~~~~~~~fD~v~~~~~l~~l~~~------~~~~~l~~~~r~LkpgG~~~  137 (203)
T 1pjz_A           90 DFFAL-----TARDIGHCAAFYDRAAMIALPAD------MRERYVQHLEALMPQACSGL  137 (203)
T ss_dssp             CCSSS-----THHHHHSEEEEEEESCGGGSCHH------HHHHHHHHHHHHSCSEEEEE
T ss_pred             ccccC-----CcccCCCEEEEEECcchhhCCHH------HHHHHHHHHHHHcCCCcEEE
Confidence            99862     1112 679998765433222110      11479999999999999843

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.67  E-value=1.3e-16  Score=139.22  Aligned_cols=115  Identities=19%  Similarity=0.236  Sum_probs=85.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-----------------------------
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-----------------------------  174 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-----------------------------  174 (241)
                      ++.+|||||||+|.++..+++.++. .+|+|||+|+.|++.|+++++..+.                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~-~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCC-SEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            3689999999999999999999987 7999999999999999998765431                             


Q ss_pred             -----------------------------CCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHH
Q 026219          175 -----------------------------SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPL  225 (241)
Q Consensus       175 -----------------------------~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~l  225 (241)
                                                   .|++|+++|+....+......+++||+|+......|.+-..  ...-...+
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~--~~~~~~~~  202 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNW--GDEGLKRM  202 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHH--HHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcC--CHHHHHHH
Confidence                                         37999999997532222333468899998876554432000  00012589


Q ss_pred             HHHHHhccccCCEEEc
Q 026219          226 VDSIIDYLMPGGKVYF  241 (241)
Q Consensus       226 l~~l~r~LkpGG~l~~  241 (241)
                      +++++++|||||.|+|
T Consensus       203 l~~~~~~LkpGG~lil  218 (292)
T 3g07_A          203 FRRIYRHLRPGGILVL  218 (292)
T ss_dssp             HHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHhCCCcEEEE
Confidence            9999999999999985

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.67  E-value=4e-17  Score=140.59  Aligned_cols=108  Identities=15%  Similarity=0.125  Sum_probs=84.9

Q ss_pred             CCChhhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHH
Q 026219          110 PAPIPDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFK  189 (241)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~  189 (241)
                      |.++.+|...... .+.+|||||||+|..+..|++.+   .+|+|||+|+.|++.|++      .++++++++|+.+   
T Consensus        26 p~~l~~~l~~~~~-~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~---   92 (257)
T 4hg2_A           26 PRALFRWLGEVAP-ARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR------HPRVTYAVAPAED---   92 (257)
T ss_dssp             CHHHHHHHHHHSS-CSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC------CTTEEEEECCTTC---
T ss_pred             HHHHHHHHHHhcC-CCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh------cCCceeehhhhhh---
Confidence            3334455554443 46789999999999999999875   469999999999988743      3689999999986   


Q ss_pred             hhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          190 QLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       190 ~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                        ++.++++||+|+....-.|++.         +.+++++.|+|||||.|.+
T Consensus        93 --~~~~~~sfD~v~~~~~~h~~~~---------~~~~~e~~rvLkpgG~l~~  133 (257)
T 4hg2_A           93 --TGLPPASVDVAIAAQAMHWFDL---------DRFWAELRRVARPGAVFAA  133 (257)
T ss_dssp             --CCCCSSCEEEEEECSCCTTCCH---------HHHHHHHHHHEEEEEEEEE
T ss_pred             --hcccCCcccEEEEeeehhHhhH---------HHHHHHHHHHcCCCCEEEE
Confidence              4556899999987665555532         4899999999999999864

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.67  E-value=2.6e-16  Score=130.62  Aligned_cols=106  Identities=11%  Similarity=0.161  Sum_probs=84.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-----CEEEEEccccchHHhhccCCCCc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-----NIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-----ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++.+|||||||+|.++..++++++. .+++|+|+|+.+++.|+++++..++.     +++++.+|+..     .+..+++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~  102 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY-----QDKRFHG  102 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS-----CCGGGCS
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc-----ccccCCC
Confidence            4689999999999999999998876 79999999999999999998776664     79999999854     2223478


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||+|+......+..+.      ....+++++.++|||||.+++
T Consensus       103 fD~v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~li~  139 (217)
T 3jwh_A          103 YDAATVIEVIEHLDLS------RLGAFERVLFEFAQPKIVIVT  139 (217)
T ss_dssp             CSEEEEESCGGGCCHH------HHHHHHHHHHTTTCCSEEEEE
T ss_pred             cCEEeeHHHHHcCCHH------HHHHHHHHHHHHcCCCEEEEE
Confidence            9999876644333221      114899999999999997763

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.67  E-value=3.2e-16  Score=134.14  Aligned_cols=103  Identities=18%  Similarity=0.172  Sum_probs=87.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .+.+|||||||+|..++.++..+|+ .+|+|+|+|+++++.|++++++.++.|++++++|+.+...  .+..+++||.|+
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~--~~~~~~~fD~I~  156 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAR--EAGHREAYARAV  156 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTT--STTTTTCEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhc--ccccCCCceEEE
Confidence            4689999999999999999999988 8999999999999999999999999899999999976211  001247899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .....++            ..+++.+.++|||||++++
T Consensus       157 s~a~~~~------------~~ll~~~~~~LkpgG~l~~  182 (249)
T 3g89_A          157 ARAVAPL------------CVLSELLLPFLEVGGAAVA  182 (249)
T ss_dssp             EESSCCH------------HHHHHHHGGGEEEEEEEEE
T ss_pred             ECCcCCH------------HHHHHHHHHHcCCCeEEEE
Confidence            7654332            4899999999999998874

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.67  E-value=2.8e-16  Score=132.13  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=85.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +.+|||||||+|..+..+++..+..++|+++|+|+++++.|++++++.++.  +++++.+|+.+.++..   .+++||.|
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~---~~~~fD~V  133 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL---ANDSYQLV  133 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS---CTTCEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh---cCCCcCeE
Confidence            458999999999999999998763389999999999999999999998886  7999999998754332   25789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++......           +..+++++.++|||||.|++
T Consensus       134 ~~d~~~~~-----------~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          134 FGQVSPMD-----------LKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             EECCCTTT-----------HHHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCcHHH-----------HHHHHHHHHHHcCCCcEEEE
Confidence            87653221           14799999999999999975

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.67  E-value=8e-16  Score=131.65  Aligned_cols=107  Identities=21%  Similarity=0.276  Sum_probs=88.5

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCc
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ....++.+|||||||+|.++..+++.. + .+|+|+|+|+.+++.++++++..++. +++++.+|+.+     .+.++++
T Consensus        57 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~  129 (273)
T 3bus_A           57 LDVRSGDRVLDVGCGIGKPAVRLATAR-D-VRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD-----LPFEDAS  129 (273)
T ss_dssp             SCCCTTCEEEEESCTTSHHHHHHHHHS-C-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCSCTTC
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc-----CCCCCCC
Confidence            333457899999999999999999986 4 68999999999999999999888874 79999999976     3334688


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||.|+......+..+.        ..+++++.++|||||.++|
T Consensus       130 fD~v~~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~i  164 (273)
T 3bus_A          130 FDAVWALESLHHMPDR--------GRALREMARVLRPGGTVAI  164 (273)
T ss_dssp             EEEEEEESCTTTSSCH--------HHHHHHHHTTEEEEEEEEE
T ss_pred             ccEEEEechhhhCCCH--------HHHHHHHHHHcCCCeEEEE
Confidence            9999877654444332        4999999999999999875

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.67  E-value=4.2e-16  Score=133.38  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=86.5

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      +++.+|||||||+|.++..+++. +. .+|+|+|+|+.+++.|+++++..+++ +++++.+|+.+     .+..+++||.
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~fD~  117 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGH-VT-GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD-----LPFRNEELDL  117 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTT-CS-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCCCTTCEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh-----CCCCCCCEEE
Confidence            35789999999999999999998 55 69999999999999999999988884 59999999976     3334688999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+......+. +.        ..+++++.++|||||.+++
T Consensus       118 i~~~~~~~~~-~~--------~~~l~~~~~~LkpgG~l~~  148 (267)
T 3kkz_A          118 IWSEGAIYNI-GF--------ERGLNEWRKYLKKGGYLAV  148 (267)
T ss_dssp             EEESSCGGGT-CH--------HHHHHHHGGGEEEEEEEEE
T ss_pred             EEEcCCceec-CH--------HHHHHHHHHHcCCCCEEEE
Confidence            9876554333 11        4899999999999999875

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.67  E-value=1e-15  Score=124.44  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=87.2

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      .+.+...++.+|||||||+|.++..+++.  + .+++|+|+|+.+++.++++++..++++++++.+|+.+     .+. +
T Consensus        25 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-----~~~-~   95 (199)
T 2xvm_A           25 LEAVKVVKPGKTLDLGCGNGRNSLYLAAN--G-YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN-----LTF-D   95 (199)
T ss_dssp             HHHTTTSCSCEEEEETCTTSHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG-----CCC-C
T ss_pred             HHHhhccCCCeEEEEcCCCCHHHHHHHHC--C-CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh-----CCC-C
Confidence            33333334679999999999999999987  4 6899999999999999999988888789999999976     232 6


Q ss_pred             CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++|.|+......+...      .....+++++.++|||||.+++
T Consensus        96 ~~~D~v~~~~~l~~~~~------~~~~~~l~~~~~~L~~gG~l~~  134 (199)
T 2xvm_A           96 RQYDFILSTVVLMFLEA------KTIPGLIANMQRCTKPGGYNLI  134 (199)
T ss_dssp             CCEEEEEEESCGGGSCG------GGHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCceEEEEcchhhhCCH------HHHHHHHHHHHHhcCCCeEEEE
Confidence            78999987764433221      0125899999999999999764

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.66  E-value=3e-16  Score=128.18  Aligned_cols=113  Identities=17%  Similarity=0.206  Sum_probs=86.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+|||+|||+|.++..++++. +. ++|+|+|+|+++++.|+++++..++ ++++++++|+.+..    ...++.||.
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~   96 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD----KYIDCPVKA   96 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG----GTCCSCEEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh----hhccCCceE
Confidence            36899999999999999999986 45 6999999999999999999999887 68999999997631    124578999


Q ss_pred             EEEeCCC-CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPD-PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~-~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+.+.+. |...............+++++.++|||||.+++
T Consensus        97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~  137 (197)
T 3eey_A           97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITV  137 (197)
T ss_dssp             EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEE
Confidence            9877533 111000000111224799999999999999875

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.66  E-value=6.5e-16  Score=131.71  Aligned_cols=104  Identities=22%  Similarity=0.254  Sum_probs=86.1

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +.+|||||||+|..+..+++..++.++|+|+|+|+++++.|++++++.++. +++++.+|+.+.++...  .++.||.|+
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~--~~~~fD~V~  141 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG--ECPAFDLIF  141 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC--SCCCCSEEE
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC--CCCCeEEEE
Confidence            579999999999999999999872289999999999999999999998885 79999999987544321  135899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +....+.           ...+++++.++|||||.|++
T Consensus       142 ~d~~~~~-----------~~~~l~~~~~~LkpGG~lv~  168 (248)
T 3tfw_A          142 IDADKPN-----------NPHYLRWALRYSRPGTLIIG  168 (248)
T ss_dssp             ECSCGGG-----------HHHHHHHHHHTCCTTCEEEE
T ss_pred             ECCchHH-----------HHHHHHHHHHhcCCCeEEEE
Confidence            7653221           14899999999999999875

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.66  E-value=1.1e-16  Score=135.63  Aligned_cols=110  Identities=11%  Similarity=0.026  Sum_probs=82.8

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +++.+|||||||+|..+..+++..+.  +++|||+|+++++.|+++.+..+ .+++++.+|+.+...   ..++++||.|
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~--~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~---~~~~~~FD~i  132 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP---TLPDGHFDGI  132 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEE--EEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG---GSCTTCEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCc--EEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhcc---cccccCCceE
Confidence            45789999999999999999887654  79999999999999999887655 478999999876332   2357889988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..-..   ......+....+.++++++|+|||||+|.|
T Consensus       133 ~~D~~~---~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f  168 (236)
T 3orh_A          133 LYDTYP---LSEETWHTHQFNFIKNHAFRLLKPGGVLTY  168 (236)
T ss_dssp             EECCCC---CBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             EEeeee---cccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence            653211   111111222335899999999999999865

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.65  E-value=4.6e-16  Score=129.10  Aligned_cols=105  Identities=12%  Similarity=0.209  Sum_probs=84.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-----CEEEEEccccchHHhhccCCCCc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-----NIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-----ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++.+|||||||+|.++..+++..+. .+++|+|+|+.+++.|++++...++.     +++++.+|+..     .+..+++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~  102 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY-----RDKRFSG  102 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS-----CCGGGTT
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc-----cccccCC
Confidence            4689999999999999999998876 79999999999999999998766654     79999999954     2223578


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ||.|+......+..+.      ....+++++.++|||||.++
T Consensus       103 fD~V~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~i  138 (219)
T 3jwg_A          103 YDAATVIEVIEHLDEN------RLQAFEKVLFEFTRPQTVIV  138 (219)
T ss_dssp             CSEEEEESCGGGCCHH------HHHHHHHHHHTTTCCSEEEE
T ss_pred             CCEEEEHHHHHhCCHH------HHHHHHHHHHHhhCCCEEEE
Confidence            9999876544333211      11489999999999999765

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.65  E-value=9.5e-16  Score=133.02  Aligned_cols=106  Identities=18%  Similarity=0.130  Sum_probs=87.7

Q ss_pred             cCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcE
Q 026219          121 KNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       121 ~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      ...++.+|||||||+|.++..+++.+ + .+|+|+|+|+.+++.|+++.+..++ .+++++.+|+.+     .+.++++|
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~f  151 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKF-G-VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-----IPCEDNSY  151 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH-C-CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-----CSSCTTCE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc-----CCCCCCCE
Confidence            33457899999999999999999986 3 5899999999999999999988887 479999999976     34456889


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|+......+..+.        ..+++++.++|||||.+++
T Consensus       152 D~v~~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~  185 (297)
T 2o57_A          152 DFIWSQDAFLHSPDK--------LKVFQECARVLKPRGVMAI  185 (297)
T ss_dssp             EEEEEESCGGGCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             eEEEecchhhhcCCH--------HHHHHHHHHHcCCCeEEEE
Confidence            999877654333322        4999999999999999875

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.65  E-value=2.2e-15  Score=124.87  Aligned_cols=101  Identities=21%  Similarity=0.232  Sum_probs=83.3

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCc
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      +...++.+|||||||+|.++..+++.  + .+|+|+|+|+++++.|+++++..+++ +++++.+|+.+.++     ....
T Consensus        51 l~~~~~~~vLDlGcG~G~~~~~la~~--~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-----~~~~  122 (204)
T 3njr_A           51 LAPRRGELLWDIGGGSGSVSVEWCLA--G-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA-----DLPL  122 (204)
T ss_dssp             HCCCTTCEEEEETCTTCHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT-----TSCC
T ss_pred             cCCCCCCEEEEecCCCCHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc-----cCCC
Confidence            33345789999999999999999998  5 68999999999999999999999987 89999999986321     1246


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|++.....            .+ +++++.++|||||++++
T Consensus       123 ~D~v~~~~~~~------------~~-~l~~~~~~LkpgG~lv~  152 (204)
T 3njr_A          123 PEAVFIGGGGS------------QA-LYDRLWEWLAPGTRIVA  152 (204)
T ss_dssp             CSEEEECSCCC------------HH-HHHHHHHHSCTTCEEEE
T ss_pred             CCEEEECCccc------------HH-HHHHHHHhcCCCcEEEE
Confidence            89888665321            14 99999999999999875

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.65  E-value=1.1e-15  Score=127.47  Aligned_cols=103  Identities=20%  Similarity=0.157  Sum_probs=80.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++..+. ++|+|+|+|+.|++.+.+++++.  .|+.++.+|+.+.. .. ...+++||.|+
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~~-~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~-~~-~~~~~~fD~V~  131 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPW-KY-SGIVEKVDLIY  131 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGG-GT-TTTCCCEEEEE
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCch-hh-cccccceeEEE
Confidence            4679999999999999999998875 79999999999988777766543  58999999987521 11 11247899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .....+.  +.        ..++++++++|||||.+++
T Consensus       132 ~~~~~~~--~~--------~~~l~~~~r~LkpgG~l~i  159 (210)
T 1nt2_A          132 QDIAQKN--QI--------EILKANAEFFLKEKGEVVI  159 (210)
T ss_dssp             ECCCSTT--HH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EeccChh--HH--------HHHHHHHHHHhCCCCEEEE
Confidence            8764431  11        2568999999999999875

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.65  E-value=1.6e-16  Score=133.96  Aligned_cols=108  Identities=12%  Similarity=0.052  Sum_probs=81.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++..+  .+|+|+|+|+.|++.|+++.+..+ .+++++++|+.+..+   +..+++||.|+
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~---~~~~~~fD~V~  133 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP---TLPDGHFDGIL  133 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG---GSCTTCEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhc---ccCCCceEEEE
Confidence            467999999999999999977533  489999999999999999887655 579999999976321   33468999998


Q ss_pred             E-eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 I-LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~-~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      . .+.. .....+   ....+.++++++++|||||++++
T Consensus       134 ~d~~~~-~~~~~~---~~~~~~~l~~~~r~LkpgG~l~~  168 (236)
T 1zx0_A          134 YDTYPL-SEETWH---THQFNFIKNHAFRLLKPGGVLTY  168 (236)
T ss_dssp             ECCCCC-BGGGTT---THHHHHHHHTHHHHEEEEEEEEE
T ss_pred             ECCccc-chhhhh---hhhHHHHHHHHHHhcCCCeEEEE
Confidence            8 4432 111110   11124789999999999999874

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.64  E-value=9.6e-16  Score=125.95  Aligned_cols=98  Identities=20%  Similarity=0.134  Sum_probs=84.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||||||+|.++..+++.+|+ .+++|+|+|+.+++.++++++..++++++++.+|+.+.     . +++.||.|+.
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~D~i~~  138 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPE-AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF-----P-SEPPFDGVIS  138 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS-----C-CCSCEEEEEC
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhC-----C-ccCCcCEEEE
Confidence            579999999999999999999887 89999999999999999999998888899999999762     1 3478998876


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ....+.            ..+++.+.++|+|||.+++
T Consensus       139 ~~~~~~------------~~~l~~~~~~L~~gG~l~~  163 (207)
T 1jsx_A          139 RAFASL------------NDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             SCSSSH------------HHHHHHHTTSEEEEEEEEE
T ss_pred             eccCCH------------HHHHHHHHHhcCCCcEEEE
Confidence            532221            4899999999999999875

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.64  E-value=2e-15  Score=131.62  Aligned_cols=109  Identities=13%  Similarity=0.128  Sum_probs=85.4

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||||||+|.++..+++.++  .+|+|+|+|+++++.|++++...++. +++++.+|+.+     +   +++||.
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~---~~~fD~  140 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-----F---DEPVDR  140 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-----C---CCCCSE
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH-----c---CCCccE
Confidence            4567999999999999999999865  48999999999999999999988886 79999999975     2   688999


Q ss_pred             EEEeCCCCchhhhh-hhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKH-HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~-~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+......+..++. .........+++++.++|||||.++|
T Consensus       141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i  181 (302)
T 3hem_A          141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLL  181 (302)
T ss_dssp             EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEE
T ss_pred             EEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence            88764332221110 00001225999999999999999975

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.64  E-value=8.6e-16  Score=132.64  Aligned_cols=103  Identities=18%  Similarity=0.303  Sum_probs=85.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.++..+++.  + .+|+|+|+|+.+++.|+++++..++ .+++++.+|+.+..    ...+++||.|
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~--~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~v  140 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER--G-HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA----SHLETPVDLI  140 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG----GGCSSCEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh----hhcCCCceEE
Confidence            3679999999999999999998  4 6899999999999999999988887 58999999998631    1246899999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......+..+.        ..+++++.++|||||.++|
T Consensus       141 ~~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~  171 (285)
T 4htf_A          141 LFHAVLEWVADP--------RSVLQTLWSVLRPGGVLSL  171 (285)
T ss_dssp             EEESCGGGCSCH--------HHHHHHHHHTEEEEEEEEE
T ss_pred             EECchhhcccCH--------HHHHHHHHHHcCCCeEEEE
Confidence            887654443332        4899999999999999975

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.64  E-value=7.4e-16  Score=128.95  Aligned_cols=104  Identities=16%  Similarity=0.284  Sum_probs=84.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||||||+|.++..+++.+|+ .+++|+|+|+.+++.|++++...+  +++++.+|+.+     .+ +++++|.|
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~-----~~-~~~~fD~v  113 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSK-----YD-FEEKYDMV  113 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTT-----CC-CCSCEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhc-----cC-CCCCceEE
Confidence            34689999999999999999999987 899999999999999998875443  89999999976     22 23789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......+..+..      ...+++++.++|||||.+++
T Consensus       114 ~~~~~l~~~~~~~------~~~~l~~~~~~LkpgG~l~~  146 (234)
T 3dtn_A          114 VSALSIHHLEDED------KKELYKRSYSILKESGIFIN  146 (234)
T ss_dssp             EEESCGGGSCHHH------HHHHHHHHHHHEEEEEEEEE
T ss_pred             EEeCccccCCHHH------HHHHHHHHHHhcCCCcEEEE
Confidence            8876544332211      13699999999999999875

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.64  E-value=3.3e-16  Score=130.07  Aligned_cols=109  Identities=17%  Similarity=0.245  Sum_probs=80.1

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHH----HHhCCCCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWV----QELALSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~----~~~~l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      .++.+|||||||+|.++..+++.+|+ .+|+|+|+|+.|++.+.+++    +..+++|++++++|+.+     ++..++.
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----l~~~~~~   99 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPS-RLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER-----LPPLSGV   99 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTT-EEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT-----CCSCCCE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh-----CCCCCCC
Confidence            34689999999999999999999988 89999999999888644333    23566789999999986     3334555


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       |.|.+.++.  .... ..+..-...+++++.++|||||.+++
T Consensus       100 -d~v~~~~~~--~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~  138 (218)
T 3mq2_A          100 -GELHVLMPW--GSLL-RGVLGSSPEMLRGMAAVCRPGASFLV  138 (218)
T ss_dssp             -EEEEEESCC--HHHH-HHHHTSSSHHHHHHHHTEEEEEEEEE
T ss_pred             -CEEEEEccc--hhhh-hhhhccHHHHHHHHHHHcCCCcEEEE
Confidence             777666542  1110 00000114899999999999999875

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.64  E-value=4.4e-16  Score=132.12  Aligned_cols=102  Identities=19%  Similarity=0.216  Sum_probs=83.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||||||+|.++..+++.+ + .+|+|+|+|+.+++.|+++....  .+++++.+|+.+     .+.++++||.|
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~-----~~~~~~~fD~v  124 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKY-G-AHTHGIDICSNIVNMANERVSGN--NKIIFEANDILT-----KEFPENNFDLI  124 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-C-CEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTT-----CCCCTTCEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECcccc-----CCCCCCcEEEE
Confidence            456799999999999999999986 4 68999999999999998866433  689999999976     34357899999


Q ss_pred             EEeCCCCch--hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHF--KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~--~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......+.  .+.        ..+++++.++|||||.+++
T Consensus       125 ~~~~~l~~~~~~~~--------~~~l~~~~~~L~pgG~l~~  157 (266)
T 3ujc_A          125 YSRDAILALSLENK--------NKLFQKCYKWLKPTGTLLI  157 (266)
T ss_dssp             EEESCGGGSCHHHH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             eHHHHHHhcChHHH--------HHHHHHHHHHcCCCCEEEE
Confidence            887654443  332        4999999999999999875

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.64  E-value=2.3e-15  Score=123.21  Aligned_cols=98  Identities=15%  Similarity=0.139  Sum_probs=80.9

Q ss_pred             cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeC
Q 026219          127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC  206 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~  206 (241)
                      +|||||||+|.++..+++.  + .+++|+|+|+.+++.|+++....+. +++++.+|+.+     .+..++.||.|+..+
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~-----~~~~~~~fD~v~~~~  102 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--G-YEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLAD-----FDIVADAWEGIVSIF  102 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--T-CEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTT-----BSCCTTTCSEEEEEC
T ss_pred             CEEEECCCCCHhHHHHHhC--C-CeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhh-----cCCCcCCccEEEEEh
Confidence            9999999999999999986  4 5899999999999999999988776 89999999976     233467899988765


Q ss_pred             CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          207 PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       207 ~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+.        ..+++++.++|||||.+++
T Consensus       103 ~~~~~~~~--------~~~l~~~~~~L~pgG~l~~  129 (202)
T 2kw5_A          103 CHLPSSLR--------QQLYPKVYQGLKPGGVFIL  129 (202)
T ss_dssp             CCCCHHHH--------HHHHHHHHTTCCSSEEEEE
T ss_pred             hcCCHHHH--------HHHHHHHHHhcCCCcEEEE
Confidence            32211222        4899999999999999875

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.64  E-value=1.4e-15  Score=126.69  Aligned_cols=106  Identities=18%  Similarity=0.239  Sum_probs=86.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC-CCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS-YPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~-~~~~~d~V  202 (241)
                      +.+|||||||+|..+..+++..+...+|+|+|+++++++.|+++++..++. +++++++|+.+.++..... ..++||.|
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            579999999999999999998873289999999999999999999998886 4999999998755443211 11689998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..+...           ...+++++.++|||||.|++
T Consensus       145 ~~~~~~~~-----------~~~~l~~~~~~L~pgG~lv~  172 (225)
T 3tr6_A          145 YIDADKAN-----------TDLYYEESLKLLREGGLIAV  172 (225)
T ss_dssp             EECSCGGG-----------HHHHHHHHHHHEEEEEEEEE
T ss_pred             EECCCHHH-----------HHHHHHHHHHhcCCCcEEEE
Confidence            86653221           14899999999999999974

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=1e-15  Score=129.74  Aligned_cols=99  Identities=17%  Similarity=0.161  Sum_probs=83.5

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||||||+|.++..+++.+|+ .+++|+|+|+.|++.++++     .++++++.+|+.+     .+ ++++||.|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~-----~~-~~~~fD~v   99 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGV-NVITGIDSDDDMLEKAADR-----LPNTNFGKADLAT-----WK-PAQKADLL   99 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCT-TSEEEEESCHHHHHHHHHH-----STTSEEEECCTTT-----CC-CSSCEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHh-----CCCcEEEECChhh-----cC-ccCCcCEE
Confidence            34679999999999999999999877 7899999999999999876     3589999999976     23 46889999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......|..+.        ..+++++.++|||||.+++
T Consensus       100 ~~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~~  130 (259)
T 2p35_A          100 YANAVFQWVPDH--------LAVLSQLMDQLESGGVLAV  130 (259)
T ss_dssp             EEESCGGGSTTH--------HHHHHHHGGGEEEEEEEEE
T ss_pred             EEeCchhhCCCH--------HHHHHHHHHhcCCCeEEEE
Confidence            887765554333        4899999999999999875

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.63  E-value=2e-15  Score=128.24  Aligned_cols=102  Identities=22%  Similarity=0.293  Sum_probs=87.8

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHH-CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCC
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~-~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~  197 (241)
                      ....++.+|||+|||+|.++..+++. .|. .+++|+|+|+++++.|+++++..++++ ++++.+|+.+.      .+++
T Consensus        89 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~  161 (255)
T 3mb5_A           89 AGISPGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG------IEEE  161 (255)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC------CCCC
T ss_pred             hCCCCCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc------cCCC
Confidence            33345789999999999999999998 667 899999999999999999999999876 99999999752      2357


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++|.|+++.++++             .+++++.++|+|||.+++
T Consensus       162 ~~D~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~  192 (255)
T 3mb5_A          162 NVDHVILDLPQPE-------------RVVEHAAKALKPGGFFVA  192 (255)
T ss_dssp             SEEEEEECSSCGG-------------GGHHHHHHHEEEEEEEEE
T ss_pred             CcCEEEECCCCHH-------------HHHHHHHHHcCCCCEEEE
Confidence            8999998877652             789999999999999875

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.63  E-value=1.2e-15  Score=129.30  Aligned_cols=101  Identities=14%  Similarity=0.194  Sum_probs=83.0

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||||||+|.++..+++..+.  +|+|+|+|+.+++.|+++..   ..+++++.+|+.+     .+..+++||+|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~-----~~~~~~~fD~v  112 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIED-----IAIEPDAYNVV  112 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGG-----CCCCTTCEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhh-----CCCCCCCeEEE
Confidence            35789999999999999999998543  79999999999999988754   3589999999975     33346899999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......+..+.        ..+++++.++|||||.+++
T Consensus       113 ~~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~  143 (253)
T 3g5l_A          113 LSSLALHYIASF--------DDICKKVYINLKSSGSFIF  143 (253)
T ss_dssp             EEESCGGGCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEchhhhhhhhH--------HHHHHHHHHHcCCCcEEEE
Confidence            887654443332        4999999999999999975

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.63  E-value=1.7e-15  Score=132.97  Aligned_cols=103  Identities=16%  Similarity=0.126  Sum_probs=86.8

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||||||+|.++..+++++ + .+|+|+|+|+.+++.|+++++..++. +++++.+|+.+     .+..+++||.
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~fD~  188 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRF-G-SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLD-----TPFDKGAVTA  188 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-C-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-----CCCCTTCEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhc-----CCCCCCCEeE
Confidence            346899999999999999999985 3 58999999999999999999998885 79999999976     3334689999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+......+..         ...+++++.++|||||++++
T Consensus       189 V~~~~~l~~~~---------~~~~l~~~~~~LkpgG~l~~  219 (312)
T 3vc1_A          189 SWNNESTMYVD---------LHDLFSEHSRFLKVGGRYVT  219 (312)
T ss_dssp             EEEESCGGGSC---------HHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCchhhCC---------HHHHHHHHHHHcCCCcEEEE
Confidence            98765543331         25999999999999999875

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.63  E-value=6.2e-16  Score=132.68  Aligned_cols=103  Identities=12%  Similarity=-0.022  Sum_probs=77.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH-----------------hCCCCEEEEEccccc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-----------------LALSNIHFLFANASV  186 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~-----------------~~l~ni~~~~~D~~~  186 (241)
                      ++.+|||+|||+|..+..|+++  + .+|+|||+|+.|++.|+++...                 ....+++++++|+.+
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~--G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR--G-HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--T-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC--C-CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            4689999999999999999997  4 5899999999999999775421                 012579999999986


Q ss_pred             hHHhhccCC-CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          187 SFKQLVSSY-PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       187 ~~~~~~~~~-~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .     +.. .++||.|+......+....      ....+++++.++|||||+++
T Consensus       145 l-----~~~~~~~FD~V~~~~~l~~l~~~------~~~~~l~~~~~~LkpGG~l~  188 (252)
T 2gb4_A          145 L-----PRANIGKFDRIWDRGALVAINPG------DHDRYADIILSLLRKEFQYL  188 (252)
T ss_dssp             G-----GGGCCCCEEEEEESSSTTTSCGG------GHHHHHHHHHHTEEEEEEEE
T ss_pred             C-----CcccCCCEEEEEEhhhhhhCCHH------HHHHHHHHHHHHcCCCeEEE
Confidence            2     212 3789998754322111100      11489999999999999985

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.63  E-value=2.1e-15  Score=125.20  Aligned_cols=100  Identities=18%  Similarity=0.295  Sum_probs=82.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||||||+|.++..+++..+   +++|+|+|+.+++.|+++.+..+ .+++++.+|+.+     .+..++++|.|+.
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~-----~~~~~~~~D~v~~  109 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARK-----LSFEDKTFDYVIF  109 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTS-----CCSCTTCEEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhc-----CCCCCCcEEEEEE
Confidence            68999999999999999999854   69999999999999999988776 689999999976     2334578999988


Q ss_pred             eCC--CCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCP--DPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~--~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+  ..+..+.        ..+++++.++|||||.+++
T Consensus       110 ~~~~~~~~~~~~--------~~~l~~~~~~L~~gG~l~~  140 (227)
T 1ve3_A          110 IDSIVHFEPLEL--------NQVFKEVRRVLKPSGKFIM  140 (227)
T ss_dssp             ESCGGGCCHHHH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             cCchHhCCHHHH--------HHHHHHHHHHcCCCcEEEE
Confidence            765  3222222        4899999999999999875

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.62  E-value=4.7e-15  Score=119.46  Aligned_cols=109  Identities=18%  Similarity=0.135  Sum_probs=87.5

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC--EEEEEccccchHHhhccC
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN--IHFLFANASVSFKQLVSS  194 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n--i~~~~~D~~~~~~~~~~~  194 (241)
                      .+.....++.+|||+|||+|.++..+++.  . .+++|+|+|+.+++.++++++..++++  ++++.+|+.+.    .  
T Consensus        45 ~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~--  115 (194)
T 1dus_A           45 VENVVVDKDDDILDLGCGYGVIGIALADE--V-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN----V--  115 (194)
T ss_dssp             HHHCCCCTTCEEEEETCTTSHHHHHHGGG--S-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT----C--
T ss_pred             HHHcccCCCCeEEEeCCCCCHHHHHHHHc--C-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc----c--
Confidence            34444345789999999999999999988  4 689999999999999999999888877  99999999762    1  


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++.+|.|+.+.+..+...       ....+++++.++|+|||.+++
T Consensus       116 ~~~~~D~v~~~~~~~~~~~-------~~~~~l~~~~~~L~~gG~l~~  155 (194)
T 1dus_A          116 KDRKYNKIITNPPIRAGKE-------VLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             TTSCEEEEEECCCSTTCHH-------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccCCceEEEECCCcccchh-------HHHHHHHHHHHHcCCCCEEEE
Confidence            2578999988765433111       125899999999999999875

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.62  E-value=2.3e-15  Score=125.66  Aligned_cols=108  Identities=16%  Similarity=0.145  Sum_probs=83.5

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC-CCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS-YPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~-~~~~~d~V  202 (241)
                      ..+|||||||+|..+..+++..+..++|+|+|+++.+++.|+++++..++. +++++++|+.+.++..... ..++||.|
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V  138 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  138 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence            578999999999999999997652289999999999999999999999885 6999999997654432110 12689999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.....+....        ..+++.+ ++|||||.|++
T Consensus       139 ~~d~~~~~~~~~--------~~~~~~~-~~LkpgG~lv~  168 (221)
T 3u81_A          139 FLDHWKDRYLPD--------TLLLEKC-GLLRKGTVLLA  168 (221)
T ss_dssp             EECSCGGGHHHH--------HHHHHHT-TCCCTTCEEEE
T ss_pred             EEcCCcccchHH--------HHHHHhc-cccCCCeEEEE
Confidence            877543322111        2567777 99999999975

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.62  E-value=1.4e-15  Score=125.57  Aligned_cols=103  Identities=17%  Similarity=0.160  Sum_probs=81.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC--CCEEEEEccccchHHhhccCCCCc-EeE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL--SNIHFLFANASVSFKQLVSSYPGP-LML  201 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l--~ni~~~~~D~~~~~~~~~~~~~~~-~d~  201 (241)
                      +.+|||+|||+|.++..++.+..  .+|+|+|+|++|++.|+++++.+++  ++++++.+|+.+..+.   ..+++ ||.
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~~~fD~  128 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ---PQNQPHFDV  128 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS---CCSSCCEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh---hccCCCCCE
Confidence            57999999999999998777643  4899999999999999999999888  6899999999763211   12578 999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHH--HhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSI--IDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l--~r~LkpGG~l~~  241 (241)
                      |+++.+-.. .        ....+++.+  .++|+|||.+++
T Consensus       129 I~~~~~~~~-~--------~~~~~l~~~~~~~~LkpgG~l~i  161 (201)
T 2ift_A          129 VFLDPPFHF-N--------LAEQAISLLCENNWLKPNALIYV  161 (201)
T ss_dssp             EEECCCSSS-C--------HHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             EEECCCCCC-c--------cHHHHHHHHHhcCccCCCcEEEE
Confidence            988765211 1        124788888  778999999875

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.62  E-value=1.5e-15  Score=131.48  Aligned_cols=104  Identities=19%  Similarity=0.286  Sum_probs=85.7

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||||||+|.++..+++.+|...+|+|+|+|+.+++.|++++...+. |++++++|+.+     .+ ++++||.|
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~-----~~-~~~~fD~v   93 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATE-----IE-LNDKYDIA   93 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTT-----CC-CSSCEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhh-----cC-cCCCeeEE
Confidence            3468999999999999999999987437999999999999999999876654 89999999986     22 25789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......+..+.        ..+++++.++|||||.+++
T Consensus        94 ~~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~  124 (284)
T 3gu3_A           94 ICHAFLLHMTTP--------ETMLQKMIHSVKKGGKIIC  124 (284)
T ss_dssp             EEESCGGGCSSH--------HHHHHHHHHTEEEEEEEEE
T ss_pred             EECChhhcCCCH--------HHHHHHHHHHcCCCCEEEE
Confidence            887654333322        4999999999999999874

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.62  E-value=2e-15  Score=136.61  Aligned_cols=109  Identities=21%  Similarity=0.271  Sum_probs=87.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHh-----C-C--CCEEEEEccccchHHhh-cc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQEL-----A-L--SNIHFLFANASVSFKQL-VS  193 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~-----~-l--~ni~~~~~D~~~~~~~~-~~  193 (241)
                      ++.+|||||||+|.++..+++.+ ++ .+|+|+|+|+.+++.|+++++..     | .  .+++++++|+.+..... .+
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEH-GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTT-CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            46899999999999999999986 56 79999999999999999988765     3 2  58999999998621100 03


Q ss_pred             CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++++||+|+.+....+..+.        ..+++++.++|||||+|+|
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~i  201 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNK--------LALFKEIHRVLRDGGELYF  201 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCEEEEEEccchhcCCCH--------HHHHHHHHHHcCCCCEEEE
Confidence            356899999887755444332        4999999999999999875

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.62  E-value=1.6e-15  Score=128.57  Aligned_cols=101  Identities=17%  Similarity=0.230  Sum_probs=83.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.  + .+++|+|+|+.+++.+++++ ..+..+++++.+|+.+     .+..+++||.|+
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~-----~~~~~~~fD~v~  109 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIAR--G-YRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARA-----IPLPDESVHGVI  109 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTT--T-CEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTS-----CCSCTTCEEEEE
T ss_pred             CCCEEEEeCCcCCHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHh-hccCCceEEEEccccc-----CCCCCCCeeEEE
Confidence            4689999999999999999987  4 68999999999999999987 3345689999999976     333468899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......|..+.        ..+++++.++|||||.+++
T Consensus       110 ~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~~  139 (263)
T 2yqz_A          110 VVHLWHLVPDW--------PKVLAEAIRVLKPGGALLE  139 (263)
T ss_dssp             EESCGGGCTTH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             ECCchhhcCCH--------HHHHHHHHHHCCCCcEEEE
Confidence            87765554333        4899999999999999875

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.61  E-value=1.2e-15  Score=127.83  Aligned_cols=97  Identities=16%  Similarity=0.285  Sum_probs=79.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.++   +|+|+|+|+.+++.|+++...    +++++++|+.+.      .++++||.|+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~------~~~~~fD~v~  108 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKD----GITYIHSRFEDA------QLPRRYDNIV  108 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC------CCSSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc------CcCCcccEEE
Confidence            467899999999999999998755   599999999999999886531    799999999762      2468899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHH-hccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSII-DYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~-r~LkpGG~l~~  241 (241)
                      ......+..+.        ..+++++. ++|||||.+++
T Consensus       109 ~~~~l~~~~~~--------~~~l~~~~~~~LkpgG~l~i  139 (250)
T 2p7i_A          109 LTHVLEHIDDP--------VALLKRINDDWLAEGGRLFL  139 (250)
T ss_dssp             EESCGGGCSSH--------HHHHHHHHHTTEEEEEEEEE
T ss_pred             EhhHHHhhcCH--------HHHHHHHHHHhcCCCCEEEE
Confidence            77654433332        48999999 99999999875

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.61  E-value=3.2e-15  Score=127.67  Aligned_cols=106  Identities=16%  Similarity=0.225  Sum_probs=86.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccC--CCCcEeE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSS--YPGPLML  201 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~--~~~~~d~  201 (241)
                      ..+|||||||+|..+..+++..+..++|+++|+|+++++.|++++++.++ .+++++.+|+.+.++.....  .+++||.
T Consensus        80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  159 (247)
T 1sui_A           80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF  159 (247)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred             cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence            57999999999999999999987338999999999999999999998888 47999999998765443211  1478999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++......           +..+++++.++|||||.|++
T Consensus       160 V~~d~~~~~-----------~~~~l~~~~~~LkpGG~lv~  188 (247)
T 1sui_A          160 IFVDADKDN-----------YLNYHKRLIDLVKVGGVIGY  188 (247)
T ss_dssp             EEECSCSTT-----------HHHHHHHHHHHBCTTCCEEE
T ss_pred             EEEcCchHH-----------HHHHHHHHHHhCCCCeEEEE
Confidence            987643221           25899999999999999874

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.61  E-value=2.7e-15  Score=127.43  Aligned_cols=104  Identities=15%  Similarity=0.154  Sum_probs=83.7

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||+|||+|.++..+++.. |. +.|+|+|+|++|++.+++++++  ..|+..+.+|+.+..  .....+..+|.
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~-G~V~avD~s~~~~~~l~~~a~~--~~ni~~V~~d~~~p~--~~~~~~~~vDv  150 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPR-GRIYGVEFAPRVMRDLLTVVRD--RRNIFPILGDARFPE--KYRHLVEGVDG  150 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEECCHHHHHHHHHHSTT--CTTEEEEESCTTCGG--GGTTTCCCEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhhHh--hcCeeEEEEeccCcc--ccccccceEEE
Confidence            358999999999999999999985 55 8999999999999999887654  368999999987531  12234578998


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+..++.|+.  .        +.+++++.+.|||||.++|
T Consensus       151 Vf~d~~~~~~--~--------~~~l~~~~r~LKpGG~lvI  180 (233)
T 4df3_A          151 LYADVAQPEQ--A--------AIVVRNARFFLRDGGYMLM  180 (233)
T ss_dssp             EEECCCCTTH--H--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEEeccCChh--H--------HHHHHHHHHhccCCCEEEE
Confidence            8877665532  2        3899999999999999875

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.61  E-value=4.2e-15  Score=124.20  Aligned_cols=111  Identities=15%  Similarity=0.184  Sum_probs=84.2

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+||| +|.++..+++.. . .+|+|+|+|+.+++.|+++++.+++ +++++++|+...    .+..++.||.|
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~----~~~~~~~fD~I  127 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFF-N-CKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGII----KGVVEGTFDVI  127 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHH-C-CEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSS----TTTCCSCEEEE
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhc-C-CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhh----hhcccCceeEE
Confidence            47899999999 999999999986 4 6899999999999999999999888 899999997531    12235889999


Q ss_pred             EEeCCCCchhhhh-h----------hcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKH-H----------KRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~-~----------~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.+.|-.+..... .          ........+++++.++|||||++++
T Consensus       128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  177 (230)
T 3evz_A          128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVAL  177 (230)
T ss_dssp             EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEE
Confidence            8775432111100 0          0011236899999999999999875

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.61  E-value=5.7e-16  Score=131.95  Aligned_cols=106  Identities=14%  Similarity=0.202  Sum_probs=86.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC-CCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS-YPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~-~~~~~d~V  202 (241)
                      ..+|||||||+|..++.+++..+..++|+|||+++++++.|+++++..++. +++++.+|+.+.++..... .+++||.|
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V  140 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI  140 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence            579999999999999999998863389999999999999999999998885 7999999998755443210 14789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++......           ...+++++.++|||||.|++
T Consensus       141 ~~d~~~~~-----------~~~~l~~~~~~LkpGG~lv~  168 (242)
T 3r3h_A          141 FIDADKTN-----------YLNYYELALKLVTPKGLIAI  168 (242)
T ss_dssp             EEESCGGG-----------HHHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCChHH-----------hHHHHHHHHHhcCCCeEEEE
Confidence            88754221           14889999999999999975

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.61  E-value=7.4e-15  Score=124.45  Aligned_cols=103  Identities=18%  Similarity=0.213  Sum_probs=87.2

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHH-CCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCEEEEEccccchHHhhccCCCC
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQEL-ALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~-~p~~~~v~giDis~~~v~~a~~~~~~~-~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      ....++.+|||+|||+|.++..+++. .|. .+++|+|+|+.+++.|+++++.. +..+++++.+|+.+.     +..++
T Consensus        92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-----~~~~~  165 (258)
T 2pwy_A           92 LDLAPGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA-----ELEEA  165 (258)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC-----CCCTT
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc-----CCCCC
Confidence            33345789999999999999999998 566 79999999999999999999887 777899999999762     22357


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+|.|+++.++++             .+++++.++|+|||.+++
T Consensus       166 ~~D~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~  196 (258)
T 2pwy_A          166 AYDGVALDLMEPW-------------KVLEKAALALKPDRFLVA  196 (258)
T ss_dssp             CEEEEEEESSCGG-------------GGHHHHHHHEEEEEEEEE
T ss_pred             CcCEEEECCcCHH-------------HHHHHHHHhCCCCCEEEE
Confidence            8999998876652             789999999999999875

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.61  E-value=3.6e-15  Score=123.27  Aligned_cols=100  Identities=13%  Similarity=0.149  Sum_probs=83.9

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCC-CCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p-~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ..+|||||||+|..+..+++..+ + .+|+|+|+|+.+++.|+++++..++. +++++.+|+.+.++    ..++ ||.|
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~-fD~v  130 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISIS-SRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA----GQRD-IDIL  130 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTT-CEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT----TCCS-EEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc----cCCC-CCEE
Confidence            57899999999999999999887 5 79999999999999999999988874 59999999976332    2346 9999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++......           ...+++++.++|||||.+++
T Consensus       131 ~~~~~~~~-----------~~~~l~~~~~~LkpgG~lv~  158 (210)
T 3c3p_A          131 FMDCDVFN-----------GADVLERMNRCLAKNALLIA  158 (210)
T ss_dssp             EEETTTSC-----------HHHHHHHHGGGEEEEEEEEE
T ss_pred             EEcCChhh-----------hHHHHHHHHHhcCCCeEEEE
Confidence            88753221           25899999999999999874

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.60  E-value=4.4e-15  Score=119.16  Aligned_cols=103  Identities=16%  Similarity=0.059  Sum_probs=81.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.++..++++ +. .+|+|+|+|+.+++.|+++++..++. +++++.+|+.+.++.    .+..||.|
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~fD~i  104 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSR-GM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC----LTGRFDLV  104 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHT-TC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH----BCSCEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh----hcCCCCEE
Confidence            4689999999999999999987 44 68999999999999999999888874 799999999864332    24679998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHH--hccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSII--DYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~--r~LkpGG~l~~  241 (241)
                      +.+.+-. ..        ..+.+++.+.  ++|+|||.+++
T Consensus       105 ~~~~~~~-~~--------~~~~~~~~l~~~~~L~~gG~l~~  136 (177)
T 2esr_A          105 FLDPPYA-KE--------TIVATIEALAAKNLLSEQVMVVC  136 (177)
T ss_dssp             EECCSSH-HH--------HHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             EECCCCC-cc--------hHHHHHHHHHhCCCcCCCcEEEE
Confidence            8775421 11        1146677776  99999999975

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.60  E-value=4.5e-15  Score=121.57  Aligned_cols=98  Identities=20%  Similarity=0.194  Sum_probs=78.9

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||||||+|.++..+++.  + .+++|+|+|+.+++.++++     ..+++++++|+.+     .+..+++||+|+.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~-~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~-----~~~~~~~fD~v~~  108 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--G-HQIEGLEPATRLVELARQT-----HPSVTFHHGTITD-----LSDSPKRWAGLLA  108 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--T-CCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGG-----GGGSCCCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccc-----cccCCCCeEEEEe
Confidence            689999999999999999998  4 5799999999999999875     3579999999976     2334689999988


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .....+...      .....+++++.++|||||.+++
T Consensus       109 ~~~l~~~~~------~~~~~~l~~~~~~L~pgG~l~i  139 (203)
T 3h2b_A          109 WYSLIHMGP------GELPDALVALRMAVEDGGGLLM  139 (203)
T ss_dssp             ESSSTTCCT------TTHHHHHHHHHHTEEEEEEEEE
T ss_pred             hhhHhcCCH------HHHHHHHHHHHHHcCCCcEEEE
Confidence            664433310      0125999999999999999975

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.60  E-value=6.2e-15  Score=123.77  Aligned_cols=104  Identities=20%  Similarity=0.270  Sum_probs=87.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|..+..+++..|+ .+|+|+|+++.+++.|+++++..++. +++++.+|+.+.++...  .++.||.|
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~fD~I  130 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE--LYPLFDVL  130 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT--TSCCEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc--cCCCccEE
Confidence            3579999999999999999999887 89999999999999999999988874 69999999987544321  14789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..+.+.           ...+++.+.++|+|||.+++
T Consensus       131 ~~~~~~~~-----------~~~~l~~~~~~L~pgG~lv~  158 (233)
T 2gpy_A          131 FIDAAKGQ-----------YRRFFDMYSPMVRPGGLILS  158 (233)
T ss_dssp             EEEGGGSC-----------HHHHHHHHGGGEEEEEEEEE
T ss_pred             EECCCHHH-----------HHHHHHHHHHHcCCCeEEEE
Confidence            88764321           25899999999999999875

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.60  E-value=4.2e-15  Score=117.90  Aligned_cols=103  Identities=14%  Similarity=0.073  Sum_probs=80.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.++..+++..+   .++|+|+|+.+++.|+++++..++ +++++++|+.+.++.... .+.++|.|+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~-~~~~~D~i~  115 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKA-QGERFTVAF  115 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhc-cCCceEEEE
Confidence            468999999999999999999844   499999999999999999998887 899999999874433221 235799988


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHH--hccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSII--DYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~--r~LkpGG~l~~  241 (241)
                      .+.+-.  ..        .+.+++.+.  ++|||||.+++
T Consensus       116 ~~~~~~--~~--------~~~~~~~~~~~~~L~~gG~~~~  145 (171)
T 1ws6_A          116 MAPPYA--MD--------LAALFGELLASGLVEAGGLYVL  145 (171)
T ss_dssp             ECCCTT--SC--------TTHHHHHHHHHTCEEEEEEEEE
T ss_pred             ECCCCc--hh--------HHHHHHHHHhhcccCCCcEEEE
Confidence            774321  11        136667777  99999999875

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.60  E-value=2.6e-15  Score=123.45  Aligned_cols=98  Identities=18%  Similarity=0.168  Sum_probs=83.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++. +. .+++|+|+|+.+++.|+++++..+..+++++.+|+.+.       .++.+|.|+
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-------~~~~fD~i~  130 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKL-GA-KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD-------VDGKFDLIV  130 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT-------CCSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHC-CC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc-------CCCCceEEE
Confidence            4689999999999999998875 44 58999999999999999999988887799999999751       357899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.+..+.           ..+++++.++|+|||.+++
T Consensus       131 ~~~~~~~~-----------~~~l~~~~~~L~~gG~l~~  157 (205)
T 3grz_A          131 ANILAEIL-----------LDLIPQLDSHLNEDGQVIF  157 (205)
T ss_dssp             EESCHHHH-----------HHHGGGSGGGEEEEEEEEE
T ss_pred             ECCcHHHH-----------HHHHHHHHHhcCCCCEEEE
Confidence            87654322           5889999999999999875

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.60  E-value=3.1e-15  Score=123.30  Aligned_cols=102  Identities=19%  Similarity=0.247  Sum_probs=82.7

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      +.....++.+|||||||+|.++..+++.  . .+|+|+|+|+++++.|+++++..+++|++++.+|+.+...     .++
T Consensus        71 ~~l~~~~~~~vLdiG~G~G~~~~~la~~--~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~  142 (210)
T 3lbf_A           71 ELLELTPQSRVLEIGTGSGYQTAILAHL--V-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ-----ARA  142 (210)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHH--S-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGC
T ss_pred             HhcCCCCCCEEEEEcCCCCHHHHHHHHh--C-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc-----cCC
Confidence            3344445789999999999999999998  4 6899999999999999999999888899999999976211     247


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .||.|++....++.              .+++.++|||||++++
T Consensus       143 ~~D~i~~~~~~~~~--------------~~~~~~~L~pgG~lv~  172 (210)
T 3lbf_A          143 PFDAIIVTAAPPEI--------------PTALMTQLDEGGILVL  172 (210)
T ss_dssp             CEEEEEESSBCSSC--------------CTHHHHTEEEEEEEEE
T ss_pred             CccEEEEccchhhh--------------hHHHHHhcccCcEEEE
Confidence            89999887554432              1257899999999875

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.60  E-value=3.9e-15  Score=128.52  Aligned_cols=99  Identities=20%  Similarity=0.224  Sum_probs=85.4

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHH-CCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCEEEEEccccchHHhhccCCCCcEe
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQEL-ALSNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~-~p~~~~v~giDis~~~v~~a~~~~~~~-~l~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      .++.+|||+|||+|.++..+++. .+. .+|+|+|+++.+++.|+++++.. +.++++++.+|+.+.    +  +++.||
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~----~--~~~~fD  181 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF----I--SDQMYD  181 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC----C--CSCCEE
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc----C--cCCCcc
Confidence            34689999999999999999998 666 79999999999999999999887 777899999999752    2  357899


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+++.+++             ..+++++.++|||||.+++
T Consensus       182 ~Vi~~~~~~-------------~~~l~~~~~~LkpgG~l~i  209 (275)
T 1yb2_A          182 AVIADIPDP-------------WNHVQKIASMMKPGSVATF  209 (275)
T ss_dssp             EEEECCSCG-------------GGSHHHHHHTEEEEEEEEE
T ss_pred             EEEEcCcCH-------------HHHHHHHHHHcCCCCEEEE
Confidence            999876655             2889999999999999875

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.60  E-value=2.8e-15  Score=126.66  Aligned_cols=104  Identities=17%  Similarity=0.178  Sum_probs=82.5

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||||||+|.++..+++.. . .+|+|+|+|+.+++.|+++....  .+++++.+|+.+     .+..+++||+|
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~-----~~~~~~~fD~v  162 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL-Y-ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMET-----ATLPPNTYDLI  162 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH-C-SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGG-----CCCCSSCEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh-c-CEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHH-----CCCCCCCeEEE
Confidence            357899999999999999999886 3 57999999999999999876543  579999999976     33346789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......+....      ....+++++.++|||||.++|
T Consensus       163 ~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i  195 (254)
T 1xtp_A          163 VIQWTAIYLTDA------DFVKFFKHCQQALTPNGYIFF  195 (254)
T ss_dssp             EEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEcchhhhCCHH------HHHHHHHHHHHhcCCCeEEEE
Confidence            887654333110      114899999999999999875

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.60  E-value=2.9e-15  Score=129.98  Aligned_cols=97  Identities=9%  Similarity=0.001  Sum_probs=83.3

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +.+|||+|||+|.+++.+++..+.  +|+|+|+|+.+++.|+++++.+++.+ ++++++|+.+.     . .+..||.|+
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~-----~-~~~~fD~Vi  197 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF-----P-GENIADRIL  197 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC-----C-CCSCEEEEE
T ss_pred             CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHh-----c-ccCCccEEE
Confidence            689999999999999999998654  79999999999999999999999865 99999999872     2 257899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.+...            ..+++++.++|||||.+++
T Consensus       198 ~~~p~~~------------~~~l~~~~~~LkpgG~l~~  223 (278)
T 2frn_A          198 MGYVVRT------------HEFIPKALSIAKDGAIIHY  223 (278)
T ss_dssp             ECCCSSG------------GGGHHHHHHHEEEEEEEEE
T ss_pred             ECCchhH------------HHHHHHHHHHCCCCeEEEE
Confidence            8765322            3789999999999999875

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.60  E-value=4.2e-15  Score=123.05  Aligned_cols=99  Identities=13%  Similarity=0.157  Sum_probs=79.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..++++  + .+++|+|+|+.+++.++++..    .+++++.+|+.+     .+.. ++||.|+
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~-----~~~~-~~fD~v~  111 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA--G-RTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLS-----FEVP-TSIDTIV  111 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSS-----CCCC-SCCSEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC--C-CeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhh-----cCCC-CCeEEEE
Confidence            4689999999999999999997  4 689999999999999988653    478999999986     2323 7899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+..+..      ...+++++.++|||||.+++
T Consensus       112 ~~~~l~~~~~~~------~~~~l~~~~~~LkpgG~l~i  143 (220)
T 3hnr_A          112 STYAFHHLTDDE------KNVAIAKYSQLLNKGGKIVF  143 (220)
T ss_dssp             EESCGGGSCHHH------HHHHHHHHHHHSCTTCEEEE
T ss_pred             ECcchhcCChHH------HHHHHHHHHHhcCCCCEEEE
Confidence            876544433321      12499999999999999875

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.60  E-value=8.7e-16  Score=125.95  Aligned_cols=115  Identities=13%  Similarity=0.117  Sum_probs=67.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+|||+|.++..+++.+++ .+++|+|+|+.+++.|+++++..+. +++++++|+.+.++... ...++||.|
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~-~~~~~fD~i  105 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERA-ERGRPWHAI  105 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC--------------------CCHHHHHHHHHHHH-HTTCCBSEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhh-hccCcccEE
Confidence            45789999999999999999999887 8999999999999999999988777 89999999986432210 123789999


Q ss_pred             EEeCCCCchhhhhh------------------hcccchHHHHHHHHhccccCCE-EE
Q 026219          203 SILCPDPHFKKKHH------------------KRRVVQKPLVDSIIDYLMPGGK-VY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~------------------~~r~~~~~ll~~l~r~LkpGG~-l~  240 (241)
                      +.+.|-.......+                  .....+..+++++.++|||||. ++
T Consensus       106 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  162 (215)
T 4dzr_A          106 VSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVF  162 (215)
T ss_dssp             EECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEE
T ss_pred             EECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            88654211110000                  0011126899999999999999 54

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=4.4e-15  Score=128.52  Aligned_cols=99  Identities=16%  Similarity=0.131  Sum_probs=85.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.+++.+++..+. .+|+|+|+|+.+++.|+++++.++++|+.++.+|+.+.     + .+..+|.|+
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~~~-~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-----~-~~~~~D~Vi  191 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYSKP-KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-----E-LKDVADRVI  191 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCC-SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-----C-CTTCEEEEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-----C-ccCCceEEE
Confidence            4689999999999999999999776 78999999999999999999999998999999999862     1 156899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..|...            ..+++++.+.|+|||.+++
T Consensus       192 ~d~p~~~------------~~~l~~~~~~LkpgG~l~~  217 (272)
T 3a27_A          192 MGYVHKT------------HKFLDKTFEFLKDRGVIHY  217 (272)
T ss_dssp             ECCCSSG------------GGGHHHHHHHEEEEEEEEE
T ss_pred             ECCcccH------------HHHHHHHHHHcCCCCEEEE
Confidence            8765311            3788999999999999875

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.60  E-value=4e-15  Score=127.83  Aligned_cols=117  Identities=18%  Similarity=0.152  Sum_probs=87.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH---hCCC-CEEEEEccccchHHhhc--cCCCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE---LALS-NIHFLFANASVSFKQLV--SSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~---~~l~-ni~~~~~D~~~~~~~~~--~~~~~  197 (241)
                      ++.+|||+|||+|.+++.++++++. .+|+|+|+++.+++.|+++++.   +++. +++++++|+.+..+...  ...++
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  114 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE  114 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence            4679999999999999999999987 8999999999999999999987   7775 59999999987533210  12357


Q ss_pred             cEeEEEEeCCCCchh----------hhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFK----------KKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~----------~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +||.|+.+.|-....          ...+......+.+++.+.++|||||.+++
T Consensus       115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  168 (260)
T 2ozv_A          115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL  168 (260)
T ss_dssp             CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred             CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence            899998874431110          00011112357899999999999999875

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.60  E-value=2e-15  Score=127.23  Aligned_cols=105  Identities=14%  Similarity=0.147  Sum_probs=83.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.. . .+|+|+|+|+.+++.|+++....+..+++++.+|+.+     .+..+++||+|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~fD~v~  151 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-F-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQD-----FTPEPDSYDVIW  151 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-C-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGG-----CCCCSSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-C-CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhh-----cCCCCCCEEEEE
Confidence            46899999999999999998876 3 5899999999999999998876544579999999875     233456899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.....+..+.      ....+++++.++|||||.++|
T Consensus       152 ~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i  183 (241)
T 2ex4_A          152 IQWVIGHLTDQ------HLAEFLRRCKGSLRPNGIIVI  183 (241)
T ss_dssp             EESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             EcchhhhCCHH------HHHHHHHHHHHhcCCCeEEEE
Confidence            87654333221      114899999999999999875

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.59  E-value=5.6e-15  Score=122.07  Aligned_cols=102  Identities=16%  Similarity=0.111  Sum_probs=81.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||+|||+|.+++.++++..  .+|+|+|+|+.|++.|+++++.+++.+++++++|+.+.+    +..+..||+|++
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~----~~~~~~fD~V~~  128 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL----AQKGTPHNIVFV  128 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH----SSCCCCEEEEEE
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH----hhcCCCCCEEEE
Confidence            57999999999999999887753  379999999999999999999988888999999997632    223578999887


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHh--ccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIID--YLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r--~LkpGG~l~~  241 (241)
                      ..+-...         ....+++.+.+  +|+|||.+++
T Consensus       129 ~~p~~~~---------~~~~~l~~l~~~~~L~pgG~l~i  158 (202)
T 2fpo_A          129 DPPFRRG---------LLEETINLLEDNGWLADEALIYV  158 (202)
T ss_dssp             CCSSSTT---------THHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CCCCCCC---------cHHHHHHHHHhcCccCCCcEEEE
Confidence            6541110         12467777755  6999999875

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.59  E-value=9.5e-15  Score=126.07  Aligned_cols=111  Identities=20%  Similarity=0.261  Sum_probs=88.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.++..+++.+++ .+|+|+|+|+.+++.|+++++..++++++++++|+.+.    .  .++.||.|+
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~----~--~~~~fD~Iv  181 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA----L--AGQQFAMIV  181 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG----G--TTCCEEEEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh----c--ccCCccEEE
Confidence            4679999999999999999998888 89999999999999999999999888899999999762    2  257899998


Q ss_pred             EeCCCCchhhhh-------hhc----------ccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKH-------HKR----------RVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~-------~~~----------r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.|-......+       ++.          ......+++++.++|||||.+++
T Consensus       182 ~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~  236 (276)
T 2b3t_A          182 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL  236 (276)
T ss_dssp             ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            875532111100       000          01346899999999999999875

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.59  E-value=8.3e-15  Score=131.01  Aligned_cols=113  Identities=19%  Similarity=0.105  Sum_probs=88.4

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||+|||+|.+++.++... ++ ..++|+|+|+.+++.|++|++..++.+++++++|+.+.     ..+...+|.
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~-~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~-----~~~~~~~D~  275 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPT-SPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL-----PRFFPEVDR  275 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTT-SCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGG-----GGTCCCCSE
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCC-ceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhC-----ccccCCCCE
Confidence            346799999999999999999987 66 78999999999999999999999988999999999872     223456799


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+.+.|-.+...........+..+++++.++|||||.+++
T Consensus       276 Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i  315 (354)
T 3tma_A          276 ILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVAL  315 (354)
T ss_dssp             EEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEE
T ss_pred             EEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            8887653211111111223457899999999999999875

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.59  E-value=2.2e-15  Score=124.55  Aligned_cols=104  Identities=17%  Similarity=0.234  Sum_probs=82.2

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ..++.+|||||||+|.++..+++..   .+|+|+|+|+.+++.|+++....  .+++++++|+.+     .. ++++||.
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~-----~~-~~~~fD~  117 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQ-----FS-TAELFDL  117 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTT-----CC-CSCCEEE
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhh-----CC-CCCCccE
Confidence            3346799999999999999999884   47999999999999999887543  489999999986     22 4688999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+......+..+..     ....+++++.++|||||.++|
T Consensus       118 v~~~~~l~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~  152 (216)
T 3ofk_A          118 IVVAEVLYYLEDMT-----QMRTAIDNMVKMLAPGGHLVF  152 (216)
T ss_dssp             EEEESCGGGSSSHH-----HHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEccHHHhCCCHH-----HHHHHHHHHHHHcCCCCEEEE
Confidence            98876543332210     113789999999999999975

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.59  E-value=6.3e-15  Score=121.34  Aligned_cols=99  Identities=17%  Similarity=0.149  Sum_probs=81.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.  + .+++|+|+|+.+++.+++    .+..+++++++|+.+.      ..+++||.|+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~--~-~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~------~~~~~~D~v~  112 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGL--A-DRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW------TPDRQWDAVF  112 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHH--S-SEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC------CCSSCEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhc--C-CeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC------CCCCceeEEE
Confidence            4579999999999999999998  4 689999999999999987    4667899999999762      2468999998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+..+.      ....+++++.++|||||.+++
T Consensus       113 ~~~~l~~~~~~------~~~~~l~~~~~~L~pgG~l~~  144 (218)
T 3ou2_A          113 FAHWLAHVPDD------RFEAFWESVRSAVAPGGVVEF  144 (218)
T ss_dssp             EESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             EechhhcCCHH------HHHHHHHHHHHHcCCCeEEEE
Confidence            87654333221      114899999999999999875

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.59  E-value=9.7e-15  Score=126.00  Aligned_cols=103  Identities=15%  Similarity=0.175  Sum_probs=82.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||||||+|.++..+++..+  .+|+|+|+|+++++.|+++++..++ .+++++.+|+.+     +   +++||.
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~---~~~fD~  132 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-----F---DEPVDR  132 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-----C---CCCCSE
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-----C---CCCeeE
Confidence            4567999999999999999997654  4899999999999999999987776 479999999965     2   278998


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+......+...      .....+++++.++|||||.+++
T Consensus       133 v~~~~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~~  166 (287)
T 1kpg_A          133 IVSIGAFEHFGH------ERYDAFFSLAHRLLPADGVMLL  166 (287)
T ss_dssp             EEEESCGGGTCT------TTHHHHHHHHHHHSCTTCEEEE
T ss_pred             EEEeCchhhcCh------HHHHHHHHHHHHhcCCCCEEEE
Confidence            877643322210      0114899999999999999875

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.59  E-value=8.1e-15  Score=124.18  Aligned_cols=106  Identities=15%  Similarity=0.278  Sum_probs=86.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC--CCCcEeE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS--YPGPLML  201 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~--~~~~~d~  201 (241)
                      ..+|||||||+|..+..+++..+..++++++|+++++++.|++++++.++. +++++.+|+.+.++.....  .++.||.
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~  150 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF  150 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence            579999999999999999999873389999999999999999999998885 6999999998765543211  1478999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++....+           .+..+++.+.++|+|||.+++
T Consensus       151 I~~d~~~~-----------~~~~~l~~~~~~L~pGG~lv~  179 (237)
T 3c3y_A          151 GFVDADKP-----------NYIKYHERLMKLVKVGGIVAY  179 (237)
T ss_dssp             EEECSCGG-----------GHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCchH-----------HHHHHHHHHHHhcCCCeEEEE
Confidence            98764221           125899999999999999874

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.59  E-value=5.3e-15  Score=124.03  Aligned_cols=99  Identities=13%  Similarity=0.160  Sum_probs=81.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.  + .+|+|+|+|+.+++.++++.   ...+++++++|+.+     .+.++++||.|+
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~-----~~~~~~~fD~v~  121 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRT--G-YKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSS-----LPFENEQFEAIM  121 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--T-CEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTB-----CSSCTTCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHc--C-CeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhc-----CCCCCCCccEEE
Confidence            4689999999999999999997  4 68999999999999998764   33589999999986     334578999998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+..+.        ..+++++.++|+|||.++|
T Consensus       122 ~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~i  151 (242)
T 3l8d_A          122 AINSLEWTEEP--------LRALNEIKRVLKSDGYACI  151 (242)
T ss_dssp             EESCTTSSSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EcChHhhccCH--------HHHHHHHHHHhCCCeEEEE
Confidence            77655444333        4899999999999999875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.59  E-value=8.2e-15  Score=132.60  Aligned_cols=112  Identities=19%  Similarity=0.167  Sum_probs=87.8

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC---CEEEEEccccchHHhhccCCC
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS---NIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~---ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      +....+.+|||+|||+|.++..+++.+|+ .+|+|+|+|+.+++.|+++++.+++.   +++++.+|+.+.    +  .+
T Consensus       218 l~~~~~~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~----~--~~  290 (375)
T 4dcm_A          218 LPENLEGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG----V--EP  290 (375)
T ss_dssp             CCCSCCSEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT----C--CT
T ss_pred             CcccCCCeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc----C--CC
Confidence            43334589999999999999999999988 89999999999999999999998864   589999999762    2  35


Q ss_pred             CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.||.|+.+.|-.+...   ..+.....+++++.++|||||.++|
T Consensus       291 ~~fD~Ii~nppfh~~~~---~~~~~~~~~l~~~~~~LkpgG~l~i  332 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHA---LTDNVAWEMFHHARRCLKINGELYI  332 (375)
T ss_dssp             TCEEEEEECCCC----------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCeeEEEECCCcccCcc---cCHHHHHHHHHHHHHhCCCCcEEEE
Confidence            78999988765321100   1112234789999999999999985

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.59  E-value=7.5e-15  Score=125.59  Aligned_cols=113  Identities=20%  Similarity=0.205  Sum_probs=85.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.+++.++++.+.  +|+|+|+++.+++.|+++++.+++. +++++++|+.+....   ..+++||.|
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~---~~~~~fD~I  123 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL---IPKERADIV  123 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT---SCTTCEEEE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh---hccCCccEE
Confidence            4789999999999999999998653  8999999999999999999999885 699999999874221   236889999


Q ss_pred             EEeCCCCch-----hh-------hhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHF-----KK-------KHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~-----~~-------~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.+.|--..     ..       ..++.....+.+++.+.++|||||++++
T Consensus       124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence            886442100     00       0011112335899999999999999875

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.59  E-value=9.3e-15  Score=126.19  Aligned_cols=102  Identities=11%  Similarity=0.099  Sum_probs=83.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.  + .+|+|+|+|+.+++.|++++...++ +++++.+|+.+     .. .++.||.|+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~--g-~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~-----~~-~~~~fD~i~  189 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL--G-YDVTSWDHNENSIAFLNETKEKENL-NISTALYDINA-----AN-IQENYDFIV  189 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGG-----CC-CCSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHC--C-CeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEecccc-----cc-ccCCccEEE
Confidence            4689999999999999999998  4 5899999999999999999998887 89999999976     22 268899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+...      .....+++++.++|||||.++|
T Consensus       190 ~~~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~i  221 (286)
T 3m70_A          190 STVVFMFLNR------ERVPSIIKNMKEHTNVGGYNLI  221 (286)
T ss_dssp             ECSSGGGSCG------GGHHHHHHHHHHTEEEEEEEEE
T ss_pred             EccchhhCCH------HHHHHHHHHHHHhcCCCcEEEE
Confidence            7654332211      1125899999999999999764

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.58  E-value=1.2e-14  Score=127.49  Aligned_cols=103  Identities=17%  Similarity=0.207  Sum_probs=83.3

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||||||+|.++..+++.+ + .+|+|+|+|+++++.|+++.+..++. +++++.+|+.+     +   +++||.
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~---~~~fD~  158 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERF-D-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-----F---AEPVDR  158 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-C-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-----C---CCCCSE
T ss_pred             CCcCEEEEEcccchHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-----C---CCCcCE
Confidence            456899999999999999999886 4 58999999999999999999887774 69999999975     2   378999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+......+...      .....+++++.++|||||.+++
T Consensus       159 v~~~~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~~  192 (318)
T 2fk8_A          159 IVSIEAFEHFGH------ENYDDFFKRCFNIMPADGRMTV  192 (318)
T ss_dssp             EEEESCGGGTCG------GGHHHHHHHHHHHSCTTCEEEE
T ss_pred             EEEeChHHhcCH------HHHHHHHHHHHHhcCCCcEEEE
Confidence            887654332210      0115899999999999999875

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.58  E-value=8.2e-15  Score=123.12  Aligned_cols=103  Identities=14%  Similarity=0.143  Sum_probs=81.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++..+. .+|+|+|+|+.+++.++++++..  +|+.++.+|+.+... ..+ .+..+|.|+
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~-~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~-~~~-~~~~~D~v~  148 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQE-YAN-IVEKVDVIY  148 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGG-GTT-TSCCEEEEE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCC-cEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCccc-ccc-cCccEEEEE
Confidence            4679999999999999999999875 79999999999999999887544  689999999976211 112 236799988


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ...+++.  .        ...+++++.++|||||.+++
T Consensus       149 ~~~~~~~--~--------~~~~l~~~~~~LkpgG~l~i  176 (230)
T 1fbn_A          149 EDVAQPN--Q--------AEILIKNAKWFLKKGGYGMI  176 (230)
T ss_dssp             ECCCSTT--H--------HHHHHHHHHHHEEEEEEEEE
T ss_pred             EecCChh--H--------HHHHHHHHHHhCCCCcEEEE
Confidence            6554431  1        13789999999999999875

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.58  E-value=8.4e-15  Score=117.98  Aligned_cols=106  Identities=14%  Similarity=0.043  Sum_probs=82.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.++..+++. +. .+|+|+|+|+.+++.|+++++.+++ ++++++++|+.+..+... ..+..||.|
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~fD~i  120 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSR-GM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFY-EEKLQFDLV  120 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHH-HTTCCEEEE
T ss_pred             CCCCEEEeCCccCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHH-hcCCCCCEE
Confidence            4689999999999999998884 44 5899999999999999999998887 479999999987443321 125789998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHH--HhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSI--IDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l--~r~LkpGG~l~~  241 (241)
                      +++.+-. ..        .....++.+  .++|+|||.+++
T Consensus       121 ~~~~~~~-~~--------~~~~~~~~l~~~~~L~~gG~l~~  152 (187)
T 2fhp_A          121 LLDPPYA-KQ--------EIVSQLEKMLERQLLTNEAVIVC  152 (187)
T ss_dssp             EECCCGG-GC--------CHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             EECCCCC-ch--------hHHHHHHHHHHhcccCCCCEEEE
Confidence            8775411 00        114667777  899999999875

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.58  E-value=1.5e-14  Score=124.31  Aligned_cols=103  Identities=19%  Similarity=0.246  Sum_probs=86.7

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHH-CCCCcEEEEEeCCHHHHHHHHHHHHHh-C--CCCEEEEEccccchHHhhccCC
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQEL-A--LSNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~-~p~~~~v~giDis~~~v~~a~~~~~~~-~--l~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      ....++.+|||+|||+|.++..+++. .+. .+++|+|+++++++.|+++++.. +  ..+++++.+|+.+.     ...
T Consensus        95 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-----~~~  168 (280)
T 1i9g_A           95 GDIFPGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-----ELP  168 (280)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-----CCC
T ss_pred             cCCCCCCEEEEEcccccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-----CCC
Confidence            33335679999999999999999996 456 79999999999999999999887 6  57899999999762     223


Q ss_pred             CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.+|.|+++.+++|             .+++++.++|+|||.+++
T Consensus       169 ~~~~D~v~~~~~~~~-------------~~l~~~~~~L~pgG~l~~  201 (280)
T 1i9g_A          169 DGSVDRAVLDMLAPW-------------EVLDAVSRLLVAGGVLMV  201 (280)
T ss_dssp             TTCEEEEEEESSCGG-------------GGHHHHHHHEEEEEEEEE
T ss_pred             CCceeEEEECCcCHH-------------HHHHHHHHhCCCCCEEEE
Confidence            578999999887763             789999999999999875

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=121.91  Aligned_cols=103  Identities=15%  Similarity=0.158  Sum_probs=82.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.++..+++.. +. .+|+|+|+|+.+++.+.++++.+  .|++++.+|+.+...  .+..+++||.|
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~--~~~~~~~~D~V  151 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHK--YRMLIAMVDVI  151 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGG--GGGGCCCEEEE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhh--hcccCCcEEEE
Confidence            46799999999999999999986 55 78999999999999888887765  689999999976311  12235789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.+.+.++.  .        ..+++++.++|||||.+++
T Consensus       152 ~~~~~~~~~--~--------~~~~~~~~~~LkpgG~l~i  180 (233)
T 2ipx_A          152 FADVAQPDQ--T--------RIVALNAHTFLRNGGHFVI  180 (233)
T ss_dssp             EECCCCTTH--H--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCCCccH--H--------HHHHHHHHHHcCCCeEEEE
Confidence            987764432  1        3678899999999999975

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.58  E-value=7e-15  Score=122.26  Aligned_cols=105  Identities=21%  Similarity=0.309  Sum_probs=82.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-----CEEEEEccccchHHhhccCCCCc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-----NIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-----ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++.+|||||||+|.++..+++.  + .+++|+|+|+.+++.+++++...++.     +++++.+|+.+     .+..+++
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~  101 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASK--G-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS-----LSFHDSS  101 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTS-----CCSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhC--C-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccc-----cCCCCCc
Confidence            3689999999999999999998  4 68999999999999999988766542     58999999976     3334688


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|+......+..+..     ....+++++.++|||||.+++
T Consensus       102 ~D~v~~~~~l~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~  139 (235)
T 3sm3_A          102 FDFAVMQAFLTSVPDPK-----ERSRIIKEVFRVLKPGAYLYL  139 (235)
T ss_dssp             EEEEEEESCGGGCCCHH-----HHHHHHHHHHHHEEEEEEEEE
T ss_pred             eeEEEEcchhhcCCCHH-----HHHHHHHHHHHHcCCCeEEEE
Confidence            99998765433221110     113899999999999999875

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.58  E-value=7.4e-15  Score=126.49  Aligned_cols=103  Identities=20%  Similarity=0.275  Sum_probs=82.4

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      .+.+...++.+|||||||+|.++..+++  ++ .+|+|+|+|+.|++.++++.     ++++++.+|+.+     .+ ++
T Consensus        50 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~--~~-~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~-----~~-~~  115 (279)
T 3ccf_A           50 LQLLNPQPGEFILDLGCGTGQLTEKIAQ--SG-AEVLGTDNAATMIEKARQNY-----PHLHFDVADARN-----FR-VD  115 (279)
T ss_dssp             HHHHCCCTTCEEEEETCTTSHHHHHHHH--TT-CEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTT-----CC-CS
T ss_pred             HHHhCCCCCCEEEEecCCCCHHHHHHHh--CC-CeEEEEECCHHHHHHHHhhC-----CCCEEEECChhh-----CC-cC
Confidence            3444444568999999999999999998  45 78999999999999998754     578999999976     22 35


Q ss_pred             CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++||.|+......|..+.        ..+++++.++|||||.+++
T Consensus       116 ~~fD~v~~~~~l~~~~d~--------~~~l~~~~~~LkpgG~l~~  152 (279)
T 3ccf_A          116 KPLDAVFSNAMLHWVKEP--------EAAIASIHQALKSGGRFVA  152 (279)
T ss_dssp             SCEEEEEEESCGGGCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             CCcCEEEEcchhhhCcCH--------HHHHHHHHHhcCCCcEEEE
Confidence            789999887655443332        4899999999999999875

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.58  E-value=1.2e-14  Score=122.73  Aligned_cols=107  Identities=19%  Similarity=0.251  Sum_probs=86.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhcc---------
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVS---------  193 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~---------  193 (241)
                      ++.+|||||||+|..+..+++..+...+|+|+|+++.+++.|+++++..++.+ ++++.+|+.+.++....         
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  139 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS  139 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence            35799999999999999999998722799999999999999999999888854 99999999765443211         


Q ss_pred             -CCC--CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 -SYP--GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 -~~~--~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       +.+  +.||.|++....+.           ...+++++.++|+|||.+++
T Consensus       140 ~f~~~~~~fD~I~~~~~~~~-----------~~~~l~~~~~~L~pgG~lv~  179 (239)
T 2hnk_A          140 DFAFGPSSIDLFFLDADKEN-----------YPNYYPLILKLLKPGGLLIA  179 (239)
T ss_dssp             TTCCSTTCEEEEEECSCGGG-----------HHHHHHHHHHHEEEEEEEEE
T ss_pred             cccCCCCCcCEEEEeCCHHH-----------HHHHHHHHHHHcCCCeEEEE
Confidence             112  68999987754321           14889999999999999875

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.57  E-value=6.9e-15  Score=120.66  Aligned_cols=102  Identities=19%  Similarity=0.181  Sum_probs=79.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|..+..++.. ++ .+++|+|+|+.+++.++++++..+ .+++++.+|+.+     .+.+++++|.|+
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~-----~~~~~~~fD~v~   94 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVE-DG-YKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRK-----LPFKDESMSFVY   94 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHH-TT-CEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTS-----CCSCTTCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHh-CC-CEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhh-----CCCCCCceeEEE
Confidence            4689999999999985544443 34 689999999999999999988776 478999999976     333468899988


Q ss_pred             EeCCCCch--hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHF--KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~--~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+.  .+        ...+++++.++|||||.+++
T Consensus        95 ~~~~l~~~~~~~--------~~~~l~~~~~~LkpgG~l~~  126 (209)
T 2p8j_A           95 SYGTIFHMRKND--------VKEAIDEIKRVLKPGGLACI  126 (209)
T ss_dssp             ECSCGGGSCHHH--------HHHHHHHHHHHEEEEEEEEE
T ss_pred             EcChHHhCCHHH--------HHHHHHHHHHHcCCCcEEEE
Confidence            75433222  22        25899999999999999875

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.57  E-value=2e-14  Score=121.50  Aligned_cols=103  Identities=20%  Similarity=0.343  Sum_probs=81.5

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +++.+|||||||+|.++..+++.  + .+|+|+|+|+.|++.|+++....+. +++++++|+.+     .+ .+..+|.|
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~--~-~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~-----~~-~~~~fD~v  109 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER--G-YEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLE-----IA-FKNEFDAV  109 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGG-----CC-CCSCEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC--C-CeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhh-----cc-cCCCccEE
Confidence            34679999999999999999987  4 6899999999999999999987775 79999999976     22 24679998


Q ss_pred             EEeCCCC-chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDP-HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~-~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.+... +...      .....+++++.++|||||.+++
T Consensus       110 ~~~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~li~  143 (252)
T 1wzn_A          110 TMFFSTIMYFDE------EDLRKLFSKVAEALKPGGVFIT  143 (252)
T ss_dssp             EECSSGGGGSCH------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCCchhcCCH------HHHHHHHHHHHHHcCCCeEEEE
Confidence            8654321 1110      0125899999999999999875

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.57  E-value=1.4e-14  Score=120.85  Aligned_cols=107  Identities=15%  Similarity=0.192  Sum_probs=86.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccC-CCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSS-YPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~-~~~~~d~  201 (241)
                      ++.+|||||||+|..+..+++..+...+|+++|+++.+++.|+++++..++ .+++++.+|+.+.++.+... ..+.||.
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~  148 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV  148 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence            357999999999999999999876327999999999999999999998887 57999999998755443210 1167999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++..+..           .+..+++++.++|+|||.+++
T Consensus       149 v~~d~~~~-----------~~~~~l~~~~~~L~pgG~lv~  177 (229)
T 2avd_A          149 AVVDADKE-----------NCSAYYERCLQLLRPGGILAV  177 (229)
T ss_dssp             EEECSCST-----------THHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCHH-----------HHHHHHHHHHHHcCCCeEEEE
Confidence            88765422           124899999999999999875

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.57  E-value=1.7e-14  Score=127.48  Aligned_cols=116  Identities=13%  Similarity=0.208  Sum_probs=88.3

Q ss_pred             cCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEe
Q 026219          121 KNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       121 ~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ...++.+|||+|||+|..+..+++..++.+.|+|+|+|+.+++.+++++++.++.|++++++|+.+..     ..++.||
T Consensus       115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~-----~~~~~fD  189 (315)
T 1ixk_A          115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG-----ELNVEFD  189 (315)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG-----GGCCCEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcc-----cccccCC
Confidence            33456899999999999999999987533799999999999999999999999989999999997621     1356899


Q ss_pred             EEEEeCCC---------Cc-----hhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPD---------PH-----FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~---------~~-----~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|++..|-         |.     ......+....+..+++++.++|||||++++
T Consensus       190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~  244 (315)
T 1ixk_A          190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVY  244 (315)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            99886441         10     0000000112346999999999999999874

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.57  E-value=1.2e-14  Score=125.39  Aligned_cols=103  Identities=17%  Similarity=0.202  Sum_probs=83.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccC-CCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSS-YPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~-~~~~~d~  201 (241)
                      ++.+|||||||+|.++..+++.. . .+++|+|+|+.+++.|+++....++ .+++++++|+.+     .+. .+++||+
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~~fD~  136 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERAG-I-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG-----RHMDLGKEFDV  136 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHT-C-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT-----SCCCCSSCEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHCC-C-CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc-----cccCCCCCcCE
Confidence            46899999999999999988873 3 5899999999999999999887766 479999999976     222 3678999


Q ss_pred             EEEeCCCCc----hhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPH----FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~----~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+......+    ..+        ...+++++.++|||||.+++
T Consensus       137 v~~~~~l~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~  172 (298)
T 1ri5_A          137 ISSQFSFHYAFSTSES--------LDIAQRNIARHLRPGGYFIM  172 (298)
T ss_dssp             EEEESCGGGGGSSHHH--------HHHHHHHHHHTEEEEEEEEE
T ss_pred             EEECchhhhhcCCHHH--------HHHHHHHHHHhcCCCCEEEE
Confidence            987765432    222        24899999999999999875

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.57  E-value=2.6e-15  Score=131.34  Aligned_cols=106  Identities=15%  Similarity=0.079  Sum_probs=83.7

Q ss_pred             CCCcEEEEcCCccHHHHHHH-HHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLA-RRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la-~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+|||||||+|.++..++ ...++ .+|+|+|+|+.+++.|++++...++. +++++++|+.+     .+ ++++||.
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~-~~~~fD~  190 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPG-VQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK-----LD-TREGYDL  190 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTT-CEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG-----CC-CCSCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCC-CeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc-----CC-ccCCeEE
Confidence            46899999999999999996 55677 89999999999999999999887775 49999999986     23 2488999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+......+..+..     ....+++++.++|||||.+++
T Consensus       191 v~~~~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~i  225 (305)
T 3ocj_A          191 LTSNGLNIYEPDDA-----RVTELYRRFWQALKPGGALVT  225 (305)
T ss_dssp             EECCSSGGGCCCHH-----HHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECChhhhcCCHH-----HHHHHHHHHHHhcCCCeEEEE
Confidence            88755332221111     113589999999999999985

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.57  E-value=8.7e-15  Score=128.68  Aligned_cols=111  Identities=12%  Similarity=0.113  Sum_probs=78.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC------CEEEEEccccch-H-Hhhc-cC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS------NIHFLFANASVS-F-KQLV-SS  194 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~------ni~~~~~D~~~~-~-~~~~-~~  194 (241)
                      .+.+|||||||+|..+..+++.. . .+|+|+|+|+.|++.|+++....+..      ++++.+.|+... + ..+. ..
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~-~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-I-ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-C-SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-C-CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            46899999999998777666643 3 58999999999999999988776542      367888887321 0 1111 12


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++++||+|++.+...+.-...     -...++++++++|||||.+++
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~~-----~~~~~l~~~~r~LkpGG~~i~  167 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHPR-----HYATVMNNLSELTASGGKVLI  167 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCSTT-----THHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCeeEEEECchHHHhCCHH-----HHHHHHHHHHHHcCCCCEEEE
Confidence            467899998766432210000     015999999999999999975

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.56  E-value=4.5e-15  Score=124.51  Aligned_cols=102  Identities=15%  Similarity=0.126  Sum_probs=80.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ..+|||||||+|.++..+++.  + .+|+|+|+|+.+++.|+++....+. .+++++++|+.+     .. ++.+||+|+
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~--~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~-~~~~fD~v~  137 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASP--E-RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-----WR-PTELFDLIF  137 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBT--T-EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-----CC-CSSCEEEEE
T ss_pred             CCCEEEeCCCCCHHHHHHHhC--C-CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-----CC-CCCCeeEEE
Confidence            469999999999999999774  5 6899999999999999998875433 579999999986     22 356899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+...      .....+++++.++|||||.+++
T Consensus       138 ~~~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~~  169 (235)
T 3lcc_A          138 DYVFFCAIEP------EMRPAWAKSMYELLKPDGELIT  169 (235)
T ss_dssp             EESSTTTSCG------GGHHHHHHHHHHHEEEEEEEEE
T ss_pred             EChhhhcCCH------HHHHHHHHHHHHHCCCCcEEEE
Confidence            7654433220      0124899999999999999875

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.56  E-value=1.2e-14  Score=121.83  Aligned_cols=106  Identities=21%  Similarity=0.284  Sum_probs=82.7

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      ..+...++.+|||||||+|.++..+++...  .+++|+|+|+.+++.++++...   .+++++.+|+.+     .+..++
T Consensus        37 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~-----~~~~~~  106 (243)
T 3bkw_A           37 AMLPEVGGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPD---TGITYERADLDK-----LHLPQD  106 (243)
T ss_dssp             HHSCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGG-----CCCCTT
T ss_pred             HhccccCCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhh-----ccCCCC
Confidence            344444578999999999999999998733  3899999999999999876432   479999999976     233468


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++|+|+......+..+.        ..+++++.++|||||.+++
T Consensus       107 ~fD~v~~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~~  142 (243)
T 3bkw_A          107 SFDLAYSSLALHYVEDV--------ARLFRTVHQALSPGGHFVF  142 (243)
T ss_dssp             CEEEEEEESCGGGCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             CceEEEEeccccccchH--------HHHHHHHHHhcCcCcEEEE
Confidence            89999877654333222        4999999999999999875

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.56  E-value=1.4e-14  Score=131.89  Aligned_cols=113  Identities=14%  Similarity=0.061  Sum_probs=82.8

Q ss_pred             hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHH-------HHhCC--CCEEEEEccccc
Q 026219          116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWV-------QELAL--SNIHFLFANASV  186 (241)
Q Consensus       116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~-------~~~~l--~ni~~~~~D~~~  186 (241)
                      +.+.....++.+|||||||+|..++.++...+. .+++|||+|+.+++.|++++       +..|+  .+++|+++|+.+
T Consensus       165 il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~-~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~  243 (438)
T 3uwp_A          165 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNC-KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  243 (438)
T ss_dssp             HHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTS
T ss_pred             HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccC
Confidence            334444445789999999999999999988765 57999999999999998764       33455  579999999987


Q ss_pred             hHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          187 SFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       187 ~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      . +.. +. -..+|+|+++..--++ +.        ...|+++++.|||||+|++
T Consensus       244 l-p~~-d~-~~~aDVVf~Nn~~F~p-dl--------~~aL~Ei~RvLKPGGrIVs  286 (438)
T 3uwp_A          244 E-EWR-ER-IANTSVIFVNNFAFGP-EV--------DHQLKERFANMKEGGRIVS  286 (438)
T ss_dssp             H-HHH-HH-HHTCSEEEECCTTCCH-HH--------HHHHHHHHTTSCTTCEEEE
T ss_pred             C-ccc-cc-cCCccEEEEcccccCc-hH--------HHHHHHHHHcCCCCcEEEE
Confidence            3 110 00 0357888876432122 11        3777899999999999974

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.56  E-value=1.9e-14  Score=121.29  Aligned_cols=105  Identities=16%  Similarity=0.178  Sum_probs=85.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCC--CcEeE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYP--GPLML  201 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~--~~~d~  201 (241)
                      +.+|||||||+|..+..+++..+..++++++|+|+++++.|+++++..++. +++++.+|+.+.++.+.. .+  +.||.
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~-~~~~~~fD~  151 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDL  151 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHT-SSSCCCEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh-cCCCCCcCE
Confidence            578999999999999999998863279999999999999999999988884 699999999775544321 12  68999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++....+.           +..+++++.++|+|||.|++
T Consensus       152 V~~d~~~~~-----------~~~~l~~~~~~LkpgG~lv~  180 (232)
T 3cbg_A          152 IFIDADKRN-----------YPRYYEIGLNLLRRGGLMVI  180 (232)
T ss_dssp             EEECSCGGG-----------HHHHHHHHHHTEEEEEEEEE
T ss_pred             EEECCCHHH-----------HHHHHHHHHHHcCCCeEEEE
Confidence            887653221           25899999999999999875

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.56  E-value=2e-14  Score=123.94  Aligned_cols=99  Identities=23%  Similarity=0.300  Sum_probs=85.4

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHH-CCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEe
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~-~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      .++.+|||+|||+|.++..+++. .|. .+|+++|+|+.+++.|+++++..++ ++++++.+|+.+.    +  .++.+|
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~~~~D  183 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG----F--DEKDVD  183 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC----C--SCCSEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc----c--cCCccC
Confidence            34679999999999999999998 566 7999999999999999999998887 6899999999762    2  356899


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+++.++++             .+++++.++|+|||.+++
T Consensus       184 ~V~~~~~~~~-------------~~l~~~~~~L~pgG~l~~  211 (277)
T 1o54_A          184 ALFLDVPDPW-------------NYIDKCWEALKGGGRFAT  211 (277)
T ss_dssp             EEEECCSCGG-------------GTHHHHHHHEEEEEEEEE
T ss_pred             EEEECCcCHH-------------HHHHHHHHHcCCCCEEEE
Confidence            9998776653             788999999999999875

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.56  E-value=1.1e-14  Score=126.58  Aligned_cols=109  Identities=13%  Similarity=0.090  Sum_probs=78.5

Q ss_pred             CCCcEEEEcCCccHHHHH----HHHHCCCCcEE--EEEeCCHHHHHHHHHHHHHh-CCCCEEE--EEccccchHHhh-cc
Q 026219          124 TLPLMVDIGSGSGRFLIW----LARRNPDSGNY--LGLEIRQKLVKRAEFWVQEL-ALSNIHF--LFANASVSFKQL-VS  193 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~----la~~~p~~~~v--~giDis~~~v~~a~~~~~~~-~l~ni~~--~~~D~~~~~~~~-~~  193 (241)
                      ++.+|||||||+|.++..    ++.++++ ..+  +|+|+|++|++.|+++++.. +++++++  ..+|+.+....+ .+
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~-~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPG-VCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTT-CEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCC-ceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            356899999999986653    4455566 644  99999999999999988653 5566655  455554321111 11


Q ss_pred             CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+++||.|+......|.++.        ..++++++++|||||++++
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~i  170 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDI--------PATLKFFHSLLGTNAKMLI  170 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCH--------HHHHHHHHHTEEEEEEEEE
T ss_pred             cCCCceeEEEEeeeeeecCCH--------HHHHHHHHHHcCCCcEEEE
Confidence            246889999887766555444        4899999999999999875

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.56  E-value=1.2e-14  Score=121.69  Aligned_cols=100  Identities=16%  Similarity=0.218  Sum_probs=82.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.  + .+++|+|+|+.+++.++++....+. +++++++|+.+     .+ .++.+|+|+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~-----~~-~~~~fD~v~  106 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--F-KNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISN-----LN-INRKFDLIT  106 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--S-SEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGG-----CC-CSCCEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--C-CcEEEEECCHHHHHHHHHHHhhcCC-CeEEEeccccc-----CC-ccCCceEEE
Confidence            4689999999999999999987  4 5799999999999999999887765 79999999976     22 237899998


Q ss_pred             EeC-CCCch---hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILC-PDPHF---KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~-~~~~~---~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ... ...+.   .+.        ..+++++.++|||||.+++
T Consensus       107 ~~~~~l~~~~~~~~~--------~~~l~~~~~~L~pgG~l~~  140 (246)
T 1y8c_A          107 CCLDSTNYIIDSDDL--------KKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             ECTTGGGGCCSHHHH--------HHHHHHHHTTEEEEEEEEE
T ss_pred             EcCccccccCCHHHH--------HHHHHHHHHhcCCCcEEEE
Confidence            765 43333   222        4899999999999999875

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.56  E-value=1.2e-14  Score=126.61  Aligned_cols=110  Identities=15%  Similarity=0.171  Sum_probs=83.2

Q ss_pred             hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC---CCEEEEEccccchHHhhc
Q 026219          116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL---SNIHFLFANASVSFKQLV  192 (241)
Q Consensus       116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l---~ni~~~~~D~~~~~~~~~  192 (241)
                      +.+.+.. .+.+|||||||+|.++..+++.  + .+|+|+|+|+.+++.|++++...+.   .+++++++|+.+     +
T Consensus        75 ~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~--~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-----~  145 (299)
T 3g2m_A           75 FATRTGP-VSGPVLELAAGMGRLTFPFLDL--G-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA-----F  145 (299)
T ss_dssp             HHHHHCC-CCSCEEEETCTTTTTHHHHHTT--T-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB-----C
T ss_pred             HHHhhCC-CCCcEEEEeccCCHHHHHHHHc--C-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc-----C
Confidence            3344443 3459999999999999999997  4 5799999999999999999887653   589999999986     2


Q ss_pred             cCCCCcEeEEEEeCC-CCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          193 SSYPGPLMLVSILCP-DPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       193 ~~~~~~~d~V~~~~~-~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      + ++++||.|++.+. ..+...      .....+++++.++|||||.|+|
T Consensus       146 ~-~~~~fD~v~~~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~l~~  188 (299)
T 3g2m_A          146 A-LDKRFGTVVISSGSINELDE------ADRRGLYASVREHLEPGGKFLL  188 (299)
T ss_dssp             C-CSCCEEEEEECHHHHTTSCH------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             C-cCCCcCEEEECCcccccCCH------HHHHHHHHHHHHHcCCCcEEEE
Confidence            3 2688998875321 111110      0114999999999999999985

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.55  E-value=2.5e-14  Score=119.47  Aligned_cols=103  Identities=18%  Similarity=0.195  Sum_probs=81.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.++..+++.. +. .+|+|+|+|+.+++.++++++..  +|++++.+|+.+.. . ....+.++|.|
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~-~-~~~~~~~~D~v  147 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPE-E-YRALVPKVDVI  147 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGG-G-GTTTCCCEEEE
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcc-h-hhcccCCceEE
Confidence            46799999999999999999885 55 68999999999999999887644  68999999997621 1 11124689999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..+.++.  .        ..+++++.++|||||.+++
T Consensus       148 ~~~~~~~~~--~--------~~~l~~~~~~LkpgG~l~~  176 (227)
T 1g8a_A          148 FEDVAQPTQ--A--------KILIDNAEVYLKRGGYGMI  176 (227)
T ss_dssp             EECCCSTTH--H--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EECCCCHhH--H--------HHHHHHHHHhcCCCCEEEE
Confidence            887664421  1        2569999999999999875

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.55  E-value=4.4e-14  Score=113.54  Aligned_cols=103  Identities=18%  Similarity=0.293  Sum_probs=84.3

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCc
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ....++.+|||+|||+|.++..+++..   .+++|+|+|+.+++.++++++..+. .+++++.+|+.+.++.     ...
T Consensus        29 ~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~  100 (192)
T 1l3i_A           29 AEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-----IPD  100 (192)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-----SCC
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-----CCC
Confidence            334457899999999999999999875   4799999999999999999998887 6899999998752211     157


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|+...+..+.           ..+++++.++|+|||.+++
T Consensus       101 ~D~v~~~~~~~~~-----------~~~l~~~~~~l~~gG~l~~  132 (192)
T 1l3i_A          101 IDIAVVGGSGGEL-----------QEILRIIKDKLKPGGRIIV  132 (192)
T ss_dssp             EEEEEESCCTTCH-----------HHHHHHHHHTEEEEEEEEE
T ss_pred             CCEEEECCchHHH-----------HHHHHHHHHhcCCCcEEEE
Confidence            9998876553322           5899999999999999875

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.55  E-value=1.6e-14  Score=119.45  Aligned_cols=103  Identities=19%  Similarity=0.311  Sum_probs=83.1

Q ss_pred             HhcCCCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219          119 VYKNPTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      .....++.+|||||||+|.++..+++.. +. .+|+|+|+|+.+++.++++....+.++++++.+|+.+.++     .++
T Consensus        72 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~  145 (215)
T 2yxe_A           72 LLDLKPGMKVLEIGTGCGYHAAVTAEIVGED-GLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-----PLA  145 (215)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-----GGC
T ss_pred             hhCCCCCCEEEEECCCccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-----CCC
Confidence            3333457899999999999999999987 54 6899999999999999999998888889999999864211     146


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .||.|+.....++.              .+++.++|||||++++
T Consensus       146 ~fD~v~~~~~~~~~--------------~~~~~~~L~pgG~lv~  175 (215)
T 2yxe_A          146 PYDRIYTTAAGPKI--------------PEPLIRQLKDGGKLLM  175 (215)
T ss_dssp             CEEEEEESSBBSSC--------------CHHHHHTEEEEEEEEE
T ss_pred             CeeEEEECCchHHH--------------HHHHHHHcCCCcEEEE
Confidence            79999877654432              2478999999999875

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.55  E-value=8.1e-14  Score=111.28  Aligned_cols=100  Identities=10%  Similarity=0.090  Sum_probs=82.6

Q ss_pred             HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCc
Q 026219          119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      .+...++.+|||+|||+|.++..+++  +. .+++|+|+|+.+++.++++++..++++++++.+|+.+.    ++  ++.
T Consensus        30 ~~~~~~~~~vLdiG~G~G~~~~~l~~--~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~~--~~~  100 (183)
T 2yxd_A           30 KLNLNKDDVVVDVGCGSGGMTVEIAK--RC-KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV----LD--KLE  100 (183)
T ss_dssp             HHCCCTTCEEEEESCCCSHHHHHHHT--TS-SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH----GG--GCC
T ss_pred             HcCCCCCCEEEEeCCCCCHHHHHHHh--cC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc----cc--CCC
Confidence            34444568999999999999999998  45 78999999999999999999998888899999999752    22  367


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|+...+ ...           ..+++++.++  |||.+++
T Consensus       101 ~D~i~~~~~-~~~-----------~~~l~~~~~~--~gG~l~~  129 (183)
T 2yxd_A          101 FNKAFIGGT-KNI-----------EKIIEILDKK--KINHIVA  129 (183)
T ss_dssp             CSEEEECSC-SCH-----------HHHHHHHHHT--TCCEEEE
T ss_pred             CcEEEECCc-ccH-----------HHHHHHHhhC--CCCEEEE
Confidence            999888766 211           4899999998  9999875

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.55  E-value=1.6e-14  Score=124.78  Aligned_cols=112  Identities=16%  Similarity=0.084  Sum_probs=81.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC----CCEEEEEccccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL----SNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l----~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      ++.+|||||||+|.++..+++.  + .+|+|+|+|+.|++.|+++....+.    .++.+..+|+.+....+  ..+++|
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~--~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~f  131 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEE--G-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV--PAGDGF  131 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS--CCTTCE
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--C-CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc--ccCCCe
Confidence            4679999999999999999998  4 5799999999999999998755432    36889999997632222  346899


Q ss_pred             eEEEEe-CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSIL-CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~-~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|++. ....+..+.. ........++++++++|||||.+++
T Consensus       132 D~V~~~g~~l~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~~  173 (293)
T 3thr_A          132 DAVICLGNSFAHLPDSK-GDQSEHRLALKNIASMVRPGGLLVI  173 (293)
T ss_dssp             EEEEECTTCGGGSCCSS-SSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEEcChHHhhcCccc-cCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            999875 3322222100 0000125899999999999999975

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.55  E-value=7.1e-15  Score=130.08  Aligned_cols=108  Identities=12%  Similarity=0.156  Sum_probs=86.0

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL  205 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~  205 (241)
                      .+|||||||+|.++..+++.+|+ .++++||+++.+++.|++++.....++++++.+|+.+++..   ..+++||+|++.
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~-~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~---~~~~~fDvIi~D  166 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQ-SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAES---FTPASRDVIIRD  166 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTT-CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHT---CCTTCEEEEEEC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCC-cEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhh---ccCCCCCEEEEC
Confidence            48999999999999999999888 79999999999999999987543335899999999875432   135789999887


Q ss_pred             CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          206 CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       206 ~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+++..    ...+....+++++.++|+|||.+++
T Consensus       167 ~~~~~~~----~~~L~t~efl~~~~r~LkpgGvlv~  198 (317)
T 3gjy_A          167 VFAGAIT----PQNFTTVEFFEHCHRGLAPGGLYVA  198 (317)
T ss_dssp             CSTTSCC----CGGGSBHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCcccc----chhhhHHHHHHHHHHhcCCCcEEEE
Confidence            6554211    1123446999999999999999874

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.55  E-value=5.8e-14  Score=121.40  Aligned_cols=118  Identities=17%  Similarity=0.149  Sum_probs=88.7

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+|||+|..+..+++..++.+.|+|+|+|+.+++.++++++..+++|++++.+|+.+..... ...++.||.|
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~-~~~~~~fD~V  160 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYL-LKNEIFFDKI  160 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-HHTTCCEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhh-hhccccCCEE
Confidence            357899999999999999999986543689999999999999999999999889999999997632211 1124679999


Q ss_pred             EEeCCCCc----------hhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPH----------FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~----------~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..|-..          ......+....+..+++++.++|||||++++
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~  209 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVY  209 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            87643210          0001111113457999999999999999874

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.54  E-value=8.3e-15  Score=125.24  Aligned_cols=101  Identities=15%  Similarity=0.192  Sum_probs=79.4

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      +.+...++.+|||||||+|.++..+++  ++ .+|+|+|+|+.|++.++++.      |++++++|+.+     .+.+++
T Consensus        28 ~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~-~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~-----~~~~~~   93 (261)
T 3ege_A           28 NLLNLPKGSVIADIGAGTGGYSVALAN--QG-LFVYAVEPSIVMRQQAVVHP------QVEWFTGYAEN-----LALPDK   93 (261)
T ss_dssp             HHHCCCTTCEEEEETCTTSHHHHHHHT--TT-CEEEEECSCHHHHHSSCCCT------TEEEECCCTTS-----CCSCTT
T ss_pred             HHhCCCCCCEEEEEcCcccHHHHHHHh--CC-CEEEEEeCCHHHHHHHHhcc------CCEEEECchhh-----CCCCCC
Confidence            334434578999999999999999998  45 78999999999999875432      89999999976     334568


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +||.|+......+..+.        ..+++++.++|| ||.+++
T Consensus        94 ~fD~v~~~~~l~~~~~~--------~~~l~~~~~~Lk-gG~~~~  128 (261)
T 3ege_A           94 SVDGVISILAIHHFSHL--------EKSFQEMQRIIR-DGTIVL  128 (261)
T ss_dssp             CBSEEEEESCGGGCSSH--------HHHHHHHHHHBC-SSCEEE
T ss_pred             CEeEEEEcchHhhccCH--------HHHHHHHHHHhC-CcEEEE
Confidence            99999877654333332        499999999999 997654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.54  E-value=1.4e-14  Score=119.45  Aligned_cols=97  Identities=13%  Similarity=0.028  Sum_probs=77.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.  + .+++|+|+|+.+++.++++.      ++.++.+|+.+     .+ .+++||.|+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~-----~~-~~~~fD~v~  107 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAA--G-FDVDATDGSPELAAEASRRL------GRPVRTMLFHQ-----LD-AIDAYDAVW  107 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHH------TSCCEECCGGG-----CC-CCSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHc--C-CeEEEECCCHHHHHHHHHhc------CCceEEeeecc-----CC-CCCcEEEEE
Confidence            4679999999999999999987  4 58999999999999998876      46788889875     23 578999998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+....      -...+++++.++|||||.+++
T Consensus       108 ~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~  139 (211)
T 3e23_A          108 AHACLLHVPRD------ELADVLKLIWRALKPGGLFYA  139 (211)
T ss_dssp             ECSCGGGSCHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             ecCchhhcCHH------HHHHHHHHHHHhcCCCcEEEE
Confidence            76544333200      114899999999999999975

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.54  E-value=1.8e-15  Score=127.35  Aligned_cols=99  Identities=15%  Similarity=0.042  Sum_probs=76.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.++..+++.  + .+|+|+|+|+.+++.|+++++..++ .+++++++|+.+..      .+.+||.|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~--~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v  148 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT--G-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA------SFLKADVV  148 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG------GGCCCSEE
T ss_pred             CCCEEEECccccCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc------ccCCCCEE
Confidence            4689999999999999999997  3 5899999999999999999999988 58999999997631      25789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV  239 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l  239 (241)
                      +++.+-.+.....        ..+.++.++|+|||.+
T Consensus       149 ~~~~~~~~~~~~~--------~~~~~~~~~L~pgG~~  177 (241)
T 3gdh_A          149 FLSPPWGGPDYAT--------AETFDIRTMMSPDGFE  177 (241)
T ss_dssp             EECCCCSSGGGGG--------SSSBCTTTSCSSCHHH
T ss_pred             EECCCcCCcchhh--------hHHHHHHhhcCCccee
Confidence            8876544332221        2333455666666653

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.54  E-value=3.4e-15  Score=126.96  Aligned_cols=116  Identities=16%  Similarity=0.121  Sum_probs=77.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCC-CCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSY-PGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~-~~~~d~  201 (241)
                      ++.+|||+|||+|.++..++++.++ .+|+|+|+|+.|++.|+++++.+++.+ ++++++|+.+.+...+... +..||.
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNG-WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence            3578999999999999999998776 799999999999999999999988864 9999999865211111111 257999


Q ss_pred             EEEeCCCCchh-h------hhhhcccchHHHHHHHHhccccCCEEE
Q 026219          202 VSILCPDPHFK-K------KHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~~~~~~~~~~-~------~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |+.+.|-.... .      +...+..-...++.+++++|||||.+.
T Consensus       144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~  189 (254)
T 2h00_A          144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELE  189 (254)
T ss_dssp             EEECCCCC-------------------------CTTTTHHHHTHHH
T ss_pred             EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEE
Confidence            98875432111 0      000001112356778888888888653

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.54  E-value=3.7e-14  Score=126.89  Aligned_cols=105  Identities=14%  Similarity=0.203  Sum_probs=82.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.++..+++. +. .+|+|+|+|+ +++.|+++++.+++.+ ++++++|+.+     .+.++++||+|
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g~-~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~fD~I  137 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-GA-RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEE-----VELPVEKVDII  137 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-TC-SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTT-----CCCSSSCEEEE
T ss_pred             CCCEEEEEeccchHHHHHHHHC-CC-CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHH-----ccCCCCceEEE
Confidence            3689999999999999999997 34 5899999995 9999999999988865 9999999986     33346889999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.........     .....+.+++++.++|||||.+++
T Consensus       138 is~~~~~~l~-----~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          138 ISEWMGYCLF-----YESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             EECCCBBTBT-----BTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EEcccccccc-----CchhHHHHHHHHHHhCCCCCEEcc
Confidence            8753211100     001225899999999999999863

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.54  E-value=1.2e-14  Score=115.76  Aligned_cols=98  Identities=13%  Similarity=0.157  Sum_probs=78.9

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      +...++.+|||||||+|.++..+++..   .+++|+|+|+.+++.++++     .++++++.+| ..       ..++++
T Consensus        13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~-------~~~~~~   76 (170)
T 3i9f_A           13 IFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----FDSVITLSDP-KE-------IPDNSV   76 (170)
T ss_dssp             HHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----CTTSEEESSG-GG-------SCTTCE
T ss_pred             cCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CC-------CCCCce
Confidence            333346799999999999999999985   3799999999999999886     4689999998 22       246889


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|+......+..+.        ..+++++.++|||||.+++
T Consensus        77 D~v~~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~~  110 (170)
T 3i9f_A           77 DFILFANSFHDMDDK--------QHVISEVKRILKDDGRVII  110 (170)
T ss_dssp             EEEEEESCSTTCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEccchhcccCH--------HHHHHHHHHhcCCCCEEEE
Confidence            999877655444332        4999999999999999875

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.54  E-value=1.7e-14  Score=118.81  Aligned_cols=94  Identities=14%  Similarity=0.192  Sum_probs=76.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSG-NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~-~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.++..+     + . +++|+|+|+.+++.++++.     .+++++++|+.+     .+..+++||.|
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~-~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~-----~~~~~~~fD~v   99 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----P-YPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEA-----LPFPGESFDVV   99 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----C-CSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTS-----CCSCSSCEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC-----C-CCeEEEEeCCHHHHHHHHHhC-----CCcEEEEccccc-----CCCCCCcEEEE
Confidence            4789999999999999887     3 4 8999999999999998765     578999999976     33346789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......+..+.        ..+++++.++|||||.+++
T Consensus       100 ~~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~i  130 (211)
T 2gs9_A          100 LLFTTLEFVEDV--------ERVLLEARRVLRPGGALVV  130 (211)
T ss_dssp             EEESCTTTCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEcChhhhcCCH--------HHHHHHHHHHcCCCCEEEE
Confidence            887655444332        4999999999999999875

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.54  E-value=1.9e-14  Score=126.97  Aligned_cols=103  Identities=17%  Similarity=0.227  Sum_probs=83.2

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      ....++.+|||||||+|.++..+++..+...+|+|+|+|+++++.|+++++..++++++++.+|+.+..+     .++.|
T Consensus        71 l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~-----~~~~f  145 (317)
T 1dl5_A           71 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-----EFSPY  145 (317)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCE
T ss_pred             cCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc-----cCCCe
Confidence            3334578999999999999999999875226899999999999999999999898889999999976211     24789


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|+...+.++.              .+++.++|||||++++
T Consensus       146 D~Iv~~~~~~~~--------------~~~~~~~LkpgG~lvi  173 (317)
T 1dl5_A          146 DVIFVTVGVDEV--------------PETWFTQLKEGGRVIV  173 (317)
T ss_dssp             EEEEECSBBSCC--------------CHHHHHHEEEEEEEEE
T ss_pred             EEEEEcCCHHHH--------------HHHHHHhcCCCcEEEE
Confidence            999887654432              1467889999999875

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=2.4e-14  Score=120.67  Aligned_cols=105  Identities=16%  Similarity=0.161  Sum_probs=77.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHh-hccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQ-LVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~-~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.++..+++.++   +|+|+|+|+.+++.|+++.   ...+++++++|+.+.... .++ ....+|.|
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~-~~~~~d~v  128 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIH-SEIGDANI  128 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHH-HHHCSCEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccc-cccCccEE
Confidence            467899999999999999999866   4999999999999998876   335899999999863211 110 01237888


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......+....      ....+++++.++|||||.+++
T Consensus       129 ~~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i  161 (245)
T 3ggd_A          129 YMRTGFHHIPVE------KRELLGQSLRILLGKQGAMYL  161 (245)
T ss_dssp             EEESSSTTSCGG------GHHHHHHHHHHHHTTTCEEEE
T ss_pred             EEcchhhcCCHH------HHHHHHHHHHHHcCCCCEEEE
Confidence            766544333210      114999999999999998764

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.53  E-value=3.2e-14  Score=121.77  Aligned_cols=110  Identities=16%  Similarity=0.117  Sum_probs=83.4

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHH------HHHHHHHHHHHhCC-CCEEEEEcc-ccchHHh
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQK------LVKRAEFWVQELAL-SNIHFLFAN-ASVSFKQ  190 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~------~v~~a~~~~~~~~l-~ni~~~~~D-~~~~~~~  190 (241)
                      ....++.+|||||||+|.++..+++++ +. .+|+|+|+|+.      +++.|+++++..++ ++++++.+| ...   .
T Consensus        39 ~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~-~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~  114 (275)
T 3bkx_A           39 WQVKPGEKILEIGCGQGDLSAVLADQVGSS-GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD---D  114 (275)
T ss_dssp             HTCCTTCEEEEESCTTSHHHHHHHHHHCTT-CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT---C
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh---c
Confidence            333457899999999999999999985 65 79999999997      99999999987776 579999998 321   0


Q ss_pred             hccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          191 LVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       191 ~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+..+++||.|+......+..+.        ..+++.+.++++|||.+++
T Consensus       115 ~~~~~~~~fD~v~~~~~l~~~~~~--------~~~~~~~~~l~~~gG~l~~  157 (275)
T 3bkx_A          115 LGPIADQHFDRVVLAHSLWYFASA--------NALALLFKNMAAVCDHVDV  157 (275)
T ss_dssp             CGGGTTCCCSEEEEESCGGGSSCH--------HHHHHHHHHHTTTCSEEEE
T ss_pred             cCCCCCCCEEEEEEccchhhCCCH--------HHHHHHHHHHhCCCCEEEE
Confidence            122246889999876554333222        3677777788888999875

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.53  E-value=1e-14  Score=120.05  Aligned_cols=100  Identities=16%  Similarity=0.218  Sum_probs=80.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ...+|||||||+|.+++.++...|+ .+++|+|+|+.|++.++++++.+|.. ++++  +|..+   .   .+++.+|.|
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~-a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~---~---~~~~~~DvV  119 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEK-IIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKES---D---VYKGTYDVV  119 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCC-CEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHH---H---HTTSEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccc---c---CCCCCcChh
Confidence            3689999999999999999999998 79999999999999999999998886 5666  56643   1   146889998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ...-.-+..++++        ..+.++++.|+|||.|+
T Consensus       120 La~k~LHlL~~~~--------~al~~v~~~L~pggvfI  149 (200)
T 3fzg_A          120 FLLKMLPVLKQQD--------VNILDFLQLFHTQNFVI  149 (200)
T ss_dssp             EEETCHHHHHHTT--------CCHHHHHHTCEEEEEEE
T ss_pred             hHhhHHHhhhhhH--------HHHHHHHHHhCCCCEEE
Confidence            7765555443332        55558999999999886

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.53  E-value=1.3e-14  Score=123.70  Aligned_cols=99  Identities=17%  Similarity=0.228  Sum_probs=78.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++..   .+|+|+|+|+.+++.|+++.     .+++++++|+.+     .+ .+++||+|+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~-----~~-~~~~fD~v~  115 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRN-----PDAVLHHGDMRD-----FS-LGRRFSAVT  115 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTT-----CC-CSCCEEEEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC-----CCCEEEECChHH-----CC-ccCCcCEEE
Confidence            46899999999999999999873   47999999999999998764     378999999976     22 268899998


Q ss_pred             EeC-CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILC-PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~-~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.. ...+.....     ....+++++.++|||||.++|
T Consensus       116 ~~~~~l~~~~~~~-----~~~~~l~~~~~~L~pgG~l~i  149 (263)
T 3pfg_A          116 CMFSSIGHLAGQA-----ELDAALERFAAHVLPDGVVVV  149 (263)
T ss_dssp             ECTTGGGGSCHHH-----HHHHHHHHHHHTEEEEEEEEE
T ss_pred             EcCchhhhcCCHH-----HHHHHHHHHHHhcCCCcEEEE
Confidence            775 333331100     114889999999999999985

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.53  E-value=1.6e-14  Score=118.59  Aligned_cols=107  Identities=10%  Similarity=0.091  Sum_probs=80.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++..+.  +++|+|+|+.+++.++++...  ..+++++.+|+.+     .+..+++||.|+
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~-----~~~~~~~fD~v~  112 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRK-----LDFPSASFDVVL  112 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTS-----CCSCSSCEEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhc-----CCCCCCcccEEE
Confidence            4689999999999999999998543  699999999999999987653  3589999999976     233467899998


Q ss_pred             EeCCC---------CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPD---------PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~---------~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ...+.         +|....  +.......+++++.++|||||.+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~li~  157 (215)
T 2pxx_A          113 EKGTLDALLAGERDPWTVSS--EGVHTVDQVLSEVSRVLVPGGRFIS  157 (215)
T ss_dssp             EESHHHHHTTTCSCTTSCCH--HHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ECcchhhhcccccccccccc--chhHHHHHHHHHHHHhCcCCCEEEE
Confidence            65321         221100  0011225899999999999999875

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.53  E-value=7e-14  Score=118.65  Aligned_cols=103  Identities=17%  Similarity=0.185  Sum_probs=77.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.++..+++.. +. +.|+|+|+|+.|++...+.+++.  .|+.++.+|+....  .....++.||.|
T Consensus        76 ~g~~VLDlG~GtG~~t~~la~~v~~~-G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~--~~~~~~~~~D~I  150 (232)
T 3id6_C           76 KGTKVLYLGAASGTTISHVSDIIELN-GKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQ--SYKSVVENVDVL  150 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHTTT-SEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGG--GTTTTCCCEEEE
T ss_pred             CCCEEEEEeecCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccch--hhhccccceEEE
Confidence            47899999999999999999875 45 89999999999987665555443  68999999997521  111234689999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..+.|+.  .        +.+++.+.+.|||||+|++
T Consensus       151 ~~d~a~~~~--~--------~il~~~~~~~LkpGG~lvi  179 (232)
T 3id6_C          151 YVDIAQPDQ--T--------DIAIYNAKFFLKVNGDMLL  179 (232)
T ss_dssp             EECCCCTTH--H--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EecCCChhH--H--------HHHHHHHHHhCCCCeEEEE
Confidence            888765432  1        2455666779999999875

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.53  E-value=2.5e-14  Score=120.47  Aligned_cols=98  Identities=19%  Similarity=0.145  Sum_probs=76.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.  + .+|+|+|+|+.+++.++++        ++++.+|+.+.+.   +.++++||.|+
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~--~-~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~---~~~~~~fD~i~  106 (240)
T 3dli_A           41 GCRRVLDIGCGRGEFLELCKEE--G-IESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLK---SLPDKYLDGVM  106 (240)
T ss_dssp             TCSCEEEETCTTTHHHHHHHHH--T-CCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHH---TSCTTCBSEEE
T ss_pred             CCCeEEEEeCCCCHHHHHHHhC--C-CcEEEEECCHHHHHHHHhh--------cceeeccHHHHhh---hcCCCCeeEEE
Confidence            3689999999999999999998  3 4699999999999998753        7889999876321   33468999998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+....      ....+++++.++|||||.+++
T Consensus       107 ~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~  138 (240)
T 3dli_A          107 ISHFVEHLDPE------RLFELLSLCYSKMKYSSYIVI  138 (240)
T ss_dssp             EESCGGGSCGG------GHHHHHHHHHHHBCTTCCEEE
T ss_pred             ECCchhhCCcH------HHHHHHHHHHHHcCCCcEEEE
Confidence            76544333211      114999999999999999875

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.53  E-value=9.4e-14  Score=116.92  Aligned_cols=98  Identities=20%  Similarity=0.293  Sum_probs=83.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||+|||+|.++..+++.  . .+++|+|+++++++.|+++.+..++ .+++++.+|+.+.    . ..+..+|.
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~--~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~-~~~~~~D~  161 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV--A-GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA----E-VPEGIFHA  161 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--S-SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS----C-CCTTCBSE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh--C-CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhc----c-cCCCcccE
Confidence            34689999999999999999998  4 6899999999999999999988887 6899999999762    1 12467999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+.+.+++             ..+++++.++|+|||.+++
T Consensus       162 v~~~~~~~-------------~~~l~~~~~~L~~gG~l~~  188 (248)
T 2yvl_A          162 AFVDVREP-------------WHYLEKVHKSLMEGAPVGF  188 (248)
T ss_dssp             EEECSSCG-------------GGGHHHHHHHBCTTCEEEE
T ss_pred             EEECCcCH-------------HHHHHHHHHHcCCCCEEEE
Confidence            98876655             2788999999999999875

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.53  E-value=4.7e-14  Score=124.61  Aligned_cols=113  Identities=18%  Similarity=0.178  Sum_probs=88.5

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH--hC---CCCEEEEEccccchHHhhccCCCC
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE--LA---LSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~--~~---l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      ++..+|||||||+|..+..+++..+. .+|++||+++.+++.|++++..  .+   .++++++.+|+.+.++.    .++
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~  150 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTV-EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER----TEE  150 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTC-CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH----CCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh----cCC
Confidence            34689999999999999999997666 7999999999999999998764  22   35899999999864332    357


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +||+|++..++++.... ....+....+++++.++|||||.+++
T Consensus       151 ~fD~Ii~d~~~~~~~~~-~~~~l~~~~~l~~~~~~LkpgG~lv~  193 (314)
T 1uir_A          151 RYDVVIIDLTDPVGEDN-PARLLYTVEFYRLVKAHLNPGGVMGM  193 (314)
T ss_dssp             CEEEEEEECCCCBSTTC-GGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred             CccEEEECCCCcccccC-cchhccHHHHHHHHHHhcCCCcEEEE
Confidence            89999998877651000 01123357999999999999999875

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.53  E-value=3.3e-14  Score=126.76  Aligned_cols=111  Identities=22%  Similarity=0.313  Sum_probs=87.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL--AL--SNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~--~l--~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++..+|||||||+|.++..+++..+. .+|++||+|+.+++.|++++...  ++  ++++++.+|+.+.++..   .++.
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~-~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~---~~~~  194 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASI-EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA---AEGS  194 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS---CTTC
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc---cCCC
Confidence            34689999999999999999997666 79999999999999999988653  33  57999999998643221   2578


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||+|++..++|+...    .......+++++.++|+|||.+++
T Consensus       195 fDlIi~d~~~p~~~~----~~l~~~~~l~~~~~~LkpgG~lv~  233 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPA----KELFEKPFFQSVARALRPGGVVCT  233 (334)
T ss_dssp             EEEEEECCCCTTSGG----GGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred             ccEEEECCCCccCcc----hhhhHHHHHHHHHHhcCCCcEEEE
Confidence            999998776654211    113357999999999999999875

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.53  E-value=4.7e-14  Score=125.09  Aligned_cols=105  Identities=18%  Similarity=0.241  Sum_probs=82.4

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHH-CCCCcEEEEEeCCHHHHHHHHHHHHHhC-----------CCCEEEEEccccch
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQELA-----------LSNIHFLFANASVS  187 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~-~p~~~~v~giDis~~~v~~a~~~~~~~~-----------l~ni~~~~~D~~~~  187 (241)
                      +...++.+|||+|||+|.++..+++. .+. .+|+|+|+++.+++.|+++++..+           ..+++++.+|+.+.
T Consensus       101 l~~~~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~  179 (336)
T 2b25_A          101 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA  179 (336)
T ss_dssp             HTCCTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred             cCCCCCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHc
Confidence            33345789999999999999999998 465 799999999999999999988643           25899999999863


Q ss_pred             HHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          188 FKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       188 ~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..   +..++.||.|+++.++++             .+++++.++|||||.+++
T Consensus       180 ~~---~~~~~~fD~V~~~~~~~~-------------~~l~~~~~~LkpgG~lv~  217 (336)
T 2b25_A          180 TE---DIKSLTFDAVALDMLNPH-------------VTLPVFYPHLKHGGVCAV  217 (336)
T ss_dssp             C----------EEEEEECSSSTT-------------TTHHHHGGGEEEEEEEEE
T ss_pred             cc---ccCCCCeeEEEECCCCHH-------------HHHHHHHHhcCCCcEEEE
Confidence            21   113467999998877663             578999999999999874

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.53  E-value=8.7e-14  Score=121.21  Aligned_cols=108  Identities=16%  Similarity=0.152  Sum_probs=82.5

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcE---e
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPL---M  200 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~---d  200 (241)
                      +.+|||+|||+|.+++.+++. ++ .+|+|+|+|+++++.|++|++.+++.+ ++++++|+.+.+       ++.|   |
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~-~~-~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~-------~~~f~~~D  194 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKF-SD-AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-------KEKFASIE  194 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH-SS-CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-------GGGTTTCC
T ss_pred             CCEEEEEeCchhHHHHHHHHC-CC-CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-------ccccCCCC
Confidence            578999999999999999999 87 899999999999999999999998865 999999998632       1356   9


Q ss_pred             EEEEeCCCCchhhh---h--hhccc------chHHHHHHHH-hccccCCEEEc
Q 026219          201 LVSILCPDPHFKKK---H--HKRRV------VQKPLVDSII-DYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~---~--~~~r~------~~~~ll~~l~-r~LkpGG~l~~  241 (241)
                      +|+.+.|-......   .  ++...      -...+++++. +.|+|||.+++
T Consensus       195 ~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~  247 (284)
T 1nv8_A          195 MILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM  247 (284)
T ss_dssp             EEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred             EEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence            88887442111000   0  00000      0017899999 99999999875

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.53  E-value=4.4e-14  Score=117.76  Aligned_cols=98  Identities=21%  Similarity=0.390  Sum_probs=79.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCCEEEEEccccchHHhhccCCCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELA-----LSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~-----l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      ++.+|||||||+|..+..+++.. +. .+|+|+|+|+.+++.++++++..+     ..+++++.+|+.+..     ..++
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~  150 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-----AEEA  150 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-----GGGC
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc-----ccCC
Confidence            46899999999999999999885 44 689999999999999999998765     368999999997521     1246


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .||.|++..+.+              .+++++.++|||||.+++
T Consensus       151 ~fD~i~~~~~~~--------------~~~~~~~~~LkpgG~lv~  180 (226)
T 1i1n_A          151 PYDAIHVGAAAP--------------VVPQALIDQLKPGGRLIL  180 (226)
T ss_dssp             CEEEEEECSBBS--------------SCCHHHHHTEEEEEEEEE
T ss_pred             CcCEEEECCchH--------------HHHHHHHHhcCCCcEEEE
Confidence            799987765433              445678999999999875

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.52  E-value=2e-14  Score=119.91  Aligned_cols=102  Identities=20%  Similarity=0.253  Sum_probs=81.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCC-----CCcEEEEEeCCHHHHHHHHHHHHHhC-----CCCEEEEEccccchHHhhcc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNP-----DSGNYLGLEIRQKLVKRAEFWVQELA-----LSNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p-----~~~~v~giDis~~~v~~a~~~~~~~~-----l~ni~~~~~D~~~~~~~~~~  193 (241)
                      ++.+|||||||+|.++..+++...     . .+|+|+|+++.+++.|+++++..+     ..+++++.+|+.+..+... 
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-  157 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKN-SYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK-  157 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHTTTTTCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH-
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcccCCCC-CEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC-
Confidence            468999999999999999999863     4 689999999999999999998887     5789999999976321000 


Q ss_pred             CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..++.||.|++..+.+              .+++++.++|||||++++
T Consensus       158 ~~~~~fD~I~~~~~~~--------------~~~~~~~~~LkpgG~lv~  191 (227)
T 2pbf_A          158 KELGLFDAIHVGASAS--------------ELPEILVDLLAENGKLII  191 (227)
T ss_dssp             HHHCCEEEEEECSBBS--------------SCCHHHHHHEEEEEEEEE
T ss_pred             ccCCCcCEEEECCchH--------------HHHHHHHHhcCCCcEEEE
Confidence            1146799988765443              345778999999999875

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.52  E-value=6e-14  Score=125.14  Aligned_cols=102  Identities=17%  Similarity=0.210  Sum_probs=81.7

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||||||+|.++..+++.. . .+|+|+|+|+ |++.|+++++.+++ ++++++.+|+.+     .+.+++++|+
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g-~-~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~~~D~  134 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAG-A-KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEE-----VHLPVEKVDV  134 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTT-C-SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT-----SCCSCSCEEE
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcC-C-CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHH-----hcCCCCcEEE
Confidence            346899999999999999999873 3 5899999997 99999999999888 689999999986     2334578999


Q ss_pred             EEEeCC---CCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          202 VSILCP---DPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~~~~~---~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |+....   ..+..        ....+++++.++|||||.++
T Consensus       135 Ivs~~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          135 IISEWMGYFLLFES--------MLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEECCCBTTBTTTC--------HHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEcCchhhccCHH--------HHHHHHHHHHhhcCCCcEEE
Confidence            886541   11111        12479999999999999986

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.52  E-value=4.4e-14  Score=128.09  Aligned_cols=106  Identities=19%  Similarity=0.180  Sum_probs=84.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.++..+++.  + .+|+|+|+|+.+++.|+++++.+++ +++++.+|+.+.     ...+++||.|+
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g-~~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~-----~~~~~~fD~Ii  303 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--G-AEVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEA-----LTEEARFDIIV  303 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--T-CEEEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTT-----SCTTCCEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhc-----cccCCCeEEEE
Confidence            4679999999999999999997  4 5899999999999999999998886 489999999862     21247899999


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.+-.+...   ........+++++.++|||||.++|
T Consensus       304 ~npp~~~~~~---~~~~~~~~~l~~~~~~LkpGG~l~i  338 (381)
T 3dmg_A          304 TNPPFHVGGA---VILDVAQAFVNVAAARLRPGGVFFL  338 (381)
T ss_dssp             ECCCCCTTCS---SCCHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ECCchhhccc---ccHHHHHHHHHHHHHhcCcCcEEEE
Confidence            8765432100   0011235899999999999999985

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.52  E-value=1.2e-13  Score=127.08  Aligned_cols=112  Identities=16%  Similarity=0.116  Sum_probs=83.6

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHH-------HHHHHHhC--CCCEEEEEccccch-
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRA-------EFWVQELA--LSNIHFLFANASVS-  187 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a-------~~~~~~~~--l~ni~~~~~D~~~~-  187 (241)
                      +.....++.+|||||||+|.++..+++.++. .+|+|||+++.+++.|       +++++..|  ..|++++++|.... 
T Consensus       236 ~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~-~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~  314 (433)
T 1u2z_A          236 QQCQLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDN  314 (433)
T ss_dssp             HHTTCCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTC
T ss_pred             HhcCCCCCCEEEEeCCCcCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccc
Confidence            3344445789999999999999999998766 6899999999999999       88888888  56899999865421 


Q ss_pred             HHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          188 FKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       188 ~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+  +...++.||.|+++... +..+.        ...|+++.++|||||+|++
T Consensus       315 ~~--~~~~~~~FDvIvvn~~l-~~~d~--------~~~L~el~r~LKpGG~lVi  357 (433)
T 1u2z_A          315 NR--VAELIPQCDVILVNNFL-FDEDL--------NKKVEKILQTAKVGCKIIS  357 (433)
T ss_dssp             HH--HHHHGGGCSEEEECCTT-CCHHH--------HHHHHHHHTTCCTTCEEEE
T ss_pred             cc--cccccCCCCEEEEeCcc-ccccH--------HHHHHHHHHhCCCCeEEEE
Confidence            11  00013678988875322 11111        3778999999999999975

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.51  E-value=1.6e-13  Score=122.57  Aligned_cols=108  Identities=15%  Similarity=0.163  Sum_probs=84.4

Q ss_pred             HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCC
Q 026219          119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      .+...+..+|||||||+|.++..+++++|+ .+++|+|+ +.+++.|++++++.++. +++++.+|+.+.     + .+.
T Consensus       185 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~  256 (359)
T 1x19_A          185 EAKLDGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-----S-YPE  256 (359)
T ss_dssp             HCCCTTCCEEEEESCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-----C-CCC
T ss_pred             hcCCCCCCEEEEECCcccHHHHHHHHHCCC-CeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-----C-CCC
Confidence            333345689999999999999999999998 89999999 99999999999988875 499999999762     2 122


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       .|.|++.....+..+.      ....+++++.++|||||+++|
T Consensus       257 -~D~v~~~~vlh~~~d~------~~~~~l~~~~~~L~pgG~l~i  293 (359)
T 1x19_A          257 -ADAVLFCRILYSANEQ------LSTIMCKKAFDAMRSGGRLLI  293 (359)
T ss_dssp             -CSEEEEESCGGGSCHH------HHHHHHHHHHTTCCTTCEEEE
T ss_pred             -CCEEEEechhccCCHH------HHHHHHHHHHHhcCCCCEEEE
Confidence             2888776543222110      114899999999999999864

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.51  E-value=3.4e-14  Score=118.92  Aligned_cols=91  Identities=12%  Similarity=0.165  Sum_probs=75.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC-CCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY-PGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~-~~~~d~V  202 (241)
                      ++.+|||||||+|.++..+++.  + .+|+|+|+|+.+++.++++     ..+++++++|+.+.    .+.. +++||.|
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~----~~~~~~~~fD~v  115 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQ--A-ARWAAYDFSPELLKLARAN-----APHADVYEWNGKGE----LPAGLGAPFGLI  115 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGG--S-SEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSS----CCTTCCCCEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhc----cCCcCCCCEEEE
Confidence            4689999999999999999998  4 6899999999999999886     35899999999642    2333 6789999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +... ++             ..+++++.++|||||.++
T Consensus       116 ~~~~-~~-------------~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          116 VSRR-GP-------------TSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EEES-CC-------------SGGGGGHHHHEEEEEEEE
T ss_pred             EeCC-CH-------------HHHHHHHHHHcCCCcEEE
Confidence            8772 32             278889999999999985

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.51  E-value=5.2e-14  Score=122.34  Aligned_cols=107  Identities=12%  Similarity=0.128  Sum_probs=84.4

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-----------CCCCEEEEEccccchHHhh
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-----------ALSNIHFLFANASVSFKQL  191 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-----------~l~ni~~~~~D~~~~~~~~  191 (241)
                      +++.+|||||||+|.++..+++. +. .+|++||+++.+++.|++++ ..           ..++++++.+|+.+.++. 
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~-~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-  149 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DV-DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-  149 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CC-SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CC-CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-
Confidence            34689999999999999999998 66 79999999999999999987 32           235799999999764332 


Q ss_pred             ccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          192 VSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       192 ~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                          ++.||+|++..++|+...    .......+++++.++|+|||.+++
T Consensus       150 ----~~~fD~Ii~d~~~~~~~~----~~l~~~~~l~~~~~~L~pgG~lv~  191 (281)
T 1mjf_A          150 ----NRGFDVIIADSTDPVGPA----KVLFSEEFYRYVYDALNNPGIYVT  191 (281)
T ss_dssp             ----CCCEEEEEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEE
T ss_pred             ----cCCeeEEEECCCCCCCcc----hhhhHHHHHHHHHHhcCCCcEEEE
Confidence                478999998887654211    112346899999999999999874

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.51  E-value=5.7e-14  Score=117.59  Aligned_cols=101  Identities=24%  Similarity=0.396  Sum_probs=79.3

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||||||+|.++..+++.    .+++|+|+|+.+++.|+++....+ .+++++.+|+.+     .+ .++++|.|++
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~-----~~-~~~~fD~v~~  102 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRE-----LE-LPEPVDAITI  102 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGG-----CC-CSSCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhh-----cC-CCCCcCEEEE
Confidence            589999999999999999886    379999999999999999988766 579999999976     22 2478999887


Q ss_pred             eC-CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LC-PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~-~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .. ...+....     .....+++++.++|||||.+++
T Consensus       103 ~~~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~l~~  135 (243)
T 3d2l_A          103 LCDSLNYLQTE-----ADVKQTFDSAARLLTDGGKLLF  135 (243)
T ss_dssp             CTTGGGGCCSH-----HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eCCchhhcCCH-----HHHHHHHHHHHHhcCCCeEEEE
Confidence            54 22222000     0124899999999999999875

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.51  E-value=8.8e-14  Score=121.88  Aligned_cols=111  Identities=14%  Similarity=0.110  Sum_probs=83.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-------CCCCEEEEEccccchH-HhhccCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-------ALSNIHFLFANASVSF-KQLVSSY  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-------~l~ni~~~~~D~~~~~-~~~~~~~  195 (241)
                      ++.+|||||||+|.++..+++. +. .+++|+|+|+.|++.|+++....       +..+++++++|+.+.. ...+...
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-RI-NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-CC-CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            4679999999999999999884 44 68999999999999999988764       3357999999997621 0001112


Q ss_pred             CCcEeEEEEeCCCCch-hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 PGPLMLVSILCPDPHF-KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~-~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++||+|+..+...|. ...     .....+++++.++|||||.+++
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~-----~~~~~~l~~~~~~LkpgG~li~  153 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYSFESY-----EQADMMLRNACERLSPGGYFIG  153 (313)
T ss_dssp             TCCEEEEEEETCGGGGGGSH-----HHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCCEEEEEEecchhhccCCH-----HHHHHHHHHHHHHhCCCcEEEE
Confidence            4589999988765543 110     0114899999999999999875

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.51  E-value=8.9e-14  Score=121.03  Aligned_cols=110  Identities=14%  Similarity=0.220  Sum_probs=87.8

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA----LSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~----l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++..+|||||||+|..+..+++..+. .+++++|+++.+++.|++++...+    .++++++.+|+.+.++.    .++.
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~  151 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSV-ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----VTNT  151 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH----CCSC
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh----CCCC
Confidence            45689999999999999999987666 799999999999999999875432    35899999999864332    2578


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||+|++..++++...    .......+++.+.++|+|||.+++
T Consensus       152 fD~Ii~d~~~~~~~~----~~l~~~~~l~~~~~~L~pgG~lv~  190 (283)
T 2i7c_A          152 YDVIIVDSSDPIGPA----ETLFNQNFYEKIYNALKPNGYCVA  190 (283)
T ss_dssp             EEEEEEECCCTTTGG----GGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEEEcCCCCCCcc----hhhhHHHHHHHHHHhcCCCcEEEE
Confidence            999998877664321    123446999999999999999874

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.50  E-value=7.6e-14  Score=122.66  Aligned_cols=111  Identities=15%  Similarity=0.190  Sum_probs=83.5

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh----CCCCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL----ALSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~----~l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      +++.+|||||||+|.++..+++..+. .+|+++|+|+.+++.|++++...    ..++++++.+|+.+....   ..+++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~---~~~~~  169 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTV-EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ---TPDNT  169 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS---SCTTC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh---ccCCc
Confidence            44689999999999999999987666 79999999999999999987431    235799999999763211   13678


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||+|++..++++...    ..+....+++++.++|||||.+++
T Consensus       170 fDvIi~d~~~~~~~~----~~l~~~~~l~~~~~~LkpgG~lv~  208 (304)
T 3bwc_A          170 YDVVIIDTTDPAGPA----SKLFGEAFYKDVLRILKPDGICCN  208 (304)
T ss_dssp             EEEEEEECC-------------CCHHHHHHHHHHEEEEEEEEE
T ss_pred             eeEEEECCCCccccc----hhhhHHHHHHHHHHhcCCCcEEEE
Confidence            999998877654211    122346899999999999999875

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.50  E-value=6.3e-14  Score=124.25  Aligned_cols=110  Identities=14%  Similarity=0.205  Sum_probs=87.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH--hC--CCCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE--LA--LSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~--~~--l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++..+|||||||+|.++..+++..+. .+|+++|+|+.+++.|++++..  .+  .++++++.+|+.+.++.    .++.
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~  189 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSV-ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----VTNT  189 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH----CCSC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh----cCCC
Confidence            34689999999999999999987666 7999999999999999998764  22  25799999999764332    2578


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||+|++..++|+...    .......+++++.++|+|||.+++
T Consensus       190 fDvIi~d~~~p~~~~----~~l~~~~~l~~~~~~LkpgG~lv~  228 (321)
T 2pt6_A          190 YDVIIVDSSDPIGPA----ETLFNQNFYEKIYNALKPNGYCVA  228 (321)
T ss_dssp             EEEEEEECCCSSSGG----GGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEEECCcCCCCcc----hhhhHHHHHHHHHHhcCCCcEEEE
Confidence            999998877664211    122336999999999999999875

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.50  E-value=7.3e-14  Score=124.51  Aligned_cols=106  Identities=15%  Similarity=0.160  Sum_probs=84.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .+.+|||||||+|.++..+++.++. .+|+|+|+|+.+++.++++++.+++. ++++.+|+.+     .  .+++||.|+
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~-----~--~~~~fD~Iv  266 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPK-IRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFS-----E--VKGRFDMII  266 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTT-CBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTT-----T--CCSCEEEEE
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccc-----c--ccCCeeEEE
Confidence            4578999999999999999999887 79999999999999999999888764 6788899865     1  257899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.+..+...   ........+++++.++|||||.++|
T Consensus       267 ~~~~~~~g~~---~~~~~~~~~l~~~~~~LkpgG~l~i  301 (343)
T 2pjd_A          267 SNPPFHDGMQ---TSLDAAQTLIRGAVRHLNSGGELRI  301 (343)
T ss_dssp             ECCCCCSSSH---HHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ECCCcccCcc---CCHHHHHHHHHHHHHhCCCCcEEEE
Confidence            8765432100   0011225899999999999999875

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.50  E-value=1.4e-13  Score=123.55  Aligned_cols=104  Identities=14%  Similarity=0.111  Sum_probs=84.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhcc-CCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVS-SYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~-~~~~~~d~  201 (241)
                      ...+|||||||+|.++..+++++|+ .+++++|+ +.+++.|++++++.++ .+++++.+|+.+     .. ..++.+|.
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~p~~~D~  251 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKE-VEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLD-----RDVPFPTGFDA  251 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTT-CEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCS-----SSCCCCCCCSE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccc-----cCCCCCCCcCE
Confidence            4589999999999999999999998 89999999 9999999999887776 479999999975     11 12467999


Q ss_pred             EEEeCCCC-chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDP-HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~-~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++..... |.+..       ...+++++++.|||||+|+|
T Consensus       252 v~~~~vlh~~~~~~-------~~~~l~~~~~~L~pgG~l~i  285 (363)
T 3dp7_A          252 VWMSQFLDCFSEEE-------VISILTRVAQSIGKDSKVYI  285 (363)
T ss_dssp             EEEESCSTTSCHHH-------HHHHHHHHHHHCCTTCEEEE
T ss_pred             EEEechhhhCCHHH-------HHHHHHHHHHhcCCCcEEEE
Confidence            88765432 22211       14889999999999999875

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.50  E-value=5.9e-14  Score=115.86  Aligned_cols=99  Identities=19%  Similarity=0.191  Sum_probs=76.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .+.+|||||||+|.++..+++.  + .+++|+|+|+.+++.++++      .++.++.+|+.+.... ....+.+||.|+
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~-~~~~~~~fD~v~  121 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADR--G-IEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEA-KVPVGKDYDLIC  121 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTT--T-CEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTT-CSCCCCCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC--C-CEEEEEcCCHHHHHHHHHh------cccccchhhHHhhccc-ccccCCCccEEE
Confidence            4589999999999999999987  4 6899999999999999875      4677888888753111 111345599998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ...... ..+.        ..+++++.++|||||.++|
T Consensus       122 ~~~~l~-~~~~--------~~~l~~~~~~L~pgG~l~~  150 (227)
T 3e8s_A          122 ANFALL-HQDI--------IELLSAMRTLLVPGGALVI  150 (227)
T ss_dssp             EESCCC-SSCC--------HHHHHHHHHTEEEEEEEEE
T ss_pred             ECchhh-hhhH--------HHHHHHHHHHhCCCeEEEE
Confidence            765433 2222        4999999999999999985

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.50  E-value=6.2e-14  Score=121.59  Aligned_cols=110  Identities=11%  Similarity=0.169  Sum_probs=86.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh--CC--CCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL--AL--SNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~--~l--~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++..+|||||||+|.++..+++..+. .+|++||+++.+++.|++++...  ++  ++++++.+|+.+.++.    .++.
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~----~~~~  148 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSV-KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK----SENQ  148 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTC-SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT----CCSC
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCC-ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh----CCCC
Confidence            45689999999999999999987665 79999999999999999987542  23  5799999999864332    3578


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||+|++..++++...    ..+....+++.+.++|+|||.+++
T Consensus       149 fD~Ii~d~~~~~~~~----~~l~~~~~~~~~~~~L~pgG~lv~  187 (275)
T 1iy9_A          149 YDVIMVDSTEPVGPA----VNLFTKGFYAGIAKALKEDGIFVA  187 (275)
T ss_dssp             EEEEEESCSSCCSCC----CCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred             eeEEEECCCCCCCcc----hhhhHHHHHHHHHHhcCCCcEEEE
Confidence            999998776653211    112345899999999999999874

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.50  E-value=4.5e-14  Score=124.28  Aligned_cols=110  Identities=14%  Similarity=0.190  Sum_probs=83.8

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH--hC--CCCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE--LA--LSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~--~~--l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++..+|||||||+|..+..+++..+. .+|++||+++.+++.|++++..  .+  .++++++.+|+.+.++.    .+++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~----~~~~  168 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSV-ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ----NQDA  168 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT----CSSC
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh----CCCC
Confidence            34689999999999999999988766 7999999999999999998765  23  25799999999764332    3578


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||+|++..++++....    ......+++++.++|+|||.+++
T Consensus       169 fD~Ii~d~~~~~~~~~----~l~~~~~l~~~~~~LkpgG~lv~  207 (304)
T 2o07_A          169 FDVIITDSSDPMGPAE----SLFKESYYQLMKTALKEDGVLCC  207 (304)
T ss_dssp             EEEEEEECC---------------CHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEEECCCCCCCcch----hhhHHHHHHHHHhccCCCeEEEE
Confidence            9999988776532110    12234899999999999999874

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.50  E-value=6.5e-14  Score=117.84  Aligned_cols=103  Identities=18%  Similarity=0.299  Sum_probs=81.0

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      +.+...++.+|||||||+|.++..+++..+  .+|+|+|+++.+++.|+++++..++.+++++.+|+...    ++ ...
T Consensus        85 ~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~-~~~  157 (235)
T 1jg1_A           85 EIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG----FP-PKA  157 (235)
T ss_dssp             HHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----CG-GGC
T ss_pred             HhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccC----CC-CCC
Confidence            334434567999999999999999999875  47999999999999999999988888899999998431    11 124


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .||.|++....++              +.+++.+.|||||++++
T Consensus       158 ~fD~Ii~~~~~~~--------------~~~~~~~~L~pgG~lvi  187 (235)
T 1jg1_A          158 PYDVIIVTAGAPK--------------IPEPLIEQLKIGGKLII  187 (235)
T ss_dssp             CEEEEEECSBBSS--------------CCHHHHHTEEEEEEEEE
T ss_pred             CccEEEECCcHHH--------------HHHHHHHhcCCCcEEEE
Confidence            5999887765432              23468899999999875

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.49  E-value=1.6e-13  Score=121.24  Aligned_cols=103  Identities=17%  Similarity=0.144  Sum_probs=83.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +..+|||||||+|.++..+++.+|+ .+++++|+ +.+++.|++++.+.++ ++++++.+|+.+.    .   +..+|.|
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---p~~~D~v  239 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHED-LSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP----L---PAGAGGY  239 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----C---CCSCSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCC-CeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC----C---CCCCcEE
Confidence            3579999999999999999999998 89999999 9999999999988887 5799999999641    1   2378988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.....+..+.      ....+++++++.|||||+++|
T Consensus       240 ~~~~vlh~~~~~------~~~~~l~~~~~~L~pgG~l~i  272 (332)
T 3i53_A          240 VLSAVLHDWDDL------SAVAILRRCAEAAGSGGVVLV  272 (332)
T ss_dssp             EEESCGGGSCHH------HHHHHHHHHHHHHTTTCEEEE
T ss_pred             EEehhhccCCHH------HHHHHHHHHHHhcCCCCEEEE
Confidence            876543222221      014899999999999999875

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.49  E-value=7.3e-14  Score=122.37  Aligned_cols=111  Identities=14%  Similarity=0.209  Sum_probs=83.8

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH--hC--CCCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE--LA--LSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~--~~--l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++..+|||||||+|..+..+++..+. .+|+++|+|+.+++.|++++..  .+  .++++++.+|+.+.++.    .++.
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~  163 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSV-EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK----FKNE  163 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTC-SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG----CSSC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh----CCCC
Confidence            34589999999999999999987666 7999999999999999998764  22  35899999999764322    3578


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||+|++..++||...   ........+++++.++|||||.+++
T Consensus       164 fD~Ii~d~~~~~~~~---~~~l~~~~~l~~~~~~LkpgG~lv~  203 (296)
T 1inl_A          164 FDVIIIDSTDPTAGQ---GGHLFTEEFYQACYDALKEDGVFSA  203 (296)
T ss_dssp             EEEEEEEC-------------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEEEcCCCcccCc---hhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            999998876653211   1122446999999999999999875

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.49  E-value=1.8e-13  Score=120.54  Aligned_cols=105  Identities=23%  Similarity=0.244  Sum_probs=84.5

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .+..+|||||||+|.++..+++.+|+ .+++|+|++ .+++.|++++.+.++. +++++.+|+.+     .+ .+..+|.
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~-~~~~~D~  235 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPN-AEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFE-----VD-YGNDYDL  235 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTT-CEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTT-----SC-CCSCEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCC-CeEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccccc-----CC-CCCCCcE
Confidence            34689999999999999999999988 899999999 9999999999888875 69999999975     12 2345999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++.....+..+.      ....+++++.++|+|||+++|
T Consensus       236 v~~~~~l~~~~~~------~~~~~l~~~~~~L~pgG~l~i  269 (335)
T 2r3s_A          236 VLLPNFLHHFDVA------TCEQLLRKIKTALAVEGKVIV  269 (335)
T ss_dssp             EEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEcchhccCCHH------HHHHHHHHHHHhCCCCcEEEE
Confidence            9876543322111      114899999999999998875

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.49  E-value=4.7e-14  Score=120.73  Aligned_cols=97  Identities=23%  Similarity=0.330  Sum_probs=81.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.++..+++..   .+|+|+|+|+.+++.|+++++.+++. ++++.+|+.+.    +  +++.+|+|+
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~~g---~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~--~~~~fD~Vv  189 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L--PFGPFDLLV  189 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G--GGCCEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C--cCCCCCEEE
Confidence            46899999999999999998864   37999999999999999999988876 89999998752    2  246899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+....+           ...+++++.++|||||.+++
T Consensus       190 ~n~~~~~-----------~~~~l~~~~~~LkpgG~lil  216 (254)
T 2nxc_A          190 ANLYAEL-----------HAALAPRYREALVPGGRALL  216 (254)
T ss_dssp             EECCHHH-----------HHHHHHHHHHHEEEEEEEEE
T ss_pred             ECCcHHH-----------HHHHHHHHHHHcCCCCEEEE
Confidence            8754321           14899999999999999875

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.49  E-value=9.7e-15  Score=125.25  Aligned_cols=108  Identities=14%  Similarity=0.143  Sum_probs=76.4

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC----------------------------
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL----------------------------  174 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l----------------------------  174 (241)
                      .++.+|||||||+|.++..++....  .+|+|+|+|+.|++.|+++++....                            
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            3567899999999988877666532  2699999999999999988754310                            


Q ss_pred             -CCEE-EEEccccchHHhhccCCCCcEeEEEEeCCCCc----hhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          175 -SNIH-FLFANASVSFKQLVSSYPGPLMLVSILCPDPH----FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       175 -~ni~-~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~----~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       .++. ++++|+.+..+. .+..+++||+|+..+...+    ..+.        ..++++++++|||||.|+|
T Consensus       132 ~~~i~~~~~~D~~~~~~~-~~~~~~~fD~V~~~~~l~~i~~~~~~~--------~~~l~~i~r~LKPGG~li~  195 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPL-APAVLPLADCVLTLLAMECACCSLDAY--------RAALCNLASLLKPGGHLVT  195 (263)
T ss_dssp             HHHEEEEEECCTTSSSTT-TTCCCCCEEEEEEESCHHHHCSSHHHH--------HHHHHHHHTTEEEEEEEEE
T ss_pred             HhhhheEEeccccCCCCC-CccccCCCCEeeehHHHHHhcCCHHHH--------HHHHHHHHHHcCCCcEEEE
Confidence             1244 889999762110 0112468999988754322    1111        4899999999999999985

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.49  E-value=7.5e-14  Score=119.29  Aligned_cols=92  Identities=18%  Similarity=0.269  Sum_probs=77.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++..++ .+++|+|+|+.+++.|+++.     .++.++.+|+.+     .+..+++||.|+
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~-----~~~~~~~fD~v~  153 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPE-ITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHR-----LPFSDTSMDAII  153 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTT-SEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTS-----CSBCTTCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhh-----CCCCCCceeEEE
Confidence            4689999999999999999998877 79999999999999997753     578999999875     233468899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+..               .+++++.++|||||.+++
T Consensus       154 ~~~~~---------------~~l~~~~~~L~pgG~l~~  176 (269)
T 1p91_A          154 RIYAP---------------CKAEELARVVKPGGWVIT  176 (269)
T ss_dssp             EESCC---------------CCHHHHHHHEEEEEEEEE
T ss_pred             EeCCh---------------hhHHHHHHhcCCCcEEEE
Confidence            76542               457889999999999875

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.49  E-value=2.7e-13  Score=121.35  Aligned_cols=111  Identities=17%  Similarity=0.235  Sum_probs=86.6

Q ss_pred             hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC
Q 026219          116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~  194 (241)
                      +.+.+...++.+|||||||+|.++..+++.+|+ .+++++|+ +.+++.|++++...++. +++++.+|+.+.    +  
T Consensus       174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--  245 (374)
T 1qzz_A          174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPH-LRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP----L--  245 (374)
T ss_dssp             HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----C--
T ss_pred             HHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCC-CEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc----C--
Confidence            333333334689999999999999999999988 89999999 99999999999888875 799999999651    2  


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       +..+|.|++.....+..+.      ....+++++.++|||||+++|
T Consensus       246 -~~~~D~v~~~~vl~~~~~~------~~~~~l~~~~~~L~pgG~l~i  285 (374)
T 1qzz_A          246 -PVTADVVLLSFVLLNWSDE------DALTILRGCVRALEPGGRLLV  285 (374)
T ss_dssp             -SCCEEEEEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             -CCCCCEEEEeccccCCCHH------HHHHHHHHHHHhcCCCcEEEE
Confidence             2349998876543222111      013899999999999998875

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.49  E-value=2.7e-14  Score=121.26  Aligned_cols=117  Identities=13%  Similarity=-0.028  Sum_probs=82.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHH--CCCCcEEEEEeCCHHHHHHHHHHHHHh---CCCC----------------------
Q 026219          124 TLPLMVDIGSGSGRFLIWLARR--NPDSGNYLGLEIRQKLVKRAEFWVQEL---ALSN----------------------  176 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~--~p~~~~v~giDis~~~v~~a~~~~~~~---~l~n----------------------  176 (241)
                      .+.+|||+|||+|.++..+++.  .+. .+|+|+|+|+.+++.|++++...   ++.+                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~-~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSL-RQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGE-EEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCC-CeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence            4578999999999999999998  666 78999999999999999887655   3322                      


Q ss_pred             ----EE-------------EEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhh-hhcccchHHHHHHHHhccccCCE
Q 026219          177 ----IH-------------FLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKH-HKRRVVQKPLVDSIIDYLMPGGK  238 (241)
Q Consensus       177 ----i~-------------~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~-~~~r~~~~~ll~~l~r~LkpGG~  238 (241)
                          ++             ++++|+.+.........+..||+|+.+.|-....... .........+++++.++|+|||.
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  209 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV  209 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence                56             9999987632110000134799998875421110000 00012345899999999999999


Q ss_pred             EEc
Q 026219          239 VYF  241 (241)
Q Consensus       239 l~~  241 (241)
                      ++|
T Consensus       210 l~~  212 (250)
T 1o9g_A          210 IAV  212 (250)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.48  E-value=5.3e-13  Score=119.96  Aligned_cols=104  Identities=15%  Similarity=0.137  Sum_probs=84.1

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .+..+|||||||+|.++..+++++|+ .+++++|+ +.+++.|++++...++ ++++++.+|+.+.    .   +..+|.
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~---p~~~D~  271 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPG-LRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET----I---PDGADV  271 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC----C---CSSCSE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCC-CeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC----C---CCCceE
Confidence            45689999999999999999999998 89999999 9999999999988886 5799999999641    1   237898


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++.....+..+.      ....+++++++.|||||+++|
T Consensus       272 v~~~~vlh~~~d~------~~~~~L~~~~~~L~pgG~l~i  305 (369)
T 3gwz_A          272 YLIKHVLHDWDDD------DVVRILRRIATAMKPDSRLLV  305 (369)
T ss_dssp             EEEESCGGGSCHH------HHHHHHHHHHTTCCTTCEEEE
T ss_pred             EEhhhhhccCCHH------HHHHHHHHHHHHcCCCCEEEE
Confidence            8776543222211      013799999999999999975

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.48  E-value=1.9e-13  Score=121.55  Aligned_cols=105  Identities=16%  Similarity=0.208  Sum_probs=84.9

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ..+|||||||+|.++..+++++|+ .+++++|+ +.+++.+++++.+.++. +++++.+|+.+..    ..++..+|+|+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~~D~v~  253 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQ-LTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDAR----NFEGGAADVVM  253 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGG----GGTTCCEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCC-CeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCc----ccCCCCccEEE
Confidence            689999999999999999999998 89999999 88999999999888774 6999999997621    01356799998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.....+..+.      ....+++++.+.|||||+++|
T Consensus       254 ~~~vlh~~~~~------~~~~~l~~~~~~L~pgG~l~i  285 (352)
T 3mcz_A          254 LNDCLHYFDAR------EAREVIGHAAGLVKPGGALLI  285 (352)
T ss_dssp             EESCGGGSCHH------HHHHHHHHHHHTEEEEEEEEE
T ss_pred             EecccccCCHH------HHHHHHHHHHHHcCCCCEEEE
Confidence            76544322211      014899999999999999875

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.48  E-value=1.4e-13  Score=124.86  Aligned_cols=115  Identities=12%  Similarity=0.014  Sum_probs=85.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+|||+|||+|.+++.+++...  .+|+|+|+|+.+++.|++|++.+++.  |++++++|+.+.++.... ....||+
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~-~~~~fD~  288 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR-HHLTYDI  288 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH-TTCCEEE
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH-hCCCccE
Confidence            468999999999999999998643  37999999999999999999999986  899999999876544321 1357999


Q ss_pred             EEEeCCCCch-hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHF-KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~-~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++..|--.. +.........+..+++.+.++|+|||.+++
T Consensus       289 Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~  329 (385)
T 2b78_A          289 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIA  329 (385)
T ss_dssp             EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            8886543100 000000011234678889999999999875

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.47  E-value=2.1e-13  Score=123.25  Aligned_cols=105  Identities=19%  Similarity=0.281  Sum_probs=81.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||||||+|.++..+++...  .+|+|+|+| .|++.|+++++.+++. +++++++|+.+     .. .++.+|+
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~-~~~~~D~  132 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVED-----IS-LPEKVDV  132 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGG-----CC-CSSCEEE
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhh-----cC-cCCcceE
Confidence            3568999999999999999999743  389999999 9999999999998885 49999999976     22 2478999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+.........     .......+++++.++|||||.+++
T Consensus       133 Iv~~~~~~~l~-----~e~~~~~~l~~~~~~LkpgG~li~  167 (376)
T 3r0q_C          133 IISEWMGYFLL-----RESMFDSVISARDRWLKPTGVMYP  167 (376)
T ss_dssp             EEECCCBTTBT-----TTCTHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEcChhhccc-----chHHHHHHHHHHHhhCCCCeEEEE
Confidence            88743111100     001225899999999999999874

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.47  E-value=6.9e-14  Score=123.71  Aligned_cols=110  Identities=14%  Similarity=0.165  Sum_probs=82.1

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh--C--CCCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL--A--LSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~--~--l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++..+|||||||+|..+..+++..+. .+|+++|+++.+++.|++++...  +  .++++++.+|+.+.++.    .++.
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~----~~~~  181 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESV-EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN----HKNE  181 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTC-CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH----CTTC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh----cCCC
Confidence            34579999999999999999987666 79999999999999999987543  2  25799999999875433    3578


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||+|++..++|+...    .......+++++.++|+|||.+++
T Consensus       182 fD~Ii~d~~~~~~~~----~~l~t~~~l~~~~~~LkpgG~lv~  220 (314)
T 2b2c_A          182 FDVIITDSSDPVGPA----ESLFGQSYYELLRDALKEDGILSS  220 (314)
T ss_dssp             EEEEEECCC-----------------HHHHHHHHEEEEEEEEE
T ss_pred             ceEEEEcCCCCCCcc----hhhhHHHHHHHHHhhcCCCeEEEE
Confidence            999998776653211    112336899999999999999875

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.47  E-value=2e-14  Score=124.50  Aligned_cols=108  Identities=18%  Similarity=0.127  Sum_probs=75.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-----------------CC------------
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-----------------AL------------  174 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-----------------~l------------  174 (241)
                      ++.+|||||||+|.+...+++ .+. .+|+|+|+|+.|++.|++++++.                 +.            
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~-~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSAC-SHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGG-GGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhc-cCC-CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            468999999999995544443 334 58999999999999998865421                 10            


Q ss_pred             -CCEEEEEccccchHHhh-ccCCCCcEeEEEEeCCCCc----hhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          175 -SNIHFLFANASVSFKQL-VSSYPGPLMLVSILCPDPH----FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       175 -~ni~~~~~D~~~~~~~~-~~~~~~~~d~V~~~~~~~~----~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       ..++++.+|+.+.++.. ...++++||+|+..+...+    ..+.        ..+++++.++|||||.|+|
T Consensus       149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~--------~~~l~~~~r~LkpGG~l~~  213 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASF--------QRALDHITTLLRPGGHLLL  213 (289)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHH--------HHHHHHHHTTEEEEEEEEE
T ss_pred             hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHH--------HHHHHHHHHhcCCCCEEEE
Confidence             01567788887522110 0123567999988875443    2222        4899999999999999985

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.47  E-value=8.3e-14  Score=116.30  Aligned_cols=99  Identities=17%  Similarity=0.295  Sum_probs=78.3

Q ss_pred             HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCc
Q 026219          119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      .....++.+|||||||+|.++..+++..   .+|+|+|+|+.+++.++++....+  +++++.+|+.+.++     .+++
T Consensus        65 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~-----~~~~  134 (231)
T 1vbf_A           65 ELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE-----EEKP  134 (231)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG-----GGCC
T ss_pred             hcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc-----cCCC
Confidence            3333456899999999999999999985   479999999999999999886555  89999999975211     2478


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||.|++....++.              .+++.++|||||.+++
T Consensus       135 fD~v~~~~~~~~~--------------~~~~~~~L~pgG~l~~  163 (231)
T 1vbf_A          135 YDRVVVWATAPTL--------------LCKPYEQLKEGGIMIL  163 (231)
T ss_dssp             EEEEEESSBBSSC--------------CHHHHHTEEEEEEEEE
T ss_pred             ccEEEECCcHHHH--------------HHHHHHHcCCCcEEEE
Confidence            9998876544322              2468899999999875

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.47  E-value=5.1e-13  Score=115.71  Aligned_cols=106  Identities=15%  Similarity=0.189  Sum_probs=80.9

Q ss_pred             CCcEEEEcCCc---cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHH--------hhcc
Q 026219          125 LPLMVDIGSGS---GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFK--------QLVS  193 (241)
Q Consensus       125 ~~~VLDIGCGt---G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~--------~~~~  193 (241)
                      ..+|||||||+   |.++..+.+..|+ .+|+|+|+|+.|++.|++++..  ..+++++.+|+.+...        ..++
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~-~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPD-ARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCC-CEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccCC
Confidence            47899999999   9998888888888 8999999999999999998742  3579999999976310        1121


Q ss_pred             CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                        ..++|.|++.....|..+.      -...++++++++|||||.|+|
T Consensus       155 --~~~~d~v~~~~vlh~~~d~------~~~~~l~~~~~~L~pGG~l~i  194 (274)
T 2qe6_A          155 --FSRPAAIMLVGMLHYLSPD------VVDRVVGAYRDALAPGSYLFM  194 (274)
T ss_dssp             --TTSCCEEEETTTGGGSCTT------THHHHHHHHHHHSCTTCEEEE
T ss_pred             --CCCCEEEEEechhhhCCcH------HHHHHHHHHHHhCCCCcEEEE
Confidence              2478888766543332220      014899999999999999975

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.47  E-value=1.1e-13  Score=115.47  Aligned_cols=100  Identities=18%  Similarity=0.250  Sum_probs=76.7

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +++.+|||||||+|.++..+++.++   +++|+|+|+.+++.|+++.     ++++++.+|+.+     .+ .++.+|+|
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~-----~~-~~~~~D~v  104 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL-----PDATLHQGDMRD-----FR-LGRKFSAV  104 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTT-----CC-CSSCEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHH-----cc-cCCCCcEE
Confidence            3468999999999999999999854   6999999999999998753     578999999976     22 25789998


Q ss_pred             EEeC-CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILC-PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~-~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..+ ...+....     .....+++++.++|||||.++|
T Consensus       105 ~~~~~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~l~~  139 (239)
T 3bxo_A          105 VSMFSSVGYLKTT-----EELGAAVASFAEHLEPGGVVVV  139 (239)
T ss_dssp             EECTTGGGGCCSH-----HHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEcCchHhhcCCH-----HHHHHHHHHHHHhcCCCeEEEE
Confidence            8543 21221100     0114899999999999999875

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.47  E-value=6.6e-14  Score=117.10  Aligned_cols=98  Identities=19%  Similarity=0.325  Sum_probs=79.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCC------CCcEEEEEeCCHHHHHHHHHHHHHhC-----CCCEEEEEccccchHHhhc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNP------DSGNYLGLEIRQKLVKRAEFWVQELA-----LSNIHFLFANASVSFKQLV  192 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p------~~~~v~giDis~~~v~~a~~~~~~~~-----l~ni~~~~~D~~~~~~~~~  192 (241)
                      ++.+|||||||+|.++..+++..+      . .+|+|+|+++++++.|+++++..+     ..+++++.+|+.+.+    
T Consensus        84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----  158 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFYRYIKAKGVDAD-TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY----  158 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTT-CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC----
T ss_pred             CCCEEEEECCCccHHHHHHHHhcccccCCcc-CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC----
Confidence            467999999999999999998653      2 489999999999999999988766     578999999997521    


Q ss_pred             cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      . ..+.||.|++....+              .+.+++.+.|||||++++
T Consensus       159 ~-~~~~fD~I~~~~~~~--------------~~~~~~~~~LkpgG~lvi  192 (227)
T 1r18_A          159 P-PNAPYNAIHVGAAAP--------------DTPTELINQLASGGRLIV  192 (227)
T ss_dssp             G-GGCSEEEEEECSCBS--------------SCCHHHHHTEEEEEEEEE
T ss_pred             C-cCCCccEEEECCchH--------------HHHHHHHHHhcCCCEEEE
Confidence            1 136799998776544              234678999999999875

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.47  E-value=9.5e-14  Score=117.69  Aligned_cols=97  Identities=18%  Similarity=0.175  Sum_probs=76.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHH----CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhccCCCCc
Q 026219          125 LPLMVDIGSGSGRFLIWLARR----NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVSSYPGP  198 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~----~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~~~~~~  198 (241)
                      +.+|||||||+|..+..+++.    .++ ++|+|||+|++|++.|+.    .. .+++++++|+.+.  ++..   .+.+
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~-~~V~gvD~s~~~l~~a~~----~~-~~v~~~~gD~~~~~~l~~~---~~~~  152 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGID-CQVIGIDRDLSRCQIPAS----DM-ENITLHQGDCSDLTTFEHL---REMA  152 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCC-CEEEEEESCCTTCCCCGG----GC-TTEEEEECCSSCSGGGGGG---SSSC
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCC-CEEEEEeCChHHHHHHhc----cC-CceEEEECcchhHHHHHhh---ccCC
Confidence            479999999999999999997    566 899999999999998861    12 5899999999863  2221   1246


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHh-ccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIID-YLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r-~LkpGG~l~~  241 (241)
                      ||.|++.....           ....+++++.+ +|||||.+++
T Consensus       153 fD~I~~d~~~~-----------~~~~~l~~~~r~~LkpGG~lv~  185 (236)
T 2bm8_A          153 HPLIFIDNAHA-----------NTFNIMKWAVDHLLEEGDYFII  185 (236)
T ss_dssp             SSEEEEESSCS-----------SHHHHHHHHHHHTCCTTCEEEE
T ss_pred             CCEEEECCchH-----------hHHHHHHHHHHhhCCCCCEEEE
Confidence            99988765421           12489999997 9999999975

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.47  E-value=2.1e-13  Score=115.16  Aligned_cols=101  Identities=16%  Similarity=0.157  Sum_probs=82.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCC-cEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPG-PLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~-~~d~  201 (241)
                      ++.+|||||||+|.+++.+++.+|. .+|+|+|+++.+++.|++|++.+++. +++++.+|+.+.+      +++ .+|.
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l------~~~~~~D~   87 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAF------EETDQVSV   87 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC------CGGGCCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhc------ccCcCCCE
Confidence            3679999999999999999999887 78999999999999999999999986 5999999997632      122 5887


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++.-..-          .+...+++...+.|+|+|++++
T Consensus        88 IviaG~Gg----------~~i~~Il~~~~~~L~~~~~lVl  117 (225)
T 3kr9_A           88 ITIAGMGG----------RLIARILEEGLGKLANVERLIL  117 (225)
T ss_dssp             EEEEEECH----------HHHHHHHHHTGGGCTTCCEEEE
T ss_pred             EEEcCCCh----------HHHHHHHHHHHHHhCCCCEEEE
Confidence            76542110          0124889999999999999875

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.46  E-value=2.5e-13  Score=109.31  Aligned_cols=107  Identities=16%  Similarity=0.204  Sum_probs=80.4

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      .+...+.. ++.+|||||||+|.++..+++.  + .+++|+|+|+.+++.++++.     ++++++.+|+.+     .+.
T Consensus        38 ~~l~~~~~-~~~~vLdiG~G~G~~~~~l~~~--~-~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~-----~~~  103 (195)
T 3cgg_A           38 RLIDAMAP-RGAKILDAGCGQGRIGGYLSKQ--G-HDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSV-----DQI  103 (195)
T ss_dssp             HHHHHHSC-TTCEEEEETCTTTHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTT-----SCC
T ss_pred             HHHHHhcc-CCCeEEEECCCCCHHHHHHHHC--C-CcEEEEcCCHHHHHHHHHhC-----CCCcEEEccccc-----CCC
Confidence            34444433 4689999999999999999987  4 58999999999999998754     468999999976     233


Q ss_pred             CCCcEeEEEEeCCC-CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPD-PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~-~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++.+|.|+...+. .+....      ....+++++.++|+|||.+++
T Consensus       104 ~~~~~D~i~~~~~~~~~~~~~------~~~~~l~~~~~~l~~~G~l~~  145 (195)
T 3cgg_A          104 SETDFDLIVSAGNVMGFLAED------GREPALANIHRALGADGRAVI  145 (195)
T ss_dssp             CCCCEEEEEECCCCGGGSCHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCceeEEEECCcHHhhcChH------HHHHHHHHHHHHhCCCCEEEE
Confidence            46789998876321 111000      114899999999999999875

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.46  E-value=5e-13  Score=119.15  Aligned_cols=110  Identities=19%  Similarity=0.308  Sum_probs=86.2

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCC
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~  195 (241)
                      .+.+...++.+|||||||+|.++..+++.+++ .+++++|+ +.+++.|+++++..++. +++++.+|+.+.    +   
T Consensus       176 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---  246 (360)
T 1tw3_A          176 AAAYDWTNVRHVLDVGGGKGGFAAAIARRAPH-VSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP----L---  246 (360)
T ss_dssp             HHHSCCTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC----C---
T ss_pred             HHhCCCccCcEEEEeCCcCcHHHHHHHHhCCC-CEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC----C---
Confidence            34443345689999999999999999999988 89999999 99999999999888875 799999999651    1   


Q ss_pred             CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..+|.|++.....+..+.      ....+++++.++|||||+++|
T Consensus       247 ~~~~D~v~~~~vl~~~~~~------~~~~~l~~~~~~L~pgG~l~i  286 (360)
T 1tw3_A          247 PRKADAIILSFVLLNWPDH------DAVRILTRCAEALEPGGRILI  286 (360)
T ss_dssp             SSCEEEEEEESCGGGSCHH------HHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCccEEEEcccccCCCHH------HHHHHHHHHHHhcCCCcEEEE
Confidence            2349988876543222111      013899999999999998875

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.46  E-value=2.2e-13  Score=121.27  Aligned_cols=114  Identities=10%  Similarity=-0.042  Sum_probs=83.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC--EEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN--IHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n--i~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+|||+|||+|.+++.+++.  + .+|+|||+|+.+++.|++|++.+++.+  ++++++|+.+.+..... .+..||+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~--g-a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~-~~~~fD~  228 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER-RGSTYDI  228 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH-HTCCBSE
T ss_pred             CCCcEEEcccccCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHh-cCCCceE
Confidence            3579999999999999999986  4 479999999999999999999998864  99999999875432210 1367999


Q ss_pred             EEEeCCCCchh-hh-hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFK-KK-HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~-~~-~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+++.|--... .. ..........+++++.++|+|||.+++
T Consensus       229 Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli  270 (332)
T 2igt_A          229 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLV  270 (332)
T ss_dssp             EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEE
T ss_pred             EEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEE
Confidence            98865421000 00 000011235899999999999999664

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.46  E-value=1.6e-13  Score=117.03  Aligned_cols=96  Identities=18%  Similarity=0.211  Sum_probs=75.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.  + .+++|+|+|+.+++.|+++..    .+  ++.+|+.+     .+..+++||.|+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~-~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~-----~~~~~~~fD~v~  119 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--G-FEVVLVDPSKEMLEVAREKGV----KN--VVEAKAED-----LPFPSGAFEAVL  119 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--T-CEEEEEESCHHHHHHHHHHTC----SC--EEECCTTS-----CCSCTTCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--C-CeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHH-----CCCCCCCEEEEE
Confidence            4689999999999999999987  4 589999999999999987643    23  88889876     333468899987


Q ss_pred             EeCCC-CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPD-PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~-~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..... .+..+        ...+++++.++|||||.+++
T Consensus       120 ~~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~  150 (260)
T 2avn_A          120 ALGDVLSYVEN--------KDKAFSEIRRVLVPDGLLIA  150 (260)
T ss_dssp             ECSSHHHHCSC--------HHHHHHHHHHHEEEEEEEEE
T ss_pred             Ecchhhhcccc--------HHHHHHHHHHHcCCCeEEEE
Confidence            65421 11111        15999999999999999875

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.45  E-value=2.5e-13  Score=122.89  Aligned_cols=113  Identities=23%  Similarity=0.137  Sum_probs=86.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.+++.+++.  . .+|+|+|+|+.+++.|+++++.++++|++++++|+.+.++.... .+..+|.|+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~-~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~-~~~~fD~Ii  284 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--F-REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK-EGERFDLVV  284 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--E-EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--C-CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHh-cCCCeeEEE
Confidence            4679999999999999999998  4 58999999999999999999999988899999999875543321 246899998


Q ss_pred             EeCCCCchhhh--hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKK--HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~--~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..|-- ....  .......+..+++.+.++|+|||.+++
T Consensus       285 ~dpP~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  323 (382)
T 1wxx_A          285 LDPPAF-AKGKKDVERAYRAYKEVNLRAIKLLKEGGILAT  323 (382)
T ss_dssp             ECCCCS-CCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ECCCCC-CCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            765431 1000  000011235799999999999999875

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.45  E-value=4.1e-13  Score=119.03  Aligned_cols=104  Identities=15%  Similarity=0.246  Sum_probs=80.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.++..+++. +. .+|+|+|+| .+++.|+++++.+++. +++++.+|+.+     .+.+++.+|+|
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~-g~-~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~~~D~I  109 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH-GA-KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLED-----VHLPFPKVDII  109 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CC-SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTT-----SCCSSSCEEEE
T ss_pred             CCCEEEEecCccHHHHHHHHHC-CC-CEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhh-----ccCCCCcccEE
Confidence            3579999999999999999987 33 589999999 5999999999988884 69999999986     23335789998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +.........     .......+++++.++|||||.++
T Consensus       110 vs~~~~~~l~-----~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          110 ISEWMGYFLL-----YESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EECCCBTTBS-----TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEeCchhhcc-----cHHHHHHHHHHHHhhcCCCeEEE
Confidence            8753211100     01122588999999999999986

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.45  E-value=2.7e-14  Score=121.11  Aligned_cols=107  Identities=16%  Similarity=0.152  Sum_probs=78.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-----------------------------
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-----------------------------  174 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-----------------------------  174 (241)
                      ++.+|||||||+|.++..+++...  .+|+|+|+|+.+++.++++++..+.                             
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            467899999999999999888754  3799999999999999988754320                             


Q ss_pred             CCE-EEEEccccchHHhhccCCCCcEeEEEEeCCCC----chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          175 SNI-HFLFANASVSFKQLVSSYPGPLMLVSILCPDP----HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       175 ~ni-~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~----~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++ +++.+|+.+..+ ..+..+++||+|+..+...    +..+.        ..+++++.++|||||.+++
T Consensus       134 ~~v~~~~~~d~~~~~~-~~~~~~~~fD~v~~~~~l~~~~~~~~~~--------~~~l~~~~~~LkpgG~li~  196 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQP-LGGVSLPPADCLLSTLCLDAACPDLPAY--------RTALRNLGSLLKPGGFLVM  196 (265)
T ss_dssp             HHEEEEEECCTTSSST-TTTCCCCCEEEEEEESCHHHHCSSHHHH--------HHHHHHHHTTEEEEEEEEE
T ss_pred             hhheeEEEeeeccCCC-CCccccCCccEEEEhhhhhhhcCChHHH--------HHHHHHHHhhCCCCcEEEE
Confidence            027 899999976311 0111127899998765432    22122        4899999999999999875

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.45  E-value=3.1e-13  Score=125.04  Aligned_cols=115  Identities=16%  Similarity=0.102  Sum_probs=88.5

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+|||+|..+..+++..++.+.|+|+|+|+.+++.+++|+++.|+.|+.++++|+.+....    .++.||.|
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~----~~~~FD~I  179 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH----FSGFFDRI  179 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH----HTTCEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh----ccccCCEE
Confidence            35789999999999999999988654379999999999999999999999999999999999763222    25789999


Q ss_pred             EEeCCCC-------chhhhh-------hhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDP-------HFKKKH-------HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~-------~~~~~~-------~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..|-.       .++...       ..-...+..+|+++.++|||||+|++
T Consensus       180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY  232 (456)
T 3m4x_A          180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIY  232 (456)
T ss_dssp             EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            9876510       000000       00012456899999999999999863

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.44  E-value=2.7e-13  Score=117.98  Aligned_cols=98  Identities=9%  Similarity=-0.002  Sum_probs=82.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.+++.++++..  .+|+++|+||.+++.+++|++.+++. +++++++|+.+.     . ..+.+|.|
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~-----~-~~~~~D~V  196 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF-----P-GENIADRI  196 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC-----C-CCSCEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHh-----c-cccCCCEE
Confidence            378999999999999999998743  48999999999999999999999986 499999999762     1 25779998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++.|...            ..++..+.++|||||.+.+
T Consensus       197 i~~~p~~~------------~~~l~~a~~~lk~gG~ih~  223 (278)
T 3k6r_A          197 LMGYVVRT------------HEFIPKALSIAKDGAIIHY  223 (278)
T ss_dssp             EECCCSSG------------GGGHHHHHHHEEEEEEEEE
T ss_pred             EECCCCcH------------HHHHHHHHHHcCCCCEEEE
Confidence            88765321            2788889999999998853

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.44  E-value=4.6e-13  Score=130.45  Aligned_cols=106  Identities=16%  Similarity=0.180  Sum_probs=83.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh------CCCCEEEEEccccchHHhhccCCCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL------ALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~------~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      ++.+|||||||+|.++..+++..+...+|+|||+|+.|++.|+++++..      ++.+++++++|+.+     ++..++
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d-----Lp~~d~  795 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE-----FDSRLH  795 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS-----CCTTSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh-----CCcccC
Confidence            4689999999999999999998732168999999999999999977643      55689999999987     343468


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .||.|+....-.|..+..      ...+++++.++|||| .++|
T Consensus       796 sFDlVV~~eVLeHL~dp~------l~~~L~eI~RvLKPG-~LII  832 (950)
T 3htx_A          796 DVDIGTCLEVIEHMEEDQ------ACEFGEKVLSLFHPK-LLIV  832 (950)
T ss_dssp             SCCEEEEESCGGGSCHHH------HHHHHHHHHHTTCCS-EEEE
T ss_pred             CeeEEEEeCchhhCChHH------HHHHHHHHHHHcCCC-EEEE
Confidence            899998766544433211      136899999999999 5553

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.44  E-value=7.7e-13  Score=118.22  Aligned_cols=102  Identities=20%  Similarity=0.257  Sum_probs=79.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.++..+++. +. .+|+|+|+|+ +++.|+++++.+++ ++++++.+|+.+     .+ .++.+|+|
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~-g~-~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~-----~~-~~~~~D~I  120 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQA-GA-RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE-----VS-LPEQVDII  120 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTT-----CC-CSSCEEEE
T ss_pred             CcCEEEEcCCCccHHHHHHHhC-CC-CEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhh-----CC-CCCceeEE
Confidence            4689999999999999999986 33 5899999996 88999999998888 589999999976     22 24679998


Q ss_pred             EEeCCCC-chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDP-HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~-~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +...... +...       .....+.++.++|||||.+++
T Consensus       121 vs~~~~~~~~~~-------~~~~~l~~~~~~LkpgG~li~  153 (348)
T 2y1w_A          121 ISEPMGYMLFNE-------RMLESYLHAKKYLKPSGNMFP  153 (348)
T ss_dssp             EECCCBTTBTTT-------SHHHHHHHGGGGEEEEEEEES
T ss_pred             EEeCchhcCChH-------HHHHHHHHHHhhcCCCeEEEE
Confidence            8754321 1111       113677889999999999874

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.43  E-value=5.7e-13  Score=124.09  Aligned_cols=114  Identities=19%  Similarity=0.260  Sum_probs=87.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|..+..+++..++.+.|+|+|+|+.+++.+++++++.|+.|+.++++|+.+. +..   .++.||.|+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~-~~~---~~~~fD~Il  192 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVF-GAA---VPEMFDAIL  192 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTH-HHH---STTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHh-hhh---ccccCCEEE
Confidence            4789999999999999999998753379999999999999999999999998999999999863 211   357899998


Q ss_pred             EeCCCC---ch-hhhhhhc----------ccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDP---HF-KKKHHKR----------RVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~---~~-~~~~~~~----------r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..|-.   .. +......          ...+..+|+++.++|||||+|++
T Consensus       193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvy  244 (479)
T 2frx_A          193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY  244 (479)
T ss_dssp             EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            864421   00 0000000          11356899999999999999874

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.43  E-value=4e-13  Score=114.70  Aligned_cols=101  Identities=13%  Similarity=0.083  Sum_probs=81.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCC-cEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPG-PLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~-~~d~  201 (241)
                      ++.+|||||||+|.+++.+++..+. ..|+|+|+++.+++.|++|++.+++. +++++.+|+.+.+      .+. .||.
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~------~~~~~~D~   93 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTA-SFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI------EKKDAIDT   93 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC------CGGGCCCE
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc------CccccccE
Confidence            3689999999999999999998877 78999999999999999999999986 4999999997631      123 5898


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++.-...          .+...++.+..+.|+++|+|++
T Consensus        94 IviagmGg----------~lI~~IL~~~~~~L~~~~~lIl  123 (244)
T 3gnl_A           94 IVIAGMGG----------TLIRTILEEGAAKLAGVTKLIL  123 (244)
T ss_dssp             EEEEEECH----------HHHHHHHHHTGGGGTTCCEEEE
T ss_pred             EEEeCCch----------HHHHHHHHHHHHHhCCCCEEEE
Confidence            76532110          1224889999999999998874

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.43  E-value=6.7e-13  Score=119.66  Aligned_cols=101  Identities=14%  Similarity=0.006  Sum_probs=83.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+| |+|.++..+++..+. .+|+|+|+|+.|++.|+++++.+|+.+++++.+|+.+.++.   ..+++||.|+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~---~~~~~fD~Vi  246 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPD---YALHKFDTFI  246 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCT---TTSSCBSEEE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchh---hccCCccEEE
Confidence            468999999 999999999998876 68999999999999999999998887899999999763211   1246899999


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCE
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGK  238 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~  238 (241)
                      ++.|-....         ...+++++.++|||||+
T Consensus       247 ~~~p~~~~~---------~~~~l~~~~~~LkpgG~  272 (373)
T 2qm3_A          247 TDPPETLEA---------IRAFVGRGIATLKGPRC  272 (373)
T ss_dssp             ECCCSSHHH---------HHHHHHHHHHTBCSTTC
T ss_pred             ECCCCchHH---------HHHHHHHHHHHcccCCe
Confidence            876532110         25899999999999994

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.43  E-value=4.3e-13  Score=113.55  Aligned_cols=102  Identities=18%  Similarity=0.128  Sum_probs=81.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|+|||||+|.+++.+++..+. .+|+|+|+++.+++.|++|++.+++. +++++.+|+.+.+    . ++..||.|
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~-~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~----~-~~~~~D~I   94 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYC-DFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF----E-EADNIDTI   94 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC----C-GGGCCCEE
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc----c-cccccCEE
Confidence            3689999999999999999998877 78999999999999999999999986 5999999998631    1 12368987


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.-...          .+...++....+.|+++|+|++
T Consensus        95 viaGmGg----------~lI~~IL~~~~~~l~~~~~lIl  123 (230)
T 3lec_A           95 TICGMGG----------RLIADILNNDIDKLQHVKTLVL  123 (230)
T ss_dssp             EEEEECH----------HHHHHHHHHTGGGGTTCCEEEE
T ss_pred             EEeCCch----------HHHHHHHHHHHHHhCcCCEEEE
Confidence            6532110          0224888889999999998874

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.43  E-value=7.6e-13  Score=122.66  Aligned_cols=114  Identities=19%  Similarity=0.169  Sum_probs=87.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+|||+|..+..+++..++.+.|+|+|+|+.+++.+++++++.|+. +.++++|+.+....    .++.||.|
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~----~~~~FD~I  174 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEA----FGTYFHRV  174 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHH----HCSCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhh----ccccCCEE
Confidence            35789999999999999999998764479999999999999999999999998 99999999763211    25789999


Q ss_pred             EEeCCC---------Cchhhh-----hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPD---------PHFKKK-----HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~---------~~~~~~-----~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..|-         |.....     ...-...+..+++++.++|||||+|++
T Consensus       175 l~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvy  227 (464)
T 3m6w_A          175 LLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVY  227 (464)
T ss_dssp             EEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            886542         110000     000011347899999999999999863

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.43  E-value=5.7e-13  Score=120.25  Aligned_cols=110  Identities=22%  Similarity=0.190  Sum_probs=82.7

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||+|||+|.+++.+++..+. ++|+|+|+|+.|++.|+++++..|+ .+++++++|+.+     .+.+++++|.
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~-----~~~~~~~fD~  289 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ-----LSQYVDSVDF  289 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG-----GGGTCSCEEE
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh-----CCcccCCcCE
Confidence            34789999999999999999998765 5799999999999999999999998 589999999987     2334578999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEE
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV  239 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l  239 (241)
                      |+.+.|-............++..+++++.++| +|+.+
T Consensus       290 Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~  326 (373)
T 3tm4_A          290 AISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGV  326 (373)
T ss_dssp             EEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEE
T ss_pred             EEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEE
Confidence            99886521100000011124568999999988 44333

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.43  E-value=6.5e-13  Score=120.61  Aligned_cols=115  Identities=13%  Similarity=0.013  Sum_probs=86.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-C-CEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-S-NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~-ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+|||+|||+|.+++.+++.. . .+|+|+|+|+.+++.|++|++.+++ + +++++.+|+.+.++.... .+..||.
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g-~-~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~-~~~~fD~  296 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG-C-SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-RGEKFDV  296 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH-TTCCEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC-C-CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh-cCCCCCE
Confidence            46899999999999999999974 3 4899999999999999999999998 6 899999999875443221 1467999


Q ss_pred             EEEeCCCCch-hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHF-KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~-~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++..|--.. +.........+..++.++.++|+|||.+++
T Consensus       297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  337 (396)
T 3c0k_A          297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLT  337 (396)
T ss_dssp             EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            8887543100 000000011235889999999999999875

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.42  E-value=6.2e-13  Score=117.36  Aligned_cols=100  Identities=14%  Similarity=0.105  Sum_probs=82.2

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      .+|||||||+|.++..+++++|+ .+++++|+ +.+++.|++++.+.++ ++++++.+|+.+.       .+..+|.|++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~D~v~~  239 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPS-ARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE-------VPSNGDIYLL  239 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC-------CCSSCSEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCCC-CEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC-------CCCCCCEEEE
Confidence            89999999999999999999998 89999999 9999999998877665 4799999999651       2467999887


Q ss_pred             eCCCC-chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDP-HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~-~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..... |.+..       ...+++++.+.|||||+++|
T Consensus       240 ~~vl~~~~~~~-------~~~~l~~~~~~L~pgG~l~i  270 (334)
T 2ip2_A          240 SRIIGDLDEAA-------SLRLLGNCREAMAGDGRVVV  270 (334)
T ss_dssp             ESCGGGCCHHH-------HHHHHHHHHHHSCTTCEEEE
T ss_pred             chhccCCCHHH-------HHHHHHHHHHhcCCCCEEEE
Confidence            65432 22111       14899999999999999875

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.42  E-value=6.8e-13  Score=120.00  Aligned_cols=103  Identities=17%  Similarity=0.227  Sum_probs=79.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.+++..++....  +|+|||.|+ +++.|+++++.+++. +|+++.+|+.+     +. .+..+|+|
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~-----~~-lpe~~Dvi  153 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVET-----VE-LPEQVDAI  153 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTT-----CC-CSSCEEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeee-----ec-CCccccEE
Confidence            3689999999999999988887554  899999996 889999999999985 59999999986     23 35789988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +........     ........++....++|||||.++
T Consensus       154 vsE~~~~~l-----~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          154 VSEWMGYGL-----LHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             ECCCCBTTB-----TTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             Eeecccccc-----cccchhhhHHHHHHhhCCCCceEC
Confidence            753211100     001133588888899999999986

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.42  E-value=5.7e-13  Score=120.90  Aligned_cols=115  Identities=13%  Similarity=0.102  Sum_probs=86.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.+++.+++.. . .+|+|+|+|+.+++.|+++++.+++. |++++.+|+.+.++.... .+..||.|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g-~-~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~V  293 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAG-A-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK-KGEKFDIV  293 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH-TTCCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCC-C-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh-hCCCCCEE
Confidence            46899999999999999999873 3 48999999999999999999999986 899999999875443221 24689999


Q ss_pred             EEeCCCCch-hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHF-KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~-~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..|--.. +............+++++.++|+|||.+++
T Consensus       294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~  333 (396)
T 2as0_A          294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT  333 (396)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            886543110 000000011235889999999999998864

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.42  E-value=4.4e-13  Score=115.61  Aligned_cols=106  Identities=8%  Similarity=0.008  Sum_probs=72.4

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      ....++.+|||||||+|.++..++++  + .+|+|+|+|+.|++.|+++++..      ++..|+.+.........++.|
T Consensus        41 l~l~~g~~VLDlGcGtG~~a~~La~~--g-~~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~~~~~~f  111 (261)
T 3iv6_A           41 ENIVPGSTVAVIGASTRFLIEKALER--G-ASVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPKELAGHF  111 (261)
T ss_dssp             TTCCTTCEEEEECTTCHHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCGGGTTCC
T ss_pred             cCCCCcCEEEEEeCcchHHHHHHHhc--C-CEEEEEECCHHHHHHHHHHHHhc------cceeeeeecccccccccCCCc
Confidence            33345789999999999999999997  4 57999999999999999876433      222333221000001125789


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|+.+..-.+....      -...+++++.++| |||++++
T Consensus       112 D~Vv~~~~l~~~~~~------~~~~~l~~l~~lL-PGG~l~l  146 (261)
T 3iv6_A          112 DFVLNDRLINRFTTE------EARRACLGMLSLV-GSGTVRA  146 (261)
T ss_dssp             SEEEEESCGGGSCHH------HHHHHHHHHHHHH-TTSEEEE
T ss_pred             cEEEEhhhhHhCCHH------HHHHHHHHHHHhC-cCcEEEE
Confidence            999877543322110      1147899999999 9999875

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.41  E-value=3.4e-13  Score=110.08  Aligned_cols=105  Identities=13%  Similarity=0.212  Sum_probs=73.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCC--CCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchH-------------
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNP--DSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSF-------------  188 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p--~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~-------------  188 (241)
                      ++.+|||||||+|.++..++++++  . ++|+|+|+|+.+           ..++++++++|+.+..             
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~-~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~   89 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERTKNYK-NKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNM   89 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHTTTSC-EEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC---------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHcCCCC-ceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccc
Confidence            367899999999999999999987  5 799999999931           2367999999997531             


Q ss_pred             ------Hhhcc-CCCCcEeEEEEeCCCCch----hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          189 ------KQLVS-SYPGPLMLVSILCPDPHF----KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       189 ------~~~~~-~~~~~~d~V~~~~~~~~~----~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                            ..+.. ..+.+||.|+.....++.    .+ +.........+++++.++|||||.+++
T Consensus        90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d-~~~~~~~~~~~l~~~~~~LkpgG~lv~  152 (201)
T 2plw_A           90 NNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDD-HLNSCELTLSITHFMEQYINIGGTYIV  152 (201)
T ss_dssp             --CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHH-HHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccC-HHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence                  00000 135689999876543221    11 101111224689999999999999875

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.41  E-value=1.4e-12  Score=113.14  Aligned_cols=108  Identities=10%  Similarity=0.029  Sum_probs=74.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeC-CHHHHHHHHHHH-----HHhCCC-----CEEEEEccccchHHhhc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEI-RQKLVKRAEFWV-----QELALS-----NIHFLFANASVSFKQLV  192 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDi-s~~~v~~a~~~~-----~~~~l~-----ni~~~~~D~~~~~~~~~  192 (241)
                      ++.+|||||||+|.+++.+++.. . .+|+|+|+ |+.+++.|++++     +.+++.     +++++..|..+....+.
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~-~-~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  156 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAG-A-DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ  156 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTT-C-SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcC-C-CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence            46799999999999999998863 2 48999999 899999999999     555543     68888666443211221


Q ss_pred             cC-CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccc---c--CCEEEc
Q 026219          193 SS-YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM---P--GGKVYF  241 (241)
Q Consensus       193 ~~-~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lk---p--GG~l~~  241 (241)
                      .. .++.||+|+......+...        ...+++.+.++|+   |  ||.+++
T Consensus       157 ~~~~~~~fD~Ii~~dvl~~~~~--------~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          157 RCTGLQRFQVVLLADLLSFHQA--------HDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             HHHSCSSBSEEEEESCCSCGGG--------HHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             hhccCCCCCEEEEeCcccChHH--------HHHHHHHHHHHhcccCCCCCCEEEE
Confidence            10 2578998876443222222        2589999999999   9  998754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.40  E-value=4.7e-13  Score=105.69  Aligned_cols=104  Identities=13%  Similarity=0.155  Sum_probs=74.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchH-----HhhccCCCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSF-----KQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~-----~~~~~~~~~  197 (241)
                      ++.+|||+|||+|.++..+++.+ ++ .+++|+|+++ +++.          .+++++.+|+.+..     +..+  .++
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~--~~~   87 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERV--GDS   87 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHH--TTC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccC--CCC
Confidence            46799999999999999999984 65 7999999999 6532          57999999997631     1112  357


Q ss_pred             cEeEEEEeCCCCchhhh---hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKK---HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~---~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +||.|+.+.+..+....   +.........+++++.++|+|||.+++
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  134 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV  134 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence            89999886543322111   001111225899999999999999875

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.40  E-value=2.6e-12  Score=118.69  Aligned_cols=117  Identities=16%  Similarity=0.222  Sum_probs=87.5

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ..++.+|||+|||+|..+..+++..++.+.|+|+|+|+.+++.+++++++.|++|++++++|+.+..+.   ..++.||.
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~---~~~~~fD~  333 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI---IGEEVADK  333 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS---SCSSCEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh---hccCCCCE
Confidence            335689999999999999999998764468999999999999999999999998999999999762110   12377999


Q ss_pred             EEEeCCCCc-------hhhh-----h--hhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPH-------FKKK-----H--HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~-------~~~~-----~--~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++..|-..       ++..     .  ..-...+..+++++.++|||||.+++
T Consensus       334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy  387 (450)
T 2yxl_A          334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLY  387 (450)
T ss_dssp             EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            988643210       0000     0  00001236899999999999999874

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.39  E-value=5.6e-13  Score=110.15  Aligned_cols=97  Identities=13%  Similarity=0.119  Sum_probs=75.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.  + .+++|+|+|+.+++.++++.       .+++.+|+.+..   .+..++.||.|+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~---~~~~~~~fD~v~   98 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKEN--G-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMD---MPYEEEQFDCVI   98 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTT--T-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCC---CCSCTTCEEEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcC---CCCCCCccCEEE
Confidence            4689999999999999999987  4 58999999999999987532       378889986420   222457899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+..+.        ..+++++.++|+|||.+++
T Consensus        99 ~~~~l~~~~~~--------~~~l~~~~~~L~~gG~l~~  128 (230)
T 3cc8_A           99 FGDVLEHLFDP--------WAVIEKVKPYIKQNGVILA  128 (230)
T ss_dssp             EESCGGGSSCH--------HHHHHHTGGGEEEEEEEEE
T ss_pred             ECChhhhcCCH--------HHHHHHHHHHcCCCCEEEE
Confidence            76544333222        4899999999999999875

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.39  E-value=1.8e-12  Score=117.95  Aligned_cols=108  Identities=19%  Similarity=0.194  Sum_probs=81.5

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||+|||+|.+++.+++.  + ..|+|+|+|+.+++.|++|++.+++.+ ++.++|+.+.++..    ++.||.|++
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~--g-a~V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l~~~----~~~fD~Ii~  286 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK--G-AYALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTLRGL----EGPFHHVLL  286 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHHHTC----CCCEEEEEE
T ss_pred             CCeEEEcccchhHHHHHHHHc--C-CeEEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHHHHh----cCCCCEEEE
Confidence            689999999999999999996  3 459999999999999999999998863 57799998754332    344999988


Q ss_pred             eCCCCchhhhh--hhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKH--HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~--~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.|. +.+.+.  ......+..+++.+.++|+|||.+++
T Consensus       287 dpP~-f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~  324 (393)
T 4dmg_A          287 DPPT-LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWL  324 (393)
T ss_dssp             CCCC-CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCc-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            7543 111000  01111335899999999999999873

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.39  E-value=1.9e-12  Score=125.77  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=86.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+|||+|||+|.+++.+++...  .+|+++|+|+.+++.|++|++.+++.  +++++++|+.+.++.    .++.||.
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~----~~~~fD~  612 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE----ANEQFDL  612 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH----CCCCEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh----cCCCccE
Confidence            368999999999999999998643  47999999999999999999999986  799999999875433    2578999


Q ss_pred             EEEeCCCCchhhhh----hhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKH----HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~----~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++..|.- .+...    ......+..+++.+.++|+|||.|++
T Consensus       613 Ii~DPP~f-~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~  655 (703)
T 3v97_A          613 IFIDPPTF-SNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMF  655 (703)
T ss_dssp             EEECCCSB-C-------CCBHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCccc-cCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            98876531 00000    01112346889999999999999975

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.39  E-value=9.5e-13  Score=117.19  Aligned_cols=94  Identities=16%  Similarity=0.194  Sum_probs=79.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.+++. ++  +. .+|+|+|+|+.+++.|++|++.+++ .+++++++|+.+.        ...+|.|
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~--~~-~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~--------~~~fD~V  262 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK--NA-KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV--------DVKGNRV  262 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT--TS-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC--------CCCEEEE
T ss_pred             CCCEEEEccCccCHHHHh-cc--CC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh--------cCCCcEE
Confidence            468999999999999999 87  34 6899999999999999999999998 5899999999762        1679998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++.|.- .           ..+++.+.++|+|||.+++
T Consensus       263 i~dpP~~-~-----------~~~l~~~~~~L~~gG~l~~  289 (336)
T 2yx1_A          263 IMNLPKF-A-----------HKFIDKALDIVEEGGVIHY  289 (336)
T ss_dssp             EECCTTT-G-----------GGGHHHHHHHEEEEEEEEE
T ss_pred             EECCcHh-H-----------HHHHHHHHHHcCCCCEEEE
Confidence            8764321 1           2789999999999998864

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.39  E-value=1.1e-12  Score=122.17  Aligned_cols=103  Identities=18%  Similarity=0.230  Sum_probs=79.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.+++.+++. +. .+|+|+|+|+ +++.|+++++.+++ ++++++.+|+.+     .+ .++.||+|
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~-~~-~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~-----~~-~~~~fD~I  228 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQA-GA-RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE-----VS-LPEQVDII  228 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHT-TC-SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT-----CC-CSSCEEEE
T ss_pred             CCCEEEEecCcccHHHHHHHHc-CC-CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh-----Cc-cCCCeEEE
Confidence            4679999999999999999884 44 6899999999 99999999999988 589999999976     22 24689998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +...+..+....      -....+..+.++|||||.+++
T Consensus       229 vs~~~~~~~~~e------~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          229 ISEPMGYMLFNE------RMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             ECCCCHHHHTCH------HHHHHHHHGGGGEEEEEEEES
T ss_pred             EEeCchHhcCcH------HHHHHHHHHHHhcCCCCEEEE
Confidence            875431111000      013567788999999999874

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.38  E-value=6.5e-13  Score=110.32  Aligned_cols=90  Identities=18%  Similarity=0.228  Sum_probs=72.5

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||||||+|.++..+++.       +|+|+|+.+++.++++       +++++.+|+.+     .+..++.+|+|+.
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~-----~~~~~~~fD~v~~  108 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAEN-----LPLKDESFDFALM  108 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTB-----CCSCTTCEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEccccc-----CCCCCCCeeEEEE
Confidence            689999999999999887543       8999999999998774       68899999875     2334678999987


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .....+..+.        ..+++++.++|+|||.+++
T Consensus       109 ~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~i  137 (219)
T 1vlm_A          109 VTTICFVDDP--------ERALKEAYRILKKGGYLIV  137 (219)
T ss_dssp             ESCGGGSSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             cchHhhccCH--------HHHHHHHHHHcCCCcEEEE
Confidence            7654333222        4899999999999999875

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.37  E-value=1.2e-12  Score=105.17  Aligned_cols=98  Identities=14%  Similarity=0.244  Sum_probs=71.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.++..++++.    +|+|+|+|+.|++.         ..+++++++|+.+.    .  .+++||.|+
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~----~--~~~~fD~i~   83 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES---------HRGGNLVRADLLCS----I--NQESVDVVV   83 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT---------CSSSCEEECSTTTT----B--CGGGCSEEE
T ss_pred             CCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc---------ccCCeEEECChhhh----c--ccCCCCEEE
Confidence            46799999999999999999875    69999999999987         25789999999762    2  247899998


Q ss_pred             EeCCCCchhhhh-hhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKH-HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~-~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.+-.+..+.. .....-...+++++.+.| |||.+++
T Consensus        84 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~  121 (170)
T 3q87_B           84 FNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYL  121 (170)
T ss_dssp             ECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEE
T ss_pred             ECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEE
Confidence            876543211110 000001137888888888 9999875

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.36  E-value=2.9e-12  Score=116.01  Aligned_cols=100  Identities=12%  Similarity=0.009  Sum_probs=83.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh---------------CCCCEEEEEccccchHH
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL---------------ALSNIHFLFANASVSFK  189 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~---------------~l~ni~~~~~D~~~~~~  189 (241)
                      +.+|||+|||+|..++.++++.+. .+|+++|+++++++.+++|++.+               ++.+++++++|+.+...
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~-~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPA-EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSC-SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            689999999999999999998776 68999999999999999999998               87779999999987433


Q ss_pred             hhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          190 QLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       190 ~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..    ...||.|++..+..            ...+++.+.+.|||||.+++
T Consensus       127 ~~----~~~fD~I~lDP~~~------------~~~~l~~a~~~lk~gG~l~v  162 (378)
T 2dul_A          127 ER----HRYFHFIDLDPFGS------------PMEFLDTALRSAKRRGILGV  162 (378)
T ss_dssp             HS----TTCEEEEEECCSSC------------CHHHHHHHHHHEEEEEEEEE
T ss_pred             hc----cCCCCEEEeCCCCC------------HHHHHHHHHHhcCCCCEEEE
Confidence            22    35799888542211            14899999999999998864

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.36  E-value=1.2e-12  Score=113.70  Aligned_cols=105  Identities=17%  Similarity=0.185  Sum_probs=76.3

Q ss_pred             CCcEEEEcCCccH----HHHHHHHHCC----CCcEEEEEeCCHHHHHHHHHHHH--------------H---------hC
Q 026219          125 LPLMVDIGSGSGR----FLIWLARRNP----DSGNYLGLEIRQKLVKRAEFWVQ--------------E---------LA  173 (241)
Q Consensus       125 ~~~VLDIGCGtG~----~~~~la~~~p----~~~~v~giDis~~~v~~a~~~~~--------------~---------~~  173 (241)
                      ..+|+|+|||||.    +++.+++..+    + .+|+|+|+|++|++.|++++.              +         .+
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~-~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGR-WKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTS-EEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCC-eEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            4689999999998    6666777644    3 689999999999999998641              0         00


Q ss_pred             -------C-CCEEEEEccccchHHhhccCC-CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          174 -------L-SNIHFLFANASVSFKQLVSSY-PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       174 -------l-~ni~~~~~D~~~~~~~~~~~~-~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                             + .++.|.++|+.+     .+.+ ++.||+|++.....++...      .++.+++++++.|+|||.+++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~-----~~~~~~~~fDlI~crnvliyf~~~------~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLE-----KQYNVPGPFDAIFCRNVMIYFDKT------TQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTC-----SSCCCCCCEEEEEECSSGGGSCHH------HHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeechhhcccCeEEecccCC-----CCCCcCCCeeEEEECCchHhCCHH------HHHHHHHHHHHHhCCCcEEEE
Confidence                   0 268999999875     1111 4789999875433333221      225999999999999999985

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.35  E-value=3.4e-12  Score=114.96  Aligned_cols=100  Identities=15%  Similarity=0.143  Sum_probs=76.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC--------
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY--------  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~--------  195 (241)
                      .+.+|||+|||+|.+++.+++..   .+|+|+|+|+.+++.|++|++.++++|++++.+|+.+.++.+....        
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~  289 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI  289 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGS
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccc
Confidence            35789999999999999999853   4799999999999999999999999899999999987554332100        


Q ss_pred             ---CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          196 ---PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       196 ---~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                         +..+|.|++..|-.              .+.+++.+.|+++|.++
T Consensus       290 ~~~~~~fD~Vv~dPPr~--------------g~~~~~~~~l~~~g~iv  323 (369)
T 3bt7_A          290 DLKSYQCETIFVDPPRS--------------GLDSETEKMVQAYPRIL  323 (369)
T ss_dssp             CGGGCCEEEEEECCCTT--------------CCCHHHHHHHTTSSEEE
T ss_pred             ccccCCCCEEEECcCcc--------------ccHHHHHHHHhCCCEEE
Confidence               13799888764321              23344566667888775

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.35  E-value=7.3e-12  Score=102.67  Aligned_cols=93  Identities=12%  Similarity=0.135  Sum_probs=74.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.++..+++...  .+++|+|+|+.+++.++++++.+++ +++++++|+.+     +   +..+|.|+
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~-----~---~~~~D~v~  117 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSE-----F---NSRVDIVI  117 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGG-----C---CCCCSEEE
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHH-----c---CCCCCEEE
Confidence            468999999999999999998743  4799999999999999999988777 89999999976     2   35799998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhcc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYL  233 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~L  233 (241)
                      ++.|-.+..      +.....+++++.++|
T Consensus       118 ~~~p~~~~~------~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          118 MNPPFGSQR------KHADRPFLLKAFEIS  141 (207)
T ss_dssp             ECCCCSSSS------TTTTHHHHHHHHHHC
T ss_pred             EcCCCcccc------CCchHHHHHHHHHhc
Confidence            886632211      122357888888888

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.34  E-value=8.6e-12  Score=114.42  Aligned_cols=115  Identities=12%  Similarity=0.142  Sum_probs=87.5

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ..++.+|||+|||+|..+..+++..++ +.|+|+|+++.+++.++++++..++ +++++++|+.+..+. +  .++.||.
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~-~--~~~~fD~  318 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQW-C--GEQQFDR  318 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHH-H--TTCCEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhh-c--ccCCCCE
Confidence            345789999999999999999999887 7999999999999999999998887 579999999864222 2  2478999


Q ss_pred             EEEeCCCCc-------hhhh-------hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPH-------FKKK-------HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~-------~~~~-------~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++..|-..       ++..       ..+-...+..+++++.++|||||++++
T Consensus       319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvy  372 (429)
T 1sqg_A          319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVY  372 (429)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            988654210       0000       000011346899999999999999874

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.33  E-value=3.2e-12  Score=111.23  Aligned_cols=83  Identities=14%  Similarity=0.177  Sum_probs=66.0

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      +.....++.+|||||||+|.++..+++..   .+|+|+|+|+.|++.++++.+..+. ++++++++|+.+     .+  .
T Consensus        22 ~~~~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~-----~~--~   91 (285)
T 1zq9_A           22 DKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK-----TD--L   91 (285)
T ss_dssp             HHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT-----SC--C
T ss_pred             HhcCCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec-----cc--c
Confidence            33333456799999999999999999983   4799999999999999998876655 589999999976     22  1


Q ss_pred             CcEeEEEEeCCCCc
Q 026219          197 GPLMLVSILCPDPH  210 (241)
Q Consensus       197 ~~~d~V~~~~~~~~  210 (241)
                      ..+|.|+.+.|-.+
T Consensus        92 ~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           92 PFFDTCVANLPYQI  105 (285)
T ss_dssp             CCCSEEEEECCGGG
T ss_pred             hhhcEEEEecCccc
Confidence            36898888876543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.33  E-value=1.2e-12  Score=119.02  Aligned_cols=99  Identities=21%  Similarity=0.255  Sum_probs=72.4

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEE--EEEccccchHHhhccCCCCcEe
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIH--FLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~--~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      .++.+|||||||+|.++..+++.  + .+|+|+|+|+.+++.|+++    +.+...  +...|+.+     .+..+++||
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~--g-~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~-----l~~~~~~fD  173 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA--G-VRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADD-----VRRTEGPAN  173 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT--T-CEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHH-----HHHHHCCEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc--C-CcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhh-----cccCCCCEE
Confidence            35689999999999999999987  4 5799999999999998764    333211  11222221     112358899


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+....-.|..+.        ..+++++.++|||||.++|
T Consensus       174 ~I~~~~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i  206 (416)
T 4e2x_A          174 VIYAANTLCHIPYV--------QSVLEGVDALLAPDGVFVF  206 (416)
T ss_dssp             EEEEESCGGGCTTH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEEECChHHhcCCH--------HHHHHHHHHHcCCCeEEEE
Confidence            99877654444333        4999999999999999975

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.33  E-value=2e-12  Score=115.22  Aligned_cols=105  Identities=13%  Similarity=0.157  Sum_probs=75.7

Q ss_pred             HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCC
Q 026219          119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      .+.-++..+|||||||+|.++..+++++|+ .+++++|+ +.++.  +++.+..+. .+++++.+|+.+.       .+ 
T Consensus       179 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~-------~p-  246 (348)
T 3lst_A          179 AGDFPATGTVADVGGGRGGFLLTVLREHPG-LQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE-------VP-  246 (348)
T ss_dssp             HSCCCSSEEEEEETCTTSHHHHHHHHHCTT-EEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC-------CC-
T ss_pred             hCCccCCceEEEECCccCHHHHHHHHHCCC-CEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC-------CC-
Confidence            333345689999999999999999999998 89999999 44544  333322333 4699999999631       13 


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+|.|++.....+..+.      ....++++++++|||||+|+|
T Consensus       247 ~~D~v~~~~vlh~~~d~------~~~~~L~~~~~~LkpgG~l~i  284 (348)
T 3lst_A          247 HADVHVLKRILHNWGDE------DSVRILTNCRRVMPAHGRVLV  284 (348)
T ss_dssp             CCSEEEEESCGGGSCHH------HHHHHHHHHHHTCCTTCEEEE
T ss_pred             CCcEEEEehhccCCCHH------HHHHHHHHHHHhcCCCCEEEE
Confidence            78988776543222111      013899999999999999975

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.32  E-value=4.6e-12  Score=109.85  Aligned_cols=109  Identities=10%  Similarity=0.145  Sum_probs=74.3

Q ss_pred             CCcEEEEcCCc--cHHHHHH-HHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHH--------hhcc
Q 026219          125 LPLMVDIGSGS--GRFLIWL-ARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFK--------QLVS  193 (241)
Q Consensus       125 ~~~VLDIGCGt--G~~~~~l-a~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~--------~~~~  193 (241)
                      ...|||||||+  |.++..+ .+..|+ .+|++||.|+.|++.|++++...+..+++++++|+.+...        ..++
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~-arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D  157 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPE-SRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD  157 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTT-CEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCC-CEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence            46899999997  3344444 445788 8999999999999999998764433479999999987411        1111


Q ss_pred             CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       ++..+ .|+++...+|..+..     -...+++++.+.|+|||.|+|
T Consensus       158 -~~~p~-av~~~avLH~l~d~~-----~p~~~l~~l~~~L~PGG~Lvl  198 (277)
T 3giw_A          158 -LTRPV-ALTVIAIVHFVLDED-----DAVGIVRRLLEPLPSGSYLAM  198 (277)
T ss_dssp             -TTSCC-EEEEESCGGGSCGGG-----CHHHHHHHHHTTSCTTCEEEE
T ss_pred             -cCCcc-hHHhhhhHhcCCchh-----hHHHHHHHHHHhCCCCcEEEE
Confidence             12333 355554444433210     013899999999999999875

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.32  E-value=7.2e-12  Score=112.08  Aligned_cols=102  Identities=20%  Similarity=0.159  Sum_probs=79.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...+|||||||+|.++..+++++|+ .+++..|. |.+++.|++++...+.++++++.+|+.+     .  +....|.++
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~-~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~-----~--~~~~~D~~~  249 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPG-CKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFK-----D--PLPEADLYI  249 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSS-CEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTT-----S--CCCCCSEEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCC-ceeEeccC-HHHHHHHHHhhhhcccCceeeecCcccc-----C--CCCCceEEE
Confidence            4578999999999999999999999 89999998 8899999988765556789999999864     1  123468877


Q ss_pred             EeCCCC-chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDP-HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~-~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +...-. |+++.-       ..+|+++++.|+|||+++|
T Consensus       250 ~~~vlh~~~d~~~-------~~iL~~~~~al~pgg~lli  281 (353)
T 4a6d_A          250 LARVLHDWADGKC-------SHLLERIYHTCKPGGGILV  281 (353)
T ss_dssp             EESSGGGSCHHHH-------HHHHHHHHHHCCTTCEEEE
T ss_pred             eeeecccCCHHHH-------HHHHHHHHhhCCCCCEEEE
Confidence            654332 332211       4889999999999999875

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.31  E-value=9e-12  Score=114.50  Aligned_cols=103  Identities=20%  Similarity=0.198  Sum_probs=79.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+|||+|.+++.+++.  . .+|+|+|+|+.+++.|+++++.++++|++|+++|+.+.++.. +..++.+|.|
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~--~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~-~~~~~~fD~V  360 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ--A-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ-PWAKNGFDKV  360 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT--S-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS-GGGTTCCSEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh--C-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhh-hhhcCCCCEE
Confidence            34679999999999999999987  4 689999999999999999999999889999999998743221 1124679998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++.|-...           ..+++.+.+ ++|++.+++
T Consensus       361 v~dPPr~g~-----------~~~~~~l~~-~~p~~ivyv  387 (433)
T 1uwv_A          361 LLDPARAGA-----------AGVMQQIIK-LEPIRIVYV  387 (433)
T ss_dssp             EECCCTTCC-----------HHHHHHHHH-HCCSEEEEE
T ss_pred             EECCCCccH-----------HHHHHHHHh-cCCCeEEEE
Confidence            876443211           255555554 688888764

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.31  E-value=3.9e-12  Score=104.39  Aligned_cols=104  Identities=13%  Similarity=0.205  Sum_probs=71.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchH--HhhccCCC----C
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSF--KQLVSSYP----G  197 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~--~~~~~~~~----~  197 (241)
                      ++.+|||+|||+|.++..++++  . +.|+|||+++..           ..++++++++|+.+..  ..+....+    +
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~--~-~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSL--A-RKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEGIE   90 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--C-SEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEEeecCCHHHHHHHHc--C-CcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence            4689999999999999999998  5 689999999851           3468999999997621  11111011    4


Q ss_pred             cEeEEEEeCCCCch---hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHF---KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~---~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .||+|+...+....   ...+.......+.+++.+.++|||||.|++
T Consensus        91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~  137 (191)
T 3dou_A           91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLL  137 (191)
T ss_dssp             SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence            89998876532110   011111122346889999999999999874

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.31  E-value=2.9e-12  Score=110.44  Aligned_cols=95  Identities=9%  Similarity=-0.040  Sum_probs=78.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH----hCCCCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE----LALSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~----~~l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ++..+|||||||+|..+..+++. +  .+|+++|+++++++.|++++..    ...++++++.+|+.+.       . ++
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~-------~-~~  139 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-------I-KK  139 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC-------C-CC
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH-------H-hh
Confidence            44579999999999999999887 4  5899999999999999886532    1225799999999762       1 67


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||+|++...+|             ..+++.+.+.|+|||.+++
T Consensus       140 fD~Ii~d~~dp-------------~~~~~~~~~~L~pgG~lv~  169 (262)
T 2cmg_A          140 YDLIFCLQEPD-------------IHRIDGLKRMLKEDGVFIS  169 (262)
T ss_dssp             EEEEEESSCCC-------------HHHHHHHHTTEEEEEEEEE
T ss_pred             CCEEEECCCCh-------------HHHHHHHHHhcCCCcEEEE
Confidence            99999887666             2589999999999999874

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.30  E-value=5.3e-12  Score=113.53  Aligned_cols=95  Identities=20%  Similarity=0.236  Sum_probs=74.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...+|||||||+|.++..+++++|+ .+++++|+ +.+++.+++      ..+++++.+|+.+.    +  +++  |.|+
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~--p~~--D~v~  266 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPS-INAINFDL-PHVIQDAPA------FSGVEHLGGDMFDG----V--PKG--DAIF  266 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC------CTTEEEEECCTTTC----C--CCC--SEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeh-HHHHHhhhh------cCCCEEEecCCCCC----C--CCC--CEEE
Confidence            4579999999999999999999999 89999999 889887643      25899999999751    2  233  8887


Q ss_pred             EeCCCC-chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDP-HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~-~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..... |....       ...+|+++++.|||||+|+|
T Consensus       267 ~~~vlh~~~~~~-------~~~~l~~~~~~L~pgG~l~i  298 (368)
T 3reo_A          267 IKWICHDWSDEH-------CLKLLKNCYAALPDHGKVIV  298 (368)
T ss_dssp             EESCGGGBCHHH-------HHHHHHHHHHHSCTTCEEEE
T ss_pred             EechhhcCCHHH-------HHHHHHHHHHHcCCCCEEEE
Confidence            765432 22211       13899999999999999875

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.28  E-value=2.8e-12  Score=116.51  Aligned_cols=98  Identities=18%  Similarity=0.229  Sum_probs=71.5

Q ss_pred             CCCcEEEEcCC------ccHHHHHHHHH-CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch-HH-hhccC
Q 026219          124 TLPLMVDIGSG------SGRFLIWLARR-NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS-FK-QLVSS  194 (241)
Q Consensus       124 ~~~~VLDIGCG------tG~~~~~la~~-~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~-~~-~~~~~  194 (241)
                      +..+|||||||      +|..++.++++ +|+ ++|+|||+|++|.         ...++++++++|+.+. +. .+. .
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~-a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~-~  284 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPR-GQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIA-R  284 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTT-CEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHH-H
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhh-c
Confidence            46899999999      77777777765 577 8999999999973         1336899999999862 11 111 1


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+++||+|+.... .+..+.        ..+|++++++|||||.++|
T Consensus       285 ~d~sFDlVisdgs-H~~~d~--------~~aL~el~rvLKPGGvlVi  322 (419)
T 3sso_A          285 RYGPFDIVIDDGS-HINAHV--------RTSFAALFPHVRPGGLYVI  322 (419)
T ss_dssp             HHCCEEEEEECSC-CCHHHH--------HHHHHHHGGGEEEEEEEEE
T ss_pred             ccCCccEEEECCc-ccchhH--------HHHHHHHHHhcCCCeEEEE
Confidence            1478999876543 222222        4899999999999999875

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.28  E-value=1.1e-11  Score=111.45  Aligned_cols=95  Identities=18%  Similarity=0.214  Sum_probs=74.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...+|||||||+|.++..+++++|+ .+++++|+ +.+++.|++      .++++++.+|+.+.    +  +++  |.|+
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~----~--p~~--D~v~  264 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPT-IKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFKE----V--PSG--DTIL  264 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC------CTTEEEEECCTTTC----C--CCC--SEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC-CeEEEecC-HHHHHhhhh------cCCeEEEeCCcCCC----C--CCC--CEEE
Confidence            4689999999999999999999999 89999999 888887643      25899999999751    2  233  8887


Q ss_pred             EeCCCC-chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDP-HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~-~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..... |..+.       ...+|+++++.|||||+|+|
T Consensus       265 ~~~vlh~~~d~~-------~~~~L~~~~~~L~pgG~l~i  296 (364)
T 3p9c_A          265 MKWILHDWSDQH-------CATLLKNCYDALPAHGKVVL  296 (364)
T ss_dssp             EESCGGGSCHHH-------HHHHHHHHHHHSCTTCEEEE
T ss_pred             ehHHhccCCHHH-------HHHHHHHHHHHcCCCCEEEE
Confidence            765432 22211       14899999999999999875

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.27  E-value=1.5e-11  Score=112.82  Aligned_cols=96  Identities=24%  Similarity=0.226  Sum_probs=76.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.+++.+++.  . .+|+|+|+|+.+++.|+++++.++++ ++++.+|+.+.    .   +..+|.|+
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~--~-~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~----~---~~~fD~Vv  358 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKR--G-FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREV----S---VKGFDTVI  358 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTC----C---CTTCSEEE
T ss_pred             CCCEEEEeeccchHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHc----C---ccCCCEEE
Confidence            3689999999999999999987  3 57999999999999999999999887 99999999862    1   22789888


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.|-..          ..+.+++.+. .|+|||.+++
T Consensus       359 ~dPPr~g----------~~~~~~~~l~-~l~p~givyv  385 (425)
T 2jjq_A          359 VDPPRAG----------LHPRLVKRLN-REKPGVIVYV  385 (425)
T ss_dssp             ECCCTTC----------SCHHHHHHHH-HHCCSEEEEE
T ss_pred             EcCCccc----------hHHHHHHHHH-hcCCCcEEEE
Confidence            7654211          1135666665 4899999885

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.27  E-value=1.1e-11  Score=111.41  Aligned_cols=96  Identities=22%  Similarity=0.295  Sum_probs=75.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...+|||||||+|.++..+++++|+ .+++++|+ +.+++.|++      .++++++.+|+.+.    +   +. +|.|+
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~---~~-~D~v~  272 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPL-IKGINFDL-PQVIENAPP------LSGIEHVGGDMFAS----V---PQ-GDAMI  272 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC------CTTEEEEECCTTTC----C---CC-EEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCC-CeEEEeCh-HHHHHhhhh------cCCCEEEeCCcccC----C---CC-CCEEE
Confidence            4679999999999999999999998 89999999 999987753      35799999999651    2   23 89988


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.....+..+.      ....++++++++|||||+++|
T Consensus       273 ~~~~lh~~~d~------~~~~~l~~~~~~L~pgG~l~i  304 (372)
T 1fp1_D          273 LKAVCHNWSDE------KCIEFLSNCHKALSPNGKVII  304 (372)
T ss_dssp             EESSGGGSCHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             EecccccCCHH------HHHHHHHHHHHhcCCCCEEEE
Confidence            76644322111      013899999999999999875

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.27  E-value=4.5e-12  Score=110.84  Aligned_cols=99  Identities=13%  Similarity=0.088  Sum_probs=68.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEE-EccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFL-FANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~-~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||||||||.++..++++. . .+|+|||+|++|++.+.++     .+++... ..|+......  ..++.+||.
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~g-a-~~V~aVDvs~~mL~~a~r~-----~~rv~~~~~~ni~~l~~~--~l~~~~fD~  154 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNG-A-KLVYAVDVGTNQLVWKLRQ-----DDRVRSMEQYNFRYAEPV--DFTEGLPSF  154 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-C-SEEEEECSSSSCSCHHHHT-----CTTEEEECSCCGGGCCGG--GCTTCCCSE
T ss_pred             ccccEEEecCCCccHHHHHHHhCC-C-CEEEEEECCHHHHHHHHHh-----CcccceecccCceecchh--hCCCCCCCE
Confidence            356799999999999999999873 3 4899999999999985431     1344332 3455321111  112345898


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++.....+.           ..++.++.++|||||.+++
T Consensus       155 v~~d~sf~sl-----------~~vL~e~~rvLkpGG~lv~  183 (291)
T 3hp7_A          155 ASIDVSFISL-----------NLILPALAKILVDGGQVVA  183 (291)
T ss_dssp             EEECCSSSCG-----------GGTHHHHHHHSCTTCEEEE
T ss_pred             EEEEeeHhhH-----------HHHHHHHHHHcCcCCEEEE
Confidence            8775543322           4899999999999999875

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.26  E-value=6.8e-11  Score=104.21  Aligned_cols=115  Identities=9%  Similarity=0.002  Sum_probs=82.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+|||+|..+..+++...+.+.|+|+|+++.+++.+++++++.|+.|++++++|+.+.... .. ....||.|
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~-~~-~~~~fD~V  178 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS-DP-RYHEVHYI  178 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT-CG-GGTTEEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcc-cc-ccCCCCEE
Confidence            34789999999999999999997532279999999999999999999999998999999999763111 00 01469998


Q ss_pred             EEeCCC---------Cchh-------hhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPD---------PHFK-------KKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~---------~~~~-------~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++..|-         |..+       +.-.+-...+..+|+.+.++|+ ||+++
T Consensus       179 l~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lv  231 (309)
T 2b9e_A          179 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLV  231 (309)
T ss_dssp             EECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEE
T ss_pred             EEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEE
Confidence            875331         1000       0000011245678999999887 89876

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.26  E-value=1.3e-11  Score=109.84  Aligned_cols=111  Identities=14%  Similarity=0.186  Sum_probs=83.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCC----cEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDS----GNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~----~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      .+.+|||+|||+|.++..+++..+..    .+++|+|+++.+++.|+.++...++ ++.++.+|+...      .++..|
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~------~~~~~f  202 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLAN------LLVDPV  202 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSC------CCCCCE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCc------cccCCc
Confidence            45799999999999999999876421    5799999999999999999988887 789999998751      135789


Q ss_pred             eEEEEeCCCCchhhhh-h---------hcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKH-H---------KRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~-~---------~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|+.+.|-.+..... .         ........+++.+.+.|+|||+++|
T Consensus       203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~  254 (344)
T 2f8l_A          203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  254 (344)
T ss_dssp             EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEE
Confidence            9999887632111100 0         0001223689999999999998865

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.25  E-value=2.7e-11  Score=106.14  Aligned_cols=80  Identities=13%  Similarity=0.167  Sum_probs=62.7

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      ....++.+|||||||+|.++..++++  . .+|+|+|+|+.+++.++++++..+.+|++++.+|+.+     .+  ...+
T Consensus        38 ~~~~~~~~VLDiG~G~G~lt~~La~~--~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~-----~~--~~~~  107 (299)
T 2h1r_A           38 AKIKSSDIVLEIGCGTGNLTVKLLPL--A-KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIK-----TV--FPKF  107 (299)
T ss_dssp             HCCCTTCEEEEECCTTSTTHHHHTTT--S-SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCS-----SC--CCCC
T ss_pred             cCCCCcCEEEEEcCcCcHHHHHHHhc--C-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhh-----CC--cccC
Confidence            33335689999999999999999987  3 5799999999999999999987777889999999976     22  2478


Q ss_pred             eEEEEeCCCC
Q 026219          200 MLVSILCPDP  209 (241)
Q Consensus       200 d~V~~~~~~~  209 (241)
                      |.|+.+.|-.
T Consensus       108 D~Vv~n~py~  117 (299)
T 2h1r_A          108 DVCTANIPYK  117 (299)
T ss_dssp             SEEEEECCGG
T ss_pred             CEEEEcCCcc
Confidence            9998887643

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.25  E-value=3.9e-11  Score=97.98  Aligned_cols=90  Identities=14%  Similarity=0.141  Sum_probs=68.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+|||+|.++..+++. +. .+|+|+|+|+.+++.|+++++     +++++++|+.+     +   ++.+|.|
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~-----~---~~~~D~v  114 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-GA-ESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSE-----I---SGKYDTW  114 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-TB-SEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGG-----C---CCCEEEE
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHH-----C---CCCeeEE
Confidence            35689999999999999999987 33 479999999999999988753     78999999976     2   3689999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhcc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYL  233 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~L  233 (241)
                      +.+.|-.+...      .....+++++.++|
T Consensus       115 ~~~~p~~~~~~------~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          115 IMNPPFGSVVK------HSDRAFIDKAFETS  139 (200)
T ss_dssp             EECCCC-------------CHHHHHHHHHHE
T ss_pred             EECCCchhccC------chhHHHHHHHHHhc
Confidence            88765433211      11247888888888

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.25  E-value=1.4e-11  Score=99.91  Aligned_cols=106  Identities=15%  Similarity=0.147  Sum_probs=71.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCC--------cEEEEEeCCHHHHHHHHHHHHHhCCCCEEEE-EccccchHH--hhc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDS--------GNYLGLEIRQKLVKRAEFWVQELALSNIHFL-FANASVSFK--QLV  192 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~--------~~v~giDis~~~v~~a~~~~~~~~l~ni~~~-~~D~~~~~~--~~~  192 (241)
                      ++.+|||||||+|.++..++++.+..        .+|+|+|+|+.+           ...+++++ .+|+.+...  ...
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~~   90 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRIL   90 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHHH
Confidence            36899999999999999999997532        589999999942           34678999 999865311  000


Q ss_pred             c-CCCCcEeEEEEeCCC----CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          193 S-SYPGPLMLVSILCPD----PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       193 ~-~~~~~~d~V~~~~~~----~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      . ..+.+||.|+.....    .+..+. .........+++++.++|||||.+++
T Consensus        91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~lv~  143 (196)
T 2nyu_A           91 EVLPGRRADVILSDMAPNATGFRDLDH-DRLISLCLTLLSVTPDILQPGGTFLC  143 (196)
T ss_dssp             HHSGGGCEEEEEECCCCCCCSCHHHHH-HHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             HhcCCCCCcEEEeCCCCCCCCCcccCH-HHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            1 123579999875421    111111 01111224889999999999999875

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.24  E-value=1.5e-11  Score=109.65  Aligned_cols=96  Identities=17%  Similarity=0.204  Sum_probs=74.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...+|||||||+|.++..+++++|+ .+++|+|+ +.+++.|++      .++++++.+|+.+.    +   +. +|.|+
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~---p~-~D~v~  251 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPK-LKCIVFDR-PQVVENLSG------SNNLTYVGGDMFTS----I---PN-ADAVL  251 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCC------BTTEEEEECCTTTC----C---CC-CSEEE
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCC-CeEEEeeC-HHHHhhccc------CCCcEEEeccccCC----C---CC-ccEEE
Confidence            3579999999999999999999998 89999999 999988754      25699999999641    1   22 89887


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhcccc---CCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMP---GGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lkp---GG~l~~  241 (241)
                      +.....+..+.      ....++++++++|||   ||+++|
T Consensus       252 ~~~~lh~~~d~------~~~~~l~~~~~~L~p~~~gG~l~i  286 (352)
T 1fp2_A          252 LKYILHNWTDK------DCLRILKKCKEAVTNDGKRGKVTI  286 (352)
T ss_dssp             EESCGGGSCHH------HHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred             eehhhccCCHH------HHHHHHHHHHHhCCCCCCCcEEEE
Confidence            76543322111      013899999999999   999875

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.24  E-value=2e-11  Score=110.93  Aligned_cols=101  Identities=13%  Similarity=0.041  Sum_probs=82.6

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC--EEEEEccccchHH-hhccCCCCcEeE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN--IHFLFANASVSFK-QLVSSYPGPLML  201 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n--i~~~~~D~~~~~~-~~~~~~~~~~d~  201 (241)
                      +.+|||++||+|.+++.++.+.++-..|+++|+++.+++.+++|++.+++.+  ++++.+|+.+.+. .    ....||.
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~----~~~~fD~  128 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE----WGFGFDY  128 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC----CSSCEEE
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh----hCCCCcE
Confidence            6799999999999999999975431479999999999999999999999876  9999999987543 2    2467998


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++....    .        ...+++.+.+.|+|||.|++
T Consensus       129 V~lDP~g----~--------~~~~l~~a~~~Lk~gGll~~  156 (392)
T 3axs_A          129 VDLDPFG----T--------PVPFIESVALSMKRGGILSL  156 (392)
T ss_dssp             EEECCSS----C--------CHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCc----C--------HHHHHHHHHHHhCCCCEEEE
Confidence            8876311    0        13799999999999998874

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.22  E-value=1.2e-11  Score=101.87  Aligned_cols=83  Identities=11%  Similarity=0.130  Sum_probs=65.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..++      .+++|+|+|+.               +++++.+|+.+     .+..+++||.|+
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---------------~~~~~~~d~~~-----~~~~~~~fD~v~  120 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR------NPVHCFDLASL---------------DPRVTVCDMAQ-----VPLEDESVDVAV  120 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---------------STTEEESCTTS-----CSCCTTCEEEEE
T ss_pred             CCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---------------CceEEEecccc-----CCCCCCCEeEEE
Confidence            46799999999999998862      46999999997               46788899876     333467899998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ......+ .+.        ..+++++.++|+|||.+++
T Consensus       121 ~~~~l~~-~~~--------~~~l~~~~~~L~~gG~l~i  149 (215)
T 2zfu_A          121 FCLSLMG-TNI--------RDFLEEANRVLKPGGLLKV  149 (215)
T ss_dssp             EESCCCS-SCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             Eehhccc-cCH--------HHHHHHHHHhCCCCeEEEE
Confidence            7665432 121        4999999999999999875

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.22  E-value=2.5e-11  Score=102.68  Aligned_cols=99  Identities=14%  Similarity=0.075  Sum_probs=61.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEE-EccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFL-FANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~-~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      +++.+|||||||+|.++..++++..  .+|+|+|+|++|++.++++.     +++... ..++.......++  ...+|.
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~d~  106 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSD-----ERVVVMEQFNFRNAVLADFE--QGRPSF  106 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTC-----TTEEEECSCCGGGCCGGGCC--SCCCSE
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhC-----ccccccccceEEEeCHhHcC--cCCCCE
Confidence            3467999999999999999999732  38999999999999876532     222221 1222210000011  111233


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.+...-...           ..+++++.++|||||.+++
T Consensus       107 ~~~D~v~~~l-----------~~~l~~i~rvLkpgG~lv~  135 (232)
T 3opn_A          107 TSIDVSFISL-----------DLILPPLYEILEKNGEVAA  135 (232)
T ss_dssp             EEECCSSSCG-----------GGTHHHHHHHSCTTCEEEE
T ss_pred             EEEEEEhhhH-----------HHHHHHHHHhccCCCEEEE
Confidence            3222211111           3899999999999999875

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.21  E-value=2.3e-11  Score=115.46  Aligned_cols=104  Identities=16%  Similarity=0.151  Sum_probs=75.6

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||||||.|.++..||++  + .+|+|||+|+.+++.|+.++.+.+..++++.++|+.+....   ..+++||+|+.
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~--g-a~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~v~~  140 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASK--G-ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA---LEEGEFDLAIG  140 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH---CCTTSCSEEEE
T ss_pred             CCeEEEECCCCcHHHHHHHhC--C-CEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh---ccCCCccEEEE
Confidence            478999999999999999998  4 67999999999999999999887766899999999864322   23688998876


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .-.-.|..+...      -..+..+.+.|+++|+.+
T Consensus       141 ~e~~ehv~~~~~------~~~~~~~~~tl~~~~~~~  170 (569)
T 4azs_A          141 LSVFHHIVHLHG------IDEVKRLLSRLADVTQAV  170 (569)
T ss_dssp             ESCHHHHHHHHC------HHHHHHHHHHHHHHSSEE
T ss_pred             CcchhcCCCHHH------HHHHHHHHHHhcccccee
Confidence            533222222110      122344566666666543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.17  E-value=2.4e-11  Score=104.41  Aligned_cols=102  Identities=15%  Similarity=0.120  Sum_probs=82.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...+|||||||+|-++..++...|. .+++|+|+++.|++.+++++..+|+. .++.+.|...      ..+++.+|+++
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~-a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~------~~p~~~~DvaL  203 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAE-TVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLE------DRLDEPADVTL  203 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTT-CEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTT------SCCCSCCSEEE
T ss_pred             CCceeeeeccCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecc------cCCCCCcchHH
Confidence            3579999999999999999998888 89999999999999999999998874 8899999864      33578899887


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++-.-|..++..   +   ...+ ++...|+|+|.++
T Consensus       204 ~lkti~~Le~q~---k---g~g~-~ll~aL~~~~vvV  233 (281)
T 3lcv_B          204 LLKTLPCLETQQ---R---GSGW-EVIDIVNSPNIVV  233 (281)
T ss_dssp             ETTCHHHHHHHS---T---THHH-HHHHHSSCSEEEE
T ss_pred             HHHHHHHhhhhh---h---HHHH-HHHHHhCCCCEEE
Confidence            765544443221   1   1455 8999999999875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.15  E-value=3e-10  Score=99.78  Aligned_cols=88  Identities=13%  Similarity=0.158  Sum_probs=69.3

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-C
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-Y  195 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~  195 (241)
                      .+.+...++.+|||+|||+|.++..+++++++ ++|+|+|+|+.|++.|+++++.++ .+++++++|+.+. +..... .
T Consensus        19 l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~-~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l-~~~l~~~g   95 (301)
T 1m6y_A           19 IEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREA-DFLLKTLG   95 (301)
T ss_dssp             HHHHCCCTTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGH-HHHHHHTT
T ss_pred             HHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHH-HHHHHhcC
Confidence            34444335789999999999999999999886 799999999999999999988777 6899999998763 221111 1


Q ss_pred             CCcEeEEEEeCC
Q 026219          196 PGPLMLVSILCP  207 (241)
Q Consensus       196 ~~~~d~V~~~~~  207 (241)
                      ...||.|++..+
T Consensus        96 ~~~~D~Vl~D~g  107 (301)
T 1m6y_A           96 IEKVDGILMDLG  107 (301)
T ss_dssp             CSCEEEEEEECS
T ss_pred             CCCCCEEEEcCc
Confidence            257999887654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.15  E-value=2.1e-10  Score=97.46  Aligned_cols=100  Identities=14%  Similarity=0.134  Sum_probs=76.3

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +...+|||||||+|.++..+.   +. ..++|+||++.+++.+++++..++ .+..+.++|...      ..+++.+|.|
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~-~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~------~~~~~~~Dvv  172 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GI-ASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLC------APPAEAGDLA  172 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TC-SEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTT------SCCCCBCSEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cC-CeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeeccc------CCCCCCcchH
Confidence            346799999999999999887   56 799999999999999999988877 578999999975      2256789988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++.-.-|+.+...   +   ...+ ++...|+++|.++
T Consensus       173 Lllk~lh~LE~q~---~---~~~~-~ll~aL~~~~vvV  203 (253)
T 3frh_A          173 LIFKLLPLLEREQ---A---GSAM-ALLQSLNTPRMAV  203 (253)
T ss_dssp             EEESCHHHHHHHS---T---THHH-HHHHHCBCSEEEE
T ss_pred             HHHHHHHHhhhhc---h---hhHH-HHHHHhcCCCEEE
Confidence            7764433332211   1   1333 7777899998775

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.14  E-value=9.1e-11  Score=104.69  Aligned_cols=95  Identities=17%  Similarity=0.203  Sum_probs=74.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..+|||||||+|.++..+++++|+ .+++++|+ +.+++.+++      .++++++.+|+.+.    +   + .+|+|++
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~---~-~~D~v~~  257 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPH-LKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFKS----I---P-SADAVLL  257 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTT-SEEEEEEC-HHHHSSCCC------CSSEEEEECCTTTC----C---C-CCSEEEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCC-CeEEEecc-HHHHhhccc------CCCcEEEeCccCCC----C---C-CceEEEE
Confidence            579999999999999999999998 89999999 788877643      35799999999641    1   2 3898887


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhcccc---CCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMP---GGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lkp---GG~l~~  241 (241)
                      .....+..+.      ....+++++.++|||   ||+++|
T Consensus       258 ~~vlh~~~d~------~~~~~l~~~~~~L~p~~~gG~l~i  291 (358)
T 1zg3_A          258 KWVLHDWNDE------QSLKILKNSKEAISHKGKDGKVII  291 (358)
T ss_dssp             ESCGGGSCHH------HHHHHHHHHHHHTGGGGGGCEEEE
T ss_pred             cccccCCCHH------HHHHHHHHHHHhCCCCCCCcEEEE
Confidence            6644322111      013899999999999   998875

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.13  E-value=8.9e-12  Score=108.21  Aligned_cols=98  Identities=15%  Similarity=0.109  Sum_probs=68.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC------CEEEE--EccccchHHhhccCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS------NIHFL--FANASVSFKQLVSSY  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~------ni~~~--~~D~~~~~~~~~~~~  195 (241)
                      ++.+|||||||+|.++..++++  .  +|+|||+++ |+..++++    ...      |+.++  ++|+.+     +  +
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~--~--~V~gVD~s~-m~~~a~~~----~~~~~~~~~~v~~~~~~~D~~~-----l--~  145 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ--P--NVREVKAYT-LGTSGHEK----PRLVETFGWNLITFKSKVDVTK-----M--E  145 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS--T--TEEEEEEEC-CCCTTSCC----CCCCCCTTGGGEEEECSCCGGG-----C--C
T ss_pred             CCCEEEEeccCCCHHHHHHHHc--C--CEEEEECch-hhhhhhhc----hhhhhhcCCCeEEEeccCcHhh-----C--C
Confidence            4679999999999999999987  3  599999999 54333221    112      78899  899975     3  2


Q ss_pred             CCcEeEEEEeCCC--CchhhhhhhcccchHHHHHHHHhccccCC--EEEc
Q 026219          196 PGPLMLVSILCPD--PHFKKKHHKRRVVQKPLVDSIIDYLMPGG--KVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~--~~~~~~~~~~r~~~~~ll~~l~r~LkpGG--~l~~  241 (241)
                      +++||.|+..+..  +.....+ .+   ...+++++.++|||||  .+++
T Consensus       146 ~~~fD~Vvsd~~~~~~~~~~d~-~~---~l~~L~~~~r~LkpGG~~~~v~  191 (276)
T 2wa2_A          146 PFQADTVLCDIGESNPTAAVEA-SR---TLTVLNVISRWLEYNQGCGFCV  191 (276)
T ss_dssp             CCCCSEEEECCCCCCSCHHHHH-HH---HHHHHHHHHHHHHHSTTCEEEE
T ss_pred             CCCcCEEEECCCcCCCchhhhH-HH---HHHHHHHHHHHhccCCCcEEEE
Confidence            5789999886541  1110000 00   0137899999999999  8764

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.11  E-value=4.6e-10  Score=98.32  Aligned_cols=81  Identities=21%  Similarity=0.169  Sum_probs=65.0

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      +.....++.+|||||||+|.++..++++  . .+|+|||+++++++.++++++  +..|++++++|+.+     .+..+.
T Consensus        44 ~~l~~~~~~~VLEIG~G~G~lT~~La~~--~-~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~-----~~~~~~  113 (295)
T 3gru_A           44 ESANLTKDDVVLEIGLGKGILTEELAKN--A-KKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALK-----VDLNKL  113 (295)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHH--S-SEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTT-----SCGGGS
T ss_pred             HhcCCCCcCEEEEECCCchHHHHHHHhc--C-CEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhh-----CCcccC
Confidence            3333345689999999999999999998  3 579999999999999999887  34689999999986     222345


Q ss_pred             cEeEEEEeCCC
Q 026219          198 PLMLVSILCPD  208 (241)
Q Consensus       198 ~~d~V~~~~~~  208 (241)
                      .+|.|+.+.|-
T Consensus       114 ~fD~Iv~NlPy  124 (295)
T 3gru_A          114 DFNKVVANLPY  124 (295)
T ss_dssp             CCSEEEEECCG
T ss_pred             CccEEEEeCcc
Confidence            68999888763

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.09  E-value=1.3e-10  Score=105.31  Aligned_cols=102  Identities=17%  Similarity=0.178  Sum_probs=75.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.++..++++. +. .+++|+|+++.+++.|         .+++++++|+.+.     . .++.||+|
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~-~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~-----~-~~~~fD~I  102 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTA-YRFVGVEIDPKALDLP---------PWAEGILADFLLW-----E-PGEAFDLI  102 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSC-SEEEEEESCTTTCCCC---------TTEEEEESCGGGC-----C-CSSCEEEE
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCC-CeEEEEECCHHHHHhC---------CCCcEEeCChhhc-----C-ccCCCCEE
Confidence            46799999999999999999876 45 7899999999998876         4789999999762     1 24689999


Q ss_pred             EEeCCCCchhh---------hhhh------------cccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKK---------KHHK------------RRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~---------~~~~------------~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.+.|--....         ...+            ....+..+++.+.++|+|||.+.+
T Consensus       103 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~  162 (421)
T 2ih2_A          103 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  162 (421)
T ss_dssp             EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence            88754311100         0000            011344889999999999998864

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.09  E-value=1.3e-11  Score=106.47  Aligned_cols=98  Identities=12%  Similarity=0.155  Sum_probs=67.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC------CEEEE--EccccchHHhhccCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS------NIHFL--FANASVSFKQLVSSY  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~------ni~~~--~~D~~~~~~~~~~~~  195 (241)
                      ++.+|||||||+|.++..++++  .  +|+|||+++ |+..+++    ....      ++.++  ++|+.+     +  +
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~--~--~V~gvD~s~-m~~~a~~----~~~~~~~~~~~v~~~~~~~D~~~-----l--~  137 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR--P--HVMDVRAYT-LGVGGHE----VPRITESYGWNIVKFKSRVDIHT-----L--P  137 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS--T--TEEEEEEEC-CCCSSCC----CCCCCCBTTGGGEEEECSCCTTT-----S--C
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc--C--cEEEEECch-hhhhhhh----hhhhhhccCCCeEEEecccCHhH-----C--C
Confidence            4679999999999999999987  3  599999999 5332221    1112      68899  899976     3  2


Q ss_pred             CCcEeEEEEeCCC--CchhhhhhhcccchHHHHHHHHhccccCC--EEEc
Q 026219          196 PGPLMLVSILCPD--PHFKKKHHKRRVVQKPLVDSIIDYLMPGG--KVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~--~~~~~~~~~~r~~~~~ll~~l~r~LkpGG--~l~~  241 (241)
                      +.+||.|+..+..  +.....+ .+   ...+++.+.++|||||  .|++
T Consensus       138 ~~~fD~V~sd~~~~~~~~~~d~-~~---~l~~L~~~~r~LkpGG~~~fv~  183 (265)
T 2oxt_A          138 VERTDVIMCDVGESSPKWSVES-ER---TIKILELLEKWKVKNPSADFVV  183 (265)
T ss_dssp             CCCCSEEEECCCCCCSCHHHHH-HH---HHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CCCCcEEEEeCcccCCccchhH-HH---HHHHHHHHHHHhccCCCeEEEE
Confidence            5789999876542  1110000 00   0137899999999999  8764

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.09  E-value=8.4e-12  Score=105.92  Aligned_cols=113  Identities=9%  Similarity=-0.016  Sum_probs=75.2

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC-
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY-  195 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~-  195 (241)
                      .+.....++.+|||||||+|.++..++++.   .+|+|+|+|+.+++.++++++  +..+++++++|+.+.     +.. 
T Consensus        22 ~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~-----~~~~   91 (245)
T 1yub_A           22 IKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQF-----QFPN   91 (245)
T ss_dssp             HHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTT-----TCCC
T ss_pred             HHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhc-----Cccc
Confidence            344443456799999999999999999984   579999999999999987664  335799999999862     222 


Q ss_pred             CCcEeEEEEeCCCCchhhh--h-hhcccchHHHH----HHHHhccccCCEEE
Q 026219          196 PGPLMLVSILCPDPHFKKK--H-HKRRVVQKPLV----DSIIDYLMPGGKVY  240 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~--~-~~~r~~~~~ll----~~l~r~LkpGG~l~  240 (241)
                      +++| .|+.+.|-......  + ..+......++    +.+.|+|+|||.+.
T Consensus        92 ~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~  142 (245)
T 1yub_A           92 KQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLG  142 (245)
T ss_dssp             SSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHH
T ss_pred             CCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchh
Confidence            2567 56666543110000  0 00000111233    66899999999764

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.07  E-value=8.1e-11  Score=101.17  Aligned_cols=80  Identities=24%  Similarity=0.206  Sum_probs=64.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCH-------HHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQ-------KLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~-------~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~  195 (241)
                      ++.+|||+|||+|..++.+++.  + ++|+|+|+|+       ++++.|+++++.+++.+ ++++++|+.+.++.+.   
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~--g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~---  156 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASL--G-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALV---  156 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHT--T-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHH---
T ss_pred             CcCeEEEeeCccCHHHHHHHHh--C-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhh---
Confidence            3579999999999999999996  4 5799999999       99999999988877754 9999999987544321   


Q ss_pred             C--CcEeEEEEeCCCC
Q 026219          196 P--GPLMLVSILCPDP  209 (241)
Q Consensus       196 ~--~~~d~V~~~~~~~  209 (241)
                      +  .+||.|+++.+-+
T Consensus       157 ~~~~~fD~V~~dP~~~  172 (258)
T 2r6z_A          157 KTQGKPDIVYLDPMYP  172 (258)
T ss_dssp             HHHCCCSEEEECCCC-
T ss_pred             ccCCCccEEEECCCCC
Confidence            2  5789888765433

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.07  E-value=3.1e-10  Score=104.46  Aligned_cols=112  Identities=13%  Similarity=0.088  Sum_probs=81.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHC-------------CCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccch
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRN-------------PDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVS  187 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~-------------p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~  187 (241)
                      ..+.+|||.|||+|.++..+++..             +. ..++|+|+++.+++.|+.++...++.  ++++.++|....
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~-~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~  248 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD-KALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK  248 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH-TTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcC-eEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC
Confidence            346799999999999999988753             23 46999999999999999999888875  688999998751


Q ss_pred             HHhhccCCCCcEeEEEEeCCCCchhhhh---hhc------ccchHHHHHHHHhccccCCEEEc
Q 026219          188 FKQLVSSYPGPLMLVSILCPDPHFKKKH---HKR------RVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       188 ~~~~~~~~~~~~d~V~~~~~~~~~~~~~---~~~------r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                           + ....||.|+.+.|-.......   .+.      ......+++.+.+.|||||++.|
T Consensus       249 -----~-~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          249 -----E-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             -----C-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----c-ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence                 1 234799998886532110000   000      00124889999999999998864

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.06  E-value=7e-11  Score=94.56  Aligned_cols=87  Identities=13%  Similarity=0.079  Sum_probs=65.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||.                 +++|+|+.|++.|+++..    .+++++++|+.+. +. .+..+++||.|+
T Consensus        12 ~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~----~~~~~~~~d~~~~-~~-~~~~~~~fD~V~   68 (176)
T 2ld4_A           12 AGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG----NEGRVSVENIKQL-LQ-SAHKESSFDIIL   68 (176)
T ss_dssp             TTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT----TTSEEEEEEGGGG-GG-GCCCSSCEEEEE
T ss_pred             CCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc----cCcEEEEechhcC-cc-ccCCCCCEeEEE
Confidence            478999999985                 139999999999988653    2589999999762 11 111468899998


Q ss_pred             EeCCCCch-hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHF-KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~-~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+...|. .+.        ..++++++|+|||||++++
T Consensus        69 ~~~~l~~~~~~~--------~~~l~~~~r~LkpgG~l~~   99 (176)
T 2ld4_A           69 SGLVPGSTTLHS--------AEILAEIARILRPGGCLFL   99 (176)
T ss_dssp             ECCSTTCCCCCC--------HHHHHHHHHHEEEEEEEEE
T ss_pred             ECChhhhcccCH--------HHHHHHHHHHCCCCEEEEE
Confidence            76554433 222        4999999999999999985

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.05  E-value=3.9e-11  Score=105.53  Aligned_cols=101  Identities=9%  Similarity=0.076  Sum_probs=67.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeC----CHHHHHHHHHHHHHhCCCCEEEEEc-cccchHHhhccCCCCc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEI----RQKLVKRAEFWVQELALSNIHFLFA-NASVSFKQLVSSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDi----s~~~v~~a~~~~~~~~l~ni~~~~~-D~~~~~~~~~~~~~~~  198 (241)
                      ++.+|||||||+|.++..++++  .  +|+|||+    ++.+++.+.  .+..+.+++.++.+ |+.+     .  ++..
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~--~--~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~-----l--~~~~  148 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGL--K--NVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFF-----I--PPER  148 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTS--T--TEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTT-----S--CCCC
T ss_pred             CCCEEEEEcCCCCHHHHHHHhc--C--CEEEEeccccCchhHHHHHH--hhhcCCCCeEEEecccccc-----C--CcCC
Confidence            3679999999999999999987  3  5999999    565443211  11112357999998 8865     2  2568


Q ss_pred             EeEEEEeCCCC--chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDP--HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~--~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||+|+...+..  +....+ .+.   ..+|+.+.++|||||.|++
T Consensus       149 fD~V~sd~~~~~g~~~~d~-~~~---l~~L~~~~~~LkpGG~~v~  189 (305)
T 2p41_A          149 CDTLLCDIGESSPNPTVEA-GRT---LRVLNLVENWLSNNTQFCV  189 (305)
T ss_dssp             CSEEEECCCCCCSSHHHHH-HHH---HHHHHHHHHHCCTTCEEEE
T ss_pred             CCEEEECCccccCcchhhH-HHH---HHHHHHHHHHhCCCCEEEE
Confidence            99998765421  110000 000   1578899999999998874

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.04  E-value=2.8e-10  Score=99.45  Aligned_cols=98  Identities=20%  Similarity=0.234  Sum_probs=67.6

Q ss_pred             CCCCcEEEEcCCc------cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEE-EEccccchHHhhccCC
Q 026219          123 PTLPLMVDIGSGS------GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHF-LFANASVSFKQLVSSY  195 (241)
Q Consensus       123 ~~~~~VLDIGCGt------G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~-~~~D~~~~~~~~~~~~  195 (241)
                      +++.+|||+|||+      |.  ..+++..+..+.|+|+|+|+.             ++++++ +++|+.+     .+ +
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~-----~~-~  120 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCAT-----VH-T  120 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGG-----CC-C
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECcccc-----CC-c
Confidence            3467999999944      76  555666662279999999998             146888 9999976     22 2


Q ss_pred             CCcEeEEEEeCCCCchh---hhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 PGPLMLVSILCPDPHFK---KKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~---~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++||+|+.+...++..   ..+.+...+.+.+++++.++|||||.|++
T Consensus       121 ~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~  169 (290)
T 2xyq_A          121 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV  169 (290)
T ss_dssp             SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEE
Confidence            47899998865432210   00111122345899999999999999975

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.04  E-value=5.9e-10  Score=101.28  Aligned_cols=108  Identities=19%  Similarity=0.079  Sum_probs=76.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCC-------------------------------------CcEEEEEeCCHHHHHHHH
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPD-------------------------------------SGNYLGLEIRQKLVKRAE  166 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~-------------------------------------~~~v~giDis~~~v~~a~  166 (241)
                      .+..|||.+||+|.+++.++....+                                     ...|+|+|+|+.|++.|+
T Consensus       201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar  280 (393)
T 3k0b_A          201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK  280 (393)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence            4678999999999999998875322                                     135999999999999999


Q ss_pred             HHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhcccc--CCEEEc
Q 026219          167 FWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMP--GGKVYF  241 (241)
Q Consensus       167 ~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lkp--GG~l~~  241 (241)
                      +|++.+|+. +++++++|+.+     .. .+..+|.|+.+.|--  . +..+ ..-...+.+.+.+.||+  ||.+++
T Consensus       281 ~Na~~~gl~~~I~~~~~D~~~-----~~-~~~~fD~Iv~NPPYg--~-rl~~-~~~l~~ly~~lg~~lk~~~g~~~~i  348 (393)
T 3k0b_A          281 QNAVEAGLGDLITFRQLQVAD-----FQ-TEDEYGVVVANPPYG--E-RLED-EEAVRQLYREMGIVYKRMPTWSVYV  348 (393)
T ss_dssp             HHHHHTTCTTCSEEEECCGGG-----CC-CCCCSCEEEECCCCC--C-SHHH-HHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred             HHHHHcCCCCceEEEECChHh-----CC-CCCCCCEEEECCCCc--c-ccCC-chhHHHHHHHHHHHHhcCCCCEEEE
Confidence            999999986 59999999986     22 245899998885521  0 0000 00112455555555555  887764

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.03  E-value=1.5e-09  Score=98.28  Aligned_cols=108  Identities=15%  Similarity=0.077  Sum_probs=77.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCC-------------------------------------CcEEEEEeCCHHHHHHHH
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPD-------------------------------------SGNYLGLEIRQKLVKRAE  166 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~-------------------------------------~~~v~giDis~~~v~~a~  166 (241)
                      .+..|||.+||+|.+++..+....+                                     ...|+|+|+++.|++.|+
T Consensus       194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar  273 (384)
T 3ldg_A          194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR  273 (384)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence            4678999999999999998865322                                     135999999999999999


Q ss_pred             HHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhcccc--CCEEEc
Q 026219          167 FWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMP--GGKVYF  241 (241)
Q Consensus       167 ~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lkp--GG~l~~  241 (241)
                      +|++..|+. +++++++|+.+     +. .+..+|.|+.+.|--  .. .. ...-...+.+.+.+.||+  ||.+++
T Consensus       274 ~Na~~~gl~~~I~~~~~D~~~-----l~-~~~~fD~Iv~NPPYG--~r-l~-~~~~l~~ly~~lg~~lk~~~g~~~~i  341 (384)
T 3ldg_A          274 KNAREVGLEDVVKLKQMRLQD-----FK-TNKINGVLISNPPYG--ER-LL-DDKAVDILYNEMGETFAPLKTWSQFI  341 (384)
T ss_dssp             HHHHHTTCTTTEEEEECCGGG-----CC-CCCCSCEEEECCCCT--TT-TS-CHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             HHHHHcCCCCceEEEECChHH-----CC-ccCCcCEEEECCchh--hc-cC-CHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence            999999986 49999999986     22 235789988885521  00 00 000113566666666665  887764

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.00  E-value=2.6e-09  Score=96.79  Aligned_cols=108  Identities=17%  Similarity=0.108  Sum_probs=77.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCC-------------------------------------CcEEEEEeCCHHHHHHHH
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPD-------------------------------------SGNYLGLEIRQKLVKRAE  166 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~-------------------------------------~~~v~giDis~~~v~~a~  166 (241)
                      .+..|||+|||+|.+++.++....+                                     ...|+|+|+++.+++.|+
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar  274 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR  274 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence            4678999999999999998876321                                     046999999999999999


Q ss_pred             HHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhcccc--CCEEEc
Q 026219          167 FWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMP--GGKVYF  241 (241)
Q Consensus       167 ~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lkp--GG~l~~  241 (241)
                      +|++.+++. ++++.++|+.+.     . .+..+|.|+.+.|--  . +.. .......+.+++.+.||+  ||.++|
T Consensus       275 ~Na~~~gl~~~i~~~~~D~~~l-----~-~~~~~D~Iv~NPPyg--~-rl~-~~~~l~~ly~~lg~~lk~~~g~~~~i  342 (385)
T 3ldu_A          275 ENAEIAGVDEYIEFNVGDATQF-----K-SEDEFGFIITNPPYG--E-RLE-DKDSVKQLYKELGYAFRKLKNWSYYL  342 (385)
T ss_dssp             HHHHHHTCGGGEEEEECCGGGC-----C-CSCBSCEEEECCCCC--C-SHH-HHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred             HHHHHcCCCCceEEEECChhhc-----C-cCCCCcEEEECCCCc--C-ccC-CHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence            999999985 799999999862     2 246789988876531  0 000 000113566666666665  777664

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.98  E-value=3.5e-09  Score=89.90  Aligned_cols=58  Identities=28%  Similarity=0.343  Sum_probs=51.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      ++.+|||||||+|.++..++++.   .+|+|+|+|+.+++.++++.+.  .++++++++|+.+
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~   87 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQ   87 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGG
T ss_pred             CCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHh
Confidence            46789999999999999999984   4799999999999999987753  3689999999986

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.97  E-value=7.6e-10  Score=100.97  Aligned_cols=76  Identities=13%  Similarity=0.035  Sum_probs=64.5

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh--CCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL--ALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~--~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +.+|||+|||+|..++.+++.  . .+|+|||+|+.+++.|++|++.+  |+.+++++++|+.+.++..   .+..||.|
T Consensus        94 g~~VLDLgcG~G~~al~LA~~--g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~---~~~~fDvV  167 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK--A-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLI---KTFHPDYI  167 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT--C-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHH---HHHCCSEE
T ss_pred             CCEEEEeCCCchHHHHHHHhc--C-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhc---cCCCceEE
Confidence            689999999999999999987  3 57999999999999999999988  8888999999998754432   13568888


Q ss_pred             EEeC
Q 026219          203 SILC  206 (241)
Q Consensus       203 ~~~~  206 (241)
                      ++..
T Consensus       168 ~lDP  171 (410)
T 3ll7_A          168 YVDP  171 (410)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            8754

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.97  E-value=1.6e-09  Score=92.88  Aligned_cols=82  Identities=23%  Similarity=0.227  Sum_probs=62.3

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch-HHhhccCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS-FKQLVSSYP  196 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~-~~~~~~~~~  196 (241)
                      +.....++.+|||||||+|.++..++++.   .+|+|+|++++|++.++++++.  ..+++++++|+.+. ++...  .+
T Consensus        23 ~~~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~~--~~   95 (255)
T 3tqs_A           23 SAIHPQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSVK--TD   95 (255)
T ss_dssp             HHHCCCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGSC--CS
T ss_pred             HhcCCCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHhc--cC
Confidence            33443457899999999999999999873   5799999999999999998754  46899999999873 12111  13


Q ss_pred             CcEeEEEEeCC
Q 026219          197 GPLMLVSILCP  207 (241)
Q Consensus       197 ~~~d~V~~~~~  207 (241)
                      ..+| |+.+.|
T Consensus        96 ~~~~-vv~NlP  105 (255)
T 3tqs_A           96 KPLR-VVGNLP  105 (255)
T ss_dssp             SCEE-EEEECC
T ss_pred             CCeE-EEecCC
Confidence            4677 666654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.95  E-value=6.7e-09  Score=86.07  Aligned_cols=100  Identities=9%  Similarity=0.083  Sum_probs=75.3

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC---CCEEEEEccccch--------------
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL---SNIHFLFANASVS--------------  187 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l---~ni~~~~~D~~~~--------------  187 (241)
                      ..+||||||  |..++.+++. ++ ++|+.||.+++..+.|++++++.|+   .+++++.+|+.+.              
T Consensus        31 a~~VLEiGt--GySTl~lA~~-~~-g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~  106 (202)
T 3cvo_A           31 AEVILEYGS--GGSTVVAAEL-PG-KHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS  106 (202)
T ss_dssp             CSEEEEESC--SHHHHHHHTS-TT-CEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred             CCEEEEECc--hHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence            578999998  4688888874 45 7999999999999999999999885   4799999997653              


Q ss_pred             HHhh----ccC-CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          188 FKQL----VSS-YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       188 ~~~~----~~~-~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..    ... ..+.||+|++.-...             ...+..+.++|+|||.|++
T Consensus       107 l~~~~~~i~~~~~~~~fDlIfIDg~k~-------------~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          107 YPDYPLAVWRTEGFRHPDVVLVDGRFR-------------VGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             TTHHHHGGGGCTTCCCCSEEEECSSSH-------------HHHHHHHHHHCSSCEEEEE
T ss_pred             HHHHhhhhhccccCCCCCEEEEeCCCc-------------hhHHHHHHHhcCCCeEEEE
Confidence            2211    111 136799988774211             2566667799999999875

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.92  E-value=2.2e-09  Score=92.25  Aligned_cols=112  Identities=16%  Similarity=0.175  Sum_probs=75.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHH-------CCC----CcEEEEEeCCH---HHHH-----------HHHHHHHH-------
Q 026219          124 TLPLMVDIGSGSGRFLIWLARR-------NPD----SGNYLGLEIRQ---KLVK-----------RAEFWVQE-------  171 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~-------~p~----~~~v~giDis~---~~v~-----------~a~~~~~~-------  171 (241)
                      +..+|||||+|+|..++.+++.       .|+    ..+++++|..|   +.++           .|++.++.       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            3579999999999999887664       553    15899999876   4433           56665543       


Q ss_pred             -------hCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          172 -------LALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       172 -------~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                             .+..+++++.+|+.+.++...+.....||.|++.-   +.+++  ..++.+..+++.++++|+|||+|.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~---fsp~~--~p~lw~~~~l~~l~~~L~pGG~l~  210 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG---FAPAK--NPDMWTQNLFNAMARLARPGGTLA  210 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS---SCTTT--CGGGCCHHHHHHHHHHEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC---CCccc--ChhhcCHHHHHHHHHHcCCCcEEE
Confidence                   12236889999998865543111113799887742   21111  124456799999999999999986

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.91  E-value=7.5e-09  Score=90.41  Aligned_cols=112  Identities=14%  Similarity=0.184  Sum_probs=89.8

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-----CCCCEEEEEccccchHHhhccC
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-----ALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-----~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      ...++..+||=||-|.|..+..+.+..+. .+|+.|||++.+++.+++.+...     .-++++++.+|+.+++    ..
T Consensus        79 ~~~p~pk~VLIiGgGdG~~~revlk~~~v-~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l----~~  153 (294)
T 3o4f_A           79 LAHGHAKHVLIIGGGDGAMLREVTRHKNV-ESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV----NQ  153 (294)
T ss_dssp             HHSSCCCEEEEESCTTSHHHHHHHTCTTC-CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTT----SC
T ss_pred             hhCCCCCeEEEECCCchHHHHHHHHcCCc-ceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHH----hh
Confidence            33455689999999999999999987665 68999999999999999976431     2257999999998753    33


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .+..+|+|++..++|....    ..+....+++.+.+.|+|||.+.
T Consensus       154 ~~~~yDvIi~D~~dp~~~~----~~L~t~eFy~~~~~~L~p~Gv~v  195 (294)
T 3o4f_A          154 TSQTFDVIISDCTDPIGPG----ESLFTSAFYEGCKRCLNPGGIFV  195 (294)
T ss_dssp             SSCCEEEEEESCCCCCCTT----CCSSCCHHHHHHHHTEEEEEEEE
T ss_pred             ccccCCEEEEeCCCcCCCc----hhhcCHHHHHHHHHHhCCCCEEE
Confidence            4678999999888764322    23566799999999999999986

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.90  E-value=2.9e-09  Score=92.12  Aligned_cols=79  Identities=16%  Similarity=0.103  Sum_probs=60.5

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC-
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-  196 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~-  196 (241)
                      +.....++ +|||||||+|.++..++++.   .+|+|+|++++|++.+++++.  + .|++++++|+.+.     +..+ 
T Consensus        41 ~~~~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~--~-~~v~vi~~D~l~~-----~~~~~  108 (271)
T 3fut_A           41 EAARPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLS--G-LPVRLVFQDALLY-----PWEEV  108 (271)
T ss_dssp             HHHCCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTT--T-SSEEEEESCGGGS-----CGGGS
T ss_pred             HhcCCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcC--C-CCEEEEECChhhC-----Chhhc
Confidence            33333446 99999999999999999984   469999999999999998764  2 5899999999862     1111 


Q ss_pred             CcEeEEEEeCCC
Q 026219          197 GPLMLVSILCPD  208 (241)
Q Consensus       197 ~~~d~V~~~~~~  208 (241)
                      ..+|.|+.+.|-
T Consensus       109 ~~~~~iv~NlPy  120 (271)
T 3fut_A          109 PQGSLLVANLPY  120 (271)
T ss_dssp             CTTEEEEEEECS
T ss_pred             cCccEEEecCcc
Confidence            246777777654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.88  E-value=2.3e-09  Score=92.10  Aligned_cols=77  Identities=18%  Similarity=0.105  Sum_probs=60.2

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-------C-C-CCEEEEEccccchHHhhccCCC
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-------A-L-SNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-------~-l-~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      .+|||+|||+|..++.++.+  + ++|++||+++.+++.++++++..       + + .+++++++|+.+.++.    .+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~--g-~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~----~~  162 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV--G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD----IT  162 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--T-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT----CS
T ss_pred             CEEEEcCCcCCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh----Cc
Confidence            79999999999999999998  4 57999999999888887776532       2 3 4699999999874332    23


Q ss_pred             CcEeEEEEeCCCC
Q 026219          197 GPLMLVSILCPDP  209 (241)
Q Consensus       197 ~~~d~V~~~~~~~  209 (241)
                      ..||.|++..+-+
T Consensus       163 ~~fDvV~lDP~y~  175 (258)
T 2oyr_A          163 PRPQVVYLDPMFP  175 (258)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             ccCCEEEEcCCCC
Confidence            4699998875443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.86  E-value=9.3e-09  Score=89.27  Aligned_cols=66  Identities=18%  Similarity=0.155  Sum_probs=53.3

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS  187 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~-~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~  187 (241)
                      +.....++.+|||||||+|.++..++++.+. .++|+|+|+|+.|++.++++.    ..+++++++|+.+.
T Consensus        36 ~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           36 AAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTF  102 (279)
T ss_dssp             HHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGC
T ss_pred             HhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcC
Confidence            3343345789999999999999999998532 134999999999999999883    35899999999863

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.85  E-value=1.5e-08  Score=98.28  Aligned_cols=110  Identities=17%  Similarity=0.151  Sum_probs=75.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC------------------------------------------CCCcEEEEEeCCHHH
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN------------------------------------------PDSGNYLGLEIRQKL  161 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~------------------------------------------p~~~~v~giDis~~~  161 (241)
                      .+..|||.+||+|.+++..+...                                          +. ..++|+|+++.+
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~-~~i~G~Did~~a  268 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS-SHFYGSDSDARV  268 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEESCHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC-ccEEEEECCHHH
Confidence            46789999999999999887642                                          22 479999999999


Q ss_pred             HHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHH---HHHHhccccCC
Q 026219          162 VKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLV---DSIIDYLMPGG  237 (241)
Q Consensus       162 v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll---~~l~r~LkpGG  237 (241)
                      ++.|++|++..|+.+ +++.++|+.+..   .+..++.+|.|+.+.|--  . +... ......+.   .+..+.+.|||
T Consensus       269 v~~A~~N~~~agv~~~i~~~~~D~~~~~---~~~~~~~~d~Iv~NPPYG--~-Rlg~-~~~l~~ly~~l~~~lk~~~~g~  341 (703)
T 3v97_A          269 IQRARTNARLAGIGELITFEVKDVAQLT---NPLPKGPYGTVLSNPPYG--E-RLDS-EPALIALHSLLGRIMKNQFGGW  341 (703)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEECCGGGCC---CSCTTCCCCEEEECCCCC--C----C-CHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCCCceEEEECChhhCc---cccccCCCCEEEeCCCcc--c-cccc-hhHHHHHHHHHHHHHHhhCCCC
Confidence            999999999999865 999999998621   111123789998885521  0 0000 00112333   34444456899


Q ss_pred             EEEc
Q 026219          238 KVYF  241 (241)
Q Consensus       238 ~l~~  241 (241)
                      .+++
T Consensus       342 ~~~i  345 (703)
T 3v97_A          342 NLSL  345 (703)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            8875

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.82  E-value=1.9e-08  Score=90.32  Aligned_cols=114  Identities=15%  Similarity=0.120  Sum_probs=86.3

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC------CCEEEEEccccchHHhhccCC
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL------SNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l------~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      ..++.+|||+++|.|.-+..+++.... ..|+++|+++..++..++++++.+.      .++.+...|+... ...   .
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~-~~~---~  220 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKW-GEL---E  220 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGH-HHH---S
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhc-chh---c
Confidence            335789999999999999999998776 7899999999999999999998765      3688999999763 222   3


Q ss_pred             CCcEeEEEEeCCCCc---------hh--hh--hhhc---ccchHHHHHHHHhccccCCEEE
Q 026219          196 PGPLMLVSILCPDPH---------FK--KK--HHKR---RVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~---------~~--~~--~~~~---r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .+.||.|.+.-|-..         +.  .+  ....   ..++.++|+...++|||||+|+
T Consensus       221 ~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LV  281 (359)
T 4fzv_A          221 GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVV  281 (359)
T ss_dssp             TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            578999988655211         00  00  0000   1256799999999999999886

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.82  E-value=1.7e-08  Score=86.06  Aligned_cols=63  Identities=17%  Similarity=0.245  Sum_probs=52.2

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      +.....++.+|||||||+|.++..++++ +. .+|+|+|+++.+++.++++    +..|++++++|+.+
T Consensus        25 ~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~-~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~   87 (249)
T 3ftd_A           25 EELNIEEGNTVVEVGGGTGNLTKVLLQH-PL-KKLYVIELDREMVENLKSI----GDERLEVINEDASK   87 (249)
T ss_dssp             HHTTCCTTCEEEEEESCHHHHHHHHTTS-CC-SEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTT
T ss_pred             HhcCCCCcCEEEEEcCchHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhh
Confidence            3333335689999999999999999987 33 5899999999999999876    23589999999986

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.82  E-value=1.3e-08  Score=96.14  Aligned_cols=118  Identities=19%  Similarity=0.124  Sum_probs=82.5

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCC-----------------CcEEEEEeCCHHHHHHHHHHHHHhCCCC-----E
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPD-----------------SGNYLGLEIRQKLVKRAEFWVQELALSN-----I  177 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~-----------------~~~v~giDis~~~v~~a~~~~~~~~l~n-----i  177 (241)
                      .....+.+|+|.|||+|.+++.+++....                 ...++|+|+++.+++.|+.++...+..+     +
T Consensus       165 l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~  244 (541)
T 2ar0_A          165 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG  244 (541)
T ss_dssp             HCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTB
T ss_pred             hccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccC
Confidence            33334679999999999999998875311                 0369999999999999999988777765     7


Q ss_pred             EEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhh------cccchHHHHHHHHhccccCCEEEc
Q 026219          178 HFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHK------RRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       178 ~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~------~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.++|......  .  ....||.|+.+.|-........+      .......+++.+.+.|||||++.|
T Consensus       245 ~I~~gDtL~~~~--~--~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~  310 (541)
T 2ar0_A          245 AIRLGNTLGSDG--E--NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV  310 (541)
T ss_dssp             SEEESCTTSHHH--H--TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CeEeCCCccccc--c--cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence            899999875211  1  24679999888653111000000      001123799999999999998764

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.70  E-value=1.5e-08  Score=95.65  Aligned_cols=114  Identities=17%  Similarity=0.069  Sum_probs=78.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCC---------------CCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNP---------------DSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASV  186 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p---------------~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~  186 (241)
                      +...+|+|.+||+|.+++.+++...               . ..++|+|+++.++..|+.++...|+. ++.+.++|...
T Consensus       243 p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~-~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~  321 (544)
T 3khk_A          243 PYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQ-ISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFL  321 (544)
T ss_dssp             CCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGG-EEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTT
T ss_pred             cCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhh-ceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhc
Confidence            3345999999999999998765431               3 57999999999999999999888874 44447788764


Q ss_pred             hHHhhccCCCCcEeEEEEeCCCC---chhhhh-hhcc-----------------cchHHHHHHHHhccccCCEEEc
Q 026219          187 SFKQLVSSYPGPLMLVSILCPDP---HFKKKH-HKRR-----------------VVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       187 ~~~~~~~~~~~~~d~V~~~~~~~---~~~~~~-~~~r-----------------~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .    ....+..||.|+.+.|-.   |..... ...|                 ...-.+++.+.+.|+|||++.|
T Consensus       322 ~----~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai  393 (544)
T 3khk_A          322 D----DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMAL  393 (544)
T ss_dssp             S----CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred             C----cccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence            1    111346899999886532   211100 0001                 0112699999999999998754

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.69  E-value=8.3e-08  Score=91.81  Aligned_cols=103  Identities=10%  Similarity=0.054  Sum_probs=72.6

Q ss_pred             CCcEEEEcCCccHH---HHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEe
Q 026219          125 LPLMVDIGSGSGRF---LIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       125 ~~~VLDIGCGtG~~---~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ..+|||||||+|.+   ++..+++.....+|+|||.|+ +...|++..+++++. .|+++++|+++     +. .|..+|
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~ee-----v~-LPEKVD  430 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMRE-----WV-APEKAD  430 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTT-----CC-CSSCEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCccee-----cc-CCcccC
Confidence            35799999999988   444444432214799999998 567788888888885 59999999987     22 357899


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +|+.-.-....   -.+..   ...+....|+|||||.++
T Consensus       431 IIVSEwMG~fL---l~E~m---levL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          431 IIVSELLGSFA---DNELS---PECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EEECCCCBTTB---GGGCH---HHHHHHHGGGEEEEEEEE
T ss_pred             EEEEEcCcccc---cccCC---HHHHHHHHHhcCCCcEEc
Confidence            88643211100   01111   267788899999999875

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.69  E-value=5.8e-08  Score=84.40  Aligned_cols=103  Identities=14%  Similarity=0.035  Sum_probs=80.1

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC-----CCCcEEEEEeCCHH--------------------------HHHHHHHHHHHhC
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN-----PDSGNYLGLEIRQK--------------------------LVKRAEFWVQELA  173 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~-----p~~~~v~giDis~~--------------------------~v~~a~~~~~~~~  173 (241)
                      ...|||+|+..|..++.+++..     ++ .+|+++|..+.                          .++.+++++++.|
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~-~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRD-RTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCS-CCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCC-CEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            5789999999999999987653     35 78999997421                          4678899999998


Q ss_pred             C--CCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          174 L--SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       174 l--~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +  ++++++.+|+.+.++..   .++.+|.|.+.. +..  ..       +...++.+.+.|+|||.|++
T Consensus       186 l~~~~I~li~Gda~etL~~~---~~~~~d~vfIDa-D~y--~~-------~~~~Le~~~p~L~pGGiIv~  242 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLPTA---PIDTLAVLRMDG-DLY--ES-------TWDTLTNLYPKVSVGGYVIV  242 (282)
T ss_dssp             CCSTTEEEEESCHHHHSTTC---CCCCEEEEEECC-CSH--HH-------HHHHHHHHGGGEEEEEEEEE
T ss_pred             CCcCceEEEEeCHHHHHhhC---CCCCEEEEEEcC-Ccc--cc-------HHHHHHHHHhhcCCCEEEEE
Confidence            7  68999999998865542   357899888764 321  11       13789999999999999875

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.63  E-value=2.6e-08  Score=85.21  Aligned_cols=82  Identities=17%  Similarity=0.112  Sum_probs=57.2

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch-HHhhccCCCCc
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS-FKQLVSSYPGP  198 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~-~~~~~~~~~~~  198 (241)
                      ....++.+|||||||+|.++. +++ .+. .+|+|+|+++.|++.++++.+.  .+|++++++|+.+. ++...+. +..
T Consensus        17 ~~~~~~~~VLEIG~G~G~lt~-l~~-~~~-~~v~avEid~~~~~~a~~~~~~--~~~v~~i~~D~~~~~~~~~~~~-~~~   90 (252)
T 1qyr_A           17 INPQKGQAMVEIGPGLAALTE-PVG-ERL-DQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFNFGELAEK-MGQ   90 (252)
T ss_dssp             HCCCTTCCEEEECCTTTTTHH-HHH-TTC-SCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCCHHHHHHH-HTS
T ss_pred             cCCCCcCEEEEECCCCcHHHH-hhh-CCC-CeEEEEECCHHHHHHHHHHhcc--CCceEEEECchhhCCHHHhhcc-cCC
Confidence            333346789999999999999 654 332 3499999999999999886643  25899999999863 2222110 122


Q ss_pred             EeEEEEeCC
Q 026219          199 LMLVSILCP  207 (241)
Q Consensus       199 ~d~V~~~~~  207 (241)
                      .+.|+.+.|
T Consensus        91 ~~~vvsNlP   99 (252)
T 1qyr_A           91 PLRVFGNLP   99 (252)
T ss_dssp             CEEEEEECC
T ss_pred             ceEEEECCC
Confidence            356777765

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.61  E-value=6.4e-08  Score=94.38  Aligned_cols=114  Identities=10%  Similarity=0.029  Sum_probs=75.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCC--CcEEEEEeCCHHHHHHH--HHHHHHh----CCCCEEEEEccccchHHhhccCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPD--SGNYLGLEIRQKLVKRA--EFWVQEL----ALSNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~--~~~v~giDis~~~v~~a--~~~~~~~----~l~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      .+.+|||.|||+|.++..+++..+.  ...++|+|+++.+++.|  +.++..+    +..+..+...|+... +   ...
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~-~---~~~  396 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL-N---PED  396 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGC-C---GGG
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcc-c---ccc
Confidence            4679999999999999999987751  15799999999999999  5444332    233345555555431 0   112


Q ss_pred             CCcEeEEEEeCCCC--ch--hhhh-h----------------hcccchHHHHHHHHhccccCCEEEc
Q 026219          196 PGPLMLVSILCPDP--HF--KKKH-H----------------KRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~~--~~--~~~~-~----------------~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ...||.|+.+.|--  +.  .... .                ........+++.+.+.|+|||++.|
T Consensus       397 ~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf  463 (878)
T 3s1s_A          397 FANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISA  463 (878)
T ss_dssp             GTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE
T ss_pred             cCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEE
Confidence            46799999886531  10  0000 0                0012356799999999999999864

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.60  E-value=2.2e-07  Score=87.63  Aligned_cols=116  Identities=16%  Similarity=0.065  Sum_probs=83.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCC--CCcEEEEEeCCHHHHHHHHHHHHHhCC--CCEEEEEccccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNP--DSGNYLGLEIRQKLVKRAEFWVQELAL--SNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p--~~~~v~giDis~~~v~~a~~~~~~~~l--~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      .+.+|+|.+||+|.+++.+++...  ....++|+|+++.++..|+.++...|+  .++.+.++|....  .+....+..|
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~--d~p~~~~~~f  298 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDE--DWPTQEPTNF  298 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTS--CSCCSSCCCB
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecc--cccccccccc
Confidence            467999999999999999988752  126899999999999999999988887  4789999998751  0001235679


Q ss_pred             eEEEEeCCC--Cchhhh--hhhccc-----------chHHHHHHHHhccc-cCCEEEc
Q 026219          200 MLVSILCPD--PHFKKK--HHKRRV-----------VQKPLVDSIIDYLM-PGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~--~~~~~~--~~~~r~-----------~~~~ll~~l~r~Lk-pGG~l~~  241 (241)
                      |.|+.+.|-  .|....  ....|.           ..-.+++.+.+.|+ |||++.|
T Consensus       299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~  356 (542)
T 3lkd_A          299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI  356 (542)
T ss_dssp             SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred             cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence            999988653  121100  001110           12368999999999 9998754

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.59  E-value=7.7e-08  Score=92.51  Aligned_cols=108  Identities=8%  Similarity=-0.009  Sum_probs=71.2

Q ss_pred             CCcEEEEcCCccHHHHH---HHH-HC---------CCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHh
Q 026219          125 LPLMVDIGSGSGRFLIW---LAR-RN---------PDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQ  190 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~---la~-~~---------p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~  190 (241)
                      ..+|||||||+|.+...   .++ ..         .. .+|+|||.|+.++...+.+.. +++. .|+++.+|+.+.-..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~-~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp  487 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLK-VKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGI  487 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCE-EEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccc-cEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcccc
Confidence            35899999999999643   222 11         22 489999999988776665554 6775 499999999874210


Q ss_pred             hccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          191 LVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       191 ~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .-...++.+|+|+.-.-.....      .......|..+.+.|||||.++
T Consensus       488 ~~~~~~ekVDIIVSElmGsfl~------nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          488 AKDRGFEQPDIIVSELLGSFGD------NELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHTTCCCCSEEEECCCBTTBG------GGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cccCCCCcccEEEEeccccccc------hhccHHHHHHHHHhCCCCcEEE
Confidence            0011257899887543221100      0123478888899999999875

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.48  E-value=8.6e-07  Score=76.74  Aligned_cols=85  Identities=14%  Similarity=0.060  Sum_probs=64.1

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      +..+.+...++.++||.+||.|..+..++++  + ++|+|+|.++.+++.|++ ++.   ++++++++|..+....+...
T Consensus        13 e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~-g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~   85 (285)
T 1wg8_A           13 EALDLLAVRPGGVYVDATLGGAGHARGILER--G-GRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAAL   85 (285)
T ss_dssp             HHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--T-CEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHT
T ss_pred             HHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--C-CEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHc
Confidence            3444444334789999999999999999998  5 799999999999999988 533   58999999998642222221


Q ss_pred             CCCcEeEEEEeC
Q 026219          195 YPGPLMLVSILC  206 (241)
Q Consensus       195 ~~~~~d~V~~~~  206 (241)
                      ....+|.|++..
T Consensus        86 g~~~vDgIL~DL   97 (285)
T 1wg8_A           86 GVERVDGILADL   97 (285)
T ss_dssp             TCSCEEEEEEEC
T ss_pred             CCCCcCEEEeCC
Confidence            235799988754

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.40  E-value=6e-07  Score=80.84  Aligned_cols=114  Identities=13%  Similarity=0.110  Sum_probs=82.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-----C---CCCEEEEEccccchHHhhccCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-----A---LSNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-----~---l~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      +.++||=||-|.|..+..+.+. +. .+|+.|||++.+++.|++.+...     .   .++++++.+|+.+++..... .
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~-~  281 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-KP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK-E  281 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-CC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH-H
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-CC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh-c
Confidence            3578999999999999999885 44 58999999999999999864211     1   13589999999876654321 1


Q ss_pred             CCcEeEEEEeCCCCchhh-h-hhhcccchHHHHHHHHhccccCCEEE
Q 026219          196 PGPLMLVSILCPDPHFKK-K-HHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~-~-~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ...||+|++...++.... + .--...+.+.+++.+.+.|+|||.++
T Consensus       282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv  328 (381)
T 3c6k_A          282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYF  328 (381)
T ss_dssp             TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEE
Confidence            467999998865532110 0 00112455789999999999999986

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.19  E-value=2.1e-06  Score=73.99  Aligned_cols=107  Identities=14%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .+.+|||||||+|.++..++++.+. ..++|+|++.++....... +..+. ++..+..|+..     ....+..+|+|+
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa~~~~~-~~v~g~dVGvDl~~~pi~~-~~~g~-~ii~~~~~~dv-----~~l~~~~~DlVl  145 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAAAQKEV-SGVKGFTLGRDGHEKPMNV-QSLGW-NIITFKDKTDI-----HRLEPVKCDTLL  145 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTE-EEEEEECCCCTTCCCCCCC-CBTTG-GGEEEECSCCT-----TTSCCCCCSEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCC-CcceeEEEeccCccccccc-CcCCC-CeEEEecccee-----hhcCCCCccEEE
Confidence            3578999999999999998887655 5788999985541110000 00011 44555665522     222457899888


Q ss_pred             EeCCCCchh-hhhhhcccchHHHHHHHHhccccC-CEEEc
Q 026219          204 ILCPDPHFK-KKHHKRRVVQKPLVDSIIDYLMPG-GKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~-~~~~~~r~~~~~ll~~l~r~LkpG-G~l~~  241 (241)
                      ......... ...+.+   +-.+++.+.++|+|| |.|++
T Consensus       146 sD~apnsG~~~~D~~r---s~~LL~~a~~~LkpG~G~FV~  182 (277)
T 3evf_A          146 CDIGESSSSSVTEGER---TVRVLDTVEKWLACGVDNFCV  182 (277)
T ss_dssp             ECCCCCCSCHHHHHHH---HHHHHHHHHHHHTTCCSEEEE
T ss_pred             ecCccCcCchHHHHHH---HHHHHHHHHHHhCCCCCeEEE
Confidence            765321000 000001   114588999999999 99875

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.14  E-value=4.9e-06  Score=72.33  Aligned_cols=63  Identities=19%  Similarity=0.151  Sum_probs=47.4

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccc
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA  184 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~  184 (241)
                      ..+. .++.+|||++||+|.+++.+++..   .+++|+|+++++++.|+++++......--.+.+|+
T Consensus       230 ~~~~-~~~~~vlD~f~GsGt~~~~a~~~g---~~~~g~e~~~~~~~~a~~r~~~~~~~~~~~~~~~~  292 (297)
T 2zig_A          230 RMFS-FVGDVVLDPFAGTGTTLIAAARWG---RRALGVELVPRYAQLAKERFAREVPGFSLEVLDGA  292 (297)
T ss_dssp             HHHC-CTTCEEEETTCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHSTTCCEEEECC-
T ss_pred             HHhC-CCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHHhccccchhhCCcc
Confidence            3344 357899999999999999988863   47999999999999999999875322222334444

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.12  E-value=9.1e-06  Score=73.41  Aligned_cols=111  Identities=12%  Similarity=0.078  Sum_probs=71.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHH-----------------CCCCcEEEEEeCC-----------HHHHHHHHHHHHHhCC-C
Q 026219          125 LPLMVDIGSGSGRFLIWLARR-----------------NPDSGNYLGLEIR-----------QKLVKRAEFWVQELAL-S  175 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~-----------------~p~~~~v~giDis-----------~~~v~~a~~~~~~~~l-~  175 (241)
                      .-+|+|+|||+|..++.+...                 .|+ ..|+.-|+.           +.+.+.+++   ..+. .
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe-~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~  128 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPT-IQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKI  128 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CE-EEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCc-eEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCC
Confidence            578999999999999987765                 355 789999987           444443322   2232 2


Q ss_pred             CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhh-----------ccc---------ch-----------HH
Q 026219          176 NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHK-----------RRV---------VQ-----------KP  224 (241)
Q Consensus       176 ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~-----------~r~---------~~-----------~~  224 (241)
                      +-.|+.+....+...++  ++.++|.|+.++..+|..+....           .++         +.           ..
T Consensus       129 ~~~f~~gvpgSFy~rlf--p~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~  206 (384)
T 2efj_A          129 GSCLIGAMPGSFYSRLF--PEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT  206 (384)
T ss_dssp             TSEEEEECCSCTTSCCS--CTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEecchhhhhccC--CCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence            34666676654433333  57999999988877775433200           000         11           23


Q ss_pred             HHHHHHhccccCCEEEc
Q 026219          225 LVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       225 ll~~l~r~LkpGG~l~~  241 (241)
                      +|+..++.|+|||++++
T Consensus       207 FL~~Ra~eL~pGG~mvl  223 (384)
T 2efj_A          207 FLRIHSEELISRGRMLL  223 (384)
T ss_dssp             HHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHhccCCeEEE
Confidence            47777999999999875

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.11  E-value=6.2e-06  Score=64.64  Aligned_cols=64  Identities=9%  Similarity=0.115  Sum_probs=47.2

Q ss_pred             CCcEEEEcCCcc-HHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSG-RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG-~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ..+|||||||+| ..+..|+++. + ..|+++|+++..++               +++.|+.+....+.    ..+|+|.
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~~-g-~~V~atDInp~Av~---------------~v~dDiF~P~~~~Y----~~~DLIY   94 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKHS-K-VDLVLTDIKPSHGG---------------IVRDDITSPRMEIY----RGAALIY   94 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHHS-C-CEEEEECSSCSSTT---------------EECCCSSSCCHHHH----TTEEEEE
T ss_pred             CCcEEEEccCCChHHHHHHHHhC-C-CeEEEEECCccccc---------------eEEccCCCCccccc----CCcCEEE
Confidence            479999999999 6999999842 4 67999999997655               88889876322111    3689885


Q ss_pred             EeCCCC
Q 026219          204 ILCPDP  209 (241)
Q Consensus       204 ~~~~~~  209 (241)
                      ..-|.+
T Consensus        95 sirPP~  100 (153)
T 2k4m_A           95 SIRPPA  100 (153)
T ss_dssp             EESCCT
T ss_pred             EcCCCH
Confidence            554444

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.09  E-value=1.5e-05  Score=71.60  Aligned_cols=71  Identities=10%  Similarity=0.093  Sum_probs=53.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.++||+||++|.++..++++  + +.|+|||+.+- -...      ...+++.++.+|+.+     .......+|.|+
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~r--g-~~V~aVD~~~l-~~~l------~~~~~V~~~~~d~~~-----~~~~~~~~D~vv  275 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKR--N-MWVYSVDNGPM-AQSL------MDTGQVTWLREDGFK-----FRPTRSNISWMV  275 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--T-CEEEEECSSCC-CHHH------HTTTCEEEECSCTTT-----CCCCSSCEEEEE
T ss_pred             CCCEEEEeCcCCCHHHHHHHHC--C-CEEEEEEhhhc-Chhh------ccCCCeEEEeCcccc-----ccCCCCCcCEEE
Confidence            4789999999999999999988  4 68999998752 2221      134689999999876     222346799988


Q ss_pred             EeCCCC
Q 026219          204 ILCPDP  209 (241)
Q Consensus       204 ~~~~~~  209 (241)
                      .....+
T Consensus       276 sDm~~~  281 (375)
T 4auk_A          276 CDMVEK  281 (375)
T ss_dssp             ECCSSC
T ss_pred             EcCCCC
Confidence            776543

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.07  E-value=4.5e-06  Score=75.20  Aligned_cols=115  Identities=13%  Similarity=0.105  Sum_probs=66.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHH--------HC-------CCCcEEEEEeCCHHHHHHHHHHHHHh-----------CC-CC
Q 026219          124 TLPLMVDIGSGSGRFLIWLAR--------RN-------PDSGNYLGLEIRQKLVKRAEFWVQEL-----------AL-SN  176 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~--------~~-------p~~~~v~giDis~~~v~~a~~~~~~~-----------~l-~n  176 (241)
                      +.-+|+|+|||+|..++.+..        +.       |+ .+|+.-|+..+.....=+.+...           +. .+
T Consensus        52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe-~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~  130 (374)
T 3b5i_A           52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPE-FTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNR  130 (374)
T ss_dssp             CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCC-EEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCB
T ss_pred             CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCc-eeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCC
Confidence            357899999999999988722        22       45 67777777665543332221110           00 01


Q ss_pred             EEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhh-----------ccc-------------------chHHHH
Q 026219          177 IHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHK-----------RRV-------------------VQKPLV  226 (241)
Q Consensus       177 i~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~-----------~r~-------------------~~~~ll  226 (241)
                      -.|+.+........+  .++.++|.|+.++...|..+....           .++                   -...+|
T Consensus       131 ~~f~~gvpgSFy~rl--fP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL  208 (374)
T 3b5i_A          131 SYFVAGVPGSFYRRL--FPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFL  208 (374)
T ss_dssp             CSEEEEEESCTTSCC--SCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecChhhhccc--CCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence            123333332222222  257899999988877775422200           000                   113578


Q ss_pred             HHHHhccccCCEEEc
Q 026219          227 DSIIDYLMPGGKVYF  241 (241)
Q Consensus       227 ~~l~r~LkpGG~l~~  241 (241)
                      +..++.|+|||++++
T Consensus       209 ~~ra~eL~pGG~mvl  223 (374)
T 3b5i_A          209 RARAAEVKRGGAMFL  223 (374)
T ss_dssp             HHHHHHEEEEEEEEE
T ss_pred             HHHHHHhCCCCEEEE
Confidence            889999999999975

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.99  E-value=2.6e-05  Score=73.29  Aligned_cols=134  Identities=15%  Similarity=0.072  Sum_probs=84.5

Q ss_pred             CCCCCCChhhhH-HHhcCCCCCcEEEEcCCccHHHHHHHHHCC-------------CCcEEEEEeCCHHHHHHHHHHHHH
Q 026219          106 SFTVPAPIPDWS-EVYKNPTLPLMVDIGSGSGRFLIWLARRNP-------------DSGNYLGLEIRQKLVKRAEFWVQE  171 (241)
Q Consensus       106 ~~~~~~~~~~~~-~~~~~~~~~~VLDIGCGtG~~~~~la~~~p-------------~~~~v~giDis~~~v~~a~~~~~~  171 (241)
                      +|-.|....++. +......+.+|+|-+||+|.++....+...             . ..++|+|+++.++..|+-++--
T Consensus       198 qfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~-~~i~G~E~~~~~~~la~mNl~l  276 (530)
T 3ufb_A          198 EFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQE-SSIFGGEAKSLPYLLVQMNLLL  276 (530)
T ss_dssp             CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHT-CCEEEECCSHHHHHHHHHHHHH
T ss_pred             eECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhh-hhhhhhhccHHHHHHHHHHHHh
Confidence            344454443333 333333567999999999999988765321             2 3599999999999999998888


Q ss_pred             hCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCC--chhhhh------hhcccchHHHHHHHHhccc-------cC
Q 026219          172 LALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDP--HFKKKH------HKRRVVQKPLVDSIIDYLM-------PG  236 (241)
Q Consensus       172 ~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~--~~~~~~------~~~r~~~~~ll~~l~r~Lk-------pG  236 (241)
                      .|.....+..+|..... .........||+|+.+.|-.  +.+...      .+..-....+++.+.+.||       ||
T Consensus       277 hg~~~~~I~~~dtL~~~-~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~g  355 (530)
T 3ufb_A          277 HGLEYPRIDPENSLRFP-LREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNG  355 (530)
T ss_dssp             HTCSCCEEECSCTTCSC-GGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSC
T ss_pred             cCCccccccccccccCc-hhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCC
Confidence            88776778888876421 00111235699998886641  110000      0000122467888888886       79


Q ss_pred             CEEEc
Q 026219          237 GKVYF  241 (241)
Q Consensus       237 G~l~~  241 (241)
                      |++.|
T Consensus       356 Gr~av  360 (530)
T 3ufb_A          356 GRAAV  360 (530)
T ss_dssp             CEEEE
T ss_pred             ceEEE
Confidence            98754

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.88  E-value=1.1e-05  Score=69.56  Aligned_cols=107  Identities=12%  Similarity=0.123  Sum_probs=63.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..++++.+. ..|+|+|++.++...+... +..+ .++..+..++..     ....+..+|+|+
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa~~~gv-~sV~GvdvG~d~~~~pi~~-~~~g-~~ii~~~~~~dv-----~~l~~~~~DvVL  161 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAASLKNV-KKVMAFTLGVQGHEKPIMR-TTLG-WNLIRFKDKTDV-----FNMEVIPGDTLL  161 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTE-EEEEEECCCCTTSCCCCCC-CBTT-GGGEEEECSCCG-----GGSCCCCCSEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCC-CeeeeEEeccCcccccccc-ccCC-CceEEeeCCcch-----hhcCCCCcCEEE
Confidence            4679999999999999998877665 6799999987642222100 0011 133333333221     122457889887


Q ss_pred             EeCCCCchh-hhhhhcccchHHHHHHHHhccccC--CEEEc
Q 026219          204 ILCPDPHFK-KKHHKRRVVQKPLVDSIIDYLMPG--GKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~-~~~~~~r~~~~~ll~~l~r~LkpG--G~l~~  241 (241)
                      ......... ...+.+   +-.+|+-+.++|+||  |.|++
T Consensus       162 SDmApnsG~~~~D~~r---s~~LL~~A~~~Lk~g~~G~Fv~  199 (282)
T 3gcz_A          162 CDIGESSPSIAVEEQR---TLRVLNCAKQWLQEGNYTEFCI  199 (282)
T ss_dssp             ECCCCCCSCHHHHHHH---HHHHHHHHHHHHHHHCCCEEEE
T ss_pred             ecCccCCCChHHHHHH---HHHHHHHHHHHcCCCCCCcEEE
Confidence            654321110 001111   124588889999999  98874

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.85  E-value=0.00011  Score=65.02  Aligned_cols=87  Identities=9%  Similarity=0.033  Sum_probs=64.1

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~  193 (241)
                      +..+.+...++.++||..||.|..+..++++. +. ++|+|+|+++.+++.++ ++   ...++++++++..+....+..
T Consensus        48 Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~-GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l~~~L~~  122 (347)
T 3tka_A           48 EAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEE-GRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSALGEYVAE  122 (347)
T ss_dssp             HHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTT-CEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHHHHHHHh
Confidence            34444443457899999999999999999986 55 89999999999999984 33   235799999999764332211


Q ss_pred             C-CCCcEeEEEEeC
Q 026219          194 S-YPGPLMLVSILC  206 (241)
Q Consensus       194 ~-~~~~~d~V~~~~  206 (241)
                      . .++.+|.|++..
T Consensus       123 ~g~~~~vDgILfDL  136 (347)
T 3tka_A          123 RDLIGKIDGILLDL  136 (347)
T ss_dssp             TTCTTCEEEEEEEC
T ss_pred             cCCCCcccEEEECC
Confidence            1 124699998765

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.78  E-value=7.1e-06  Score=73.47  Aligned_cols=116  Identities=10%  Similarity=0.100  Sum_probs=74.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHH----------------CCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEcccc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARR----------------NPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANAS  185 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~----------------~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~  185 (241)
                      ++.-+|+|+||++|..++.+...                .|+ ..|+..|+..+.....-+.+..... .+-.|+.+...
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe-~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpg  128 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPE-YQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG  128 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCE-EEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEES
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCc-eEEEecCCCchHHHHHHHhcchhcccCCCEEEEecch
Confidence            34568999999999877754433                355 7899999998887776554422100 12356666554


Q ss_pred             chHHhhccCCCCcEeEEEEeCCCCchhhhhhh-----cc-------------c-------chHHHHHHHHhccccCCEEE
Q 026219          186 VSFKQLVSSYPGPLMLVSILCPDPHFKKKHHK-----RR-------------V-------VQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       186 ~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~-----~r-------------~-------~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .+...++  ++.++|.|+.++...|..+....     .+             .       --..+|+..++.|+|||+++
T Consensus       129 SFy~rlf--p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mv  206 (359)
T 1m6e_X          129 SFYGRLF--PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV  206 (359)
T ss_dssp             CSSSCCS--CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred             hhhhccC--CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence            4333333  57899999888877675432200     00             0       01356888999999999987


Q ss_pred             c
Q 026219          241 F  241 (241)
Q Consensus       241 ~  241 (241)
                      +
T Consensus       207 l  207 (359)
T 1m6e_X          207 L  207 (359)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.62  E-value=0.00011  Score=65.66  Aligned_cols=59  Identities=19%  Similarity=0.031  Sum_probs=50.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS  187 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~  187 (241)
                      +..|||||.|.|.++..|+++... .+|++||+++.++...++..   ..+|++++.+|+.++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~-~~vvavE~D~~l~~~L~~~~---~~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKF---EGSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHT---TTSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCC-CEEEEEecCHHHHHHHHHhc---cCCCEEEEECCccch
Confidence            578999999999999999987433 47999999999999988765   236899999999864

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.59  E-value=9.1e-05  Score=64.29  Aligned_cols=107  Identities=10%  Similarity=0.069  Sum_probs=61.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+||||||++|.++..++++.+- ..|+|+|+...+...... .+..+ .++..+..++. .    ....+..+|+|+
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~gv-~sV~Gvdlg~~~~~~P~~-~~~~~-~~iv~~~~~~d-i----~~l~~~~~DlVl  152 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKEV-MSVKGYTLGIEGHEKPIH-MQTLG-WNIVKFKDKSN-V----FTMPTEPSDTLL  152 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTE-EEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCC-T----TTSCCCCCSEEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcCC-ceeeeEEecccccccccc-ccccC-CceEEeecCce-e----eecCCCCcCEEe
Confidence            4789999999999999999987655 579999997643111000 00001 12222222221 1    122356789887


Q ss_pred             EeCCCCchh-hhhhhcccchHHHHHHHHhccccC-CEEEc
Q 026219          204 ILCPDPHFK-KKHHKRRVVQKPLVDSIIDYLMPG-GKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~-~~~~~~r~~~~~ll~~l~r~LkpG-G~l~~  241 (241)
                      ......... ...+.   .+..+++-+.++|+|| |.|++
T Consensus       153 sD~APnsG~~~~D~~---rs~~LL~~A~~~LkpG~G~FV~  189 (300)
T 3eld_A          153 CDIGESSSNPLVERD---RTMKVLENFERWKHVNTENFCV  189 (300)
T ss_dssp             ECCCCCCSSHHHHHH---HHHHHHHHHHHHCCTTCCEEEE
T ss_pred             ecCcCCCCCHHHHHH---HHHHHHHHHHHHhcCCCCcEEE
Confidence            654221110 00001   1125588889999999 99874

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.59  E-value=0.0003  Score=59.30  Aligned_cols=106  Identities=8%  Similarity=0.062  Sum_probs=67.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-cccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-NASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+||||||++|.++...+.+... ..|+|+|+-..--+.= ...+..|...++|..+ |+..     .  .+..+|.|
T Consensus        78 ~g~~VvDLGaapGGWSq~~a~~~g~-~~V~avdvG~~ghe~P-~~~~s~gwn~v~fk~gvDv~~-----~--~~~~~Dtl  148 (267)
T 3p8z_A           78 PEGRVIDLGCGRGGWSYYCAGLKKV-TEVRGYTKGGPGHEEP-VPMSTYGWNIVKLMSGKDVFY-----L--PPEKCDTL  148 (267)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTSTTE-EEEEEECCCSTTSCCC-CCCCCTTTTSEEEECSCCGGG-----C--CCCCCSEE
T ss_pred             CCCEEEEcCCCCCcHHHHHHHhcCC-CEEEEEecCCCCccCc-chhhhcCcCceEEEeccceee-----c--CCccccEE
Confidence            4679999999999999988887765 6899999975422100 0011346667999998 9743     2  24668988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++...+..+.......|.  -..|+-+.++|++ |.+++
T Consensus       149 lcDIgeSs~~~~vE~~Rt--lrvLela~~wL~~-~~fc~  184 (267)
T 3p8z_A          149 LCDIGESSPSPTVEESRT--IRVLKMVEPWLKN-NQFCI  184 (267)
T ss_dssp             EECCCCCCSCHHHHHHHH--HHHHHHHGGGCSS-CEEEE
T ss_pred             EEecCCCCCChhhhhhHH--HHHHHHHHHhccc-CCEEE
Confidence            876643211111111111  1377778899998 66653

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.54  E-value=8.2e-05  Score=63.28  Aligned_cols=52  Identities=23%  Similarity=0.354  Sum_probs=42.7

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA  173 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~  173 (241)
                      .... .++.+|||..||+|.++....+..   .+++|+|+++..++.++++++.++
T Consensus       207 ~~~~-~~~~~vlD~f~GsGtt~~~a~~~g---r~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          207 RASS-NPNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHC-CTTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHhC-CCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHhcc
Confidence            3344 357899999999999999988873   479999999999999999987554

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.50  E-value=5.6e-05  Score=64.40  Aligned_cols=102  Identities=13%  Similarity=0.144  Sum_probs=57.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCC---CcEEEEEeC--CHHHHHHHHHHHHHhCCCCEEEEEc-cccchHHhhccCCCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPD---SGNYLGLEI--RQKLVKRAEFWVQELALSNIHFLFA-NASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~---~~~v~giDi--s~~~v~~a~~~~~~~~l~ni~~~~~-D~~~~~~~~~~~~~~  197 (241)
                      ++.+|||+||+.|.++...+++.+-   .+.++|+|+  .|-...       ..|..=+.|+.+ |+.+     .  .+.
T Consensus        73 pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-------~~Gv~~i~~~~G~Df~~-----~--~~~  138 (269)
T 2px2_A           73 PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-------SYGWNIVTMKSGVDVFY-----K--PSE  138 (269)
T ss_dssp             CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-------STTGGGEEEECSCCGGG-----S--CCC
T ss_pred             CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-------CCCceEEEeeccCCccC-----C--CCC
Confidence            3789999999999999999886221   134555552  221000       011111355557 9975     2  245


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCC-EEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGG-KVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG-~l~~  241 (241)
                      .+|.|+..............-|.+.  .|+-+.++|+||| .|++
T Consensus       139 ~~DvVLSDMAPnSG~~~vD~~Rs~~--aL~~A~~~Lk~gG~~Fvv  181 (269)
T 2px2_A          139 ISDTLLCDIGESSPSAEIEEQRTLR--ILEMVSDWLSRGPKEFCI  181 (269)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHH--HHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEeCCCCCCCccHHHHHHHHH--HHHHHHHHhhcCCcEEEE
Confidence            7898877653211111111112222  6777789999999 6653

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.48  E-value=0.00013  Score=63.37  Aligned_cols=107  Identities=11%  Similarity=0.119  Sum_probs=65.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-cccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-NASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+||||||++|.++...+.+... ..|+|+|+-..--+.= ...++.+...+.++.+ |+..     +.  +..+|.|
T Consensus        94 ~~~~VlDLGaapGGwsq~~~~~~gv-~~V~avdvG~~~he~P-~~~~ql~w~lV~~~~~~Dv~~-----l~--~~~~D~i  164 (321)
T 3lkz_A           94 PVGKVIDLGCGRGGWCYYMATQKRV-QEVRGYTKGGPGHEEP-QLVQSYGWNIVTMKSGVDVFY-----RP--SECCDTL  164 (321)
T ss_dssp             CCEEEEEETCTTCHHHHHHTTCTTE-EEEEEECCCSTTSCCC-CCCCBTTGGGEEEECSCCTTS-----SC--CCCCSEE
T ss_pred             CCCEEEEeCCCCCcHHHHHHhhcCC-CEEEEEEcCCCCccCc-chhhhcCCcceEEEeccCHhh-----CC--CCCCCEE
Confidence            4569999999999999988877665 5899999976511000 0001123334788877 7753     22  3568888


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~~  241 (241)
                      ++......+.......|.  -..|+-+.++|++| |.|++
T Consensus       165 vcDigeSs~~~~ve~~Rt--l~vLel~~~wL~~~~~~f~~  202 (321)
T 3lkz_A          165 LCDIGESSSSAEVEEHRT--IRVLEMVEDWLHRGPREFCV  202 (321)
T ss_dssp             EECCCCCCSCHHHHHHHH--HHHHHHHHHHHTTCCCEEEE
T ss_pred             EEECccCCCChhhhhhHH--HHHHHHHHHHhccCCCcEEE
Confidence            876643211111111111  13677778899988 87764

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=97.25  E-value=0.0014  Score=55.86  Aligned_cols=106  Identities=16%  Similarity=0.154  Sum_probs=71.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHH-------CCCCcEEEEEe-----CCHH-------------------HHHHHHHHH----
Q 026219          125 LPLMVDIGSGSGRFLIWLARR-------NPDSGNYLGLE-----IRQK-------------------LVKRAEFWV----  169 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~-------~p~~~~v~giD-----is~~-------------------~v~~a~~~~----  169 (241)
                      .+.|+|+|+-.|..+..+++.       +++ .+|+|+|     ..+.                   ..+..++.+    
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~-r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPL-RRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTT-CCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCC-CEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            478999999999999987653       344 6899999     3210                   111122211    


Q ss_pred             --HHhCC--CCEEEEEccccchHHhhccC-CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          170 --QELAL--SNIHFLFANASVSFKQLVSS-YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       170 --~~~~l--~ni~~~~~D~~~~~~~~~~~-~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                        +..+.  ++++++.|++.++++.++.. +...+|.+.+.. +...  .       ....++.+...|+|||.|+|
T Consensus       149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D~Y~--~-------t~~~le~~~p~l~~GGvIv~  215 (257)
T 3tos_A          149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-DLYE--P-------TKAVLEAIRPYLTKGSIVAF  215 (257)
T ss_dssp             TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-CCHH--H-------HHHHHHHHGGGEEEEEEEEE
T ss_pred             hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-cccc--h-------HHHHHHHHHHHhCCCcEEEE
Confidence              12343  58999999999988775432 345799888765 3211  1       13789999999999999986

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.19  E-value=0.00092  Score=58.06  Aligned_cols=99  Identities=16%  Similarity=0.166  Sum_probs=64.7

Q ss_pred             CCCCcEEEEcC------CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC
Q 026219          123 PTLPLMVDIGS------GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       123 ~~~~~VLDIGC------GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      |.+.+|||+|+      -.|++  .+.+..|..+.|+++|+.+-.           ...+ .++++|..+     .. ..
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-----------sda~-~~IqGD~~~-----~~-~~  167 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-----------SDAD-STLIGDCAT-----VH-TA  167 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-----------CSSS-EEEESCGGG-----EE-ES
T ss_pred             cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-----------cCCC-eEEEccccc-----cc-cC
Confidence            67899999995      77884  445556653599999998853           1123 459999764     11 14


Q ss_pred             CcEeEEEEeCCCCchhhhhh---hcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSILCPDPHFKKKHH---KRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~~~~~~---~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.+|+|+........-....   +-..+.+.+++-+.+.|+|||.|++
T Consensus       168 ~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvV  215 (344)
T 3r24_A          168 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV  215 (344)
T ss_dssp             SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence            77999887653211100111   1122567888889999999999874

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.18  E-value=0.00026  Score=61.17  Aligned_cols=103  Identities=15%  Similarity=0.016  Sum_probs=73.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +..+||+-+|||.+++.+.+.  . .+++.+|.++..++..++|++.  .++++++..|+...+....+ +...+|+|++
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~--~-d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~-~~~~fdLVfi  165 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRS--Q-DRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLP-PPEKRGLIFI  165 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCT--T-SEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCS-CTTSCEEEEE
T ss_pred             CCCceeEeCCcHHHHHHHcCC--C-CeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcC-CCCCccEEEE
Confidence            467999999999999998884  3 4899999999999999888754  35799999999776655433 3356898887


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHh--ccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIID--YLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r--~LkpGG~l~~  241 (241)
                      ..|-.. ++       ..+.+++.+.+  .+.|+|.+++
T Consensus       166 DPPYe~-k~-------~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          166 DPSYER-KE-------EYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             CCCCCS-TT-------HHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCCCC-Cc-------HHHHHHHHHHHhCccCCCeEEEE
Confidence            654321 11       12355555544  4568888764

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.10  E-value=0.0015  Score=59.31  Aligned_cols=63  Identities=17%  Similarity=0.074  Sum_probs=51.3

Q ss_pred             CCCCcEEEEcCCccHHHHHHH-HHCCCCcEEEEEeCCHHHHHHHHHHHHH---hCC-CCEEEEEcccc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLA-RRNPDSGNYLGLEIRQKLVKRAEFWVQE---LAL-SNIHFLFANAS  185 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la-~~~p~~~~v~giDis~~~v~~a~~~~~~---~~l-~ni~~~~~D~~  185 (241)
                      .++.+++|||++.|.++..++ +..+...+|+++|.+|...+..+++++.   ++. +|++++..-+.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            357899999999999999988 5565326899999999999999999987   245 68888765443

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.07  E-value=0.0026  Score=55.60  Aligned_cols=108  Identities=17%  Similarity=0.164  Sum_probs=64.6

Q ss_pred             CCcEEEEcCCccHHHHHHH----HHCCC-CcEEEEEeCCH--------H-HHHHHHHHHHHhC---CCC--EEEEEcccc
Q 026219          125 LPLMVDIGSGSGRFLIWLA----RRNPD-SGNYLGLEIRQ--------K-LVKRAEFWVQELA---LSN--IHFLFANAS  185 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la----~~~p~-~~~v~giDis~--------~-~v~~a~~~~~~~~---l~n--i~~~~~D~~  185 (241)
                      .-+|||+|-|+|...+...    +..|. ..+++.+|..+        + ..+..+.......   ..+  +++..+|+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            4679999999998654332    34554 13467777521        1 2222222222211   123  567889998


Q ss_pred             chHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          186 VSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       186 ~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +.++.+   .+..+|.+++.-..| .+    ...+-.+.+++.++++++|||++.
T Consensus       177 ~~l~~l---~~~~~Da~flDgFsP-~k----NPeLWs~e~f~~l~~~~~pgg~la  223 (308)
T 3vyw_A          177 KRIKEV---ENFKADAVFHDAFSP-YK----NPELWTLDFLSLIKERIDEKGYWV  223 (308)
T ss_dssp             HHGGGC---CSCCEEEEEECCSCT-TT----SGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred             HHHhhh---cccceeEEEeCCCCc-cc----CcccCCHHHHHHHHHHhCCCcEEE
Confidence            765543   235789888753222 01    112344699999999999999874

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.96  E-value=0.00069  Score=65.24  Aligned_cols=111  Identities=17%  Similarity=0.222  Sum_probs=69.3

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC-------CC----CcEEEEEeC---CHHHHHHHH-----------HHHHHh-----C-
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN-------PD----SGNYLGLEI---RQKLVKRAE-----------FWVQEL-----A-  173 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~-------p~----~~~v~giDi---s~~~v~~a~-----------~~~~~~-----~-  173 (241)
                      .-+|+|+|.|+|...+.+.+.+       |.    ..+++.+|.   +.+.+..+-           +.++..     | 
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            4689999999999888776542       22    157999999   444444322           112111     1 


Q ss_pred             ----C----CCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          174 ----L----SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       174 ----l----~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                          +    -.++++.+|+.+.++.+....++.+|.+++.-..|. ++    ..+-...+++.+.++++|||++.
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~-~n----p~~w~~~~~~~l~~~~~~g~~~~  208 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPA-KN----PDMWNEQLFNAMARMTRPGGTFS  208 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---C----CTTCSHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCC-CC----hhhhhHHHHHHHHHHhCCCCEEE
Confidence                0    136778899987665542112467998877532220 11    11234699999999999999874

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.93  E-value=0.0037  Score=55.37  Aligned_cols=97  Identities=15%  Similarity=0.166  Sum_probs=63.6

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+||-+|+|. |..+..+++...- ..|+++|.+++.++.+++    .|.+  .++..+-.+..+.+....++.+|.|
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~~~~~gg~D~v  262 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQ----LGAT--HVINSKTQDPVAAIKEITDGGVNFA  262 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH----cCCC--EEecCCccCHHHHHHHhcCCCCcEE
Confidence            578999999986 8888899887543 379999999998888754    3543  2232221122122211123468877


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +-....+              ..++...+.|++||++++
T Consensus       263 id~~g~~--------------~~~~~~~~~l~~~G~iv~  287 (371)
T 1f8f_A          263 LESTGSP--------------EILKQGVDALGILGKIAV  287 (371)
T ss_dssp             EECSCCH--------------HHHHHHHHTEEEEEEEEE
T ss_pred             EECCCCH--------------HHHHHHHHHHhcCCEEEE
Confidence            6443322              678889999999999863

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.74  E-value=0.0026  Score=61.02  Aligned_cols=111  Identities=16%  Similarity=0.195  Sum_probs=70.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC-------CC----CcEEEEEeC---CHHHHHHHHH-----------HHHHhCC-----
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN-------PD----SGNYLGLEI---RQKLVKRAEF-----------WVQELAL-----  174 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~-------p~----~~~v~giDi---s~~~v~~a~~-----------~~~~~~l-----  174 (241)
                      .-+|+|+|.|+|...+...+.+       |.    ..+++++|.   +++.+..+-+           ..+....     
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            4689999999998887765532       22    146999999   7777664332           2222110     


Q ss_pred             ---------CCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          175 ---------SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       175 ---------~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                               -.+++..+|+.+.++.+.......+|.+++.-..|. ++    ..+-...+++.++++++|||++.
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~-~n----p~~w~~~~~~~l~~~~~~g~~~~  216 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPA-KN----PDMWTQNLFNAMARLARPGGTLA  216 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGG-GC----GGGSCHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCc-CC----hhhhhHHHHHHHHHHhCCCCEEE
Confidence                     124567788887665542212467998877543221 11    12345699999999999999874

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=96.69  E-value=0.002  Score=50.70  Aligned_cols=114  Identities=11%  Similarity=0.107  Sum_probs=69.2

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      .|.......-..-|||+|-|+|.+=-+|.+.+|+ -.|+.+|.--..-..+       -.+.-.++.+|+.++++.....
T Consensus        31 ~~a~~~v~~~~GpVlElGLGNGRTydHLRe~~P~-R~I~vfDR~~~~hp~~-------~P~~e~~ilGdi~~tL~~~~~r  102 (174)
T 3iht_A           31 EHAIAQTAGLSGPVYELGLGNGRTYHHLRQHVQG-REIYVFERAVASHPDS-------TPPEAQLILGDIRETLPATLER  102 (174)
T ss_dssp             HHHHHHTTTCCSCEEEECCTTCHHHHHHHHHCCS-SCEEEEESSCCCCGGG-------CCCGGGEEESCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCceEEecCCCChhHHHHHHhCCC-CcEEEEEeeeccCCCC-------CCchHheecccHHHHHHHHHHh
Confidence            4544333333567999999999999999999999 8999999842210000       1123468899998887653222


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +......+-..+......+.-.    ....+=.-+..+|.|||.++
T Consensus       103 ~g~~a~LaHaD~G~g~~~~d~a----~a~~lsplI~~~la~GGi~v  144 (174)
T 3iht_A          103 FGATASLVHADLGGHNREKNDR----FARLISPLIEPHLAQGGLMV  144 (174)
T ss_dssp             HCSCEEEEEECCCCSCHHHHHH----HHHHHHHHHGGGEEEEEEEE
T ss_pred             cCCceEEEEeecCCCCcchhHH----HHHhhhHHHHHHhcCCcEEE
Confidence            2344444444443322222111    11233345688999999875

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.69  E-value=0.0089  Score=52.62  Aligned_cols=97  Identities=9%  Similarity=0.054  Sum_probs=62.6

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcc---ccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN---ASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D---~~~~~~~~~~~~~~~~  199 (241)
                      ++.+||-+|+|. |..+..+++...- .+|+++|.+++..+.+++    .|.+  .++..+   ..+..+.+....+..+
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~~i~~~~~~g~  243 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKE----IGAD--LVLQISKESPQEIARKVEGQLGCKP  243 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH----TTCS--EEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCC--EEEcCcccccchHHHHHHHHhCCCC
Confidence            478899999985 8888899987643 389999999998887653    4543  233222   1122222111112457


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|+-....+              ..++...++|+|||++++
T Consensus       244 D~vid~~g~~--------------~~~~~~~~~l~~~G~iv~  271 (356)
T 1pl8_A          244 EVTIECTGAE--------------ASIQAGIYATRSGGTLVL  271 (356)
T ss_dssp             SEEEECSCCH--------------HHHHHHHHHSCTTCEEEE
T ss_pred             CEEEECCCCh--------------HHHHHHHHHhcCCCEEEE
Confidence            8765443322              577888999999999863

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.45  E-value=0.0085  Score=53.59  Aligned_cols=105  Identities=11%  Similarity=0.006  Sum_probs=63.2

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc---cc-cchHHhhccCCCCc
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA---NA-SVSFKQLVSSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~---D~-~~~~~~~~~~~~~~  198 (241)
                      .+.+||-+|+|. |..+..+++...- .+|+++|.+++.++.+++    .|.   +.+..   |. .+.+....+  ...
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa---~~i~~~~~~~~~~~~~~~~~--g~g  254 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGA-ACVIVGDQNPERLKLLSD----AGF---ETIDLRNSAPLRDQIDQILG--KPE  254 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHT----TTC---EEEETTSSSCHHHHHHHHHS--SSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----cCC---cEEcCCCcchHHHHHHHHhC--CCC
Confidence            578999999986 8899999987533 389999999998887643    343   33322   21 111222221  225


Q ss_pred             EeEEEEeCCCCch---hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHF---KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~---~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|+-....+..   .+..   ..-....++.+.+.|++||++++
T Consensus       255 ~Dvvid~~g~~~~~~~~~~~---~~~~~~~~~~~~~~l~~gG~iv~  297 (398)
T 2dph_A          255 VDCGVDAVGFEAHGLGDEAN---TETPNGALNSLFDVVRAGGAIGI  297 (398)
T ss_dssp             EEEEEECSCTTCBCSGGGTT---SBCTTHHHHHHHHHEEEEEEEEC
T ss_pred             CCEEEECCCCcccccccccc---ccccHHHHHHHHHHHhcCCEEEE
Confidence            8877644433210   0000   00001578889999999999863

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.39  E-value=0.0084  Score=52.41  Aligned_cols=95  Identities=14%  Similarity=0.141  Sum_probs=63.8

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc--cccchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA--NASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~--D~~~~~~~~~~~~~~~~d  200 (241)
                      .+.+||=+|+|. |..+..+++.... .+|+++|.+++..+.+++    .|.+.  ++..  |..+.+....+  ...+|
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~-~~Vi~~~~~~~~~~~~~~----lGa~~--~i~~~~~~~~~v~~~t~--g~g~d  241 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSA-ARVIAVDLDDDRLALARE----VGADA--AVKSGAGAADAIRELTG--GQGAT  241 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESCHHHHHHHHH----TTCSE--EEECSTTHHHHHHHHHG--GGCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----cCCCE--EEcCCCcHHHHHHHHhC--CCCCe
Confidence            478899999985 8888899987655 689999999998888754    45432  2222  22221112211  23588


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+-....+              ..++...+.|++||++++
T Consensus       242 ~v~d~~G~~--------------~~~~~~~~~l~~~G~iv~  268 (345)
T 3jv7_A          242 AVFDFVGAQ--------------STIDTAQQVVAVDGHISV  268 (345)
T ss_dssp             EEEESSCCH--------------HHHHHHHHHEEEEEEEEE
T ss_pred             EEEECCCCH--------------HHHHHHHHHHhcCCEEEE
Confidence            765443332              688889999999999863

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.33  E-value=0.0032  Score=55.69  Aligned_cols=75  Identities=8%  Similarity=0.021  Sum_probs=54.3

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL  205 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~  205 (241)
                      .+++|+.||.|.+.+.+.+..-.-..++++|+++.+++..+.|.     ++..++.+|+.+.....+.  ...+|+++..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~-----~~~~~~~~Di~~~~~~~~~--~~~~D~l~~g   75 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFD--RLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHH--HHCCSEEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc-----cccccccCCHHHccHhHcC--cCCcCEEEEc
Confidence            57999999999999999887421026999999999999887764     3445788999864322111  1257888877


Q ss_pred             CC
Q 026219          206 CP  207 (241)
Q Consensus       206 ~~  207 (241)
                      +|
T Consensus        76 pP   77 (343)
T 1g55_A           76 PP   77 (343)
T ss_dssp             CC
T ss_pred             CC
Confidence            76

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.25  E-value=0.018  Score=50.23  Aligned_cols=95  Identities=18%  Similarity=0.122  Sum_probs=63.4

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+||-+|+|. |..+..+++.. + .+|+++|.+++..+.+++    .|.+  .++..+-.+..+.+.. ..+.+|.|
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~-G-a~Vi~~~~~~~~~~~~~~----lGa~--~~i~~~~~~~~~~~~~-~~g~~d~v  236 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAM-G-LRVAAVDIDDAKLNLARR----LGAE--VAVNARDTDPAAWLQK-EIGGAHGV  236 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHH-HHSSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHHHH----cCCC--EEEeCCCcCHHHHHHH-hCCCCCEE
Confidence            467888899985 99999999976 4 589999999998887654    4543  2232221222222211 12367877


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.....+              ..++.+.+.|+|||++++
T Consensus       237 id~~g~~--------------~~~~~~~~~l~~~G~iv~  261 (340)
T 3s2e_A          237 LVTAVSP--------------KAFSQAIGMVRRGGTIAL  261 (340)
T ss_dssp             EESSCCH--------------HHHHHHHHHEEEEEEEEE
T ss_pred             EEeCCCH--------------HHHHHHHHHhccCCEEEE
Confidence            6544332              778889999999999863

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.23  E-value=0.011  Score=53.10  Aligned_cols=76  Identities=17%  Similarity=0.107  Sum_probs=55.3

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhc---cCCCCcEeEE
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLV---SSYPGPLMLV  202 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~---~~~~~~~d~V  202 (241)
                      -+++|+-||.|.+..-+.+..-.  .+.++|+++.+++..+.|.     ++..++.+|+.+.....+   ......+|+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~--~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFD--VKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCE--EEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCc--EEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence            47999999999999999887433  5789999999988776543     467788999986422111   0023568988


Q ss_pred             EEeCCC
Q 026219          203 SILCPD  208 (241)
Q Consensus       203 ~~~~~~  208 (241)
                      +..+|-
T Consensus        76 ~ggpPC   81 (376)
T 3g7u_A           76 IGGPPC   81 (376)
T ss_dssp             EECCCC
T ss_pred             EecCCC
Confidence            877763

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.22  E-value=0.017  Score=50.58  Aligned_cols=98  Identities=14%  Similarity=0.087  Sum_probs=63.6

Q ss_pred             CCCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC-CcEe
Q 026219          123 PTLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLM  200 (241)
Q Consensus       123 ~~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~-~~~d  200 (241)
                      .++.+||=+|+|. |..+..+++...- .+|+++|.+++.++.+++    .|..  .++..+-.+..+.+....+ ..+|
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~v~~~t~g~g~D  237 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGA-GRIFAVGSRKHCCDIALE----YGAT--DIINYKNGDIVEQILKATDGKGVD  237 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTC-SSEEEECCCHHHHHHHHH----HTCC--EEECGGGSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----hCCc--eEEcCCCcCHHHHHHHHcCCCCCC
Confidence            3478899999985 8888888887543 379999999998887754    4543  2332211222222211112 3589


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+-....+              ..++...+.|+|||++++
T Consensus       238 ~v~d~~g~~--------------~~~~~~~~~l~~~G~~v~  264 (352)
T 3fpc_A          238 KVVIAGGDV--------------HTFAQAVKMIKPGSDIGN  264 (352)
T ss_dssp             EEEECSSCT--------------THHHHHHHHEEEEEEEEE
T ss_pred             EEEECCCCh--------------HHHHHHHHHHhcCCEEEE
Confidence            776544433              677888999999999863

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.10  E-value=0.034  Score=49.21  Aligned_cols=98  Identities=16%  Similarity=0.110  Sum_probs=64.2

Q ss_pred             CCCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc---CCCCc
Q 026219          123 PTLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS---SYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~---~~~~~  198 (241)
                      ..+.+||=+|+|. |..+..+++...- .+|+++|.+++..+.+++    .|.+.  ++..+-.+..+.+..   ..++.
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~i~~~~~~~~gg  253 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGA-TTVILSTRQATKRRLAEE----VGATA--TVDPSAGDVVEAIAGPVGLVPGG  253 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCHHHHHHHHH----HTCSE--EECTTSSCHHHHHHSTTSSSTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCCE--EECCCCcCHHHHHHhhhhccCCC
Confidence            3478899899985 8888889987643 389999999998887754    45432  222111122122221   22347


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|+-....+              ..++.+.+.|++||++++
T Consensus       254 ~Dvvid~~G~~--------------~~~~~~~~~l~~~G~vv~  282 (370)
T 4ej6_A          254 VDVVIECAGVA--------------ETVKQSTRLAKAGGTVVI  282 (370)
T ss_dssp             EEEEEECSCCH--------------HHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEECCCCH--------------HHHHHHHHHhccCCEEEE
Confidence            88776443322              678889999999999864

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.99  E-value=0.0051  Score=53.85  Aligned_cols=59  Identities=17%  Similarity=0.201  Sum_probs=45.8

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcccc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS  185 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~  185 (241)
                      .++..|||--||+|.++....+.+   -+++|+|+++..++.+++++++.+. ....+..|+.
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~g---r~~ig~e~~~~~~~~~~~r~~~~~~-~~~~~~~~~~  309 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERES---RKWISFEMKPEYVAASAFRFLDNNI-SEEKITDIYN  309 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHGGGSCSCS-CHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHhccc-chHHHHHHHH
Confidence            357899999999999999988773   4799999999999999998765543 2334444444

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.90  E-value=0.03  Score=49.45  Aligned_cols=96  Identities=16%  Similarity=0.217  Sum_probs=62.8

Q ss_pred             CCCcEEEEc-CC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIG-SG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIG-CG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+||=+| +| .|..+..+++...+ .+|+++|.+++..+.+++    .|.+.  ++... .+..+.+.......+|.
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g-~~Vi~~~~~~~~~~~~~~----lGad~--vi~~~-~~~~~~v~~~~~~g~Dv  242 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTD-LTVIATASRPETQEWVKS----LGAHH--VIDHS-KPLAAEVAALGLGAPAF  242 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHH----TTCSE--EECTT-SCHHHHHHTTCSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHH----cCCCE--EEeCC-CCHHHHHHHhcCCCceE
Confidence            467899888 55 68999999987445 689999999998887754    45432  22211 11222222222356887


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+-....              ...++.+.+.|++||++++
T Consensus       243 vid~~g~--------------~~~~~~~~~~l~~~G~iv~  268 (363)
T 4dvj_A          243 VFSTTHT--------------DKHAAEIADLIAPQGRFCL  268 (363)
T ss_dssp             EEECSCH--------------HHHHHHHHHHSCTTCEEEE
T ss_pred             EEECCCc--------------hhhHHHHHHHhcCCCEEEE
Confidence            6543322              2678889999999999863

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.77  E-value=0.0084  Score=52.54  Aligned_cols=52  Identities=12%  Similarity=0.082  Sum_probs=41.3

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCH---HHHHHHHHHHHHhC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQ---KLVKRAEFWVQELA  173 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~---~~v~~a~~~~~~~~  173 (241)
                      .... .++..|||--||+|.++....+..   -+.+|+|+++   ..++.+++++++.+
T Consensus       237 ~~~~-~~~~~vlDpF~GsGtt~~aa~~~~---r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          237 RALS-HPGSTVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHS-CTTCEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHhC-CCCCEEEecCCCCCHHHHHHHHcC---CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            3344 358899999999999999998884   4699999999   99999999887654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.72  E-value=0.02  Score=51.07  Aligned_cols=108  Identities=9%  Similarity=-0.029  Sum_probs=63.0

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcc----ccchHHhhccCCCCc
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN----ASVSFKQLVSSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D----~~~~~~~~~~~~~~~  198 (241)
                      .+.+||-+|+|. |..+..+++...- ..|+++|.+++.++.+++    .|.   +.+...    ..+.+....  ....
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga-~~Vi~~~~~~~~~~~a~~----lGa---~~i~~~~~~~~~~~v~~~t--~g~g  254 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKA----QGF---EIADLSLDTPLHEQIAALL--GEPE  254 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH----TTC---EEEETTSSSCHHHHHHHHH--SSSC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHH----cCC---cEEccCCcchHHHHHHHHh--CCCC
Confidence            468899999985 8889999998643 379999999998888754    454   233221    111121211  1235


Q ss_pred             EeEEEEeCCCCchh-hhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFK-KKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~-~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|+-....+... ........-....++...+.|++||++++
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~  298 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI  298 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEE
Confidence            88776443322100 00000000001578889999999999863

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.71  E-value=0.05  Score=47.57  Aligned_cols=96  Identities=11%  Similarity=0.055  Sum_probs=61.1

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcc-ccchHHhhccCC----CC
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN-ASVSFKQLVSSY----PG  197 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D-~~~~~~~~~~~~----~~  197 (241)
                      ++.+||-+|+|. |..+..+++...  .+|+++|.+++..+.+++    .|.+  .++..+ ..+..+.+....    ..
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~--~~~~~~~~~~~~~~i~~~~~~~~g~  239 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN----CGAD--VTLVVDPAKEEESSIIERIRSAIGD  239 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTCS--EEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCC--EEEcCcccccHHHHHHHHhccccCC
Confidence            478899999884 888888888764  479999999998887753    4543  222211 011111111100    13


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+|.|+-....+              ..++...+.|+|||++++
T Consensus       240 g~D~vid~~g~~--------------~~~~~~~~~l~~~G~iv~  269 (352)
T 1e3j_A          240 LPNVTIDCSGNE--------------KCITIGINITRTGGTLML  269 (352)
T ss_dssp             CCSEEEECSCCH--------------HHHHHHHHHSCTTCEEEE
T ss_pred             CCCEEEECCCCH--------------HHHHHHHHHHhcCCEEEE
Confidence            578765443322              577888999999999863

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.71  E-value=0.035  Score=49.05  Aligned_cols=94  Identities=10%  Similarity=0.165  Sum_probs=61.6

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-----cccchHHhhccCCCC
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-----NASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-----D~~~~~~~~~~~~~~  197 (241)
                      .+.+||-+|+|. |..+..+++...- .+|+++|.+++.++.+++    .|.+.  ++..     |..+.+....   ++
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~~~~---~~  261 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAKV----FGATD--FVNPNDHSEPISQVLSKMT---NG  261 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH----TTCCE--EECGGGCSSCHHHHHHHHH---TS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----hCCce--EEeccccchhHHHHHHHHh---CC
Confidence            468899999874 8888888887643 379999999998887753    45432  2221     1111111221   23


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~~  241 (241)
                      .+|.|+-....+              ..++...+.|++| |++++
T Consensus       262 g~D~vid~~g~~--------------~~~~~~~~~l~~~~G~iv~  292 (374)
T 1cdo_A          262 GVDFSLECVGNV--------------GVMRNALESCLKGWGVSVL  292 (374)
T ss_dssp             CBSEEEECSCCH--------------HHHHHHHHTBCTTTCEEEE
T ss_pred             CCCEEEECCCCH--------------HHHHHHHHHhhcCCcEEEE
Confidence            688766443322              6788899999999 98863

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.67  E-value=0.045  Score=48.53  Aligned_cols=97  Identities=18%  Similarity=0.051  Sum_probs=62.6

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcc---ccchHHhhccCCC-Cc
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN---ASVSFKQLVSSYP-GP  198 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D---~~~~~~~~~~~~~-~~  198 (241)
                      ++.+||-+|+| .|..+..+++...- .+|+++|.+++.++.+++    .|.+  .++..+   -.+..+.+....+ ..
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~~~~v~~~~~g~g  267 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEE----IGAD--LTLNRRETSVEERRKAIMDITHGRG  267 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHHHHTTTSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHH----cCCc--EEEeccccCcchHHHHHHHHhCCCC
Confidence            46899999977 58888888888652 389999999998887753    4543  233322   1111111111112 25


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|+-....+              ..++...+.|++||++++
T Consensus       268 ~Dvvid~~g~~--------------~~~~~~~~~l~~~G~iv~  296 (380)
T 1vj0_A          268 ADFILEATGDS--------------RALLEGSELLRRGGFYSV  296 (380)
T ss_dssp             EEEEEECSSCT--------------THHHHHHHHEEEEEEEEE
T ss_pred             CcEEEECCCCH--------------HHHHHHHHHHhcCCEEEE
Confidence            88776544333              567788999999999863

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.65  E-value=0.054  Score=47.52  Aligned_cols=100  Identities=17%  Similarity=0.053  Sum_probs=62.6

Q ss_pred             CCCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcc--ccchHHhhccC-CCCc
Q 026219          123 PTLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN--ASVSFKQLVSS-YPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D--~~~~~~~~~~~-~~~~  198 (241)
                      ..+.+||=+|+|. |..+..+++...- ..|+++|.+++..+.+++.    .-.-+.....+  -.+..+.+... ....
T Consensus       178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l----~~~~~~~~~~~~~~~~~~~~v~~~t~g~g  252 (363)
T 3m6i_A          178 RLGDPVLICGAGPIGLITMLCAKAAGA-CPLVITDIDEGRLKFAKEI----CPEVVTHKVERLSAEESAKKIVESFGGIE  252 (363)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTC-CSEEEEESCHHHHHHHHHH----CTTCEEEECCSCCHHHHHHHHHHHTSSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh----chhcccccccccchHHHHHHHHHHhCCCC
Confidence            3467888899985 8888999987643 2499999999999888763    11122222111  11111111111 1245


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|+-....+              ..++.+.+.|++||++++
T Consensus       253 ~Dvvid~~g~~--------------~~~~~~~~~l~~~G~iv~  281 (363)
T 3m6i_A          253 PAVALECTGVE--------------SSIAAAIWAVKFGGKVFV  281 (363)
T ss_dssp             CSEEEECSCCH--------------HHHHHHHHHSCTTCEEEE
T ss_pred             CCEEEECCCCh--------------HHHHHHHHHhcCCCEEEE
Confidence            78765443322              678889999999999863

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.57  E-value=0.026  Score=50.03  Aligned_cols=97  Identities=13%  Similarity=0.135  Sum_probs=62.6

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcc--ccchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFAN--ASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D--~~~~~~~~~~~~~~~~d  200 (241)
                      .+.+||=+|+| .|..+..+++...- .+|+++|.+++.++.+++    .|.+.  ++...  -.+..+.+....++.+|
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga-~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~i~~~~~gg~D  265 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGA-SRIIGIDIDSKKYETAKK----FGVNE--FVNPKDHDKPIQEVIVDLTDGGVD  265 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTC-SCEEEECSCTTHHHHHHT----TTCCE--EECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCcE--EEccccCchhHHHHHHHhcCCCCC
Confidence            46889999998 48888888887543 379999999998887753    45432  22211  11111111111234688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~~  241 (241)
                      .|+-....+              ..++...+.|++| |++++
T Consensus       266 ~vid~~g~~--------------~~~~~~~~~l~~g~G~iv~  293 (378)
T 3uko_A          266 YSFECIGNV--------------SVMRAALECCHKGWGTSVI  293 (378)
T ss_dssp             EEEECSCCH--------------HHHHHHHHTBCTTTCEEEE
T ss_pred             EEEECCCCH--------------HHHHHHHHHhhccCCEEEE
Confidence            776544432              7788899999997 98863

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.48  E-value=0.039  Score=48.16  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=60.9

Q ss_pred             CCCcEEEEcCC--ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC-CcEe
Q 026219          124 TLPLMVDIGSG--SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCG--tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~-~~~d  200 (241)
                      ++.+||-+|+|  .|..+..+++...+ .+|+++|.+++..+.+++    .+..  .++...-.+..+.+..... +.+|
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~G-a~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~~d  242 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKR----AGAD--YVINASMQDPLAEIRRITESKGVD  242 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCC--EEecCCCccHHHHHHHHhcCCCce
Confidence            47899999998  66777777776524 689999999988887743    3432  1222111122111111112 4688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++-....+              ..++.+.+.|++||++++
T Consensus       243 ~vi~~~g~~--------------~~~~~~~~~l~~~G~iv~  269 (347)
T 1jvb_A          243 AVIDLNNSE--------------KTLSVYPKALAKQGKYVM  269 (347)
T ss_dssp             EEEESCCCH--------------HHHTTGGGGEEEEEEEEE
T ss_pred             EEEECCCCH--------------HHHHHHHHHHhcCCEEEE
Confidence            776544322              577888999999998863

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.47  E-value=0.07  Score=47.02  Aligned_cols=97  Identities=11%  Similarity=0.058  Sum_probs=61.8

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccc--cchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA--SVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~--~~~~~~~~~~~~~~~d  200 (241)
                      .+.+||=+|+|. |..+..+++...- .+|+++|.+++..+.+++    .|.+.  ++..+-  .+..+.+....++.+|
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~i~~~t~gg~D  263 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIE----LGATE--CLNPKDYDKPIYEVICEKTNGGVD  263 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH----cCCcE--EEecccccchHHHHHHHHhCCCCC
Confidence            468899999874 8888888887543 379999999998887753    45432  222110  1111111111124688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~~  241 (241)
                      .|+-....+              ..++...+.|++| |++++
T Consensus       264 vvid~~g~~--------------~~~~~~~~~l~~~~G~iv~  291 (373)
T 1p0f_A          264 YAVECAGRI--------------ETMMNALQSTYCGSGVTVV  291 (373)
T ss_dssp             EEEECSCCH--------------HHHHHHHHTBCTTTCEEEE
T ss_pred             EEEECCCCH--------------HHHHHHHHHHhcCCCEEEE
Confidence            766443322              6788899999999 98863

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.47  E-value=0.084  Score=46.52  Aligned_cols=97  Identities=10%  Similarity=0.067  Sum_probs=61.7

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccc--cchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA--SVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~--~~~~~~~~~~~~~~~d  200 (241)
                      .+.+||-+|+|. |..+..+++...- .+|+++|.+++.++.+++    .|..  .++..+-  .+..+.+....++.+|
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~~~~~~~~~~g~D  263 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGA-ARIIGVDINKDKFAKAKE----VGAT--ECVNPQDYKKPIQEVLTEMSNGGVD  263 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCc--eEecccccchhHHHHHHHHhCCCCc
Confidence            468899999874 8888888887643 379999999998887753    4543  2222110  1111111111124688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~~  241 (241)
                      .|+-....+              ..++...+.|++| |++++
T Consensus       264 ~vid~~g~~--------------~~~~~~~~~l~~~~G~iv~  291 (374)
T 2jhf_A          264 FSFEVIGRL--------------DTMVTALSCCQEAYGVSVI  291 (374)
T ss_dssp             EEEECSCCH--------------HHHHHHHHHBCTTTCEEEE
T ss_pred             EEEECCCCH--------------HHHHHHHHHhhcCCcEEEE
Confidence            766443332              6788889999999 98863

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.45  E-value=0.031  Score=49.06  Aligned_cols=71  Identities=11%  Similarity=-0.011  Sum_probs=52.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..+++|+.||.|.+.+.+.+..-  -.++++|+++.+++..+.|..     +..  .+|+.+.....+    ..+|+++.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~-----~~~--~~Di~~~~~~~~----~~~D~l~~   77 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFG-----EKP--EGDITQVNEKTI----PDHDILCA   77 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHS-----CCC--BSCGGGSCGGGS----CCCSEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcC-----CCC--cCCHHHcCHhhC----CCCCEEEE
Confidence            46899999999999999988743  368899999999998887752     111  688876322211    24798888


Q ss_pred             eCCC
Q 026219          205 LCPD  208 (241)
Q Consensus       205 ~~~~  208 (241)
                      .+|-
T Consensus        78 gpPC   81 (327)
T 2c7p_A           78 GFPC   81 (327)
T ss_dssp             ECCC
T ss_pred             CCCC
Confidence            7764

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.44  E-value=0.15  Score=44.76  Aligned_cols=107  Identities=14%  Similarity=0.144  Sum_probs=70.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC---------------------CCCEEEEEcc
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA---------------------LSNIHFLFAN  183 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~---------------------l~ni~~~~~D  183 (241)
                      ...|+.+|||.......+...+++ ..++-||. |++++.-++.+.+.+                     -.+.+++-+|
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~-~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPH-LAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTT-EEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCC-CEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            578999999999999999987777 78999999 888888887776641                     2578999999


Q ss_pred             ccch--HHhhccC-CC-CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          184 ASVS--FKQLVSS-YP-GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       184 ~~~~--~~~~~~~-~~-~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +.+.  ++..+.. .+ ....+++.-....+....      -..++++.+.... |+|.++
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~------~~~~ll~~ia~~~-~~~~~v  229 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNN------ESQLLINTIMSKF-SHGLWI  229 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH------HHHHHHHHHHHHC-SSEEEE
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHH------HHHHHHHHHHhhC-CCcEEE
Confidence            9862  2221111 12 233444433222222111      1247888888776 667653

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.44  E-value=0.046  Score=48.25  Aligned_cols=94  Identities=14%  Similarity=0.130  Sum_probs=61.6

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-----cccchHHhhccCCCC
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-----NASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-----D~~~~~~~~~~~~~~  197 (241)
                      .+.+||=+|+| .|..+..+++...- .+|+++|.+++..+.+++    .|...  ++..     |+.+.+....   ++
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~v~~~~---~~  264 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKA----LGATD--CLNPRELDKPVQDVITELT---AG  264 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHHHH---TS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCcE--EEccccccchHHHHHHHHh---CC
Confidence            46789999988 48888888887643 389999999998887653    45432  2221     1111121221   23


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~~  241 (241)
                      .+|.|+-....+              ..++.+.+.|++| |++++
T Consensus       265 g~Dvvid~~G~~--------------~~~~~~~~~l~~~~G~iv~  295 (376)
T 1e3i_A          265 GVDYSLDCAGTA--------------QTLKAAVDCTVLGWGSCTV  295 (376)
T ss_dssp             CBSEEEESSCCH--------------HHHHHHHHTBCTTTCEEEE
T ss_pred             CccEEEECCCCH--------------HHHHHHHHHhhcCCCEEEE
Confidence            688765443322              6788899999999 98863

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.40  E-value=0.063  Score=46.84  Aligned_cols=97  Identities=12%  Similarity=0.070  Sum_probs=61.6

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC-CCcEeE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY-PGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~-~~~~d~  201 (241)
                      ++.+||-+|+| .|..+..+++.... .+|+++|.+++..+.+++    .|...  ++..+-.+..+.+.... ...+|.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga-~~Vi~~~~~~~~~~~~~~----~Ga~~--~~~~~~~~~~~~v~~~~~g~g~D~  239 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGA-YPVIVSEPSDFRRELAKK----VGADY--VINPFEEDVVKEVMDITDGNGVDV  239 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CSEEEECSCHHHHHHHHH----HTCSE--EECTTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCCE--EECCCCcCHHHHHHHHcCCCCCCE
Confidence            46889999997 47888888887532 279999999988877753    35432  22221112111211111 235887


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+-....+              ..++.+.+.|++||++++
T Consensus       240 vid~~g~~--------------~~~~~~~~~l~~~G~iv~  265 (348)
T 2d8a_A          240 FLEFSGAP--------------KALEQGLQAVTPAGRVSL  265 (348)
T ss_dssp             EEECSCCH--------------HHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCCH--------------HHHHHHHHHHhcCCEEEE
Confidence            76554332              677888999999998863

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.38  E-value=0.043  Score=48.35  Aligned_cols=97  Identities=12%  Similarity=0.127  Sum_probs=61.6

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccc--cchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA--SVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~--~~~~~~~~~~~~~~~d  200 (241)
                      .+.+||-+|+|. |..+..+++...- .+|+++|.+++..+.+++    .|...  ++..+-  .+..+.+....++.+|
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga-~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~v~~~~~~g~D  262 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKE----FGATE--CINPQDFSKPIQEVLIEMTDGGVD  262 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH----HTCSE--EECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCce--EeccccccccHHHHHHHHhCCCCC
Confidence            467899999874 7888888887533 379999999998888754    45432  222110  1111111111124688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~~  241 (241)
                      .|+-....+              ..++...+.|++| |++++
T Consensus       263 ~vid~~g~~--------------~~~~~~~~~l~~~~G~iv~  290 (373)
T 2fzw_A          263 YSFECIGNV--------------KVMRAALEACHKGWGVSVV  290 (373)
T ss_dssp             EEEECSCCH--------------HHHHHHHHTBCTTTCEEEE
T ss_pred             EEEECCCcH--------------HHHHHHHHhhccCCcEEEE
Confidence            766443322              6788899999999 98863

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.37  E-value=0.1  Score=45.30  Aligned_cols=98  Identities=16%  Similarity=0.123  Sum_probs=61.4

Q ss_pred             CCCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEe
Q 026219          123 PTLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       123 ~~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      .++.+||=+|+|. |.++..+++.... .+|+++|.+++..+.+++    .|... +..-..|..+.+....  ....+|
T Consensus       162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g-~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t--~g~g~d  234 (348)
T 4eez_A          162 KPGDWQVIFGAGGLGNLAIQYAKNVFG-AKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT--GGLGVQ  234 (348)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTSC-CEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT--TSSCEE
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCC-CEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc--CCCCce
Confidence            3478899999985 4566667776656 799999999998777653    45432 2222233332222222  123466


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++.....              ...++...+.|++||++++
T Consensus       235 ~~~~~~~~--------------~~~~~~~~~~l~~~G~~v~  261 (348)
T 4eez_A          235 SAIVCAVA--------------RIAFEQAVASLKPMGKMVA  261 (348)
T ss_dssp             EEEECCSC--------------HHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEeccC--------------cchhheeheeecCCceEEE
Confidence            65544332              2778888999999998763

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.26  E-value=0.041  Score=48.04  Aligned_cols=88  Identities=11%  Similarity=0.086  Sum_probs=61.3

Q ss_pred             CCCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+||=+|+|. |..+..+++.. + .+|+++|.+++..+.+++    .|.+.  ++ .|...     +   ...+|.
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~-G-a~Vi~~~~~~~~~~~~~~----lGa~~--v~-~~~~~-----~---~~~~D~  237 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAM-G-AEVSVFARNEHKKQDALS----MGVKH--FY-TDPKQ-----C---KEELDF  237 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHT-T-CEEEEECSSSTTHHHHHH----TTCSE--EE-SSGGG-----C---CSCEEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHHHh----cCCCe--ec-CCHHH-----H---hcCCCE
Confidence            3578899999985 88888899875 4 589999999998887654    45432  22 33321     2   226887


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+-....+              ..++...+.|+|||++++
T Consensus       238 vid~~g~~--------------~~~~~~~~~l~~~G~iv~  263 (348)
T 3two_A          238 IISTIPTH--------------YDLKDYLKLLTYNGDLAL  263 (348)
T ss_dssp             EEECCCSC--------------CCHHHHHTTEEEEEEEEE
T ss_pred             EEECCCcH--------------HHHHHHHHHHhcCCEEEE
Confidence            76544433              356678899999999864

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.11  E-value=0.062  Score=47.51  Aligned_cols=92  Identities=13%  Similarity=0.122  Sum_probs=60.5

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+||-+|+|. |..+..+++.. + .+|+++|.+++.++.+++    .|..  .++..+-.+.....    ...+|.|
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~-G-a~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~----~~g~Dvv  261 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAM-G-AHVVAFTTSEAKREAAKA----LGAD--EVVNSRNADEMAAH----LKSFDFI  261 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESSGGGHHHHHH----HTCS--EEEETTCHHHHHTT----TTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHH----cCCc--EEeccccHHHHHHh----hcCCCEE
Confidence            478899999984 88888888876 4 579999999998887754    4543  22222111111111    2468877


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +-....+              ..++...+.|++||++++
T Consensus       262 id~~g~~--------------~~~~~~~~~l~~~G~iv~  286 (369)
T 1uuf_A          262 LNTVAAP--------------HNLDDFTTLLKRDGTMTL  286 (369)
T ss_dssp             EECCSSC--------------CCHHHHHTTEEEEEEEEE
T ss_pred             EECCCCH--------------HHHHHHHHHhccCCEEEE
Confidence            6444332              345667899999998863

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.11  E-value=0.07  Score=42.41  Aligned_cols=95  Identities=9%  Similarity=-0.041  Sum_probs=57.7

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEe
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d  200 (241)
                      ++.+||.+|+  |.|..+..+++.. + .+|+++|.+++..+.+++    .+..  ..+..+-.+..+.+... ....+|
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G-~~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~~~~~~~D  109 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMI-G-ARIYTTAGSDAKREMLSR----LGVE--YVGDSRSVDFADEILELTDGYGVD  109 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHH-T-CEEEEEESSHHHHHHHHT----TCCS--EEEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHH----cCCC--EEeeCCcHHHHHHHHHHhCCCCCe
Confidence            4688999994  4677777776654 4 589999999987766543    3432  12221111111221111 123588


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++.+. .+              ..++...+.|+|||++++
T Consensus       110 ~vi~~~-g~--------------~~~~~~~~~l~~~G~~v~  135 (198)
T 1pqw_A          110 VVLNSL-AG--------------EAIQRGVQILAPGGRFIE  135 (198)
T ss_dssp             EEEECC-CT--------------HHHHHHHHTEEEEEEEEE
T ss_pred             EEEECC-ch--------------HHHHHHHHHhccCCEEEE
Confidence            776443 22              567788999999998863

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.84  E-value=0.084  Score=46.42  Aligned_cols=95  Identities=12%  Similarity=0.062  Sum_probs=61.4

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEeE
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d~  201 (241)
                      .+.+||=+|+|. |..+..+++.. + .+|+++|.+++.++.+++    .|..  .++..+..+..+.+... ....+|.
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~-G-a~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~v~~~~~g~g~D~  260 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKAT-G-AEVIVTSSSREKLDRAFA----LGAD--HGINRLEEDWVERVYALTGDRGADH  260 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-C-CEEEEEecCchhHHHHHH----cCCC--EEEcCCcccHHHHHHHHhCCCCceE
Confidence            578999999884 88888888875 4 589999999998887654    4543  22322212222221111 1236887


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+-... .              ..++...+.|+|||++++
T Consensus       261 vid~~g-~--------------~~~~~~~~~l~~~G~iv~  285 (363)
T 3uog_A          261 ILEIAG-G--------------AGLGQSLKAVAPDGRISV  285 (363)
T ss_dssp             EEEETT-S--------------SCHHHHHHHEEEEEEEEE
T ss_pred             EEECCC-h--------------HHHHHHHHHhhcCCEEEE
Confidence            765544 2              345667889999998863

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=94.83  E-value=0.15  Score=44.25  Aligned_cols=96  Identities=15%  Similarity=0.056  Sum_probs=60.8

Q ss_pred             CCCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE---ccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF---ANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~---~D~~~~~~~~~~~~~~~  198 (241)
                      .++.+||=+|+| .|..+..+++.... ..++++|.+++.++.+++    .|..  ..+.   .|..+......+  ...
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~-~~vi~~~~~~~k~~~a~~----lGa~--~~i~~~~~~~~~~~~~~~~--~~g  229 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDISSEKLALAKS----FGAM--QTFNSSEMSAPQMQSVLRE--LRF  229 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHGG--GCS
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCC-cEEEEEechHHHHHHHHH----cCCe--EEEeCCCCCHHHHHHhhcc--cCC
Confidence            357889999998 46677778887655 578999999998887754    4543  2222   222221222211  233


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|+-....+              ..++...++|++||++.+
T Consensus       230 ~d~v~d~~G~~--------------~~~~~~~~~l~~~G~~v~  258 (346)
T 4a2c_A          230 NQLILETAGVP--------------QTVELAVEIAGPHAQLAL  258 (346)
T ss_dssp             SEEEEECSCSH--------------HHHHHHHHHCCTTCEEEE
T ss_pred             ccccccccccc--------------chhhhhhheecCCeEEEE
Confidence            56554333322              778889999999998863

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.82  E-value=0.08  Score=46.12  Aligned_cols=95  Identities=13%  Similarity=0.072  Sum_probs=62.0

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccc-cchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA-SVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~-~~~~~~~~~~~~~~~d  200 (241)
                      ++.+||-+|+|. |..+..+++.. |+ .+|+++|.|++..+.+++    .|.+.  ++..+- .+....+..  ...+|
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~G-a~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~--g~g~D  240 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKN-ITIVGISRSKKHRDFALE----LGADY--VSEMKDAESLINKLTD--GLGAS  240 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHH----HTCSE--EECHHHHHHHHHHHHT--TCCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHHHHH----hCCCE--EeccccchHHHHHhhc--CCCcc
Confidence            578999999974 78888888865 35 689999999998887754    35432  221111 111222221  23688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+-....+              ..++.+.+.|+|||++++
T Consensus       241 ~vid~~g~~--------------~~~~~~~~~l~~~G~iv~  267 (344)
T 2h6e_A          241 IAIDLVGTE--------------ETTYNLGKLLAQEGAIIL  267 (344)
T ss_dssp             EEEESSCCH--------------HHHHHHHHHEEEEEEEEE
T ss_pred             EEEECCCCh--------------HHHHHHHHHhhcCCEEEE
Confidence            776443322              578889999999998863

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.76  E-value=0.085  Score=45.99  Aligned_cols=93  Identities=12%  Similarity=0.091  Sum_probs=60.5

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE-c---cccchHHhhccCCCC
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF-A---NASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~-~---D~~~~~~~~~~~~~~  197 (241)
                      .+.+||-+|+  |.|..+..+++.. + .+|+++|.+++..+.+++    .+..  .++. .   |+.+.+....   ++
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~-G-a~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~~~---~~  237 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAM-G-YRVLGIDGGEGKEELFRS----IGGE--VFIDFTKEKDIVGAVLKAT---DG  237 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEECSTTHHHHHHH----TTCC--EEEETTTCSCHHHHHHHHH---TS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-C-CcEEEEcCCHHHHHHHHH----cCCc--eEEecCccHhHHHHHHHHh---CC
Confidence            4689999998  4778888888765 4 589999999887776643    3432  2221 1   1111122222   22


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+|.++.....+              ..++.+.+.|++||++++
T Consensus       238 ~~D~vi~~~g~~--------------~~~~~~~~~l~~~G~iv~  267 (347)
T 2hcy_A          238 GAHGVINVSVSE--------------AAIEASTRYVRANGTTVL  267 (347)
T ss_dssp             CEEEEEECSSCH--------------HHHHHHTTSEEEEEEEEE
T ss_pred             CCCEEEECCCcH--------------HHHHHHHHHHhcCCEEEE
Confidence            688776554322              678889999999998863

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.75  E-value=0.15  Score=38.44  Aligned_cols=95  Identities=12%  Similarity=0.014  Sum_probs=54.7

Q ss_pred             CCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ..+|+=+|+|. |.......... + ..|+++|.+++.++.+++       ..+.++.+|+.+. +.+....-...|.|+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~-g-~~v~vid~~~~~~~~~~~-------~g~~~i~gd~~~~-~~l~~a~i~~ad~vi   76 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS-D-IPLVVIETSRTRVDELRE-------RGVRAVLGNAANE-EIMQLAHLECAKWLI   76 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-T-CCEEEEESCHHHHHHHHH-------TTCEEEESCTTSH-HHHHHTTGGGCSEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-C-CCEEEEECCHHHHHHHHH-------cCCCEEECCCCCH-HHHHhcCcccCCEEE
Confidence            35688888863 44433333332 3 579999999998877643       2467889998752 111110123567777


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +..++...           ...+-...+.+.|+..++
T Consensus        77 ~~~~~~~~-----------n~~~~~~a~~~~~~~~ii  102 (140)
T 3fwz_A           77 LTIPNGYE-----------AGEIVASARAKNPDIEII  102 (140)
T ss_dssp             ECCSCHHH-----------HHHHHHHHHHHCSSSEEE
T ss_pred             EECCChHH-----------HHHHHHHHHHHCCCCeEE
Confidence            77665311           122333455566776654

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=94.73  E-value=0.093  Score=45.36  Aligned_cols=79  Identities=13%  Similarity=0.074  Sum_probs=55.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGN-YLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~-v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ...+++|+-||.|.+...+.+..-. .. ++++|+++.+++.-+.|.     ++..++.+|+.+.....+.. .+.+|++
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~-~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~-~~~~Dll   87 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQ-VDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQE-WGPFDLV   87 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBC-EEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHH-TCCCSEE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCc-cceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcc-cCCcCEE
Confidence            3568999999999999998887433 23 699999999887765542     34567889998743222211 1468888


Q ss_pred             EEeCCCC
Q 026219          203 SILCPDP  209 (241)
Q Consensus       203 ~~~~~~~  209 (241)
                      +..+|-+
T Consensus        88 ~ggpPCQ   94 (295)
T 2qrv_A           88 IGGSPCN   94 (295)
T ss_dssp             EECCCCG
T ss_pred             EecCCCc
Confidence            8776643

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.71  E-value=0.084  Score=46.31  Aligned_cols=79  Identities=10%  Similarity=-0.045  Sum_probs=54.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEE-EEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNY-LGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v-~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ..+++|+.||.|.+..-+.+..-+.-.+ .++|+++.+++.-+.|.   +  +. ++.+|+.+.....++  ...+|+++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~---~--~~-~~~~DI~~~~~~~i~--~~~~Dil~   81 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNF---K--EE-VQVKNLDSISIKQIE--SLNCNTWF   81 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHH---C--CC-CBCCCTTTCCHHHHH--HTCCCEEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHC---C--CC-cccCChhhcCHHHhc--cCCCCEEE
Confidence            4589999999999999998864210246 79999999998887765   2  22 567888764322221  23578888


Q ss_pred             EeCCCCch
Q 026219          204 ILCPDPHF  211 (241)
Q Consensus       204 ~~~~~~~~  211 (241)
                      ..+|-+.+
T Consensus        82 ggpPCQ~f   89 (327)
T 3qv2_A           82 MSPPCQPY   89 (327)
T ss_dssp             ECCCCTTC
T ss_pred             ecCCccCc
Confidence            77775433

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.47  E-value=0.13  Score=44.48  Aligned_cols=97  Identities=11%  Similarity=0.041  Sum_probs=61.2

Q ss_pred             CCCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEe
Q 026219          123 PTLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       123 ~~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      .++.+||-+|+  |.|..+..+++.. + .+|+++|.+++..+.+.+   +.|..  .++..+-.+....+.....+.+|
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~-G-a~Vi~~~~~~~~~~~~~~---~~g~~--~~~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLK-G-CRVVGIAGGAEKCRFLVE---ELGFD--GAIDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHH---TTCCS--EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHH---HcCCC--EEEECCCHHHHHHHHHhcCCCce
Confidence            35789999998  5788888888875 4 589999999988777632   23432  22222112222222111235688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++-+..               ...++.+.+.|++||++++
T Consensus       221 ~vi~~~g---------------~~~~~~~~~~l~~~G~iv~  246 (336)
T 4b7c_A          221 VFFDNVG---------------GEILDTVLTRIAFKARIVL  246 (336)
T ss_dssp             EEEESSC---------------HHHHHHHHTTEEEEEEEEE
T ss_pred             EEEECCC---------------cchHHHHHHHHhhCCEEEE
Confidence            7654322               1567888999999999863

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.38  E-value=0.14  Score=44.26  Aligned_cols=96  Identities=8%  Similarity=0.076  Sum_probs=58.6

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .+.+||-+|+  |.|..+..+++.. + .+|+++|.+++.++.++    +.+.. ..+-..|..+....+.....+.+|.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G-~~V~~~~~~~~~~~~~~----~~g~~-~~~d~~~~~~~~~~~~~~~~~~~d~  217 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLK-G-CKVVGAAGSDEKIAYLK----QIGFD-AAFNYKTVNSLEEALKKASPDGYDC  217 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHH----HTTCS-EEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHH----hcCCc-EEEecCCHHHHHHHHHHHhCCCCeE
Confidence            5789999998  5777777777764 4 58999999998877763    23432 1111111111111111111256887


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++-+...               ..++...+.|++||++++
T Consensus       218 vi~~~g~---------------~~~~~~~~~l~~~G~~v~  242 (333)
T 1v3u_A          218 YFDNVGG---------------EFLNTVLSQMKDFGKIAI  242 (333)
T ss_dssp             EEESSCH---------------HHHHHHHTTEEEEEEEEE
T ss_pred             EEECCCh---------------HHHHHHHHHHhcCCEEEE
Confidence            6644321               456788899999998863

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=94.37  E-value=0.043  Score=49.34  Aligned_cols=59  Identities=24%  Similarity=0.351  Sum_probs=40.3

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHC---C---CCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRN---P---DSGNYLGLEIRQKLVKRAEFWVQELALSNIHFL  180 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~---p---~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~  180 (241)
                      ...|..-.|+|+|.|+|.++..+.+..   |   ...+++-||+|+...+.=++++..  ..+++|.
T Consensus        76 ~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~--~~~v~W~  140 (387)
T 1zkd_A           76 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--IRNIHWH  140 (387)
T ss_dssp             TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--CSSEEEE
T ss_pred             cCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC--CCCeEEe
Confidence            444545579999999999988876532   1   225899999999988754444322  2246665

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=94.33  E-value=0.16  Score=44.19  Aligned_cols=95  Identities=12%  Similarity=0.012  Sum_probs=60.8

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC-CCcEe
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY-PGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~-~~~~d  200 (241)
                      ++.+||-+|+  |.|..+..+++.. + .+|+++|.+++.++.+++    .|...  ++..+-.+..+.+.... ...+|
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~-G-~~Vi~~~~~~~~~~~~~~----~ga~~--~~d~~~~~~~~~~~~~~~~~~~d  237 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLF-G-ARVIATAGSEDKLRRAKA----LGADE--TVNYTHPDWPKEVRRLTGGKGAD  237 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHH----HTCSE--EEETTSTTHHHHHHHHTTTTCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHh----cCCCE--EEcCCcccHHHHHHHHhCCCCce
Confidence            4789999998  6888888888875 4 589999999998887753    35432  22211111111111111 23688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+-... +              ..++.+.+.|+++|++++
T Consensus       238 ~vi~~~g-~--------------~~~~~~~~~l~~~G~~v~  263 (343)
T 2eih_A          238 KVVDHTG-A--------------LYFEGVIKATANGGRIAI  263 (343)
T ss_dssp             EEEESSC-S--------------SSHHHHHHHEEEEEEEEE
T ss_pred             EEEECCC-H--------------HHHHHHHHhhccCCEEEE
Confidence            7765543 2              345677889999998863

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.31  E-value=0.19  Score=43.64  Aligned_cols=93  Identities=16%  Similarity=0.167  Sum_probs=61.0

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcccc--chHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS--VSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~--~~~~~~~~~~~~~~d  200 (241)
                      .+.+||-+|+| .|..+..+++.. + .+|+++|.+++.++.+++    .|...  ++  |..  +..+.+.... +.+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~-G-a~Vi~~~~~~~~~~~~~~----lGa~~--~~--d~~~~~~~~~~~~~~-~~~d  232 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAM-G-LNVVAVDIGDEKLELAKE----LGADL--VV--NPLKEDAAKFMKEKV-GGVH  232 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHH----TTCSE--EE--CTTTSCHHHHHHHHH-SSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHH----CCCCE--Ee--cCCCccHHHHHHHHh-CCCC
Confidence            47889999986 588888888875 4 589999999998887653    45431  22  221  1111111101 3588


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+-....+              ..++...+.|++||++++
T Consensus       233 ~vid~~g~~--------------~~~~~~~~~l~~~G~~v~  259 (339)
T 1rjw_A          233 AAVVTAVSK--------------PAFQSAYNSIRRGGACVL  259 (339)
T ss_dssp             EEEESSCCH--------------HHHHHHHHHEEEEEEEEE
T ss_pred             EEEECCCCH--------------HHHHHHHHHhhcCCEEEE
Confidence            776544322              677888999999998863

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=94.29  E-value=0.014  Score=63.92  Aligned_cols=102  Identities=13%  Similarity=0.141  Sum_probs=49.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCC----CcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEe
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPD----SGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~----~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ..+|||||.|+|..+..+.+...+    ...++-.|+|+...+.++++++..   ++..-.-|..+.    .+..+..+|
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---di~~~~~d~~~~----~~~~~~~yd 1313 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---HVTQGQWDPANP----APGSLGKAD 1313 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---TEEEECCCSSCC----CC-----CC
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---cccccccccccc----ccCCCCcee
Confidence            468999999999877666554321    136888999999888888776543   222211122210    000135688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|+.....+-.++.        ...++++.++|||||.+++
T Consensus      1314 lvia~~vl~~t~~~--------~~~l~~~~~lL~p~G~l~~ 1346 (2512)
T 2vz8_A         1314 LLVCNCALATLGDP--------AVAVGNMAATLKEGGFLLL 1346 (2512)
T ss_dssp             EEEEECC----------------------------CCEEEE
T ss_pred             EEEEcccccccccH--------HHHHHHHHHhcCCCcEEEE
Confidence            88765432111111        3788999999999998764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.19  E-value=0.27  Score=43.78  Aligned_cols=102  Identities=13%  Similarity=0.006  Sum_probs=58.5

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC-CcEeE
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~-~~~d~  201 (241)
                      ++.+||=+|+|. |..+..+++...- .+|+++|.+++..+.+++    .|..  .++..+-.+..+.+....+ ..+|.
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~i~~~t~g~g~D~  285 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGA-SKVILSEPSEVRRNLAKE----LGAD--HVIDPTKENFVEAVLDYTNGLGAKL  285 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCHHHHHHHHH----HTCS--EEECTTTSCHHHHHHHHTTTCCCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCC--EEEcCCCCCHHHHHHHHhCCCCCCE
Confidence            467888899874 7888888887643 389999999998888754    4543  2232211122222211112 35787


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+-....+..         ....+++.+.+.+++||++++
T Consensus       286 vid~~g~~~~---------~~~~~~~~l~~~~~~~G~iv~  316 (404)
T 3ip1_A          286 FLEATGVPQL---------VWPQIEEVIWRARGINATVAI  316 (404)
T ss_dssp             EEECSSCHHH---------HHHHHHHHHHHCSCCCCEEEE
T ss_pred             EEECCCCcHH---------HHHHHHHHHHhccCCCcEEEE
Confidence            6644433200         001333333445599999864

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=94.17  E-value=0.072  Score=46.82  Aligned_cols=76  Identities=12%  Similarity=0.036  Sum_probs=53.1

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL  205 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~  205 (241)
                      -+++|+-||.|.+..-+.+..-+.-.+.++|+++.+++.-+.|.     ++..++.+|+.+.....++  ...+|+++..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~-----~~~~~~~~DI~~~~~~~~~--~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF-----PETNLLNRNIQQLTPQVIK--KWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECCCGGGCCHHHHH--HTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC-----CCCceeccccccCCHHHhc--cCCCCEEEec
Confidence            47999999999999999887532024789999999888776543     3445678898764322221  2357888776


Q ss_pred             CCC
Q 026219          206 CPD  208 (241)
Q Consensus       206 ~~~  208 (241)
                      +|-
T Consensus        77 pPC   79 (333)
T 4h0n_A           77 PPC   79 (333)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            664

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.02  E-value=0.098  Score=45.53  Aligned_cols=96  Identities=11%  Similarity=0.099  Sum_probs=59.2

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+||-+|+| .|..+..+++...- .+|+++|.+++.++.+++.     ..  .++..+-.+..+.+.......+|.|
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga-~~Vi~~~~~~~~~~~~~~l-----a~--~v~~~~~~~~~~~~~~~~~~g~D~v  235 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGA-GPILVSDPNPYRLAFARPY-----AD--RLVNPLEEDLLEVVRRVTGSGVEVL  235 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTC-CSEEEECSCHHHHGGGTTT-----CS--EEECTTTSCHHHHHHHHHSSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh-----HH--hccCcCccCHHHHHHHhcCCCCCEE
Confidence            57889999986 37888888887532 2799999999887776431     11  2222111111111110012458877


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +-....+              ..++...+.|++||++++
T Consensus       236 id~~g~~--------------~~~~~~~~~l~~~G~iv~  260 (343)
T 2dq4_A          236 LEFSGNE--------------AAIHQGLMALIPGGEARI  260 (343)
T ss_dssp             EECSCCH--------------HHHHHHHHHEEEEEEEEE
T ss_pred             EECCCCH--------------HHHHHHHHHHhcCCEEEE
Confidence            6444332              677888999999998863

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=93.94  E-value=0.13  Score=45.01  Aligned_cols=91  Identities=13%  Similarity=0.076  Sum_probs=57.8

Q ss_pred             CcEEEEcCC-ccHHH-HHHH-HHCCCCcE-EEEEeCCHH---HHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCc
Q 026219          126 PLMVDIGSG-SGRFL-IWLA-RRNPDSGN-YLGLEIRQK---LVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       126 ~~VLDIGCG-tG~~~-~~la-~~~p~~~~-v~giDis~~---~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      .+||=+|+| .|..+ ..++ +.. + .+ |+++|.+++   ..+.+++    .|.+.+..-..|..+ +...    ++.
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~-G-a~~Vi~~~~~~~~~~~~~~~~~----lGa~~v~~~~~~~~~-i~~~----~gg  242 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK-G-YENLYCLGRRDRPDPTIDIIEE----LDATYVDSRQTPVED-VPDV----YEQ  242 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT-C-CCEEEEEECCCSSCHHHHHHHH----TTCEEEETTTSCGGG-HHHH----SCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc-C-CcEEEEEeCCcccHHHHHHHHH----cCCcccCCCccCHHH-HHHh----CCC
Confidence            789999986 47778 8888 654 3 45 999999988   7777643    454322000012222 2222    236


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|+-....+              ..++.+.+.|++||++++
T Consensus       243 ~Dvvid~~g~~--------------~~~~~~~~~l~~~G~iv~  271 (357)
T 2b5w_A          243 MDFIYEATGFP--------------KHAIQSVQALAPNGVGAL  271 (357)
T ss_dssp             EEEEEECSCCH--------------HHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEECCCCh--------------HHHHHHHHHHhcCCEEEE
Confidence            88766443322              578889999999998863

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.81  E-value=0.13  Score=44.76  Aligned_cols=94  Identities=14%  Similarity=0.130  Sum_probs=60.1

Q ss_pred             CCCcEEEE-cCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDI-GSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDI-GCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+||=+ |+| .|..+..+++.. + .+|+++|.+++.++.+++    .|.+.  ++..+ .+..+.+.......+|.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~-G-a~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~-~~~~~~~~~~~~~g~Dv  220 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY-G-LRVITTASRNETIEWTKK----MGADI--VLNHK-ESLLNQFKTQGIELVDY  220 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEECCSHHHHHHHHH----HTCSE--EECTT-SCHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHh----cCCcE--EEECC-ccHHHHHHHhCCCCccE
Confidence            46789988 455 688888888865 4 589999999998887765    35432  22111 11111211112346887


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |+-....              ...++.+.+.|++||+++
T Consensus       221 v~d~~g~--------------~~~~~~~~~~l~~~G~iv  245 (346)
T 3fbg_A          221 VFCTFNT--------------DMYYDDMIQLVKPRGHIA  245 (346)
T ss_dssp             EEESSCH--------------HHHHHHHHHHEEEEEEEE
T ss_pred             EEECCCc--------------hHHHHHHHHHhccCCEEE
Confidence            6543322              267788999999999985

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=93.58  E-value=0.084  Score=46.32  Aligned_cols=92  Identities=8%  Similarity=0.034  Sum_probs=59.4

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcccc-chHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS-VSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~-~~~~~~~~~~~~~~d~  201 (241)
                      .+.+||-+|+| .|..+..+++.. + .+|+++|.+++.++.+++    .|...  ++..+-. +....+    .+.+|.
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~-G-a~Vi~~~~~~~~~~~~~~----lGa~~--v~~~~~~~~~~~~~----~~~~D~  246 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAM-G-AETYVISRSSRKREDAMK----MGADH--YIATLEEGDWGEKY----FDTFDL  246 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-T-CEEEEEESSSTTHHHHHH----HTCSE--EEEGGGTSCHHHHS----CSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-C-CEEEEEcCCHHHHHHHHH----cCCCE--EEcCcCchHHHHHh----hcCCCE
Confidence            47899999987 478888888865 3 579999999988887754    45432  2322111 222221    146887


Q ss_pred             EEEeCCC--CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPD--PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~--~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+-....  +              ..++.+.+.|++||++++
T Consensus       247 vid~~g~~~~--------------~~~~~~~~~l~~~G~iv~  274 (360)
T 1piw_A          247 IVVCASSLTD--------------IDFNIMPKAMKVGGRIVS  274 (360)
T ss_dssp             EEECCSCSTT--------------CCTTTGGGGEEEEEEEEE
T ss_pred             EEECCCCCcH--------------HHHHHHHHHhcCCCEEEE
Confidence            7655443  2              234456889999998863

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.58  E-value=0.13  Score=44.69  Aligned_cols=96  Identities=9%  Similarity=0.017  Sum_probs=59.0

Q ss_pred             CCCCcEEEEcCC--ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcE
Q 026219          123 PTLPLMVDIGSG--SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPL  199 (241)
Q Consensus       123 ~~~~~VLDIGCG--tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~  199 (241)
                      .++.+||-+|+|  .|..+..+++.. + .+|+++|.+++.++.+++    .|..  .++..+-.+..+.+... ....+
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-G-a~Vi~~~~~~~~~~~~~~----lga~--~~~~~~~~~~~~~~~~~~~~~g~  214 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQIL-N-FRLIAVTRNNKHTEELLR----LGAA--YVIDTSTAPLYETVMELTNGIGA  214 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHH-T-CEEEEEESSSTTHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHh----CCCc--EEEeCCcccHHHHHHHHhCCCCC
Confidence            357899999987  678888888865 4 689999999988887764    3543  22222111222221111 12468


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|+-....               ..+....+.|++||++++
T Consensus       215 Dvvid~~g~---------------~~~~~~~~~l~~~G~iv~  241 (340)
T 3gms_A          215 DAAIDSIGG---------------PDGNELAFSLRPNGHFLT  241 (340)
T ss_dssp             EEEEESSCH---------------HHHHHHHHTEEEEEEEEE
T ss_pred             cEEEECCCC---------------hhHHHHHHHhcCCCEEEE
Confidence            876644332               223344589999999863

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.46  E-value=0.057  Score=46.36  Aligned_cols=64  Identities=14%  Similarity=0.149  Sum_probs=40.2

Q ss_pred             CCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhh------------hhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKK------------KHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       175 ~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~------------~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+++++++|+.+.+..+   ++++||+|+.+.|-.....            .+.........+++++.++|||||.+++
T Consensus        20 ~~~~i~~gD~~~~l~~l---~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i   95 (297)
T 2zig_A           20 GVHRLHVGDAREVLASF---PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVI   95 (297)
T ss_dssp             -CEEEEESCHHHHHTTS---CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCEEEECcHHHHHhhC---CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence            46789999998744332   3689999988765311100            0000011234678899999999999875

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.24  E-value=0.48  Score=41.51  Aligned_cols=96  Identities=15%  Similarity=0.153  Sum_probs=61.3

Q ss_pred             CCCCcEEEEc--CCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEe
Q 026219          123 PTLPLMVDIG--SGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       123 ~~~~~VLDIG--CGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ..+.+||=+|  .|.|..+..+++.. + .+|+++|.+++.++.+++    .|..  .++..+-.+..+.+.......+|
T Consensus       162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~-G-a~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~~~~~~~~g~D  233 (362)
T 2c0c_A          162 SEGKKVLVTAAAGGTGQFAMQLSKKA-K-CHVIGTCSSDEKSAFLKS----LGCD--RPINYKTEPVGTVLKQEYPEGVD  233 (362)
T ss_dssp             CTTCEEEETTTTBTTHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhC-C-CEEEEEECCHHHHHHHHH----cCCc--EEEecCChhHHHHHHHhcCCCCC
Confidence            3578999999  45889999999876 4 589999999988877654    4543  22322211111111111134688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+-... .              ..++.+.+.|++||++++
T Consensus       234 ~vid~~g-~--------------~~~~~~~~~l~~~G~iv~  259 (362)
T 2c0c_A          234 VVYESVG-G--------------AMFDLAVDALATKGRLIV  259 (362)
T ss_dssp             EEEECSC-T--------------HHHHHHHHHEEEEEEEEE
T ss_pred             EEEECCC-H--------------HHHHHHHHHHhcCCEEEE
Confidence            7664432 1              567778899999998863

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=92.87  E-value=0.35  Score=41.85  Aligned_cols=93  Identities=10%  Similarity=0.091  Sum_probs=60.0

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE-c---cccchHHhhccCCCC
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF-A---NASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~-~---D~~~~~~~~~~~~~~  197 (241)
                      ++.+||-+|+  |.|..+..+++.. + .+|+++|.+++.++.+++   +.|..  ..+. .   |..+.+....   ..
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~-G-~~V~~~~~~~~~~~~~~~---~~g~~--~~~d~~~~~~~~~~~~~~~---~~  224 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMM-G-CYVVGSAGSKEKVDLLKT---KFGFD--DAFNYKEESDLTAALKRCF---PN  224 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHH---TSCCS--EEEETTSCSCSHHHHHHHC---TT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHH---HcCCc--eEEecCCHHHHHHHHHHHh---CC
Confidence            5789999997  5788888888875 4 589999999988777653   23432  1222 1   1212222221   24


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+|.++-...               ...++...+.|++||++++
T Consensus       225 ~~d~vi~~~g---------------~~~~~~~~~~l~~~G~~v~  253 (345)
T 2j3h_A          225 GIDIYFENVG---------------GKMLDAVLVNMNMHGRIAV  253 (345)
T ss_dssp             CEEEEEESSC---------------HHHHHHHHTTEEEEEEEEE
T ss_pred             CCcEEEECCC---------------HHHHHHHHHHHhcCCEEEE
Confidence            6887654432               1567788999999998863

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=92.81  E-value=0.26  Score=42.87  Aligned_cols=94  Identities=14%  Similarity=0.111  Sum_probs=60.1

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC-CcEe
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLM  200 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~-~~~d  200 (241)
                      .+.+||=+|+  |.|..+..+++.. + .+|++++.+++..+.+++    .|..  .++..+ .+..+.+....+ ..+|
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~-G-a~Vi~~~~~~~~~~~~~~----~ga~--~v~~~~-~~~~~~v~~~~~~~g~D  229 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGM-G-AKVIAVVNRTAATEFVKS----VGAD--IVLPLE-EGWAKAVREATGGAGVD  229 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-T-CEEEEEESSGGGHHHHHH----HTCS--EEEESS-TTHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHh----cCCc--EEecCc-hhHHHHHHHHhCCCCce
Confidence            5789999997  4688888888875 4 589999999988877654    3543  223333 222222211112 3688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+-....               ..++...+.|++||++++
T Consensus       230 vvid~~g~---------------~~~~~~~~~l~~~G~iv~  255 (342)
T 4eye_A          230 MVVDPIGG---------------PAFDDAVRTLASEGRLLV  255 (342)
T ss_dssp             EEEESCC-----------------CHHHHHHTEEEEEEEEE
T ss_pred             EEEECCch---------------hHHHHHHHhhcCCCEEEE
Confidence            76644332               345667889999998863

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.33  E-value=0.34  Score=41.61  Aligned_cols=95  Identities=11%  Similarity=-0.050  Sum_probs=59.1

Q ss_pred             CCCcEEEEc--CCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEe
Q 026219          124 TLPLMVDIG--SGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIG--CGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d  200 (241)
                      .+.+||-+|  .|.|..+..+++.. + .+|+++|.+++..+.+++    .+..  ..+..+-.+..+.+... ....+|
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~-G-~~V~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~~D  211 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKAL-G-AKLIGTVGTAQKAQSALK----AGAW--QVINYREEDLVERLKEITGGKKVR  211 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHH-T-CEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHH----cCCC--EEEECCCccHHHHHHHHhCCCCce
Confidence            578899999  45677777777764 4 589999999988877754    3432  12221111222222111 123588


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++-+.. +              ..++.+.+.|++||++++
T Consensus       212 ~vi~~~g-~--------------~~~~~~~~~l~~~G~iv~  237 (327)
T 1qor_A          212 VVYDSVG-R--------------DTWERSLDCLQRRGLMVS  237 (327)
T ss_dssp             EEEECSC-G--------------GGHHHHHHTEEEEEEEEE
T ss_pred             EEEECCc-h--------------HHHHHHHHHhcCCCEEEE
Confidence            7765543 2              556778899999998863

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=92.25  E-value=0.21  Score=43.82  Aligned_cols=91  Identities=14%  Similarity=0.071  Sum_probs=57.3

Q ss_pred             CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCH---HHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEe
Q 026219          125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQ---KLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~---~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      +.+||=+|+| .|..+..+++.. + .+|+++|.++   +..+.+++    .|...+.  ..|..+.+.. .   ...+|
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~-G-a~Vi~~~~~~~~~~~~~~~~~----~ga~~v~--~~~~~~~~~~-~---~~~~d  248 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY-G-LEVWMANRREPTEVEQTVIEE----TKTNYYN--SSNGYDKLKD-S---VGKFD  248 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH-T-CEEEEEESSCCCHHHHHHHHH----HTCEEEE--CTTCSHHHHH-H---HCCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-CEEEEEeCCccchHHHHHHHH----hCCceec--hHHHHHHHHH-h---CCCCC
Confidence            7899999985 366667777754 4 5899999998   76666543    3543221  1122221111 1   24688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHH-HHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLV-DSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll-~~l~r~LkpGG~l~~  241 (241)
                      .|+-....+              ..+ +...+.|++||++++
T Consensus       249 ~vid~~g~~--------------~~~~~~~~~~l~~~G~iv~  276 (366)
T 2cdc_A          249 VIIDATGAD--------------VNILGNVIPLLGRNGVLGL  276 (366)
T ss_dssp             EEEECCCCC--------------THHHHHHGGGEEEEEEEEE
T ss_pred             EEEECCCCh--------------HHHHHHHHHHHhcCCEEEE
Confidence            776554433              455 888999999998863

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=92.08  E-value=0.56  Score=40.78  Aligned_cols=96  Identities=13%  Similarity=0.025  Sum_probs=58.4

Q ss_pred             CC--CcEEEEcC--CccHHHHHHHHHCCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCc
Q 026219          124 TL--PLMVDIGS--GSGRFLIWLARRNPDSG-NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       124 ~~--~~VLDIGC--GtG~~~~~la~~~p~~~-~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      .+  .+||=.|+  |.|..+..+++.. + . +|+++|.+++..+.+++.   .|..  ..+..+-.+....+.....+.
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~-G-a~~Vi~~~~~~~~~~~~~~~---~g~~--~~~d~~~~~~~~~~~~~~~~~  230 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFL-G-CSRVVGICGTHEKCILLTSE---LGFD--AAINYKKDNVAEQLRESCPAG  230 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHT---SCCS--EEEETTTSCHHHHHHHHCTTC
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHC-C-CCeEEEEeCCHHHHHHHHHH---cCCc--eEEecCchHHHHHHHHhcCCC
Confidence            46  88999997  4677777777765 3 5 899999998877766431   3432  222211111111111111236


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.++-+.. .              ..++...+.|++||++++
T Consensus       231 ~d~vi~~~G-~--------------~~~~~~~~~l~~~G~iv~  258 (357)
T 2zb4_A          231 VDVYFDNVG-G--------------NISDTVISQMNENSHIIL  258 (357)
T ss_dssp             EEEEEESCC-H--------------HHHHHHHHTEEEEEEEEE
T ss_pred             CCEEEECCC-H--------------HHHHHHHHHhccCcEEEE
Confidence            887654432 1              567788999999999863

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.83  E-value=1.7  Score=32.14  Aligned_cols=72  Identities=17%  Similarity=0.040  Sum_probs=44.8

Q ss_pred             CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .+|+=+|+|  .++..+++..  .+ .+|+++|.+++.++.+++       ..+.++.+|+.+.- .+........|.|+
T Consensus         7 ~~v~I~G~G--~iG~~la~~L~~~g-~~V~~id~~~~~~~~~~~-------~~~~~~~gd~~~~~-~l~~~~~~~~d~vi   75 (141)
T 3llv_A            7 YEYIVIGSE--AAGVGLVRELTAAG-KKVLAVDKSKEKIELLED-------EGFDAVIADPTDES-FYRSLDLEGVSAVL   75 (141)
T ss_dssp             CSEEEECCS--HHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHH-------TTCEEEECCTTCHH-HHHHSCCTTCSEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHH-------CCCcEEECCCCCHH-HHHhCCcccCCEEE
Confidence            568888885  4555554432  23 579999999988776643       24678889987631 11111124578777


Q ss_pred             EeCCC
Q 026219          204 ILCPD  208 (241)
Q Consensus       204 ~~~~~  208 (241)
                      +..++
T Consensus        76 ~~~~~   80 (141)
T 3llv_A           76 ITGSD   80 (141)
T ss_dssp             ECCSC
T ss_pred             EecCC
Confidence            76654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.62  E-value=1.5  Score=33.99  Aligned_cols=73  Identities=18%  Similarity=0.154  Sum_probs=42.2

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC--C-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEe
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN--P-DSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLM  200 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~--p-~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d  200 (241)
                      +.+|+=+|+|  ..+..+++..  . + ..|+++|.+++.++.+++    .   ++.++.+|..+. +.+... .-...|
T Consensus        39 ~~~v~IiG~G--~~G~~~a~~L~~~~g-~~V~vid~~~~~~~~~~~----~---g~~~~~gd~~~~-~~l~~~~~~~~ad  107 (183)
T 3c85_A           39 HAQVLILGMG--RIGTGAYDELRARYG-KISLGIEIREEAAQQHRS----E---GRNVISGDATDP-DFWERILDTGHVK  107 (183)
T ss_dssp             TCSEEEECCS--HHHHHHHHHHHHHHC-SCEEEEESCHHHHHHHHH----T---TCCEEECCTTCH-HHHHTBCSCCCCC
T ss_pred             CCcEEEECCC--HHHHHHHHHHHhccC-CeEEEEECCHHHHHHHHH----C---CCCEEEcCCCCH-HHHHhccCCCCCC
Confidence            4578888875  4444433322  1 3 469999999987766532    2   345677887642 111111 123468


Q ss_pred             EEEEeCCC
Q 026219          201 LVSILCPD  208 (241)
Q Consensus       201 ~V~~~~~~  208 (241)
                      .|++..++
T Consensus       108 ~vi~~~~~  115 (183)
T 3c85_A          108 LVLLAMPH  115 (183)
T ss_dssp             EEEECCSS
T ss_pred             EEEEeCCC
Confidence            77776654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=91.37  E-value=0.17  Score=44.06  Aligned_cols=64  Identities=16%  Similarity=0.116  Sum_probs=41.2

Q ss_pred             CCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhh------hhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKK------KHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       175 ~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~------~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+..++++|+.+.+..+   +++++|+|++..|-.....      .+..........++++.++|+|||.+++
T Consensus        13 ~~~~ii~gD~~~~l~~l---~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i   82 (323)
T 1boo_A           13 SNGSMYIGDSLELLESF---PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVV   82 (323)
T ss_dssp             SSEEEEESCHHHHGGGS---CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhC---CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEE
Confidence            35789999998754332   4688999988754311100      0001111345889999999999999875

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=91.32  E-value=0.4  Score=41.86  Aligned_cols=95  Identities=13%  Similarity=0.049  Sum_probs=58.6

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEe
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d  200 (241)
                      ++.+||-+|+  |.|..+..+++.. + .+|+++|.+++.++.++    +.+..  .++..+-.+....+... ....+|
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~-G-a~Vi~~~~~~~~~~~~~----~~ga~--~~~d~~~~~~~~~~~~~~~~~~~D  241 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAY-G-LKILGTAGTEEGQKIVL----QNGAH--EVFNHREVNYIDKIKKYVGEKGID  241 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHH----HTTCS--EEEETTSTTHHHHHHHHHCTTCEE
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHC-C-CEEEEEeCChhHHHHHH----HcCCC--EEEeCCCchHHHHHHHHcCCCCcE
Confidence            4688999997  5677888888765 4 68999999998877654    33432  22222111211111111 123688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++-...               ...++...+.|++||++++
T Consensus       242 ~vi~~~G---------------~~~~~~~~~~l~~~G~iv~  267 (351)
T 1yb5_A          242 IIIEMLA---------------NVNLSKDLSLLSHGGRVIV  267 (351)
T ss_dssp             EEEESCH---------------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEEECCC---------------hHHHHHHHHhccCCCEEEE
Confidence            7654422               1456678899999998863

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=91.30  E-value=0.99  Score=36.93  Aligned_cols=59  Identities=12%  Similarity=-0.000  Sum_probs=42.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC---CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN---PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~---p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      +.+||=.| |+|.++..+++.+   .+ .+|+.++.++...+...+.++..+ .++.++.+|+.+
T Consensus         4 ~k~vlITG-asggIG~~~a~~L~~~~g-~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~   65 (276)
T 1wma_A            4 IHVALVTG-GNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDD   65 (276)
T ss_dssp             CCEEEESS-CSSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTC
T ss_pred             CCEEEEeC-CCcHHHHHHHHHHHHhcC-CeEEEEeCChHHHHHHHHHHHhcC-CeeEEEECCCCC
Confidence            46677667 5676776666543   24 689999999887777666665544 468899999976

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=91.22  E-value=0.49  Score=40.68  Aligned_cols=95  Identities=13%  Similarity=0.005  Sum_probs=59.6

Q ss_pred             CCCcEEEEc-C-CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEe
Q 026219          124 TLPLMVDIG-S-GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIG-C-GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d  200 (241)
                      ++.+||=+| + |.|..+..+++.. + .+|+++|.+++.++.+++    .|..  ..+..+-.+..+.+... ....+|
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~-G-a~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~~~~~~~~~g~D  211 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKAL-G-AKLIGTVSSPEKAAHAKA----LGAW--ETIDYSHEDVAKRVLELTDGKKCP  211 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHH-T-CEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHH----cCCC--EEEeCCCccHHHHHHHHhCCCCce
Confidence            478899998 3 4688888888864 4 589999999998887754    3532  22322212222222111 124688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+-....               ..++...+.|++||++++
T Consensus       212 vvid~~g~---------------~~~~~~~~~l~~~G~iv~  237 (325)
T 3jyn_A          212 VVYDGVGQ---------------DTWLTSLDSVAPRGLVVS  237 (325)
T ss_dssp             EEEESSCG---------------GGHHHHHTTEEEEEEEEE
T ss_pred             EEEECCCh---------------HHHHHHHHHhcCCCEEEE
Confidence            76544321               345678899999999863

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.18  E-value=1  Score=40.62  Aligned_cols=95  Identities=12%  Similarity=0.102  Sum_probs=55.6

Q ss_pred             CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...|+=+|+| .|.......... + ..|++||.+++.++.+++    .   .+.++.+|+++. +.+....-...|.|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~-g-~~vvvId~d~~~v~~~~~----~---g~~vi~GDat~~-~~L~~agi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSS-G-VKMVVLDHDPDHIETLRK----F---GMKVFYGDATRM-DLLESAGAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-T-CCEEEEECCHHHHHHHHH----T---TCCCEESCTTCH-HHHHHTTTTTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-C-CCEEEEECCHHHHHHHHh----C---CCeEEEcCCCCH-HHHHhcCCCccCEEE
Confidence            3567777775 243333333332 3 579999999999888753    2   456889999863 111111124567777


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +..+++..           ...+-...+.+.|+..++
T Consensus        74 v~~~~~~~-----------n~~i~~~ar~~~p~~~Ii   99 (413)
T 3l9w_A           74 NAIDDPQT-----------NLQLTEMVKEHFPHLQII   99 (413)
T ss_dssp             ECCSSHHH-----------HHHHHHHHHHHCTTCEEE
T ss_pred             ECCCChHH-----------HHHHHHHHHHhCCCCeEE
Confidence            77665311           244444555666766554

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=91.00  E-value=0.46  Score=40.91  Aligned_cols=69  Identities=13%  Similarity=-0.040  Sum_probs=48.8

Q ss_pred             cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeC
Q 026219          127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC  206 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~  206 (241)
                      +|||+-||.|.+..-+.+..=  -.+.++|+++.+++.-+.|.     + -.++.+|+.+.....+    ..+|+++..+
T Consensus         2 kvidLFsG~GG~~~G~~~aG~--~~v~a~e~d~~a~~ty~~N~-----~-~~~~~~DI~~i~~~~~----~~~D~l~ggp   69 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNH-----S-AKLIKGDISKISSDEF----PKCDGIIGGP   69 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTC--EEEEEEECCTTTHHHHHHHC-----C-SEEEESCGGGCCGGGS----CCCSEEECCC
T ss_pred             eEEEeCcCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHC-----C-CCcccCChhhCCHhhC----CcccEEEecC
Confidence            589999999999998877632  25789999999888766542     2 3578899986322211    3478776555


Q ss_pred             C
Q 026219          207 P  207 (241)
Q Consensus       207 ~  207 (241)
                      |
T Consensus        70 P   70 (331)
T 3ubt_Y           70 P   70 (331)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=90.80  E-value=2.1  Score=37.89  Aligned_cols=94  Identities=11%  Similarity=0.079  Sum_probs=66.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC--EEEEEccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN--IHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n--i~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +..||.|+-+.|.++..++..  .   ++.+.-|--.-...+.|++.+++++  +++...  .       +..+..+|.|
T Consensus        39 ~~~~~~~~d~~gal~~~~~~~--~---~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~-------~~~~~~~~~v  104 (375)
T 4dcm_A           39 RGPVLILNDAFGALSCALAEH--K---PYSIGDSYISELATRENLRLNGIDESSVKFLDS--T-------ADYPQQPGVV  104 (375)
T ss_dssp             CSCEEEECCSSSHHHHHTGGG--C---CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--T-------SCCCSSCSEE
T ss_pred             CCCEEEECCCCCHHHHhhccC--C---ceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--c-------cccccCCCEE
Confidence            467999999999999998754  2   4455446666677888898888853  555432  1       1235778988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..|....         .....|..+...|+||+.+++
T Consensus       105 ~~~lpk~~~---------~l~~~L~~l~~~l~~~~~i~~  134 (375)
T 4dcm_A          105 LIKVPKTLA---------LLEQQLRALRKVVTSDTRIIA  134 (375)
T ss_dssp             EEECCSCHH---------HHHHHHHHHHTTCCTTSEEEE
T ss_pred             EEEcCCCHH---------HHHHHHHHHHhhCCCCCEEEE
Confidence            888764321         225788889999999998863

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=90.63  E-value=0.66  Score=40.65  Aligned_cols=92  Identities=13%  Similarity=0.096  Sum_probs=56.6

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+.+||=+|+| .|..+..+++.. + .+|+++|.+++..+.+++   +.|..  .++..+-.+.+...    .+.+|.|
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~-G-a~Vi~~~~~~~~~~~~~~---~lGa~--~v~~~~~~~~~~~~----~~~~D~v  255 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAF-G-SKVTVISTSPSKKEEALK---NFGAD--SFLVSRDQEQMQAA----AGTLDGI  255 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCGGGHHHHHH---TSCCS--EEEETTCHHHHHHT----TTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHH---hcCCc--eEEeccCHHHHHHh----hCCCCEE
Confidence            46788889987 477778888875 4 589999999987776642   23432  22221111112121    1358877


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +-....+              ..++...+.|++||+++
T Consensus       256 id~~g~~--------------~~~~~~~~~l~~~G~iv  279 (366)
T 1yqd_A          256 IDTVSAV--------------HPLLPLFGLLKSHGKLI  279 (366)
T ss_dssp             EECCSSC--------------CCSHHHHHHEEEEEEEE
T ss_pred             EECCCcH--------------HHHHHHHHHHhcCCEEE
Confidence            6554432              22345678889999876

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=90.56  E-value=0.73  Score=40.14  Aligned_cols=95  Identities=15%  Similarity=-0.005  Sum_probs=58.2

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC-CCcEe
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY-PGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~-~~~~d  200 (241)
                      ++.+||-+|+  |.|..+..+++.. + .+|+++|.+++.++.+++    .|..  ..+..+-.+..+.+.... ...+|
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~-G-a~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~~d  233 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMA-G-AIPLVTAGSQKKLQMAEK----LGAA--AGFNYKKEDFSEATLKFTKGAGVN  233 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHH----cCCc--EEEecCChHHHHHHHHHhcCCCce
Confidence            4688999984  5777888888765 4 689999999988877743    3432  222221112222221111 23588


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++-+...               ..++...+.|++||++++
T Consensus       234 ~vi~~~G~---------------~~~~~~~~~l~~~G~iv~  259 (354)
T 2j8z_A          234 LILDCIGG---------------SYWEKNVNCLALDGRWVL  259 (354)
T ss_dssp             EEEESSCG---------------GGHHHHHHHEEEEEEEEE
T ss_pred             EEEECCCc---------------hHHHHHHHhccCCCEEEE
Confidence            77644332               235567888999998863

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=90.34  E-value=0.16  Score=42.56  Aligned_cols=62  Identities=19%  Similarity=0.156  Sum_probs=39.9

Q ss_pred             EEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhh------hhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          177 IHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKK------KHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       177 i~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~------~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+++++|+.+.+..+   +++++|+|++..|-.....      .+.+........++++.++|+|||.+++
T Consensus         5 ~~l~~gD~~~~l~~l---~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v   72 (260)
T 1g60_A            5 NKIHQMNCFDFLDQV---ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYI   72 (260)
T ss_dssp             SSEEECCHHHHHHHS---CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CeEEechHHHHHHhc---cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            467899998765543   3678999988765321100      0001111346788899999999999875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=90.28  E-value=1.3  Score=38.74  Aligned_cols=96  Identities=7%  Similarity=-0.063  Sum_probs=59.8

Q ss_pred             CCCCcEEEEcC-C-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEe
Q 026219          123 PTLPLMVDIGS-G-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       123 ~~~~~VLDIGC-G-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      .++.+||=+|+ | .|..+..+++.. + .+|+++. +++..+.++    +.|..  .++...-.+..+.+....++.+|
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-G-a~Vi~~~-~~~~~~~~~----~lGa~--~vi~~~~~~~~~~v~~~t~g~~d  233 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS-G-YIPIATC-SPHNFDLAK----SRGAE--EVFDYRAPNLAQTIRTYTKNNLR  233 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT-T-CEEEEEE-CGGGHHHHH----HTTCS--EEEETTSTTHHHHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEe-CHHHHHHHH----HcCCc--EEEECCCchHHHHHHHHccCCcc
Confidence            35788999998 3 789999999875 4 5899885 887776654    34543  23322222222222111234588


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhcc-ccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYL-MPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~L-kpGG~l~~  241 (241)
                      .|+-....+              ..++...+.| ++||++++
T Consensus       234 ~v~d~~g~~--------------~~~~~~~~~l~~~~G~iv~  261 (371)
T 3gqv_A          234 YALDCITNV--------------ESTTFCFAAIGRAGGHYVS  261 (371)
T ss_dssp             EEEESSCSH--------------HHHHHHHHHSCTTCEEEEE
T ss_pred             EEEECCCch--------------HHHHHHHHHhhcCCCEEEE
Confidence            766443332              6777888888 69998863

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=90.24  E-value=0.62  Score=40.10  Aligned_cols=96  Identities=10%  Similarity=0.009  Sum_probs=59.8

Q ss_pred             CCCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcE
Q 026219          123 PTLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPL  199 (241)
Q Consensus       123 ~~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~  199 (241)
                      .++.+||=+|+  |.|..+..+++.. + .+|+++|.+++.++.+++    .|..  .++..+-.+....+... ....+
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~-G-a~Vi~~~~~~~~~~~~~~----~ga~--~~~~~~~~~~~~~~~~~~~~~g~  218 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMK-G-AHTIAVASTDEKLKIAKE----YGAE--YLINASKEDILRQVLKFTNGKGV  218 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHH----cCCc--EEEeCCCchHHHHHHHHhCCCCc
Confidence            35789999994  4678888888875 4 689999999998877654    3532  22322212222222111 13458


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.|+-....               ..++...+.|++||++++
T Consensus       219 D~vid~~g~---------------~~~~~~~~~l~~~G~iv~  245 (334)
T 3qwb_A          219 DASFDSVGK---------------DTFEISLAALKRKGVFVS  245 (334)
T ss_dssp             EEEEECCGG---------------GGHHHHHHHEEEEEEEEE
T ss_pred             eEEEECCCh---------------HHHHHHHHHhccCCEEEE
Confidence            876544321               456677889999998863

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=90.16  E-value=0.68  Score=40.33  Aligned_cols=95  Identities=13%  Similarity=0.004  Sum_probs=58.8

Q ss_pred             CCCcEEEEc-C-CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIG-S-GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIG-C-GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .+.+||=+| + |.|..+..+++.. + .+|+++|.+++.++.+++    .|..  .++..+-.+....+.......+|.
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~-G-a~Vi~~~~~~~~~~~~~~----lGa~--~~~~~~~~~~~~~~~~~~~~g~Dv  238 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAF-G-AEVYATAGSTGKCEACER----LGAK--RGINYRSEDFAAVIKAETGQGVDI  238 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHHSSCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHh----cCCC--EEEeCCchHHHHHHHHHhCCCceE
Confidence            468899984 3 3688888888875 4 589999999998887754    3543  223222222111111111346887


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++-....               ..++...+.|++||++++
T Consensus       239 vid~~g~---------------~~~~~~~~~l~~~G~iv~  263 (353)
T 4dup_A          239 ILDMIGA---------------AYFERNIASLAKDGCLSI  263 (353)
T ss_dssp             EEESCCG---------------GGHHHHHHTEEEEEEEEE
T ss_pred             EEECCCH---------------HHHHHHHHHhccCCEEEE
Confidence            6544332               345667889999998863

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=90.15  E-value=0.59  Score=40.21  Aligned_cols=95  Identities=14%  Similarity=0.055  Sum_probs=59.0

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEe
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d  200 (241)
                      ++.+||-+|+  |.|..+..+++.. + .+|+++|.+++.++.+++    .+..  ..+..+-.+..+.+... ....+|
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~-G-~~Vi~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~i~~~~~~~~~d  216 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHL-G-ATVIGTVSTEEKAETARK----LGCH--HTINYSTQDFAEVVREITGGKGVD  216 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHH----cCCC--EEEECCCHHHHHHHHHHhCCCCCe
Confidence            4688999995  6788888888875 4 589999999988777654    3432  12221111111111110 123588


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++-+...               ..++.+.+.|++||++++
T Consensus       217 ~vi~~~g~---------------~~~~~~~~~l~~~G~iv~  242 (333)
T 1wly_A          217 VVYDSIGK---------------DTLQKSLDCLRPRGMCAA  242 (333)
T ss_dssp             EEEECSCT---------------TTHHHHHHTEEEEEEEEE
T ss_pred             EEEECCcH---------------HHHHHHHHhhccCCEEEE
Confidence            77644332               345677899999998863

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=90.11  E-value=0.44  Score=41.65  Aligned_cols=93  Identities=15%  Similarity=0.153  Sum_probs=57.4

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+||=+|+| .|..+..+++.. + .+|+++|.+++..+.+++   +.|.+.  ++..+-.+.+...    .+.+|.|
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~-G-a~Vi~~~~~~~~~~~~~~---~lGa~~--vi~~~~~~~~~~~----~~g~D~v  248 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAM-G-HHVTVISSSNKKREEALQ---DLGADD--YVIGSDQAKMSEL----ADSLDYV  248 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-T-CEEEEEESSTTHHHHHHT---TSCCSC--EEETTCHHHHHHS----TTTEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-C-CeEEEEeCChHHHHHHHH---HcCCce--eeccccHHHHHHh----cCCCCEE
Confidence            47889999987 577788888865 4 589999999987776642   234432  2221111111111    2358877


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +-....+              ..++...+.|++||++++
T Consensus       249 id~~g~~--------------~~~~~~~~~l~~~G~iv~  273 (357)
T 2cf5_A          249 IDTVPVH--------------HALEPYLSLLKLDGKLIL  273 (357)
T ss_dssp             EECCCSC--------------CCSHHHHTTEEEEEEEEE
T ss_pred             EECCCCh--------------HHHHHHHHHhccCCEEEE
Confidence            6444332              234556789999998863

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=89.90  E-value=0.68  Score=39.25  Aligned_cols=88  Identities=17%  Similarity=0.073  Sum_probs=57.4

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccc-cchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANA-SVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~-~~~~~~~~~~~~~~~d  200 (241)
                      ++.+||-+|+  |.|..+..+++.. + .+|+++|.+++..+.+++    .|...  ++..+- .+..+. .    ..+|
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~-G-a~Vi~~~~~~~~~~~~~~----~ga~~--~~~~~~~~~~~~~-~----~~~d  191 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAM-G-LRVLAAASRPEKLALPLA----LGAEE--AATYAEVPERAKA-W----GGLD  191 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHT-T-CEEEEEESSGGGSHHHHH----TTCSE--EEEGGGHHHHHHH-T----TSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHh----cCCCE--EEECCcchhHHHH-h----cCce
Confidence            4789999998  4688888888875 4 589999999988777643    45432  222111 111111 1    4588


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .|+- ...               ..++...+.|++||+++
T Consensus       192 ~vid-~g~---------------~~~~~~~~~l~~~G~~v  215 (302)
T 1iz0_A          192 LVLE-VRG---------------KEVEESLGLLAHGGRLV  215 (302)
T ss_dssp             EEEE-CSC---------------TTHHHHHTTEEEEEEEE
T ss_pred             EEEE-CCH---------------HHHHHHHHhhccCCEEE
Confidence            7665 332               34566788999999876

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=89.01  E-value=0.84  Score=39.54  Aligned_cols=92  Identities=14%  Similarity=0.041  Sum_probs=58.0

Q ss_pred             CCCcEEEEcC-C-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEe
Q 026219          124 TLPLMVDIGS-G-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGC-G-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d  200 (241)
                      .+.+||=+|+ | .|..+..+++.. + .+|+++ .+++.++.+++    .|...   +. +-.+..+.+... ....+|
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~-G-a~Vi~~-~~~~~~~~~~~----lGa~~---i~-~~~~~~~~~~~~~~~~g~D  218 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALAR-G-ARVFAT-ARGSDLEYVRD----LGATP---ID-ASREPEDYAAEHTAGQGFD  218 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEE-ECHHHHHHHHH----HTSEE---EE-TTSCHHHHHHHHHTTSCEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHC-C-CEEEEE-eCHHHHHHHHH----cCCCE---ec-cCCCHHHHHHHHhcCCCce
Confidence            5789999994 3 688888888875 4 589999 88887776643    45432   22 222221111111 124688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+-... .              ..++...+.|++||++++
T Consensus       219 ~vid~~g-~--------------~~~~~~~~~l~~~G~iv~  244 (343)
T 3gaz_A          219 LVYDTLG-G--------------PVLDASFSAVKRFGHVVS  244 (343)
T ss_dssp             EEEESSC-T--------------HHHHHHHHHEEEEEEEEE
T ss_pred             EEEECCC-c--------------HHHHHHHHHHhcCCeEEE
Confidence            6654322 2              567778889999999863

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=88.94  E-value=5.1  Score=32.78  Aligned_cols=115  Identities=10%  Similarity=0.037  Sum_probs=63.4

Q ss_pred             CCCcEEEEcCC--cc--H-HHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhccC--
Q 026219          124 TLPLMVDIGSG--SG--R-FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVSS--  194 (241)
Q Consensus       124 ~~~~VLDIGCG--tG--~-~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~~--  194 (241)
                      ++.++|=.|++  .|  . ++..|+++  + .+|+.++.++...+.+.+..++.+..++.++.+|+.+.  +...+..  
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~--G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   82 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEA--G-ARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK   82 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHT--T-CEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHC--C-CEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence            35678888866  23  2 33444444  4 68999999987666666655544434789999999763  1111110  


Q ss_pred             -CCCcEeEEEEeCCCCc--------hhhhhhhcc-------cchHHHHHHHHhccccCCEEEc
Q 026219          195 -YPGPLMLVSILCPDPH--------FKKKHHKRR-------VVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 -~~~~~d~V~~~~~~~~--------~~~~~~~~r-------~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       .-+.+|.++.+-....        .........       .-...+++.+...|+++|.|++
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~  145 (266)
T 3oig_A           83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVT  145 (266)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEE
T ss_pred             HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEE
Confidence             0135787665532211        000000000       0112366777888888888763

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=88.90  E-value=5.1  Score=34.46  Aligned_cols=107  Identities=12%  Similarity=0.035  Sum_probs=65.9

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC---CCCEEEEEccccchH-Hhhcc-CCCCc-E
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA---LSNIHFLFANASVSF-KQLVS-SYPGP-L  199 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~---l~ni~~~~~D~~~~~-~~~~~-~~~~~-~  199 (241)
                      ..||+||||-=.....+..  +....++=|| .|++++..++.+.+.+   ..+..++.+|+.+.+ +.+.. .++.. -
T Consensus       104 ~QvV~LGaGlDTra~Rl~~--~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P  180 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDW--PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR  180 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCC--CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred             CeEEEeCCCCCchhhhccC--CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence            5699999998887665531  3326899999 5999999999887643   246889999987622 22211 11211 1


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      -.++......+....      -...+++.+...+.||+.+++
T Consensus       181 t~~i~Egvl~Yl~~~------~~~~ll~~l~~~~~~gs~l~~  216 (310)
T 2uyo_A          181 TAWLAEGLLMYLPAT------AQDGLFTEIGGLSAVGSRIAV  216 (310)
T ss_dssp             EEEEECSCGGGSCHH------HHHHHHHHHHHTCCTTCEEEE
T ss_pred             EEEEEechHhhCCHH------HHHHHHHHHHHhCCCCeEEEE
Confidence            222221111111110      114899999999899998764

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=88.44  E-value=0.53  Score=42.85  Aligned_cols=47  Identities=15%  Similarity=0.227  Sum_probs=36.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC----CCCcEEEEEeCCHHHHHHHHHHHHH
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN----PDSGNYLGLEIRQKLVKRAEFWVQE  171 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~----p~~~~v~giDis~~~v~~a~~~~~~  171 (241)
                      ...|+|+|.|+|.++..+.+..    +...+++-||+|+.+.+.=++++..
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            3689999999999888876532    1114799999999998887777764

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=88.27  E-value=0.53  Score=40.21  Aligned_cols=85  Identities=11%  Similarity=0.044  Sum_probs=54.7

Q ss_pred             CCCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+||=+|+| .|..+..+++.. + .+|++++ +++..+.+++    .|.+  .++ -| .+   . +   ...+|.
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~-G-a~Vi~~~-~~~~~~~~~~----lGa~--~v~-~d-~~---~-v---~~g~Dv  202 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNA-G-YVVDLVS-ASLSQALAAK----RGVR--HLY-RE-PS---Q-V---TQKYFA  202 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHH-T-CEEEEEC-SSCCHHHHHH----HTEE--EEE-SS-GG---G-C---CSCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-C-CEEEEEE-ChhhHHHHHH----cCCC--EEE-cC-HH---H-h---CCCccE
Confidence            357899999997 588888998875 4 5899999 9888887754    4532  223 24 22   2 1   456886


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |+-....               ..++...+.|++||+++
T Consensus       203 v~d~~g~---------------~~~~~~~~~l~~~G~~v  226 (315)
T 3goh_A          203 IFDAVNS---------------QNAAALVPSLKANGHII  226 (315)
T ss_dssp             EECC----------------------TTGGGEEEEEEEE
T ss_pred             EEECCCc---------------hhHHHHHHHhcCCCEEE
Confidence            6533222               22255788999999876

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=87.95  E-value=6.2  Score=32.56  Aligned_cols=114  Identities=13%  Similarity=0.035  Sum_probs=63.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCC------------HHHHHHHHHHHHHhCCCCEEEEEccccchH-
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIR------------QKLVKRAEFWVQELALSNIHFLFANASVSF-  188 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis------------~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~-  188 (241)
                      +++++|=.|.+.| ++..+++.+  .+ .+|+.+|.+            .+.++.+...++..+ .++.++.+|+.+.- 
T Consensus         9 ~gk~vlVTGas~g-IG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGARG-QGRSHAVKLAEEG-ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT-CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-SCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCC-CeEEEEcccccccccccchhhhHHHHHHHHHHHhcC-CceEEEEccCCCHHH
Confidence            3577888886654 444444433  24 689999987            666666666665554 47899999997631 


Q ss_pred             -----HhhccCCCCcEeEEEEeCCCCchh--hhhhh-cc------cchHHHHHHHHhccccCCEEEc
Q 026219          189 -----KQLVSSYPGPLMLVSILCPDPHFK--KKHHK-RR------VVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       189 -----~~~~~~~~~~~d~V~~~~~~~~~~--~~~~~-~r------~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                           ...... -+.+|.++.+-......  ..... .+      .-.-.+++.+.+.|+.+|.|++
T Consensus        86 v~~~~~~~~~~-~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~  151 (287)
T 3pxx_A           86 VSRELANAVAE-FGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIIT  151 (287)
T ss_dssp             HHHHHHHHHHH-HSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             HHHHHHHHHHH-cCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEE
Confidence                 111111 13578776543211000  00000 00      0112456777778888888763

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=87.69  E-value=1.9  Score=37.48  Aligned_cols=92  Identities=14%  Similarity=0.135  Sum_probs=55.8

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEcccc--chHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANAS--VSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~--~~~~~~~~~~~~~~d  200 (241)
                      .+.+||=+|+| .|..+..+++..++ .+|+++|.+++.++.+++    .|.+  .++..+-.  +.+....  ....+|
T Consensus       186 ~g~~VlV~GaG~vG~~avqlak~~~G-a~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~v~~~~--~g~g~D  256 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAER----LGAD--HVVDARRDPVKQVMELT--RGRGVN  256 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHH----TTCS--EEEETTSCHHHHHHHHT--TTCCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----hCCC--EEEeccchHHHHHHHHh--CCCCCc
Confidence            57889999986 56777788887635 689999999998887753    4543  22322111  1111221  122688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHH--HHHHHHhccccCCEEE
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKP--LVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~--ll~~l~r~LkpGG~l~  240 (241)
                      .|+-....+              .  .++...+.  +||+++
T Consensus       257 vvid~~G~~--------------~~~~~~~~~~~--~~G~~v  282 (359)
T 1h2b_A          257 VAMDFVGSQ--------------ATVDYTPYLLG--RMGRLI  282 (359)
T ss_dssp             EEEESSCCH--------------HHHHHGGGGEE--EEEEEE
T ss_pred             EEEECCCCc--------------hHHHHHHHhhc--CCCEEE
Confidence            766443332              3  56666666  888775

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=87.35  E-value=0.92  Score=41.83  Aligned_cols=59  Identities=10%  Similarity=-0.040  Sum_probs=43.3

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS  187 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~  187 (241)
                      .-+++|+-||.|.+..-+.+..-  -.|.++|+++.+++.-+.|..  ..++..++.+|+.+.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~--~~v~avE~d~~A~~ty~~N~~--~~p~~~~~~~DI~~i  146 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGG--QCVFTSEWNKHAVRTYKANHY--CDPATHHFNEDIRDI  146 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTE--EEEEEECCCHHHHHHHHHHSC--CCTTTCEEESCTHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHhcc--cCCCcceeccchhhh
Confidence            35799999999999999877532  248999999998877665431  113456778898764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=87.07  E-value=2.3  Score=34.79  Aligned_cols=79  Identities=9%  Similarity=-0.025  Sum_probs=49.2

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccC
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSS  194 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~  194 (241)
                      ++++||=.|.+ +|.++..+++.+  .+ .+|+.++.++...+.+++..+..+  ++.++.+|+.+.      +......
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREG-AELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcC-CCEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHHHHH
Confidence            46889999974 355555555443  24 689999999766666655544443  578899999763      1122111


Q ss_pred             CCCcEeEEEEeC
Q 026219          195 YPGPLMLVSILC  206 (241)
Q Consensus       195 ~~~~~d~V~~~~  206 (241)
                       -+.+|.++.+-
T Consensus        90 -~g~id~lv~nA  100 (271)
T 3ek2_A           90 -WDSLDGLVHSI  100 (271)
T ss_dssp             -CSCEEEEEECC
T ss_pred             -cCCCCEEEECC
Confidence             14688777654

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=86.44  E-value=11  Score=31.65  Aligned_cols=77  Identities=14%  Similarity=0.009  Sum_probs=47.9

Q ss_pred             CCCcEEEEcCCcc-----HHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhc
Q 026219          124 TLPLMVDIGSGSG-----RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLV  192 (241)
Q Consensus       124 ~~~~VLDIGCGtG-----~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~  192 (241)
                      +++++|=.|.+.|     .++..|+++  + .+|+.++.++...+.+++..+..+  ++.++.+|+.+.      ++...
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~--G-~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~  104 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREA--G-AELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLE  104 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHT--T-CEEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHC--C-CEEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHH
Confidence            4578898997643     233344444  4 679999999876666665554443  688999999763      11111


Q ss_pred             cCCCCcEeEEEEeC
Q 026219          193 SSYPGPLMLVSILC  206 (241)
Q Consensus       193 ~~~~~~~d~V~~~~  206 (241)
                      .. -+.+|.++.+-
T Consensus       105 ~~-~g~iD~lVnnA  117 (293)
T 3grk_A          105 KK-WGKLDFLVHAI  117 (293)
T ss_dssp             HH-TSCCSEEEECC
T ss_pred             Hh-cCCCCEEEECC
Confidence            11 14678776554

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=86.27  E-value=3.2  Score=33.18  Aligned_cols=72  Identities=17%  Similarity=0.128  Sum_probs=42.9

Q ss_pred             EEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219          128 MVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL  205 (241)
Q Consensus       128 VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~  205 (241)
                      |+=+|  .|.++..+++..  .+ ..|+.+|.+++.++...+   .   .++.++.+|+.+.- .+....-...|.|++.
T Consensus         3 iiIiG--~G~~G~~la~~L~~~g-~~v~vid~~~~~~~~l~~---~---~~~~~i~gd~~~~~-~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            3 VIIIG--GETTAYYLARSMLSRK-YGVVIINKDRELCEEFAK---K---LKATIIHGDGSHKE-ILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             EEEEC--CHHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHH---H---SSSEEEESCTTSHH-HHHHHTCCTTCEEEEC
T ss_pred             EEEEC--CCHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHH---H---cCCeEEEcCCCCHH-HHHhcCcccCCEEEEe
Confidence            44455  477777666543  23 579999999998776432   1   24678999997621 1111012345777766


Q ss_pred             CCCC
Q 026219          206 CPDP  209 (241)
Q Consensus       206 ~~~~  209 (241)
                      .++.
T Consensus        73 ~~~d   76 (218)
T 3l4b_C           73 TPRD   76 (218)
T ss_dssp             CSCH
T ss_pred             cCCc
Confidence            6553

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=85.88  E-value=3.1  Score=34.76  Aligned_cols=78  Identities=13%  Similarity=0.174  Sum_probs=52.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSY  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~  195 (241)
                      +++++|=-|.+.| +...+++++  .+ .+|+.+|++++.++.+.+.++..+ .++.++.+|+.+.      ++.....+
T Consensus         6 ~gKvalVTGas~G-IG~aiA~~la~~G-a~Vv~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSG-IGRAIAKKFALND-SIVVAVELLEDRLNQIVQELRGMG-KEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4678888887666 344444433  24 789999999999988888887766 4788999999763      12222111


Q ss_pred             CCcEeEEEEe
Q 026219          196 PGPLMLVSIL  205 (241)
Q Consensus       196 ~~~~d~V~~~  205 (241)
                       +.+|.++.+
T Consensus        83 -G~iDiLVNN   91 (254)
T 4fn4_A           83 -SRIDVLCNN   91 (254)
T ss_dssp             -SCCCEEEEC
T ss_pred             -CCCCEEEEC
Confidence             568876654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=85.76  E-value=3.6  Score=33.74  Aligned_cols=78  Identities=10%  Similarity=-0.024  Sum_probs=51.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSY  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~  195 (241)
                      +++++|=.|.+.| ++..+++.+  .+ .+|+.+|.+++.++.+.+.++..+ .++.++.+|+.+.      +..... .
T Consensus         6 ~~k~vlVTGas~G-IG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~-~   81 (252)
T 3h7a_A            6 RNATVAVIGAGDY-IGAEIAKKFAAEG-FTVFAGRRNGEKLAPLVAEIEAAG-GRIVARSLDARNEDEVTAFLNAADA-H   81 (252)
T ss_dssp             CSCEEEEECCSSH-HHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHH-H
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECcCCCHHHHHHHHHHHHh-h
Confidence            3567888887655 444444433  24 689999999988888777776655 4789999999763      112222 1


Q ss_pred             CCcEeEEEEeC
Q 026219          196 PGPLMLVSILC  206 (241)
Q Consensus       196 ~~~~d~V~~~~  206 (241)
                       +.+|.++.+-
T Consensus        82 -g~id~lv~nA   91 (252)
T 3h7a_A           82 -APLEVTIFNV   91 (252)
T ss_dssp             -SCEEEEEECC
T ss_pred             -CCceEEEECC
Confidence             5788776554

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=85.39  E-value=0.76  Score=39.91  Aligned_cols=62  Identities=15%  Similarity=0.096  Sum_probs=39.4

Q ss_pred             EEEE-EccccchHHhhccCCCCcEeEEEEeCCCCchhhh---hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          177 IHFL-FANASVSFKQLVSSYPGPLMLVSILCPDPHFKKK---HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       177 i~~~-~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~---~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+++ ++|+.+.+..+   +++++|+|++..|-....+.   +..........+.++.++|+|||.+++
T Consensus        39 ~~l~i~gD~l~~L~~l---~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i  104 (319)
T 1eg2_A           39 RHVYDVCDCLDTLAKL---PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAI  104 (319)
T ss_dssp             EEEEEECCHHHHHHTS---CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEECCcHHHHHHhC---ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence            5677 99998765442   36789999887553211000   000011235788889999999999875

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=85.25  E-value=5.8  Score=32.77  Aligned_cols=79  Identities=8%  Similarity=-0.053  Sum_probs=50.1

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--H----HhhccCCC
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--F----KQLVSSYP  196 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~----~~~~~~~~  196 (241)
                      +.++|=.|.+ |.++..+++.+  .+ .+|+.++.+++.++...+.++..+ .++.++.+|+.+.  +    +.....++
T Consensus        21 ~k~vlVTGas-~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   97 (273)
T 1ae1_A           21 GTTALVTGGS-KGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKG-LNVEGSVCDLLSRTERDKLMQTVAHVFD   97 (273)
T ss_dssp             TCEEEEESCS-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCc-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5678888854 55555555443  24 689999999987776666565544 3688999999763  1    11111123


Q ss_pred             CcEeEEEEeC
Q 026219          197 GPLMLVSILC  206 (241)
Q Consensus       197 ~~~d~V~~~~  206 (241)
                      +.+|.++.+-
T Consensus        98 g~id~lv~nA  107 (273)
T 1ae1_A           98 GKLNILVNNA  107 (273)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCcEEEECC
Confidence            5688776553

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=85.15  E-value=4.1  Score=34.93  Aligned_cols=71  Identities=13%  Similarity=-0.047  Sum_probs=45.6

Q ss_pred             CcEEEEcCCccHHHHHHHHHCC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          126 PLMVDIGSGSGRFLIWLARRNP-DSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p-~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..++=+|+  |..+..+++... ... ++.+|.+++.++ +++       .++.++.+|+.+.- .+..-.-...|.+++
T Consensus       116 ~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~-------~~~~~i~gd~~~~~-~L~~a~i~~a~~vi~  183 (336)
T 1lnq_A          116 RHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR-------SGANFVHGDPTRVS-DLEKANVRGARAVIV  183 (336)
T ss_dssp             CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH-------TTCEEEESCTTSHH-HHHHTCSTTEEEEEE
T ss_pred             CCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh-------CCcEEEEeCCCCHH-HHHhcChhhccEEEE
Confidence            35766665  778888877652 214 999999999887 542       35789999998631 111111245777776


Q ss_pred             eCCC
Q 026219          205 LCPD  208 (241)
Q Consensus       205 ~~~~  208 (241)
                      ..++
T Consensus       184 ~~~~  187 (336)
T 1lnq_A          184 DLES  187 (336)
T ss_dssp             CCSS
T ss_pred             cCCc
Confidence            6554

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=85.00  E-value=2.9  Score=35.56  Aligned_cols=89  Identities=12%  Similarity=0.007  Sum_probs=57.6

Q ss_pred             cEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          127 LMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       127 ~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      .||=+|+  |.|..+..+++.. + .+|+++|.+++..+.+++    .|.+.  ++..+-.+.   ......+.+|.++ 
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~-G-a~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~---~~~~~~~~~d~v~-  216 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL-G-YQVAAVSGRESTHGYLKS----LGANR--ILSRDEFAE---SRPLEKQLWAGAI-  216 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT-T-CCEEEEESCGGGHHHHHH----HTCSE--EEEGGGSSC---CCSSCCCCEEEEE-
T ss_pred             eEEEECCCcHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHh----cCCCE--EEecCCHHH---HHhhcCCCccEEE-
Confidence            4999997  4789999999975 4 589999999998888754    45432  221111110   1111234678654 


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ....              ...++...+.|+|+|++++
T Consensus       217 d~~g--------------~~~~~~~~~~l~~~G~iv~  239 (324)
T 3nx4_A          217 DTVG--------------DKVLAKVLAQMNYGGCVAA  239 (324)
T ss_dssp             ESSC--------------HHHHHHHHHTEEEEEEEEE
T ss_pred             ECCC--------------cHHHHHHHHHHhcCCEEEE
Confidence            3221              2578889999999999863

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=84.85  E-value=1.5  Score=37.90  Aligned_cols=93  Identities=10%  Similarity=0.020  Sum_probs=52.6

Q ss_pred             CCCcEEEEcC-C-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGS-G-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGC-G-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .+.+||=+|+ | .|..+..+++.... ..|++++ +++..+.++     .|...  ++. +-.+..+.+....+..+|.
T Consensus       142 ~g~~VlV~Ga~G~vG~~a~qla~~~g~-~~V~~~~-~~~~~~~~~-----~ga~~--~~~-~~~~~~~~~~~~~~~g~Dv  211 (349)
T 4a27_A          142 EGMSVLVHSAGGGVGQAVAQLCSTVPN-VTVFGTA-STFKHEAIK-----DSVTH--LFD-RNADYVQEVKRISAEGVDI  211 (349)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHTTSTT-CEEEEEE-CGGGHHHHG-----GGSSE--EEE-TTSCHHHHHHHHCTTCEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCC-cEEEEeC-CHHHHHHHH-----cCCcE--EEc-CCccHHHHHHHhcCCCceE
Confidence            5788999998 3 67888888887655 6899998 555444432     34332  232 2112222221112456887


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+-....+               .++...+.|++||++++
T Consensus       212 v~d~~g~~---------------~~~~~~~~l~~~G~~v~  236 (349)
T 4a27_A          212 VLDCLCGD---------------NTGKGLSLLKPLGTYIL  236 (349)
T ss_dssp             EEEECC----------------------CTTEEEEEEEEE
T ss_pred             EEECCCch---------------hHHHHHHHhhcCCEEEE
Confidence            76544322               23668899999999863

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=84.63  E-value=1.9  Score=37.34  Aligned_cols=97  Identities=12%  Similarity=0.103  Sum_probs=54.2

Q ss_pred             CC-CcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc------cccchHHhhc--
Q 026219          124 TL-PLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA------NASVSFKQLV--  192 (241)
Q Consensus       124 ~~-~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~------D~~~~~~~~~--  192 (241)
                      .+ .+||=+|+  |.|..+..+++.. + .+++++..+++.++..++.+++.|.+.  ++..      |..+.+....  
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~-G-a~vi~~~~~~~~~~~~~~~~~~lGa~~--vi~~~~~~~~~~~~~i~~~t~~  241 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLL-N-FNSISVIRDRPNLDEVVASLKELGATQ--VITEDQNNSREFGPTIKEWIKQ  241 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHH-T-CEEEEEECCCTTHHHHHHHHHHHTCSE--EEEHHHHHCGGGHHHHHHHHHH
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHC-C-CEEEEEecCccccHHHHHHHHhcCCeE--EEecCccchHHHHHHHHHHhhc
Confidence            46 78998887  4788888888875 4 578888765543211122233456532  2221      2211111111  


Q ss_pred             cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .  ...+|.|+-....+              .+. ...+.|++||++++
T Consensus       242 ~--~~g~Dvvid~~G~~--------------~~~-~~~~~l~~~G~~v~  273 (364)
T 1gu7_A          242 S--GGEAKLALNCVGGK--------------SST-GIARKLNNNGLMLT  273 (364)
T ss_dssp             H--TCCEEEEEESSCHH--------------HHH-HHHHTSCTTCEEEE
T ss_pred             c--CCCceEEEECCCch--------------hHH-HHHHHhccCCEEEE
Confidence            1  24588765433221              333 67899999999863

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=84.36  E-value=2.1  Score=36.50  Aligned_cols=89  Identities=9%  Similarity=0.066  Sum_probs=54.7

Q ss_pred             cEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-cc-cchHHhhccCCCCcEeEE
Q 026219          127 LMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-NA-SVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       127 ~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D~-~~~~~~~~~~~~~~~d~V  202 (241)
                      +||=+|+  |.|..+..+++.. + .+|++++.+++.++.+++    .|.+.  ++.. |. .+.... .  ....+|.|
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~-G-a~vi~~~~~~~~~~~~~~----lGa~~--~i~~~~~~~~~~~~-~--~~~~~d~v  220 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKR-G-YTVEASTGKAAEHDYLRV----LGAKE--VLAREDVMAERIRP-L--DKQRWAAA  220 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT-T-CCEEEEESCTTCHHHHHH----TTCSE--EEECC----------C--CSCCEEEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHH----cCCcE--EEecCCcHHHHHHH-h--cCCcccEE
Confidence            7999997  5788888998875 3 579999999887777643    45432  2211 11 111111 1  12458876


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +-....               ..++...+.|++||++++
T Consensus       221 id~~g~---------------~~~~~~~~~l~~~G~~v~  244 (328)
T 1xa0_A          221 VDPVGG---------------RTLATVLSRMRYGGAVAV  244 (328)
T ss_dssp             EECSTT---------------TTHHHHHHTEEEEEEEEE
T ss_pred             EECCcH---------------HHHHHHHHhhccCCEEEE
Confidence            544322               235667889999998863

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=84.16  E-value=7.2  Score=31.12  Aligned_cols=71  Identities=10%  Similarity=0.082  Sum_probs=44.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-EEEEccccchHHhhccCCCCcEe
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNI-HFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ++.+||=.| |+|.++..+++.+  .+ .+|++++.++...+....       .++ +++.+|+.+.+...+    ..+|
T Consensus        20 ~~~~ilVtG-atG~iG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~----~~~D   86 (236)
T 3e8x_A           20 QGMRVLVVG-ANGKVARYLLSELKNKG-HEPVAMVRNEEQGPELRE-------RGASDIVVANLEEDFSHAF----ASID   86 (236)
T ss_dssp             -CCEEEEET-TTSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHH-------TTCSEEEECCTTSCCGGGG----TTCS
T ss_pred             CCCeEEEEC-CCChHHHHHHHHHHhCC-CeEEEEECChHHHHHHHh-------CCCceEEEcccHHHHHHHH----cCCC
Confidence            357888888 4566666655543  24 689999999876554321       267 899999973222222    3578


Q ss_pred             EEEEeCC
Q 026219          201 LVSILCP  207 (241)
Q Consensus       201 ~V~~~~~  207 (241)
                      .|+.+..
T Consensus        87 ~vi~~ag   93 (236)
T 3e8x_A           87 AVVFAAG   93 (236)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            7765543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=84.14  E-value=9  Score=32.07  Aligned_cols=114  Identities=10%  Similarity=0.040  Sum_probs=62.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCC--HHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhcc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIR--QKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVS  193 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis--~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~  193 (241)
                      +++++|=.|.+ |.++..+++.+  .+ .+|+.++.+  +...+...+.++..+ .++.++.+|+.+.      ++....
T Consensus        48 ~~k~vlVTGas-~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGGD-SGIGRAAAIAYAREG-ADVAINYLPAEEEDAQQVKALIEECG-RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTT-CEEEEECCGGGHHHHHHHHHHHHHTT-CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCC-CEEEEEeCCcchhHHHHHHHHHHHcC-CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            35788888865 44555555443  24 679999987  344555555555544 4788999999763      111111


Q ss_pred             CCCCcEeEEEEeCCCCc----hhh-hhhh-cc------cchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPH----FKK-KHHK-RR------VVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~----~~~-~~~~-~r------~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      . -+.+|.++.+-....    ..+ .... .+      .-...+++.+.+.|+.+|.|++
T Consensus       125 ~-~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~  183 (294)
T 3r3s_A          125 A-LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIIT  183 (294)
T ss_dssp             H-HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             H-cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEE
Confidence            0 146787765532110    000 0000 00      0112566777788888888763

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=83.99  E-value=3.3  Score=31.20  Aligned_cols=76  Identities=14%  Similarity=0.083  Sum_probs=42.4

Q ss_pred             CCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +.+|+=+|+|. |......+... + .+|+++|.+++.++.+++      ..++.++.+|..+. +.+....-...|.|+
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~-g-~~V~vid~~~~~~~~~~~------~~g~~~~~~d~~~~-~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSS-G-HSVVVVDKNEYAFHRLNS------EFSGFTVVGDAAEF-ETLKECGMEKADMVF   89 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCGGGGGGSCT------TCCSEEEESCTTSH-HHHHTTTGGGCSEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHh------cCCCcEEEecCCCH-HHHHHcCcccCCEEE
Confidence            57899898763 44443333332 3 589999999886554321      12345677776542 111110113468777


Q ss_pred             EeCCCC
Q 026219          204 ILCPDP  209 (241)
Q Consensus       204 ~~~~~~  209 (241)
                      ...+++
T Consensus        90 ~~~~~~   95 (155)
T 2g1u_A           90 AFTNDD   95 (155)
T ss_dssp             ECSSCH
T ss_pred             EEeCCc
Confidence            766543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=83.97  E-value=6.5  Score=32.12  Aligned_cols=79  Identities=9%  Similarity=-0.045  Sum_probs=49.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HH----hhccCCC
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FK----QLVSSYP  196 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~----~~~~~~~  196 (241)
                      +.++|=.|. +|.++..+++.+  .+ .+|+.++.+++.++...+.++..+ .++.++.+|+.+.  +.    .....+.
T Consensus         9 ~k~vlVTGa-s~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (260)
T 2ae2_A            9 GCTALVTGG-SRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKG-FKVEASVCDLSSRSERQELMNTVANHFH   85 (260)
T ss_dssp             TCEEEEESC-SSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            567887785 455555555443  24 689999999987776666555444 3688899999763  11    1111122


Q ss_pred             CcEeEEEEeC
Q 026219          197 GPLMLVSILC  206 (241)
Q Consensus       197 ~~~d~V~~~~  206 (241)
                      +.+|.++.+-
T Consensus        86 g~id~lv~~A   95 (260)
T 2ae2_A           86 GKLNILVNNA   95 (260)
T ss_dssp             TCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5688776553

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=83.95  E-value=8.3  Score=28.75  Aligned_cols=75  Identities=12%  Similarity=-0.002  Sum_probs=42.0

Q ss_pred             CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIR-QKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis-~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .+|+=+|+  |..+..+++..  .+ ..|+.+|.+ ++..+...+..   . .++.++.+|+.+.- .+....-...|.|
T Consensus         4 ~~vlI~G~--G~vG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~~~---~-~~~~~i~gd~~~~~-~l~~a~i~~ad~v   75 (153)
T 1id1_A            4 DHFIVCGH--SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRL---G-DNADVIPGDSNDSS-VLKKAGIDRCRAI   75 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHH---C-TTCEEEESCTTSHH-HHHHHTTTTCSEE
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCC-CCEEEEECCChHHHHHHHHhh---c-CCCeEEEcCCCCHH-HHHHcChhhCCEE
Confidence            45776765  66666655443  23 579999997 45444433221   1 35789999987521 1111012346777


Q ss_pred             EEeCCC
Q 026219          203 SILCPD  208 (241)
Q Consensus       203 ~~~~~~  208 (241)
                      ++..++
T Consensus        76 i~~~~~   81 (153)
T 1id1_A           76 LALSDN   81 (153)
T ss_dssp             EECSSC
T ss_pred             EEecCC
Confidence            766554

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=82.95  E-value=7  Score=31.46  Aligned_cols=72  Identities=14%  Similarity=-0.009  Sum_probs=45.6

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL  205 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~  205 (241)
                      ..|+=+|+  |..+..+++.......|+++|.+++.++.++        .++.++.+|+.+. +.+....-...|.|++.
T Consensus        10 ~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~--------~~~~~i~gd~~~~-~~l~~a~i~~ad~vi~~   78 (234)
T 2aef_A           10 RHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR--------SGANFVHGDPTRV-SDLEKANVRGARAVIVD   78 (234)
T ss_dssp             CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH--------TTCEEEESCTTCH-HHHHHTTCTTCSEEEEC
T ss_pred             CEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh--------cCCeEEEcCCCCH-HHHHhcCcchhcEEEEc
Confidence            56777776  6888888877643122999999998766542        2478899999752 11111112346777766


Q ss_pred             CCC
Q 026219          206 CPD  208 (241)
Q Consensus       206 ~~~  208 (241)
                      .++
T Consensus        79 ~~~   81 (234)
T 2aef_A           79 LES   81 (234)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            554

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=82.68  E-value=4.3  Score=33.74  Aligned_cols=60  Identities=8%  Similarity=0.011  Sum_probs=42.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      +.++|=.|++ |.++..+++.+  .+ .+|++++.+++.++...+.+++.+..++.++.+|+.+
T Consensus        28 ~k~vlITGas-ggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   89 (286)
T 1xu9_A           28 GKKVIVTGAS-KGIGREMAYHLAKMG-AHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED   89 (286)
T ss_dssp             TCEEEESSCS-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence            4678878854 55555555443  24 6899999999888777666665554468999999976

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=82.56  E-value=2.1  Score=38.57  Aligned_cols=42  Identities=12%  Similarity=0.063  Sum_probs=34.0

Q ss_pred             CCCcEEEEcC-C-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219          124 TLPLMVDIGS-G-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF  167 (241)
Q Consensus       124 ~~~~VLDIGC-G-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~  167 (241)
                      .+.+||=+|+ | .|..+..+++.. + .++++++.+++.++.+++
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~-G-a~vi~~~~~~~~~~~~~~  271 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAG-G-ANPICVVSSPQKAEICRA  271 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHc-C-CeEEEEECCHHHHHHHHh
Confidence            4678999997 4 788888898875 4 589999999988887754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=82.30  E-value=11  Score=26.89  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=41.6

Q ss_pred             CcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          126 PLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .+|+=+|+  |..+..+++..  .+ .+|+.+|.+++.++..++   ..   ++.++.+|..+. +.+........|.|+
T Consensus         5 m~i~IiG~--G~iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~---~~---~~~~~~~d~~~~-~~l~~~~~~~~d~vi   74 (140)
T 1lss_A            5 MYIIIAGI--GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASA---EI---DALVINGDCTKI-KTLEDAGIEDADMYI   74 (140)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH---HC---SSEEEESCTTSH-HHHHHTTTTTCSEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHH---hc---CcEEEEcCCCCH-HHHHHcCcccCCEEE
Confidence            46777776  55555544432  23 589999999987665432   11   356777887542 111111123578777


Q ss_pred             EeCCC
Q 026219          204 ILCPD  208 (241)
Q Consensus       204 ~~~~~  208 (241)
                      +..++
T Consensus        75 ~~~~~   79 (140)
T 1lss_A           75 AVTGK   79 (140)
T ss_dssp             ECCSC
T ss_pred             EeeCC
Confidence            76554

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=82.20  E-value=5  Score=32.85  Aligned_cols=59  Identities=7%  Similarity=0.102  Sum_probs=42.5

Q ss_pred             CCcEEEEcC-Ccc--H-HHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          125 LPLMVDIGS-GSG--R-FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       125 ~~~VLDIGC-GtG--~-~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      +.++|=.|. |.|  . ++..|+++  + .+|+.+|.+++.++...+.+++.+..++.++.+|+.+
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~--G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~   84 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLE--G-ADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS   84 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTC
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHC--C-CEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence            567888886 554  2 33344444  4 6899999999888877777655554579999999976

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=82.16  E-value=18  Score=30.17  Aligned_cols=114  Identities=11%  Similarity=0.047  Sum_probs=62.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHH-HHHHHHHHHHHhCCCCEEEEEccccch------HHhhccC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQK-LVKRAEFWVQELALSNIHFLFANASVS------FKQLVSS  194 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~-~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~  194 (241)
                      +++++|=.|.+.| ++..+++++  .+ .+|+.++.++. ..+...+..+..+ .++.++.+|+.+.      ++.....
T Consensus        46 ~gk~vlVTGas~G-IG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSG-IGRAVSIAFAKEG-ANIAIAYLDEEGDANETKQYVEKEG-VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHTTT-CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            3578888886544 455554443  24 68999999865 3444444444333 4789999999763      1111111


Q ss_pred             CCCcEeEEEEeCCCCc----hhh-hhhh-cc------cchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPH----FKK-KHHK-RR------VVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~----~~~-~~~~-~r------~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       -+.+|.++.+-....    ..+ .... .+      .-...+++.+.+.|+.+|.|++
T Consensus       123 -~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~  180 (291)
T 3ijr_A          123 -LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIIN  180 (291)
T ss_dssp             -HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             -cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEE
Confidence             145787765532110    000 0000 00      0113566777888888888763

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=82.10  E-value=2.8  Score=42.10  Aligned_cols=78  Identities=10%  Similarity=0.060  Sum_probs=52.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhh-----c-----cC
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQL-----V-----SS  194 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~-----~-----~~  194 (241)
                      ..+++|+-||.|.+..-|.+..-. -.+.++|+++.+++.-+.|     .++..++.+|+.+.....     .     ..
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~-~vv~avEid~~A~~ty~~N-----~p~~~~~~~DI~~l~~~~~~~di~~~~~~~l  613 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGIS-DTLWAIEMWDPAAQAFRLN-----NPGSTVFTEDCNILLKLVMAGETTNSRGQRL  613 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSE-EEEEEECSSHHHHHHHHHH-----CTTSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCC-ceEEEEECCHHHHHHHHHh-----CCCCccccccHHHHhhhccchhhhhhhhhhc
Confidence            357999999999999999887321 1588999999988776543     245677888875432110     0     01


Q ss_pred             -CCCcEeEEEEeCCC
Q 026219          195 -YPGPLMLVSILCPD  208 (241)
Q Consensus       195 -~~~~~d~V~~~~~~  208 (241)
                       ..+.+|+++..+|-
T Consensus       614 p~~~~vDll~GGpPC  628 (1002)
T 3swr_A          614 PQKGDVEMLCGGPPC  628 (1002)
T ss_dssp             CCTTTCSEEEECCCC
T ss_pred             ccCCCeeEEEEcCCC
Confidence             12468988877654

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=81.70  E-value=8.6  Score=33.41  Aligned_cols=94  Identities=16%  Similarity=0.075  Sum_probs=56.9

Q ss_pred             CCCcEEEEc-CC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIG-SG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIG-CG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .+.+||=+| +| .|..+..+++.. + .+|++++ +++..+.++    +.|.+  .++..+-.+..+.+..  ...+|.
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~-G-a~Vi~~~-~~~~~~~~~----~lGa~--~v~~~~~~~~~~~~~~--~~g~D~  251 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAW-D-AHVTAVC-SQDASELVR----KLGAD--DVIDYKSGSVEEQLKS--LKPFDF  251 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-T-CEEEEEE-CGGGHHHHH----HTTCS--EEEETTSSCHHHHHHT--SCCBSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhC-C-CEEEEEe-ChHHHHHHH----HcCCC--EEEECCchHHHHHHhh--cCCCCE
Confidence            467899999 44 788888888875 4 5899999 666555553    44543  2222221122222221  135787


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+-....+             ...++...+.|++||++++
T Consensus       252 vid~~g~~-------------~~~~~~~~~~l~~~G~iv~  278 (375)
T 2vn8_A          252 ILDNVGGS-------------TETWAPDFLKKWSGATYVT  278 (375)
T ss_dssp             EEESSCTT-------------HHHHGGGGBCSSSCCEEEE
T ss_pred             EEECCCCh-------------hhhhHHHHHhhcCCcEEEE
Confidence            66444332             1345667889999998863

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=81.09  E-value=6.6  Score=31.76  Aligned_cols=59  Identities=12%  Similarity=-0.011  Sum_probs=42.9

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      ++++|=.|++ |.++..+++++  .+ .+|+.+|.+++..+...+.++..+ .++.++.+|+.+
T Consensus         9 ~k~vlITGas-~giG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~   69 (253)
T 3qiv_A            9 NKVGIVTGSG-GGIGQAYAEALAREG-AAVVVADINAEAAEAVAKQIVADG-GTAISVAVDVSD   69 (253)
T ss_dssp             TCEEEEETTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTS
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence            5778888865 44455554443  24 689999999998888777776554 468899999976

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=80.62  E-value=2.4  Score=36.16  Aligned_cols=90  Identities=11%  Similarity=0.035  Sum_probs=55.7

Q ss_pred             cEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch-HHhhccCCCCcEeEEE
Q 026219          127 LMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS-FKQLVSSYPGPLMLVS  203 (241)
Q Consensus       127 ~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~-~~~~~~~~~~~~d~V~  203 (241)
                      +||=+|+  |.|..+..+++.. + .+|++++.+++..+.+++    .|.+.  ++.  ..+. ...........+|.|+
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~-G-a~vi~~~~~~~~~~~~~~----lGa~~--v~~--~~~~~~~~~~~~~~~~~d~vi  222 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKR-G-YDVVASTGNREAADYLKQ----LGASE--VIS--REDVYDGTLKALSKQQWQGAV  222 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHH-T-CCEEEEESSSSTHHHHHH----HTCSE--EEE--HHHHCSSCCCSSCCCCEEEEE
T ss_pred             eEEEECCCCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHH----cCCcE--EEE--CCCchHHHHHHhhcCCccEEE
Confidence            7999997  4788888888865 3 579999999887777654    45432  221  1110 0000111124578665


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      -... .              ..++...+.|++||++++
T Consensus       223 d~~g-~--------------~~~~~~~~~l~~~G~iv~  245 (330)
T 1tt7_A          223 DPVG-G--------------KQLASLLSKIQYGGSVAV  245 (330)
T ss_dssp             ESCC-T--------------HHHHHHHTTEEEEEEEEE
T ss_pred             ECCc-H--------------HHHHHHHHhhcCCCEEEE
Confidence            3332 1              457778899999998863

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=80.25  E-value=2.2  Score=39.39  Aligned_cols=86  Identities=10%  Similarity=-0.014  Sum_probs=52.2

Q ss_pred             CCCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ..+.+|+=+|+| .|......++.+ + .+|+++|+++...+.+++    .|.   ++  .+..+    ..    ...|+
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~-G-a~Viv~d~~~~~~~~A~~----~Ga---~~--~~l~e----~l----~~aDv  332 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQ-G-ARVSVTEIDPINALQAMM----EGF---DV--VTVEE----AI----GDADI  332 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHH----TTC---EE--CCHHH----HG----GGCSE
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHH----cCC---EE--ecHHH----HH----hCCCE
Confidence            357899999987 455555556655 3 589999999987666542    343   22  23322    22    24577


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |+..-+.+.         ++.    .+..+.||+||+++
T Consensus       333 Vi~atgt~~---------~i~----~~~l~~mk~ggilv  358 (494)
T 3ce6_A          333 VVTATGNKD---------IIM----LEHIKAMKDHAILG  358 (494)
T ss_dssp             EEECSSSSC---------SBC----HHHHHHSCTTCEEE
T ss_pred             EEECCCCHH---------HHH----HHHHHhcCCCcEEE
Confidence            766544331         111    24566789999875

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=80.18  E-value=8.5  Score=31.08  Aligned_cols=59  Identities=3%  Similarity=-0.000  Sum_probs=41.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      +.+||=.|+ +|.++..+++.+  .+ .+|+++|.++...+...+.++..+ .++.++.+|+.+
T Consensus        13 ~k~vlItGa-sggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~   73 (260)
T 3awd_A           13 NRVAIVTGG-AQNIGLACVTALAEAG-ARVIIADLDEAMATKAVEDLRMEG-HDVSSVVMDVTN   73 (260)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTC
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEecCCC
Confidence            567887885 455666555543  24 689999999887766666565544 468999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d2fcaa1	204	c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr	1e-14
d1yzha1	204	c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra	3e-13
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	7e-06
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	4e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-04
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	0.004
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	0.004

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

 Score = 68.0 bits (165), Expect = 1e-14
 Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 5/127 (3%)

Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174
            W+ V+ N   P+ +++G+G G+F+  +A++NPD  NY+G+E+ + ++  A   V++   
Sbjct: 21  KWNTVFGNDN-PIHIEVGTGKGQFISGMAKQNPDI-NYIGIELFKSVIVTAVQKVKDSEA 78

Query: 175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234
            N+  L  +   +        PG +  V +   DP  KK+H KRR+     +    + + 
Sbjct: 79  QNVKLLNID---ADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMG 135

Query: 235 PGGKVYF 241
            GG ++F
Sbjct: 136 KGGSIHF 142

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 64.1 bits (155), Expect = 3e-13
 Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 5/127 (3%)

Query: 115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL 174
            W +++ N   P+ V++GSG G F+  +A++NPD  NY+G++I++ ++  A   V E+ +
Sbjct: 23  KWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDI-NYIGIDIQKSVLSYALDKVLEVGV 80

Query: 175 SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM 234
            NI  L+ +             G +  + +   DP  KK+H KRR+  K  +D+    L 
Sbjct: 81  PNIKLLWVD---GSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILP 137

Query: 235 PGGKVYF 241
             G+++F
Sbjct: 138 ENGEIHF 144

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 7e-06
 Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 5/112 (4%)

Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS 187
           +++ GSGSG   ++L++     G  +  E+R+     A+   +    S           +
Sbjct: 102 VLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN 161

Query: 188 FKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239
              +     G    +  L  D       +         +     +L  GG  
Sbjct: 162 VDFIHKDISGATEDIKSLTFDAVALDMLNPHVT-----LPVFYPHLKHGGVC 208

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 2/111 (1%)

Query: 129 VDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSF 188
           +D+GSG G  ++  A          G EI            +EL      +     +V F
Sbjct: 221 MDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 279

Query: 189 KQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKV 239
               S      +   I   D            + K  V+ I+     G K+
Sbjct: 280 SLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNK-KVEKILQTAKVGCKI 329

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 9/53 (16%), Positives = 20/53 (37%)

Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFL 180
           ++++G GSG    ++       G    +E  +  +K+A   + E         
Sbjct: 89  ILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRT 141

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 7/115 (6%)

Query: 130 DIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFK 189
           D+  G+G   I L        +   ++   K++K A               +     ++ 
Sbjct: 62  DVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL 118

Query: 190 QLVSSYPGPLMLVSILCPD---PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF 241
            L    P      +++C      H       +   +   + +I   + PGG +  
Sbjct: 119 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRL-ALKNIASMVRPGGLLVI 172

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 128 MVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFL 180
           ++D G GSG     LAR    SG     E R++  K AE  + +  L     +
Sbjct: 107 IIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTI 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.93
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.93
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.82
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.81
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.77
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.76
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.76
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.73
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.72
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.72
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.71
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.71
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.71
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.69
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.69
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.68
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.67
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.67
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.66
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.66
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.65
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.65
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.64
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.64
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.63
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.63
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.63
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.62
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.62
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.62
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.61
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.61
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.6
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.6
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.59
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.59
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.57
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.56
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.54
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.54
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.53
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.51
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.5
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.49
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.47
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.47
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.46
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.46
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.45
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.45
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.43
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.42
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.41
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.39
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.39
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.39
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.36
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.36
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.34
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.33
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.32
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.3
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.29
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.26
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.26
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.26
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.21
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.2
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.19
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.12
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.97
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.97
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.94
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.91
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.9
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.88
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.86
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.85
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.85
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.84
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.81
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.8
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.78
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.76
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.75
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.73
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.72
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.69
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.63
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.61
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.53
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.46
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.36
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.26
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.25
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.24
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.2
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.57
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.5
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.42
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.4
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.4
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.35
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.26
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.23
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.22
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.16
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.84
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.81
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.78
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.68
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.67
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.58
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.47
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.41
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.96
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	95.8
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.64
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.61
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.47
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.2
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.91
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.52
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.4
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	94.37
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	93.99
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.91
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.56
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.55
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.32
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	92.68
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.67
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.54
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	92.5
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	92.16
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.99
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	91.8
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	91.35
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.27
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	90.74
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	90.65
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	90.48
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.21
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	90.07
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.05
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.03
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	89.85
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	88.68
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	88.61
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	88.38
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	88.19
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	85.7
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	85.65
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	85.38
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	84.16
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	83.82
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	83.78
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	83.53
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	83.15
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	83.1
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	83.02
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	82.96
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	82.96
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	82.94
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	82.72
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	82.18
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	81.88
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	80.9
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	80.63

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.93  E-value=9.2e-26  Score=186.61  Aligned_cols=123  Identities=31%  Similarity=0.557  Sum_probs=113.4

Q ss_pred             hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc
Q 026219          114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       114 ~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~  193 (241)
                      .+|.+.|++ .++.|||||||+|.++..+|+.+|+ ..++|||+++.++..|.+++++.+++|+.++.+|+.+..+ .+ 
T Consensus        22 ~~w~~~f~~-~~plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~-~~-   97 (204)
T d1yzha1          22 AKWRDLFGN-DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-   97 (204)
T ss_dssp             TTHHHHHTS-CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-
T ss_pred             ccHHHHcCC-CCCeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhh-hc-
Confidence            479999987 5789999999999999999999999 8999999999999999999999999999999999987432 22 


Q ss_pred             CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       ++.++|.|.++||+||++++|++||+++..+++.+.++|||||.|+|
T Consensus        98 -~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1          98 -EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             -CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             -cCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence             46889999999999999999999999999999999999999999975

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=8.3e-26  Score=186.89  Aligned_cols=123  Identities=28%  Similarity=0.531  Sum_probs=113.7

Q ss_pred             hhhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc
Q 026219          114 PDWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       114 ~~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~  193 (241)
                      .+|...|++ +++.|||||||+|.++..+|+++|+ ..++|||+++.++..|.+++++.+++|+.++.+|+....+. + 
T Consensus        20 ~~w~~~F~~-~~PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~-~-   95 (204)
T d2fcaa1          20 GKWNTVFGN-DNPIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV-F-   95 (204)
T ss_dssp             TCHHHHHTS-CCCEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH-C-
T ss_pred             hHHHHHcCC-CCceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcc-c-
Confidence            379999987 4789999999999999999999999 89999999999999999999999999999999999864432 3 


Q ss_pred             CCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       +++++|.|.+++|+||++++++++|+++..+++++.|+|||||.|+|
T Consensus        96 -~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i  142 (204)
T d2fcaa1          96 -EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF  142 (204)
T ss_dssp             -CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred             -CchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence             47899999999999999999999999999999999999999999875

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.82  E-value=4.1e-20  Score=152.94  Aligned_cols=111  Identities=13%  Similarity=0.224  Sum_probs=91.5

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      +..+...-.++.+|||||||+|.++..+++++   .+|+|+|+|++|++.|+++++..+.+|++++++|+.+     .+.
T Consensus         6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~-----l~~   77 (231)
T d1vl5a_           6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ-----MPF   77 (231)
T ss_dssp             HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C-----CCS
T ss_pred             HHHHhcCCCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhccccccccccccccccccc-----ccc
Confidence            34444444457899999999999999999884   4699999999999999999999999999999999987     444


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++++||.|+....-.|..+.        +.++++++++|||||+++|
T Consensus        78 ~~~~fD~v~~~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~i  116 (231)
T d1vl5a_          78 TDERFHIVTCRIAAHHFPNP--------ASFVSEAYRVLKKGGQLLL  116 (231)
T ss_dssp             CTTCEEEEEEESCGGGCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             cccccccccccccccccCCH--------HHHHHHHHHhcCCCcEEEE
Confidence            57899999877655555443        4999999999999998875

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=4.8e-20  Score=153.67  Aligned_cols=102  Identities=18%  Similarity=0.313  Sum_probs=88.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..++++.   .+|+|||+|+.|++.|+++++..+++|+.++++|+.+     .+.++++||.|+
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~fD~v~   87 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES-----LPFPDDSFDIIT   87 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB-----CCSCTTCEEEEE
T ss_pred             CCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccccccccccccc-----ccccccccceee
Confidence            47899999999999999999985   4699999999999999999999999999999999987     344679999998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ....-.|..+.        ..+++++.++|||||++++
T Consensus        88 ~~~~l~~~~d~--------~~~l~~~~r~LkpgG~~~~  117 (234)
T d1xxla_          88 CRYAAHHFSDV--------RKAVREVARVLKQDGRFLL  117 (234)
T ss_dssp             EESCGGGCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             eeceeecccCH--------HHHHHHHHHeeCCCcEEEE
Confidence            87765555443        4999999999999998864

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.3e-18  Score=145.83  Aligned_cols=108  Identities=20%  Similarity=0.239  Sum_probs=89.2

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      +.+...++.+|||||||+|.++..++++.+  +.|+|||+|+.|++.|++++++.|+. +++|+++|+.+     . .++
T Consensus        27 ~~~~l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~-----~-~~~   98 (245)
T d1nkva_          27 RVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-----Y-VAN   98 (245)
T ss_dssp             HHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-----C-CCS
T ss_pred             HHcCCCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh-----c-ccc
Confidence            444445588999999999999999998764  58999999999999999999999885 59999999986     2 247


Q ss_pred             CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++||.|+......|..+.        ..+++++.++|||||+++|
T Consensus        99 ~~fD~v~~~~~~~~~~d~--------~~~l~~~~r~LkPGG~l~i  135 (245)
T d1nkva_          99 EKCDVAACVGATWIAGGF--------AGAEELLAQSLKPGGIMLI  135 (245)
T ss_dssp             SCEEEEEEESCGGGTSSS--------HHHHHHHTTSEEEEEEEEE
T ss_pred             CceeEEEEEehhhccCCH--------HHHHHHHHHHcCcCcEEEE
Confidence            899999876544444332        4999999999999999875

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.76  E-value=2e-18  Score=147.70  Aligned_cols=104  Identities=18%  Similarity=0.149  Sum_probs=88.0

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      +++.+|||||||+|.++..+++++ + .+|+|||+|+.|++.|+++.+..|+. +++++++|+.+     ++.++++||.
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~-~-~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~-----l~~~~~sfD~  138 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKF-G-VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-----IPCEDNSYDF  138 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-C-CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-----CSSCTTCEEE
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccC-C-cEEEEEeccchhhhhhhccccccccccccccccccccc-----ccccccccch
Confidence            457899999999999999999875 4 58999999999999999999999884 79999999987     4556799999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+......|.++.        ..+++++.++|||||+++|
T Consensus       139 V~~~~~l~h~~d~--------~~~l~~~~~~LkpgG~l~~  170 (282)
T d2o57a1         139 IWSQDAFLHSPDK--------LKVFQECARVLKPRGVMAI  170 (282)
T ss_dssp             EEEESCGGGCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             hhccchhhhccCH--------HHHHHHHHHhcCCCcEEEE
Confidence            9776544333333        4899999999999999875

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=1.8e-18  Score=141.70  Aligned_cols=103  Identities=18%  Similarity=0.307  Sum_probs=83.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.  + .+|+|+|+|++|++.|+++....+. ++.++.+|+.+     ++.++++||.|+
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~--~-~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~-----l~~~~~~fD~I~  107 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDY--G-FEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARK-----LSFEDKTFDYVI  107 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTS-----CCSCTTCEEEEE
T ss_pred             CCCEEEEECCCcchhhhhHhhh--h-cccccccccccchhhhhhhhccccc-ccccccccccc-----ccccCcCceEEE
Confidence            4689999999999999999986  4 5799999999999999999887764 67889999987     455678999998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ....-.|....      -..++++++.++|||||+++|
T Consensus       108 ~~~~l~~~~~~------d~~~~l~~i~~~LkpgG~lii  139 (226)
T d1ve3a1         108 FIDSIVHFEPL------ELNQVFKEVRRVLKPSGKFIM  139 (226)
T ss_dssp             EESCGGGCCHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             EecchhhCChh------HHHHHHHHHHHHcCcCcEEEE
Confidence            77655443210      014899999999999999875

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=9.8e-18  Score=140.04  Aligned_cols=103  Identities=20%  Similarity=0.360  Sum_probs=82.8

Q ss_pred             cCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEe
Q 026219          121 KNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       121 ~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      ...+..+|||||||+|.++..|++++   .+|+|||+|++|++.|++++.+.+. +++++++|+++     ++ ++..||
T Consensus        38 ~~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~-----l~-~~~~fD  107 (251)
T d1wzna1          38 AKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLE-----IA-FKNEFD  107 (251)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGG-----CC-CCSCEE
T ss_pred             cCCCCCEEEEeCCCCCccchhhcccc---eEEEEEeeccccccccccccccccc-cchheehhhhh-----cc-cccccc
Confidence            44456789999999999999999973   4799999999999999999988775 79999999986     33 356899


Q ss_pred             EEEEeCCC-Cch--hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPD-PHF--KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~-~~~--~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|++.+.. .+.  .+.        ..+|++++++|||||.++|
T Consensus       108 ~I~~~~~~~~~~~~~~~--------~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         108 AVTMFFSTIMYFDEEDL--------RKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             EEEECSSGGGGSCHHHH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             hHhhhhhhhhcCChHHH--------HHHHHHHHHHcCCCcEEEE
Confidence            88775422 111  122        4899999999999999875

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.72  E-value=7.6e-18  Score=141.01  Aligned_cols=101  Identities=16%  Similarity=0.201  Sum_probs=81.8

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +++.+|||||||+|.++..+++++   .+|+|||+|+.|++.|++++...+. +++++++|+.+     ++ .++.||.|
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~-----~~-~~~~fD~i  105 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISN-----LN-INRKFDLI  105 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGG-----CC-CSCCEEEE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccCc-cceeeccchhh-----hc-cccccccc
Confidence            446789999999999999999984   4699999999999999999887775 79999999986     22 35789988


Q ss_pred             EEeCCC----CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPD----PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~----~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.+..    ++.++.        ..++++++++|||||.|+|
T Consensus       106 ~~~~~~~~~~~~~~~~--------~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         106 TCCLDSTNYIIDSDDL--------KKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             EECTTGGGGCCSHHHH--------HHHHHHHHTTEEEEEEEEE
T ss_pred             ceeeeeeeccCCHHHH--------HHHHHHHHHhCCCCeEEEE
Confidence            764321    222222        4899999999999999874

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.72  E-value=2.2e-17  Score=136.62  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=84.5

Q ss_pred             hHHHhcCCCCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhc
Q 026219          116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLV  192 (241)
Q Consensus       116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~  192 (241)
                      +...+.+ ++.+|||||||+|..+..+++..  |+ .+|+|||+|+.|++.|++++++.+. .++++..+|+.+     .
T Consensus        32 ~~~~~~~-~~~~vLDlGCGtG~~~~~l~~~~~~~~-~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~-----~  104 (225)
T d1im8a_          32 LAERFVT-ADSNVYDLGCSRGAATLSARRNINQPN-VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-----V  104 (225)
T ss_dssp             HHHHHCC-TTCEEEEESCTTCHHHHHHHHTCCCSS-CEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT-----C
T ss_pred             HHHHhcC-CCCEEEEeccchhhHHHHHHHhhcCCC-CceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc-----c
Confidence            3344444 36899999999999999999864  56 8999999999999999999887665 468888888865     2


Q ss_pred             cCCCCcEeEEEEeCCCCch--hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          193 SSYPGPLMLVSILCPDPHF--KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       193 ~~~~~~~d~V~~~~~~~~~--~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                        +...+|.++..+...+.  ++.        ..++++++++|||||.+++
T Consensus       105 --~~~~~d~i~~~~~l~~~~~~d~--------~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         105 --EIKNASMVILNFTLQFLPPEDR--------IALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             --CCCSEEEEEEESCGGGSCGGGH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             --ccccceeeEEeeeccccChhhH--------HHHHHHHHHhCCCCceeec
Confidence              24667877766544332  122        4899999999999999875

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=2.3e-17  Score=133.22  Aligned_cols=103  Identities=18%  Similarity=0.291  Sum_probs=85.4

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCc
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ....++.+|||||||+|.+++.+++..   .+|+|+|+++++++.|++|++++++ +|++++++|+.+..     .....
T Consensus        29 l~~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~-----~~~~~  100 (186)
T d1l3ia_          29 AEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL-----CKIPD  100 (186)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH-----TTSCC
T ss_pred             cCCCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc-----cccCC
Confidence            344468999999999999999999863   4799999999999999999999998 58999999997632     23478


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|++..+....           ..+++.+.+.|||||++++
T Consensus       101 ~D~v~~~~~~~~~-----------~~~~~~~~~~LkpgG~lvi  132 (186)
T d1l3ia_         101 IDIAVVGGSGGEL-----------QEILRIIKDKLKPGGRIIV  132 (186)
T ss_dssp             EEEEEESCCTTCH-----------HHHHHHHHHTEEEEEEEEE
T ss_pred             cCEEEEeCccccc-----------hHHHHHHHHHhCcCCEEEE
Confidence            9999877543322           4899999999999998864

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.4e-18  Score=139.71  Aligned_cols=106  Identities=15%  Similarity=0.175  Sum_probs=85.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ..+.+|||||||+|.++..+++.++.  +|+|||+|++|++.|++++...+..+++++++|+.+     ++..+++||.|
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~-----~~~~~~~fD~I  131 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQD-----FTPEPDSYDVI  131 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGG-----CCCCSSCEEEE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccccc-----ccccccccccc
Confidence            34678999999999999998776654  799999999999999999887777789999999987     34457899999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +......+..+..      ..++++++.++|||||.++|
T Consensus       132 ~~~~~l~h~~~~~------~~~~l~~i~~~Lk~~G~~~i  164 (222)
T d2ex4a1         132 WIQWVIGHLTDQH------LAEFLRRCKGSLRPNGIIVI  164 (222)
T ss_dssp             EEESCGGGSCHHH------HHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccccchhhh------hhhHHHHHHHhcCCcceEEE
Confidence            8776543332210      13799999999999999875

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.71  E-value=2.2e-17  Score=134.15  Aligned_cols=102  Identities=15%  Similarity=0.200  Sum_probs=84.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +++|||||||+|..+..+++++   .+|+|+|+|+.|++.+++++++.+++++++...|+.+     .. ++++||.|+.
T Consensus        31 ~grvLDiGcG~G~~~~~la~~g---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~-----~~-~~~~fD~I~~  101 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT-----LT-FDGEYDFILS  101 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTT-----CC-CCCCEEEEEE
T ss_pred             CCcEEEECCCCCHHHHHHHHHh---hhhccccCcHHHHHHHHHHhhhccccchhhhheeccc-----cc-ccccccEEEE
Confidence            4699999999999999999984   5799999999999999999999999999999999976     22 4788999987


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ...-.+....      -..++++++.++|+|||.+++
T Consensus       102 ~~~~~~~~~~------~~~~~l~~~~~~L~pgG~~~~  132 (198)
T d2i6ga1         102 TVVMMFLEAQ------TIPGLIANMQRCTKPGGYNLI  132 (198)
T ss_dssp             ESCGGGSCTT------HHHHHHHHHHHTEEEEEEEEE
T ss_pred             eeeeecCCHH------HHHHHHHHHHHHcCCCcEEEE
Confidence            6543332111      114899999999999998875

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=5.9e-17  Score=138.00  Aligned_cols=100  Identities=19%  Similarity=0.254  Sum_probs=87.7

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHh---CCCCEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQEL---ALSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~---~l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      .++.+|||+|||+|.++..|++.. |+ ++|+++|+++++++.|++|++..   ...|++++++|+.+     .+.++++
T Consensus        95 ~PG~~VLE~G~GsG~lt~~La~~vgp~-G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~-----~~~~~~~  168 (264)
T d1i9ga_          95 FPGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD-----SELPDGS  168 (264)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG-----CCCCTTC
T ss_pred             CCCCEEEecCcCCcHHHHHHHHhhCCC-cEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc-----ccccCCC
Confidence            458999999999999999999984 66 89999999999999999999874   24689999999976     3345789


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||.|+++.|+||             .+++++.++|||||.+.+
T Consensus       169 fDaV~ldlp~P~-------------~~l~~~~~~LkpGG~lv~  198 (264)
T d1i9ga_         169 VDRAVLDMLAPW-------------EVLDAVSRLLVAGGVLMV  198 (264)
T ss_dssp             EEEEEEESSCGG-------------GGHHHHHHHEEEEEEEEE
T ss_pred             cceEEEecCCHH-------------HHHHHHHhccCCCCEEEE
Confidence            999999999997             788999999999999864

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.69  E-value=1.1e-16  Score=129.87  Aligned_cols=108  Identities=18%  Similarity=0.138  Sum_probs=86.4

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~  195 (241)
                      +.+...++.+|||||||+|.+++.+++..+   +|+|+|+|+.+++.|+++++.++++  +++++.+|..+.    +  .
T Consensus        46 ~~l~~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~----~--~  116 (194)
T d1dusa_          46 ENVVVDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN----V--K  116 (194)
T ss_dssp             HHCCCCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT----C--T
T ss_pred             HhCCcCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh----h--c
Confidence            344455678999999999999999998754   5999999999999999999998875  489999998652    2  3


Q ss_pred             CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..||.|+.+.+-.+..+       ..+.+++++.++|||||.++|
T Consensus       117 ~~~fD~Ii~~~p~~~~~~-------~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         117 DRKYNKIITNPPIRAGKE-------VLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             TSCEEEEEECCCSTTCHH-------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCceEEEEcccEEecch-------hhhhHHHHHHHhcCcCcEEEE
Confidence            678999988755322211       225899999999999998864

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.68  E-value=7.2e-17  Score=138.32  Aligned_cols=103  Identities=19%  Similarity=0.289  Sum_probs=85.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +..+|||||||+|.++..+++..+...+|+|+|+|+.+++.|+++.+..+. +++|+++|+.+     .+ ++.+||.|+
T Consensus        27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~-----~~-~~~~fD~v~   99 (281)
T d2gh1a1          27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATE-----IE-LNDKYDIAI   99 (281)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTT-----CC-CSSCEEEEE
T ss_pred             CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-ccccccccccc-----cc-ccCCceEEE
Confidence            457899999999999999999877537899999999999999999877664 79999999976     23 356799998


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ....-.|..+.        ..+++++.++|||||.+++
T Consensus       100 ~~~~l~~~~d~--------~~~l~~~~~~LkpgG~lii  129 (281)
T d2gh1a1         100 CHAFLLHMTTP--------ETMLQKMIHSVKKGGKIIC  129 (281)
T ss_dssp             EESCGGGCSSH--------HHHHHHHHHTEEEEEEEEE
T ss_pred             EehhhhcCCCH--------HHHHHHHHHHcCcCcEEEE
Confidence            77655444443        4899999999999998874

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=5.7e-17  Score=138.14  Aligned_cols=93  Identities=18%  Similarity=0.268  Sum_probs=78.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||||||+|.++..+++.+++ .+++|||+|+.|++.|+++     .+++.++++|+.+     ++..+++||.|
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~-~~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~-----l~~~~~sfD~v  151 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPE-ITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHR-----LPFSDTSMDAI  151 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTT-SEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTS-----CSBCTTCEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCC-CEEEEecchHhhhhhhhcc-----cccccceeeehhh-----ccCCCCCEEEE
Confidence            45789999999999999999999988 8999999999999998764     3689999999987     45568999999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..+...               .++++.|+|||||.+++
T Consensus       152 ~~~~~~~---------------~~~e~~rvLkpgG~l~~  175 (268)
T d1p91a_         152 IRIYAPC---------------KAEELARVVKPGGWVIT  175 (268)
T ss_dssp             EEESCCC---------------CHHHHHHHEEEEEEEEE
T ss_pred             eecCCHH---------------HHHHHHHHhCCCcEEEE
Confidence            8765432               25679999999999875

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.67  E-value=1.2e-16  Score=134.51  Aligned_cols=108  Identities=17%  Similarity=0.184  Sum_probs=83.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|..+..+++...  .+|+|||+|++|++.|+++.+..+.. ++.++++|+...    ....+.+||+|
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~----~~~~~~~fD~V   97 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR----HMDLGKEFDVI   97 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS----CCCCSSCEEEE
T ss_pred             CcCEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhh----cccccccceEE
Confidence            468999999999999999988754  37999999999999999988776653 799999999641    11135689999


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.+.-.+.....    .-...+++++.++|||||.+++
T Consensus        98 ~~~~~l~~~~~~~----~~~~~~l~~i~~~Lk~gG~~i~  132 (252)
T d1ri5a_          98 SSQFSFHYAFSTS----ESLDIAQRNIARHLRPGGYFIM  132 (252)
T ss_dssp             EEESCGGGGGSSH----HHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEcceeeecCCCH----HHHHHHHHHHhceeCCCCEEEE
Confidence            8877554331110    0124899999999999999874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.66  E-value=3.3e-16  Score=129.02  Aligned_cols=104  Identities=20%  Similarity=0.149  Sum_probs=80.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||||||+|.++..+++..++ ++|+|||+|+.|++.+++++++.  .|+.++.+|+.... . .......+|.+
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~--~ni~~i~~d~~~~~-~-~~~~~~~vd~v  129 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPW-K-YSGIVEKVDLI  129 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGG-G-TTTTCCCEEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhcc--CCceEEEeeccCcc-c-cccccceEEEE
Confidence            35799999999999999999999988 79999999999999999998765  58999999997621 1 11112345655


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..++.++  +.        +.+++++.++|||||.+++
T Consensus       130 ~~~~~~~~--~~--------~~~l~~~~~~LkpgG~l~i  158 (209)
T d1nt2a_         130 YQDIAQKN--QI--------EILKANAEFFLKEKGEVVI  158 (209)
T ss_dssp             EECCCSTT--HH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EecccChh--hH--------HHHHHHHHHHhccCCeEEE
Confidence            54444332  22        4899999999999999864

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.66  E-value=1.4e-16  Score=134.61  Aligned_cols=99  Identities=19%  Similarity=0.203  Sum_probs=86.4

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhC-CCCEEEEEccccchHHhhccCCCCcEe
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELA-LSNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~-l~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      .++.+|||+|||+|.++..+++.. +. +.|+++|+++++++.|++++++.+ ..|+++.++|+.+.    +  ++..||
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~----~--~~~~fD  156 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF----I--SDQMYD  156 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC----C--CSCCEE
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc----c--ccceee
Confidence            357899999999999999999874 56 899999999999999999998764 47899999999762    2  467899


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+++.++||             .+++++.++|||||++++
T Consensus       157 ~V~ld~p~p~-------------~~l~~~~~~LKpGG~lv~  184 (250)
T d1yb2a1         157 AVIADIPDPW-------------NHVQKIASMMKPGSVATF  184 (250)
T ss_dssp             EEEECCSCGG-------------GSHHHHHHTEEEEEEEEE
T ss_pred             eeeecCCchH-------------HHHHHHHHhcCCCceEEE
Confidence            9999999886             778999999999999864

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=1.5e-16  Score=134.81  Aligned_cols=105  Identities=21%  Similarity=0.270  Sum_probs=83.7

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      +|.....+ ++.+|||+|||+|.+++.+++.  + .+|+|+|+|+.|++.|++|++.+++ +++++++|+.+.    .  
T Consensus       112 ~~l~~~~~-~g~~VLDiGcGsG~l~i~aa~~--g-~~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~~----~--  180 (254)
T d2nxca1         112 KALARHLR-PGDKVLDLGTGSGVLAIAAEKL--G-GKALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEAA----L--  180 (254)
T ss_dssp             HHHHHHCC-TTCEEEEETCTTSHHHHHHHHT--T-CEEEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHHH----G--
T ss_pred             HHHHhhcC-ccCEEEEcccchhHHHHHHHhc--C-CEEEEEECChHHHHHHHHHHHHcCC-ceeEEecccccc----c--
Confidence            44444444 4789999999999999988875  4 5799999999999999999999987 468899988642    2  


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++++||.|+.+.....           ...+++++.++|||||++++
T Consensus       181 ~~~~fD~V~ani~~~~-----------l~~l~~~~~~~LkpGG~lil  216 (254)
T d2nxca1         181 PFGPFDLLVANLYAEL-----------HAALAPRYREALVPGGRALL  216 (254)
T ss_dssp             GGCCEEEEEEECCHHH-----------HHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccchhhhcccccc-----------HHHHHHHHHHhcCCCcEEEE
Confidence            2578999988754321           14889999999999999875

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=2.1e-16  Score=130.46  Aligned_cols=107  Identities=18%  Similarity=0.232  Sum_probs=85.1

Q ss_pred             hHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCC
Q 026219          116 WSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       116 ~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      +.+...-.++.+|||||||+|.++..+++.....+.|+++|+++++++.|+++++..++.|+.++++|+.+.+     ..
T Consensus        67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~-----~~  141 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV-----PE  141 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-----GG
T ss_pred             HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc-----cc
Confidence            3444444568999999999999999999976433799999999999999999999999999999999987631     12


Q ss_pred             CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.||.|++...-++.              .+++.+.|||||++++
T Consensus       142 ~~~fD~I~~~~~~~~~--------------p~~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         142 FSPYDVIFVTVGVDEV--------------PETWFTQLKEGGRVIV  173 (213)
T ss_dssp             GCCEEEEEECSBBSCC--------------CHHHHHHEEEEEEEEE
T ss_pred             ccchhhhhhhccHHHh--------------HHHHHHhcCCCcEEEE
Confidence            5789999887644322              2346788999999874

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.64  E-value=2.8e-16  Score=125.44  Aligned_cols=112  Identities=10%  Similarity=-0.005  Sum_probs=80.6

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC------------CCEEEEEccc
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL------------SNIHFLFANA  184 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l------------~ni~~~~~D~  184 (241)
                      ...+..+++.+|||+|||+|..+..|+++  + ..|+|+|+|++|++.|+++++..+.            .+++++.+|+
T Consensus        13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~--G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQ--G-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHH--C-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHcCCCCCCEEEEecCcCCHHHHHHHHc--C-CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            34445556899999999999999999998  5 6899999999999999998754321            2356778888


Q ss_pred             cchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          185 SVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       185 ~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+....    ....+|.|+......+....      ....++++++++|||||.+++
T Consensus        90 ~~l~~~----~~~~~D~i~~~~~l~~l~~~------~~~~~~~~i~~~LkpgG~l~l  136 (201)
T d1pjza_          90 FALTAR----DIGHCAAFYDRAAMIALPAD------MRERYVQHLEALMPQACSGLL  136 (201)
T ss_dssp             SSSTHH----HHHSEEEEEEESCGGGSCHH------HHHHHHHHHHHHSCSEEEEEE
T ss_pred             cccccc----cccceeEEEEEeeeEecchh------hhHHHHHHHHHhcCCCcEEEE
Confidence            653211    13568887665433222110      114899999999999998764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=4.4e-16  Score=132.77  Aligned_cols=99  Identities=23%  Similarity=0.281  Sum_probs=86.7

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEe
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      .++.+|||+|||+|.++..+|+.. |. ++|+++|+++++++.|++++++.++ .++.+...|+.+      ......+|
T Consensus       102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~-G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~------~~~~~~~D  174 (266)
T d1o54a_         102 KEGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE------GFDEKDVD  174 (266)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG------CCSCCSEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc------ccccccee
Confidence            458999999999999999999986 55 8999999999999999999999887 579999999754      22357799


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+++.++||             .+++++.++|||||++++
T Consensus       175 ~V~~d~p~p~-------------~~l~~~~~~LKpGG~lv~  202 (266)
T d1o54a_         175 ALFLDVPDPW-------------NYIDKCWEALKGGGRFAT  202 (266)
T ss_dssp             EEEECCSCGG-------------GTHHHHHHHEEEEEEEEE
T ss_pred             eeEecCCCHH-------------HHHHHHHhhcCCCCEEEE
Confidence            9999999885             789999999999999864

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=1.7e-16  Score=131.30  Aligned_cols=96  Identities=18%  Similarity=0.228  Sum_probs=74.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||||||+|.++..+++.  + .+|+|||+|+.|++.|+++    +..  .++.+|+.+     ++.++++||.|+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~--~-~~v~giD~s~~~l~~a~~~----~~~--~~~~~~~~~-----l~~~~~~fD~ii  107 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQER--G-FEVVLVDPSKEMLEVAREK----GVK--NVVEAKAED-----LPFPSGAFEAVL  107 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--T-CEEEEEESCHHHHHHHHHH----TCS--CEEECCTTS-----CCSCTTCEEEEE
T ss_pred             CCCEEEEECCCCchhccccccc--c-eEEEEeecccccccccccc----ccc--ccccccccc-----ccccccccccee
Confidence            4679999999999999999986  4 5899999999999999874    333  356788876     444578999887


Q ss_pred             EeCC-CCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCP-DPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~-~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .... ..|..+.        ..+|+++.++|||||.++|
T Consensus       108 ~~~~~~~~~~d~--------~~~l~~i~r~Lk~gG~~ii  138 (246)
T d2avna1         108 ALGDVLSYVENK--------DKAFSEIRRVLVPDGLLIA  138 (246)
T ss_dssp             ECSSHHHHCSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             eecchhhhhhhH--------HHHHHHHHhhcCcCcEEEE
Confidence            5432 1222222        4899999999999999875

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=1.1e-15  Score=131.18  Aligned_cols=103  Identities=16%  Similarity=0.216  Sum_probs=81.5

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||||||+|.++..++++++  ++|+|||+|+++++.|++++++.++. ++.+...|..+        ++++||.
T Consensus        51 ~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~--------~~~~fD~  120 (280)
T d2fk8a1          51 KPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED--------FAEPVDR  120 (280)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG--------CCCCCSE
T ss_pred             CCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh--------hccchhh
Confidence            4578999999999999999998864  58999999999999999999988874 57788777754        3578898


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+..-.-.+...+      -.+.+++++.++|||||++++
T Consensus       121 i~si~~~eh~~~~------~~~~~f~~i~~~LkpgG~~~i  154 (280)
T d2fk8a1         121 IVSIEAFEHFGHE------NYDDFFKRCFNIMPADGRMTV  154 (280)
T ss_dssp             EEEESCGGGTCGG------GHHHHHHHHHHHSCTTCEEEE
T ss_pred             hhHhhHHHHhhhh------hHHHHHHHHHhccCCCceEEE
Confidence            8654322222111      125899999999999999975

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.63  E-value=3.7e-16  Score=129.29  Aligned_cols=96  Identities=17%  Similarity=0.270  Sum_probs=77.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +.+|||||||+|.++..+++++   .+|+|||+|+++++.|+++.    ..++.++.+|+.+     .. +++.||.|++
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~----~~~~~~~~~~~~~-----~~-~~~~fD~I~~   87 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRL----KDGITYIHSRFED-----AQ-LPRRYDNIVL   87 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHS----CSCEEEEESCGGG-----CC-CSSCEEEEEE
T ss_pred             CCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhccc----ccccccccccccc-----cc-cccccccccc
Confidence            5789999999999999998874   35999999999999998753    2479999999875     22 4688999987


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHH-hccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSII-DYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~-r~LkpGG~l~~  241 (241)
                      ...-.|..++        ..+++++. ++|||||.++|
T Consensus        88 ~~vleh~~d~--------~~~l~~i~~~~Lk~gG~l~i  117 (225)
T d2p7ia1          88 THVLEHIDDP--------VALLKRINDDWLAEGGRLFL  117 (225)
T ss_dssp             ESCGGGCSSH--------HHHHHHHHHTTEEEEEEEEE
T ss_pred             cceeEecCCH--------HHHHHHHHHHhcCCCceEEE
Confidence            6655454444        38899998 89999999975

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.62  E-value=6.8e-16  Score=130.47  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=84.6

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      +.+......+|||+|||+|.++..++.++..  .|+|||+|+.|++.|+++..  +.++++++++|+.+     ++..++
T Consensus        87 ~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~-----~~~~~~  157 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELA--GMPVGKFILASMET-----ATLPPN  157 (254)
T ss_dssp             HTSTTCCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGG-----CCCCSS
T ss_pred             hhCCCCCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhcccc--ccccceeEEccccc-----cccCCC
Confidence            3344445689999999999999998876544  79999999999999998764  33568999999976     343568


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .||+|++...-.|..+.      -...+++++.++|||||.|+|
T Consensus       158 ~fD~I~~~~vl~hl~d~------d~~~~l~~~~~~LkpgG~iii  195 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDA------DFVKFFKHCQQALTPNGYIFF  195 (254)
T ss_dssp             CEEEEEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccceEEeeccccccchh------hhHHHHHHHHHhcCCCcEEEE
Confidence            89999887655443221      013889999999999999885

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=1.7e-15  Score=130.65  Aligned_cols=112  Identities=13%  Similarity=0.131  Sum_probs=84.6

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCc
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ....++.+|||||||+|.++..++++++  ++|+||++|+++++.++++++..++. .+.+...|...        ++++
T Consensus        57 l~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~--------~~~~  126 (291)
T d1kpia_          57 LNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE--------FDEP  126 (291)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--------CCCC
T ss_pred             cCCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc--------cccc
Confidence            3345689999999999999999998875  58999999999999999999998885 58888887643        3688


Q ss_pred             EeEEEEeCCCCchhhh-hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKK-HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~-~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||.|+..-.-.|+.+. .......++.+++++.++|||||++++
T Consensus       127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l  170 (291)
T d1kpia_         127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLL  170 (291)
T ss_dssp             CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEE
T ss_pred             cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEE
Confidence            9988653222122110 001112346999999999999999875

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=1.6e-15  Score=130.37  Aligned_cols=103  Identities=16%  Similarity=0.192  Sum_probs=82.8

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      .++.+|||||||+|..++.+++.+ + ++|+||++|+++++.|++++++.|+ .++++..+|..+     +   ++.+|.
T Consensus        61 ~~G~~VLDiGCG~G~~a~~~a~~~-g-~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~-----~---~~~fD~  130 (285)
T d1kpga_          61 QPGMTLLDVGCGWGATMMRAVEKY-D-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-----F---DEPVDR  130 (285)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-C-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-----C---CCCCSE
T ss_pred             CCCCEEEEecCcchHHHHHHHhcC-C-cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-----c---cccccc
Confidence            468999999999999999999987 4 6999999999999999999988877 579999999865     2   577887


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+..-...+...      .-.+.+++++.++|||||++++
T Consensus       131 i~si~~~eh~~~------~~~~~~~~~~~r~LkpgG~~~l  164 (285)
T d1kpga_         131 IVSIGAFEHFGH------ERYDAFFSLAHRLLPADGVMLL  164 (285)
T ss_dssp             EEEESCGGGTCT------TTHHHHHHHHHHHSCTTCEEEE
T ss_pred             eeeehhhhhcCc------hhHHHHHHHHHhhcCCCCcEEE
Confidence            765432222210      1125899999999999999874

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.61  E-value=2.9e-15  Score=126.17  Aligned_cols=111  Identities=18%  Similarity=0.269  Sum_probs=87.2

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhcc
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~  193 (241)
                      .+.+.+.-....+|||||||+|.++..+++++|+ ..++++|+ +++++.+++++.+.++ .+++++.+|+.+.      
T Consensus        71 ~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~------  142 (253)
T d1tw3a2          71 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPH-VSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP------  142 (253)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC------
T ss_pred             HHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcce-eEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh------
Confidence            3444444444679999999999999999999999 89999998 6799999999998887 5799999998651      


Q ss_pred             CCCCcEeEEEEeCCCCc-hhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPH-FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~-~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       .+..+|+|++.....+ .+..       ...+|++++++|||||+|+|
T Consensus       143 -~~~~~D~v~~~~vlh~~~d~~-------~~~~L~~~~~~LkPGG~l~i  183 (253)
T d1tw3a2         143 -LPRKADAIILSFVLLNWPDHD-------AVRILTRCAEALEPGGRILI  183 (253)
T ss_dssp             -CSSCEEEEEEESCGGGSCHHH-------HHHHHHHHHHTEEEEEEEEE
T ss_pred             -cccchhheeeccccccCCchh-------hHHHHHHHHHhcCCCcEEEE
Confidence             2467898877654322 2111       13789999999999999875

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.61  E-value=1.4e-15  Score=126.92  Aligned_cols=102  Identities=13%  Similarity=0.074  Sum_probs=78.0

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEe--
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLM--  200 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d--  200 (241)
                      .++.+|||||||+|.++..+++..|+ +.|+|||+|+.|++.++++++.  .+|+..+.+|+..... .   .+..+|  
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~-g~V~aVDiS~~~i~~a~~~a~~--~~ni~~i~~d~~~~~~-~---~~~~~~v~  145 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAE--RENIIPILGDANKPQE-Y---ANIVEKVD  145 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHTTT--CTTEEEEECCTTCGGG-G---TTTCCCEE
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhh--hcccceEEEeeccCcc-c---ccccceeE
Confidence            35789999999999999999999888 8999999999999999887653  3688889999876321 1   233334  


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++..+.  ++.+.        +.+++++.+.|||||.+++
T Consensus       146 ~i~~~~~--~~~~~--------~~~l~~~~r~LKpgG~~~i  176 (230)
T d1g8sa_         146 VIYEDVA--QPNQA--------EILIKNAKWFLKKGGYGMI  176 (230)
T ss_dssp             EEEECCC--STTHH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             Eeecccc--chHHH--------HHHHHHHHHhcccCceEEE
Confidence            3333333  22222        4889999999999998874

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=8.1e-16  Score=127.86  Aligned_cols=110  Identities=10%  Similarity=-0.005  Sum_probs=81.4

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +++.+|||||||+|..+..+++..+  .+++|||+|+.+++.|+++.+..+ .++.++.+|+.....   ..++++||.|
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~fD~i  125 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP---TLPDGHFDGI  125 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG---GSCTTCEEEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcc-ccccccccccccccc---ccccccccce
Confidence            4578999999999999999998654  479999999999999999886554 367888888865322   2346889988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.......   ...+......++++++|+|||||+|++
T Consensus       126 ~fD~~~~~~---~~~~~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         126 LYDTYPLSE---ETWHTHQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             EECCCCCBG---GGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             eeccccccc---ccccccCHHHHHHHHHHHcCCCcEEEE
Confidence            754322111   011112235899999999999999864

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1e-15  Score=133.90  Aligned_cols=105  Identities=18%  Similarity=0.233  Sum_probs=83.9

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhC-----------CCCEEEEEccccch
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELA-----------LSNIHFLFANASVS  187 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~-----------l~ni~~~~~D~~~~  187 (241)
                      ..-.++.+|||+|||+|.++..||+.. ++ ++|+++|+++++++.|++|+++.+           ..|+.+.++|+.+.
T Consensus        94 l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~-G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~  172 (324)
T d2b25a1          94 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA  172 (324)
T ss_dssp             HTCCTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred             hCCCCCCEEEEecccccHHHHHHHHHhCCC-cEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence            333458999999999999999999975 55 899999999999999999998642           25899999999763


Q ss_pred             HHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          188 FKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       188 ~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..   ...+..||.|++..|+||             .++.++.++|||||.+++
T Consensus       173 ~~---~~~~~~fD~V~LD~p~P~-------------~~l~~~~~~LKpGG~lv~  210 (324)
T d2b25a1         173 TE---DIKSLTFDAVALDMLNPH-------------VTLPVFYPHLKHGGVCAV  210 (324)
T ss_dssp             C----------EEEEEECSSSTT-------------TTHHHHGGGEEEEEEEEE
T ss_pred             cc---ccCCCCcceEeecCcCHH-------------HHHHHHHHhccCCCEEEE
Confidence            22   223578999999989886             678999999999999864

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=1.5e-15  Score=123.50  Aligned_cols=90  Identities=18%  Similarity=0.214  Sum_probs=73.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..+|||||||+|.++..++       +++|||+|++|++.|++       +++.++++|+.+     ++.++++||.|+.
T Consensus        37 ~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~-------~~~~~~~~d~~~-----l~~~~~~fD~I~~   97 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARK-------RGVFVLKGTAEN-----LPLKDESFDFALM   97 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHH-------TTCEEEECBTTB-----CCSCTTCEEEEEE
T ss_pred             CCeEEEECCCCcccccccc-------eEEEEeCChhhcccccc-------cccccccccccc-----ccccccccccccc
Confidence            4689999999999887762       36899999999999876       368999999986     4446789999988


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ...-.|..+.        ..+++++.++|+|||.++|
T Consensus        98 ~~~l~h~~d~--------~~~l~~~~~~L~pgG~l~i  126 (208)
T d1vlma_          98 VTTICFVDDP--------ERALKEAYRILKKGGYLIV  126 (208)
T ss_dssp             ESCGGGSSCH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             cccccccccc--------ccchhhhhhcCCCCceEEE
Confidence            7655444333        4899999999999999875

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=6.4e-15  Score=125.87  Aligned_cols=112  Identities=19%  Similarity=0.234  Sum_probs=90.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+|||+|..++.++..+|+ .+|+|+|+|+.+++.|++|+++++++|++++++|..+.    .  ++..||+|
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~----~--~~~~fDlI  179 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA----L--AGQQFAMI  179 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG----G--TTCCEEEE
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc----c--CCCceeEE
Confidence            34678999999999999999999998 89999999999999999999999998999999998752    1  35689999


Q ss_pred             EEeCCCCchh-------hhhh----------hcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFK-------KKHH----------KRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~-------~~~~----------~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.+.|--...       ...+          ....+.+.+++.+.+.|+|||.+++
T Consensus       180 vsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l  235 (274)
T d2b3ta1         180 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL  235 (274)
T ss_dssp             EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence            8885531000       0001          1223567899999999999999975

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.1e-15  Score=123.29  Aligned_cols=112  Identities=13%  Similarity=0.000  Sum_probs=81.8

Q ss_pred             hhHH-HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC-----------------CCC
Q 026219          115 DWSE-VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA-----------------LSN  176 (241)
Q Consensus       115 ~~~~-~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~-----------------l~n  176 (241)
                      ++.. ....+++.+|||+|||+|..+..|+++  + .+|+|||+|+.+++.|+++....+                 ..+
T Consensus        35 ~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~--G-~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (229)
T d2bzga1          35 KHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR--G-HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN  111 (229)
T ss_dssp             HHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--T-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC--C-CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence            4443 344456789999999999999999997  4 689999999999999988654211                 136


Q ss_pred             EEEEEccccchHHhhccCCCCcEeEEEEeCCCCc--hhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          177 IHFLFANASVSFKQLVSSYPGPLMLVSILCPDPH--FKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       177 i~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~--~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++++++|+.+.    ....++.+|.|+......+  +..        .+.+++++.++|||||++++
T Consensus       112 v~~~~~d~~~l----~~~~~~~fd~i~~~~~l~~~~~~~--------r~~~~~~~~~~LkpgG~~~l  166 (229)
T d2bzga1         112 ISLYCCSIFDL----PRTNIGKFDMIWDRGALVAINPGD--------RKCYADTMFSLLGKKFQYLL  166 (229)
T ss_dssp             EEEEESCGGGG----GGSCCCCEEEEEESSSTTTSCGGG--------HHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEEcchhhc----cccccCceeEEEEEEEEEeccchh--------hHHHHHHHHhhcCCcceEEE
Confidence            88999998762    2224678998864332211  122        25899999999999998764

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1e-14  Score=125.01  Aligned_cols=113  Identities=16%  Similarity=0.075  Sum_probs=77.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC----CEEEEEccccchHHhhccCCCCc
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS----NIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~----ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ..+.+|||||||+|.++..|+++  + .+|+|+|+|++|++.|+++....+..    +..+..+|.... +...+ +...
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~--g-~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~  129 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEE--G-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL-DKDVP-AGDG  129 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH-HHHSC-CTTC
T ss_pred             cCCCEEEEecCCCcHHHHHHHHc--C-CeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc-ccccC-CCCC
Confidence            34578999999999999999997  4 57999999999999999998776543    344555665432 22121 3467


Q ss_pred             EeEEEEeCC-CCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCP-DPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~-~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ||.|++.+. ..+..... ....-...+|++++++|||||+|+|
T Consensus       130 fd~v~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         130 FDAVICLGNSFAHLPDSK-GDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             EEEEEECSSCGGGSCCTT-SSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ceEEEEecCchhhcCCcc-cChHHHHHHHHHHHHHcCcCcEEEE
Confidence            998875431 11111000 0000124899999999999999875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.8e-15  Score=122.21  Aligned_cols=98  Identities=21%  Similarity=0.388  Sum_probs=78.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCC-----CCEEEEEccccchHHhhccCCCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELAL-----SNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l-----~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      ++.+|||||||+|..+..+++.. +. +.|+|+|+++++++.|++++++.++     .++.++.+|+.+..     ..++
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~-g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~-----~~~~  149 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-----AEEA  149 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-----GGGC
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCC-ceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc-----chhh
Confidence            47899999999999999999875 45 7999999999999999999987653     47899999997632     1257


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .||.|++....++              +.+++.+.|||||++++
T Consensus       150 ~fD~I~~~~~~~~--------------ip~~l~~~LkpGG~LV~  179 (224)
T d1i1na_         150 PYDAIHVGAAAPV--------------VPQALIDQLKPGGRLIL  179 (224)
T ss_dssp             CEEEEEECSBBSS--------------CCHHHHHTEEEEEEEEE
T ss_pred             hhhhhhhhcchhh--------------cCHHHHhhcCCCcEEEE
Confidence            8999988765432              22357889999999874

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.54  E-value=3.6e-14  Score=119.81  Aligned_cols=111  Identities=17%  Similarity=0.212  Sum_probs=86.1

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhcc
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~  193 (241)
                      .+.+.+.-....+|||||||+|.++..+++++|+ .+++++|+ +++++.+++++++.++ .++.++.+|..+      +
T Consensus        72 ~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~------~  143 (256)
T d1qzza2          72 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPH-LRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK------P  143 (256)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS------C
T ss_pred             HHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcC-cEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc------c
Confidence            3444433234578999999999999999999999 89999998 7899999999988887 469999999864      1


Q ss_pred             CCCCcEeEEEEeCCCC-chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDP-HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~-~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       .+..+|+|++..... |.++.       ...+|+++++.|||||+|+|
T Consensus       144 -~p~~~D~v~~~~vLh~~~d~~-------~~~lL~~i~~~LkpgG~llI  184 (256)
T d1qzza2         144 -LPVTADVVLLSFVLLNWSDED-------ALTILRGCVRALEPGGRLLV  184 (256)
T ss_dssp             -CSCCEEEEEEESCGGGSCHHH-------HHHHHHHHHHHEEEEEEEEE
T ss_pred             -ccccchhhhccccccccCcHH-------HHHHHHHHHhhcCCcceeEE
Confidence             245689887765432 22211       14889999999999998875

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=1.9e-14  Score=119.74  Aligned_cols=103  Identities=18%  Similarity=0.208  Sum_probs=81.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN-PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~-p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.++.++++.. +. +.|+|+|+|+.|++.++++++.  ..|+..+..|+.... . .......+|.|
T Consensus        73 pG~~VLDlGaGsG~~t~~la~~VG~~-G~V~aVD~s~~~l~~a~~~a~~--~~~~~~i~~d~~~~~-~-~~~~~~~vD~i  147 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEE--RRNIVPILGDATKPE-E-YRALVPKVDVI  147 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTTCGG-G-GTTTCCCEEEE
T ss_pred             CCCEEEEeccCCCHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHHh--cCCceEEEEECCCcc-c-ccccccceEEE
Confidence            58999999999999999999986 45 8999999999999999988754  357888889886521 1 22234678888


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..++.+.  +.        +.+++++.+.|||||.+++
T Consensus       148 ~~d~~~~~--~~--------~~~l~~~~~~LkpgG~lvi  176 (227)
T d1g8aa_         148 FEDVAQPT--QA--------KILIDNAEVYLKRGGYGMI  176 (227)
T ss_dssp             EECCCSTT--HH--------HHHHHHHHHHEEEEEEEEE
T ss_pred             EEEccccc--hH--------HHHHHHHHHhcccCCeEEE
Confidence            77665542  22        4899999999999998864

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3e-14  Score=124.56  Aligned_cols=112  Identities=15%  Similarity=0.100  Sum_probs=80.4

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-------C--CCCEEEEEccccch
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-------A--LSNIHFLFANASVS  187 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-------~--l~ni~~~~~D~~~~  187 (241)
                      .+.....++.+|||||||+|..+..+++.++. .+++|||+|+++++.|+++.++.       |  ..+++++++|+.+.
T Consensus       144 ~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~-~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~  222 (328)
T d1nw3a_         144 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATNC-KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE  222 (328)
T ss_dssp             HHHSCCCTTCEEEEETCTTSHHHHHHHHHCCC-SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH
T ss_pred             HHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc
Confidence            33444445789999999999999999999887 78999999999999998876652       2  35799999999862


Q ss_pred             HHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          188 FKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       188 ~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       +.....  ...|+|+++....+ .+.        ...++++++.|||||+|+.
T Consensus       223 -~~~~~~--~~advi~~~~~~f~-~~~--------~~~l~e~~r~LKpGg~iv~  264 (328)
T d1nw3a_         223 -EWRERI--ANTSVIFVNNFAFG-PEV--------DHQLKERFANMKEGGRIVS  264 (328)
T ss_dssp             -HHHHHH--HHCSEEEECCTTTC-HHH--------HHHHHHHHTTCCTTCEEEE
T ss_pred             -cccccc--CcceEEEEcceecc-hHH--------HHHHHHHHHhCCCCcEEEE
Confidence             111000  11355555432211 111        3789999999999999873

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.50  E-value=3.8e-14  Score=123.44  Aligned_cols=114  Identities=22%  Similarity=0.122  Sum_probs=88.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.+++.+++.  . .+|+++|+|+.+++.|++|++.+|+++++++++|+.+...... .....||.|+
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~-~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~-~~~~~fD~Vi  220 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--F-REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLE-KEGERFDLVV  220 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--E-EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHH-HTTCCEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--C-CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhH-hhhcCCCEEE
Confidence            4789999999999999998875  3 5799999999999999999999999999999999987654432 2357899999


Q ss_pred             EeCCCCchhh-hhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKK-KHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~-~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +..|.-.... ....-...+..+++.+.++|||||.|++
T Consensus       221 ~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~  259 (318)
T d1wxxa2         221 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILAT  259 (318)
T ss_dssp             ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            8865311100 0000111345789999999999999864

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.49  E-value=8.2e-14  Score=121.57  Aligned_cols=123  Identities=13%  Similarity=0.085  Sum_probs=91.6

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhcc
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVS  193 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~  193 (241)
                      .|...... ++.+|||+|||+|.+++.++....  .+|+++|+|+.+++.|++|++.+|+ .+++++++|+.+.+.... 
T Consensus       137 ~~~~~~~~-~g~~VLDl~~g~G~~si~~a~~ga--~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~-  212 (324)
T d2as0a2         137 LALEKWVQ-PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ-  212 (324)
T ss_dssp             HHHGGGCC-TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH-
T ss_pred             HHHHhhcC-CCCeeecccCcccchhhhhhhcCC--cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHH-
Confidence            34444333 378999999999999999998754  3899999999999999999999998 479999999987654432 


Q ss_pred             CCCCcEeEEEEeCCCCch-hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          194 SYPGPLMLVSILCPDPHF-KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~~~~-~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .....||.|++..|.... ++......-.+..++..+.++|+|||.|++
T Consensus       213 ~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~  261 (324)
T d2as0a2         213 KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT  261 (324)
T ss_dssp             HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence            235789999987664211 111111111346789999999999999864

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=1.4e-13  Score=119.98  Aligned_cols=104  Identities=14%  Similarity=0.254  Sum_probs=80.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.+++.+++....  .|+|+|.|+ +++.|+++.++++. .++.++++|+.+     .+.++.++|.|
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~-----l~~~~~~~D~i  109 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLED-----VHLPFPKVDII  109 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCS--EEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT-----SCCSSSCEEEE
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhh-----ccCcccceeEE
Confidence            3689999999999999999887554  899999997 67889999888887 479999999986     34456889988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +.........     .....+.++.+..++|||||.++
T Consensus       110 ~se~~~~~~~-----~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         110 ISEWMGYFLL-----YESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EECCCBTTBS-----TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEecceeec-----cchhHHHHHHHHHhccCCCeEEE
Confidence            7643221110     01123588999999999999986

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.5e-13  Score=119.26  Aligned_cols=104  Identities=14%  Similarity=0.201  Sum_probs=79.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.+++.+++..+.  +|+|+|.|+. ...++++++.+++. ++.++.+|+.+     ++.++.++|.|
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~-----~~~~~~~~D~i  104 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEE-----VELPVEKVDII  104 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTT-----CCCSSSCEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHH-----cccccceeEEE
Confidence            3688999999999999999997554  7999999986 46777778888874 69999999987     34456789988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +.........     .....+.++..+.++|||||.++
T Consensus       105 vs~~~~~~l~-----~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         105 ISEWMGYCLF-----YESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             EECCCBBTBT-----BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeeeec-----cHHHHHHHHHHHHhcCCCCeEEE
Confidence            7643221110     11123689999999999999986

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.46  E-value=8.7e-14  Score=117.92  Aligned_cols=98  Identities=9%  Similarity=0.001  Sum_probs=82.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.+++.++++. . ++|+++|+|+++++.+++|++.+++.+ ++++++|+.+.    .  ....+|.|
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~-~-~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~----~--~~~~~D~I  178 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYG-K-AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF----P--GENIADRI  178 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHT-C-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC----C--CCSCEEEE
T ss_pred             CccEEEECcceEcHHHHHHHHhC-C-cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHh----c--cCCCCCEE
Confidence            37899999999999999999874 3 589999999999999999999999965 99999999762    1  24679998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++.|...            ..++..+.++|+|||.+.+
T Consensus       179 i~~~p~~~------------~~~l~~a~~~l~~gG~lh~  205 (260)
T d2frna1         179 LMGYVVRT------------HEFIPKALSIAKDGAIIHY  205 (260)
T ss_dssp             EECCCSSG------------GGGHHHHHHHEEEEEEEEE
T ss_pred             EECCCCch------------HHHHHHHHhhcCCCCEEEE
Confidence            87755321            2788889999999998853

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1e-13  Score=117.56  Aligned_cols=108  Identities=13%  Similarity=0.118  Sum_probs=77.6

Q ss_pred             CcEEEEcCCccHHHHHHHHH----CCC-CcEEEEEeCCHHHHHHHHHHHHHhC-CCCEE--EEEccccchHHhh-ccCCC
Q 026219          126 PLMVDIGSGSGRFLIWLARR----NPD-SGNYLGLEIRQKLVKRAEFWVQELA-LSNIH--FLFANASVSFKQL-VSSYP  196 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~----~p~-~~~v~giDis~~~v~~a~~~~~~~~-l~ni~--~~~~D~~~~~~~~-~~~~~  196 (241)
                      .+|||||||+|.++..+++.    +++ ...++|||+|+.|++.+++++++.. +.++.  +...++.+..... ....+
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL  121 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence            47999999999998877654    333 1468999999999999999876532 34544  4555554322221 22346


Q ss_pred             CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..||.|+....-.|.++.        ..++++++++|+|||.++|
T Consensus       122 ~~fD~I~~~~~l~~~~d~--------~~~l~~l~~~LkpgG~l~i  158 (280)
T d1jqea_         122 QKWDFIHMIQMLYYVKDI--------PATLKFFHSLLGTNAKMLI  158 (280)
T ss_dssp             CCEEEEEEESCGGGCSCH--------HHHHHHHHHTEEEEEEEEE
T ss_pred             CceeEEEEccceecCCCH--------HHHHHHHHhhCCCCCEEEE
Confidence            889999887665555443        4999999999999998875

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.45  E-value=2.1e-13  Score=106.31  Aligned_cols=103  Identities=17%  Similarity=0.082  Sum_probs=81.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||+|||+|.+++..+.+...  +|+++|.++++++.++++++..+.. +++++++|+.+.++.    ...+||.|
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~----~~~~fDiI   87 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC----LTGRFDLV   87 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH----BCSCEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc----ccccccee
Confidence            4789999999999999998887654  8999999999999999999988875 599999999875433    35789988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHH--hccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSII--DYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~--r~LkpGG~l~~  241 (241)
                      ++..|  +....       ....++.+.  ++|+|||.+++
T Consensus        88 f~DPP--y~~~~-------~~~~l~~i~~~~~L~~~g~iii  119 (152)
T d2esra1          88 FLDPP--YAKET-------IVATIEALAAKNLLSEQVMVVC  119 (152)
T ss_dssp             EECCS--SHHHH-------HHHHHHHHHHTTCEEEEEEEEE
T ss_pred             Eechh--hccch-------HHHHHHHHHHCCCcCCCeEEEE
Confidence            87633  22221       135566553  57999999875

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.3e-13  Score=117.63  Aligned_cols=104  Identities=17%  Similarity=0.230  Sum_probs=77.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||||||+|.+++.+++..+.  +|+|+|.|+.+.. +++++++++. .++.++++|+.+     +..++..+|.|
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~-----l~~~~~~~D~I  106 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEE-----VHLPVEKVDVI  106 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTT-----SCCSCSCEEEE
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHH-----hcCccccceEE
Confidence            4689999999999999999998654  8999999998865 5555556655 679999999987     34456889998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      +.........     .....+.++....++|||||+++
T Consensus       107 vse~~~~~~~-----~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         107 ISEWMGYFLL-----FESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             EECCCBTTBT-----TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEeeeeeecc-----cccccHHHHHHHHhcCCCCcEEe
Confidence            7643322110     01123578888889999999986

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=7.4e-13  Score=107.28  Aligned_cols=124  Identities=15%  Similarity=0.175  Sum_probs=92.4

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      +..+.+...++.++||++||+|.++..+++++|+ ++|+|+|++++|++.|+++.+..+ .++.++++++.+........
T Consensus        14 evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~-~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~~~~~~~   91 (192)
T d1m6ya2          14 EVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTL   91 (192)
T ss_dssp             HHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHT
T ss_pred             HHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCC-CeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHHHHHHHc
Confidence            3444455556789999999999999999999998 999999999999999999887665 47999999987632221222


Q ss_pred             CCCcEeEEEEeCCCC--chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDP--HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~--~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ....||.|++.++-.  ..+.. .+........+..+.++|+|||++.+
T Consensus        92 ~~~~vdgIl~DlGvSs~Qld~~-~r~~~~~~~~L~~a~~~Lk~gG~l~i  139 (192)
T d1m6ya2          92 GIEKVDGILMDLGVSTYQLKGE-NRELENLKEFLKKAEDLLNPGGRIVV  139 (192)
T ss_dssp             TCSCEEEEEEECSCCHHHHHTS-HTHHHHHHHHHHHGGGGEEEEEEEEE
T ss_pred             CCCCcceeeeccchhHhhhhhh-hccchhHHHHHHHHHHhcCCCCeeee
Confidence            357899998876532  11111 11222456889999999999999864

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.42  E-value=2.3e-13  Score=112.13  Aligned_cols=106  Identities=19%  Similarity=0.282  Sum_probs=83.2

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      ...+.+...++.+|||||||+|..+..+++...  .+|+++|+++++++.|++++++.+..|+.++++|+.+..+     
T Consensus        69 ~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~-----  141 (215)
T d1jg1a_          69 IMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP-----  141 (215)
T ss_dssp             HHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----
T ss_pred             HHHHhhccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc-----
Confidence            344445445678999999999999999998753  3699999999999999999999999999999999976321     


Q ss_pred             CCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+.||.|++...-+..              -+.+.+.|||||++++
T Consensus       142 ~~~pfD~Iiv~~a~~~i--------------p~~l~~qL~~gGrLv~  174 (215)
T d1jg1a_         142 PKAPYDVIIVTAGAPKI--------------PEPLIEQLKIGGKLII  174 (215)
T ss_dssp             GGCCEEEEEECSBBSSC--------------CHHHHHTEEEEEEEEE
T ss_pred             ccCcceeEEeecccccC--------------CHHHHHhcCCCCEEEE
Confidence            24789999887544321              1225667999999874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.41  E-value=2.8e-13  Score=112.33  Aligned_cols=100  Identities=18%  Similarity=0.315  Sum_probs=76.9

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      +...-.++.+|||||||+|.++..|++..   .+|+++|+++++++.|+++..  ...|+.++.+|....++     ..+
T Consensus        64 ~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~--~~~nv~~~~~d~~~g~~-----~~~  133 (224)
T d1vbfa_          64 DELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLS--YYNNIKLILGDGTLGYE-----EEK  133 (224)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHT--TCSSEEEEESCGGGCCG-----GGC
T ss_pred             HHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHh--cccccccccCchhhcch-----hhh
Confidence            33333457899999999999999999984   479999999999999998765  34799999999875321     147


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .||.|++...-+              .+.+.+.+.|||||++++
T Consensus       134 pfD~Iiv~~a~~--------------~ip~~l~~qLk~GGrLV~  163 (224)
T d1vbfa_         134 PYDRVVVWATAP--------------TLLCKPYEQLKEGGIMIL  163 (224)
T ss_dssp             CEEEEEESSBBS--------------SCCHHHHHTEEEEEEEEE
T ss_pred             hHHHHHhhcchh--------------hhhHHHHHhcCCCCEEEE
Confidence            799988765433              222346788999999874

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=7.7e-13  Score=108.87  Aligned_cols=108  Identities=15%  Similarity=0.123  Sum_probs=84.5

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC-CCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS-YPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~-~~~~~d~V  202 (241)
                      ..+|||||||+|..++.+++..+..++++++|+++++++.|++++++.|+. +++++.+|+.+.++.+... ....||.|
T Consensus        57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i  136 (214)
T d2cl5a1          57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  136 (214)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred             CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccccee
Confidence            378999999999999999998764489999999999999999999999985 6999999998876654332 24679988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++... .   ..+     .....+.+..++|||||.|++
T Consensus       137 fiD~~-~---~~~-----~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         137 FLDHW-K---DRY-----LPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EECSC-G---GGH-----HHHHHHHHHTTCEEEEEEEEE
T ss_pred             eeccc-c---ccc-----ccHHHHHHHhCccCCCcEEEE
Confidence            87632 1   110     112456778899999998874

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1e-13  Score=115.57  Aligned_cols=112  Identities=14%  Similarity=0.100  Sum_probs=72.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCE-------------------------
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNI-------------------------  177 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni-------------------------  177 (241)
                      .++.+|||||||+|.++..++....  ..|+|+|+|+.|++.|++++++.+....                         
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  127 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence            3467899999999999887776532  3699999999999999999875543210                         


Q ss_pred             -----EEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          178 -----HFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       178 -----~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                           .....+.... ....+..+++||.|+..+.-.+....    +.....+++++.++|||||.+++
T Consensus       128 ~~~~~~~~~~~~~~~-~~~~~~~~~~fD~i~~~~~l~~~~~~----~~~~~~~l~~i~~~LkpGG~li~  191 (257)
T d2a14a1         128 RAAVKRVLKCDVHLG-NPLAPAVLPLADCVLTLLAMECACCS----LDAYRAALCNLASLLKPGGHLVT  191 (257)
T ss_dssp             HHHEEEEEECCTTSS-STTTTCCCCCEEEEEEESCHHHHCSS----HHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hhhhhcccccccccc-cccccccCCcccEEeehhhHHHhccc----HHHHHHHHHHHHhccCCCcEEEE
Confidence                 1111111110 00112246789999876643222100    01124899999999999999875

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.3e-12  Score=107.86  Aligned_cols=106  Identities=15%  Similarity=0.195  Sum_probs=88.6

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC-CCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS-YPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~-~~~~~d~V  202 (241)
                      .++|||||||+|..++.+++..+..++++.+|++++..+.|++++++.|+. +++++.+|+.+.++..... .++.||.|
T Consensus        60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i  139 (219)
T d2avda1          60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  139 (219)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence            478999999999999999998874589999999999999999999999985 5999999998877655432 35789998


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++.....           .+...++.+.++|+|||.+++
T Consensus       140 fiD~dk~-----------~y~~~~~~~~~lL~~GGvii~  167 (219)
T d2avda1         140 VVDADKE-----------NCSAYYERCLQLLRPGGILAV  167 (219)
T ss_dssp             EECSCST-----------THHHHHHHHHHHEEEEEEEEE
T ss_pred             EEeCCHH-----------HHHHHHHHHHHHhcCCcEEEE
Confidence            8764211           125888999999999999875

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=1e-12  Score=108.85  Aligned_cols=98  Identities=19%  Similarity=0.325  Sum_probs=76.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC------CCCcEEEEEeCCHHHHHHHHHHHHHh-----CCCCEEEEEccccchHHhhc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN------PDSGNYLGLEIRQKLVKRAEFWVQEL-----ALSNIHFLFANASVSFKQLV  192 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~------p~~~~v~giDis~~~v~~a~~~~~~~-----~l~ni~~~~~D~~~~~~~~~  192 (241)
                      ++.+|||||||+|..+..+++..      +. .+|+++|+++++++.|++++.+.     +..|+.++.+|+.+..+   
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~-~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~---  155 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDAD-TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP---  155 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTT-CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG---
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcc-cEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc---
Confidence            57899999999999999998863      23 48999999999999999986543     45689999999976321   


Q ss_pred             cCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          193 SSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       193 ~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                        ..+.||.|++...-+..              -+.+.+.|||||++++
T Consensus       156 --~~~~fD~Iiv~~a~~~~--------------p~~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         156 --PNAPYNAIHVGAAAPDT--------------PTELINQLASGGRLIV  188 (223)
T ss_dssp             --GGCSEEEEEECSCBSSC--------------CHHHHHTEEEEEEEEE
T ss_pred             --cccceeeEEEEeechhc--------------hHHHHHhcCCCcEEEE
Confidence              24789999887654422              1246789999999874

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=1.9e-12  Score=115.75  Aligned_cols=111  Identities=18%  Similarity=0.138  Sum_probs=75.7

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC---------CCCEEE-EEccccc
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA---------LSNIHF-LFANASV  186 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~---------l~ni~~-~~~D~~~  186 (241)
                      .+...-.++.+|||||||+|..++.+|+.++. .+++|||+|+.|++.|++++++.+         ..++.+ +.+|..+
T Consensus       209 l~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~-~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~  287 (406)
T d1u2za_         209 YQQCQLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD  287 (406)
T ss_dssp             HHHTTCCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred             HHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhh
Confidence            33343345789999999999999999999886 689999999999999999887632         123333 3444432


Q ss_pred             h--HHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          187 S--FKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       187 ~--~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .  .+..+    ...|+|+++... +..+.        ...|+++++.|||||+|+.
T Consensus       288 ~~~~d~~~----~~adVV~inn~~-f~~~l--------~~~L~ei~r~LKPGGrIVs  331 (406)
T d1u2za_         288 NNRVAELI----PQCDVILVNNFL-FDEDL--------NKKVEKILQTAKVGCKIIS  331 (406)
T ss_dssp             CHHHHHHG----GGCSEEEECCTT-CCHHH--------HHHHHHHHTTCCTTCEEEE
T ss_pred             cccccccc----ccceEEEEeccc-CchHH--------HHHHHHHHHhcCCCcEEEE
Confidence            1  11212    234566554221 11111        4889999999999999863

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.34  E-value=2.5e-12  Score=111.76  Aligned_cols=114  Identities=12%  Similarity=0.042  Sum_probs=86.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+|||++||+|.+++.++....  ..|++||+|+.+++.+++|++.+++.  +++++++|+.+++..... ....||+
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga--~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~-~~~~fD~  220 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR-HHLTYDI  220 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH-TTCCEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCC--ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHh-hcCCCCE
Confidence            378999999999999998887544  37999999999999999999999873  799999999887655432 2467999


Q ss_pred             EEEeCCCCchhhhhhhccc--chHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRV--VQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~--~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++..|. +.+.+......  -+..+++.+.++|+|||.|++
T Consensus       221 Ii~DPP~-f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~  261 (317)
T d2b78a2         221 IIIDPPS-FARNKKEVFSVSKDYHKLIRQGLEILSENGLIIA  261 (317)
T ss_dssp             EEECCCC-C-----CCCCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEcChh-hccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            9887553 11111111111  245799999999999999874

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.8e-13  Score=114.53  Aligned_cols=113  Identities=17%  Similarity=0.113  Sum_probs=74.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC---------------------------
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS---------------------------  175 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~---------------------------  175 (241)
                      .++.+|||||||+|.+....+....  .+|+|+|+|+.|++.+++++++....                           
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            3578999999999988765554433  37999999999999999887543210                           


Q ss_pred             ---CEEEEEccccchHHh-hccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          176 ---NIHFLFANASVSFKQ-LVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       176 ---ni~~~~~D~~~~~~~-~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                         ...++.+|+...-+. .....++++|+|+..+...+...    .+.....++++++++|||||.+++
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~----~~~~~~~~l~~~~~~LkPGG~li~  196 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSP----DLASFQRALDHITTLLRPGGHLLL  196 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCS----SHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHcc----CHHHHHHHHHHHHHHcCCCCEEEE
Confidence               123455666431110 01123568999988765432210    001125899999999999999875

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.32  E-value=5e-12  Score=104.84  Aligned_cols=106  Identities=16%  Similarity=0.217  Sum_probs=89.0

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccC--CCCcEeE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSS--YPGPLML  201 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~--~~~~~d~  201 (241)
                      ..+|||||+++|..++.+++..|.+++++.+|.+++..+.|++++++.|+. +++++.+|+.+.++.+...  .++.||.
T Consensus        60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~  139 (227)
T d1susa1          60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF  139 (227)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSE
T ss_pred             CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeE
Confidence            478999999999999999998875589999999999999999999999985 5999999999887766432  2468999


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |++..-..           -+...++.+.++|+|||.|++
T Consensus       140 iFiDa~k~-----------~y~~~~e~~~~ll~~gGiii~  168 (227)
T d1susa1         140 IFVDADKD-----------NYLNYHKRLIDLVKVGGVIGY  168 (227)
T ss_dssp             EEECSCST-----------THHHHHHHHHHHBCTTCCEEE
T ss_pred             EEeccchh-----------hhHHHHHHHHhhcCCCcEEEE
Confidence            98864221           125899999999999999874

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.30  E-value=5e-12  Score=109.22  Aligned_cols=112  Identities=11%  Similarity=-0.007  Sum_probs=83.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+|||++||+|.+++.++..  + .+|++||.|+.+++.|++|++.+++.  +++++++|+.+++..... ....||+
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~--G-A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~-~~~~fD~  207 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER-RGSTYDI  207 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH-HTCCBSE
T ss_pred             CCCeEEEecCCCcHHHHHHHhC--C-CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhh-cCCCCCE
Confidence            4679999999999999999886  4 57999999999999999999999875  599999999886654321 2467999


Q ss_pred             EEEeCCCCchhhhhhhc---ccchHHHHHHHHhccccCCEEE
Q 026219          202 VSILCPDPHFKKKHHKR---RVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~---r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |++..|. ....+....   +.....+++.+.++|+|||.++
T Consensus       208 IilDPP~-f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~l  248 (309)
T d2igta1         208 ILTDPPK-FGRGTHGEVWQLFDHLPLMLDICREILSPKALGL  248 (309)
T ss_dssp             EEECCCS-EEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred             EEECCCc-ccccccchhHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence            8887542 111111000   1123467788899999999754

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=9.4e-12  Score=99.71  Aligned_cols=103  Identities=16%  Similarity=0.120  Sum_probs=82.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||++||+|.+++..+.+...  .|+.||.++++++.+++|++..+..+++++.+|+.+.+    ......||+|+
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l----~~~~~~fDlIf  116 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL----AQKGTPHNIVF  116 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH----SSCCCCEEEEE
T ss_pred             chhhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccc----cccccccCEEE
Confidence            3689999999999999998888654  89999999999999999999888889999999997643    23457899988


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHh--ccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIID--YLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r--~LkpGG~l~~  241 (241)
                      +..|-  ...       ..+.+++.+.+  +|+++|.+++
T Consensus       117 ~DPPY--~~~-------~~~~~l~~l~~~~~L~~~~iIii  147 (183)
T d2fpoa1         117 VDPPF--RRG-------LLEETINLLEDNGWLADEALIYV  147 (183)
T ss_dssp             ECCSS--STT-------THHHHHHHHHHTTCEEEEEEEEE
T ss_pred             EcCcc--ccc-------hHHHHHHHHHHCCCCCCCeEEEE
Confidence            87542  111       22466666654  6999999875

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.26  E-value=1.8e-11  Score=98.03  Aligned_cols=106  Identities=16%  Similarity=0.097  Sum_probs=83.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+|||++||+|.+++..+.+...  .|++||.++++++.+++|++..+.. +++++++|+.+.+..... ....||+|
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~-~~~~fDlI  117 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE-EKLQFDLV  117 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH-TTCCEEEE
T ss_pred             CCCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc-cCCCcceE
Confidence            5789999999999999999988654  7999999999999999999988874 799999999887655432 24579988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHH--hccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSII--DYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~--r~LkpGG~l~~  241 (241)
                      ++..|  +...       .....++.+.  .+|+|||.+++
T Consensus       118 flDPP--Y~~~-------~~~~~l~~i~~~~~L~~~giIi~  149 (182)
T d2fhpa1         118 LLDPP--YAKQ-------EIVSQLEKMLERQLLTNEAVIVC  149 (182)
T ss_dssp             EECCC--GGGC-------CHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             Eechh--hhhh-------HHHHHHHHHHHCCCCCCCEEEEE
Confidence            77644  2211       2246777775  47999998875

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.26  E-value=8.8e-12  Score=101.17  Aligned_cols=87  Identities=15%  Similarity=0.159  Sum_probs=66.7

Q ss_pred             CCCCCCCh-hhh---HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE
Q 026219          106 SFTVPAPI-PDW---SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF  181 (241)
Q Consensus       106 ~~~~~~~~-~~~---~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~  181 (241)
                      +|..|.+. ..|   .....+-++.+|||+|||+|.+++.++...+.  +|+|+|+++.+++.|++|+     .++++++
T Consensus        26 Qy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~-----~~~~~~~   98 (197)
T d1ne2a_          26 QYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNC-----GGVNFMV   98 (197)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHC-----TTSEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHcc-----ccccEEE
Confidence            55555443 233   23455567899999999999999888887544  7999999999999998864     5789999


Q ss_pred             ccccchHHhhccCCCCcEeEEEEeCC
Q 026219          182 ANASVSFKQLVSSYPGPLMLVSILCP  207 (241)
Q Consensus       182 ~D~~~~~~~~~~~~~~~~d~V~~~~~  207 (241)
                      +|+.+     +   ++.||.|+.+.|
T Consensus        99 ~D~~~-----l---~~~fD~Vi~NPP  116 (197)
T d1ne2a_          99 ADVSE-----I---SGKYDTWIMNPP  116 (197)
T ss_dssp             CCGGG-----C---CCCEEEEEECCC
T ss_pred             Eehhh-----c---CCcceEEEeCcc
Confidence            99975     2   578999888755

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=2.4e-11  Score=96.33  Aligned_cols=103  Identities=14%  Similarity=0.058  Sum_probs=72.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ++.+|||+|||+|.+++..+.+  + .+++++|+|+.+++.+++|++.+++.+ ++...|+...+... ......||.|+
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~--g-a~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~-~~~~~~fD~If  115 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASE--G-WEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEA-KAQGERFTVAF  115 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT--T-CEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHH-HHTTCCEEEEE
T ss_pred             CCCeEEEeccccchhhhhhhhc--c-chhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccccc-cccCCccceeE
Confidence            4789999999999999998887  4 579999999999999999999998853 45555554322221 11356799988


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHH--HhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSI--IDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l--~r~LkpGG~l~~  241 (241)
                      +..|-  ..+.        ...+..+  ..+|+|||.+++
T Consensus       116 ~DPPY--~~~~--------~~~l~~l~~~~ll~~~g~ivi  145 (171)
T d1ws6a1         116 MAPPY--AMDL--------AALFGELLASGLVEAGGLYVL  145 (171)
T ss_dssp             ECCCT--TSCT--------THHHHHHHHHTCEEEEEEEEE
T ss_pred             Ecccc--ccCH--------HHHHHHHHHcCCcCCCeEEEE
Confidence            76441  1111        1333333  357999998875

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.21  E-value=3e-11  Score=98.18  Aligned_cols=78  Identities=13%  Similarity=0.146  Sum_probs=65.1

Q ss_pred             HhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCc
Q 026219          119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGP  198 (241)
Q Consensus       119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~  198 (241)
                      ..++-++.+|||+|||+|.+++.++.+.+  ..|+|+|+|+.+++.+++|++..+. +.+++.+|+.+        .+..
T Consensus        41 ~~~dl~g~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~--------~~~~  109 (201)
T d1wy7a1          41 SLGDIEGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSE--------FNSR  109 (201)
T ss_dssp             HTTSSTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGG--------CCCC
T ss_pred             hcCCCCCCEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhh--------hCCc
Confidence            34555688999999999999999887644  4899999999999999999987775 68999999865        2577


Q ss_pred             EeEEEEeCC
Q 026219          199 LMLVSILCP  207 (241)
Q Consensus       199 ~d~V~~~~~  207 (241)
                      ||.|+.+.|
T Consensus       110 fD~Vi~nPP  118 (201)
T d1wy7a1         110 VDIVIMNPP  118 (201)
T ss_dssp             CSEEEECCC
T ss_pred             CcEEEEcCc
Confidence            999988765

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=6.8e-11  Score=100.29  Aligned_cols=108  Identities=18%  Similarity=0.144  Sum_probs=78.9

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ..+++|+|||+|..+..+++ +|+ .+|+|+|+|+++++.|++|++++++. ++.+..+|..+.+..    ..+.||+|+
T Consensus       111 ~~~vld~g~GsG~i~~~la~-~~~-~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~----~~~~fDlIV  184 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAK-FSD-AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE----KFASIEMIL  184 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHH-HSS-CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG----GTTTCCEEE
T ss_pred             ccEEEEeeeeeehhhhhhhh-ccc-ceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc----ccCcccEEE
Confidence            46899999999999999986 577 89999999999999999999999985 478888888764322    247899998


Q ss_pred             EeCCCC-----chhhhhhh----------cccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDP-----HFKKKHHK----------RRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~-----~~~~~~~~----------~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+.|--     .+....++          ...+++.+   +.++|+|||.++|
T Consensus       185 sNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~  234 (271)
T d1nv8a_         185 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLM  234 (271)
T ss_dssp             ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEE
T ss_pred             EcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEE
Confidence            886521     00000011          11233444   4578999999875

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.9e-11  Score=100.05  Aligned_cols=83  Identities=19%  Similarity=0.110  Sum_probs=67.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccchH-HhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVSF-KQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~~-~~~~~~~~~~~d~  201 (241)
                      +..++||||||+|..+..|+.+.++ ++++|+|+|+++++.|++|++.+++. ++.++..+....+ +.+....++.||.
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~-~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNG-WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCC-ccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            3468999999999999999999998 99999999999999999999999985 5888887654422 2222223567999


Q ss_pred             EEEeCC
Q 026219          202 VSILCP  207 (241)
Q Consensus       202 V~~~~~  207 (241)
                      |+.+.|
T Consensus       140 ivsNPP  145 (250)
T d2h00a1         140 CMCNPP  145 (250)
T ss_dssp             EEECCC
T ss_pred             EEecCc
Confidence            988765

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=1.8e-10  Score=99.50  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=90.5

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-----CCCCEEEEEccccchHHhhccCCC
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-----ALSNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-----~l~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      .++..+||.||.|.|..+..+.+..+. .+|++||+++++++.|++.+...     .-++++++.+|+.+.+..    .+
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~----~~  149 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTV-EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER----TE  149 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTC-CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH----CC
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCc-ceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh----cC
Confidence            345689999999999999999887666 79999999999999999986432     125799999999886543    35


Q ss_pred             CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+|+|++..++|+.... ....+...++++.+.+.|+|||.+++
T Consensus       150 ~~yDvIi~D~~dp~~~~~-~~~~L~t~eF~~~~~~~L~p~Gvlv~  193 (312)
T d1uira_         150 ERYDVVIIDLTDPVGEDN-PARLLYTVEFYRLVKAHLNPGGVMGM  193 (312)
T ss_dssp             CCEEEEEEECCCCBSTTC-GGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred             CcccEEEEeCCCcccccc-hhhhhhhHHHHHHHHHhcCCCceEEE
Confidence            789999998877654221 12345668999999999999998863

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.97  E-value=1.5e-09  Score=90.58  Aligned_cols=95  Identities=22%  Similarity=0.281  Sum_probs=70.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...+|||||||+|.++..+++++|+ .+++..|+ |+.++.+      ....+++++.+|+.+.       .+ ..|.++
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~~------~~~~ri~~~~gd~~~~-------~p-~~D~~~  144 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPL-IKGINFDL-PQVIENA------PPLSGIEHVGGDMFAS-------VP-QGDAMI  144 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTC------CCCTTEEEEECCTTTC-------CC-CEEEEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCC-CeEEEecc-hhhhhcc------CCCCCeEEecCCcccc-------cc-cceEEE
Confidence            4578999999999999999999999 99999998 4444322      1236899999998651       12 238776


Q ss_pred             EeCCC-CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPD-PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~-~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.... .|.++.       ...+|+++++.|+|||+++|
T Consensus       145 l~~vLh~~~de~-------~~~iL~~~~~aL~pgg~llI  176 (244)
T d1fp1d2         145 LKAVCHNWSDEK-------CIEFLSNCHKALSPNGKVII  176 (244)
T ss_dssp             EESSGGGSCHHH-------HHHHHHHHHHHEEEEEEEEE
T ss_pred             EehhhhhCCHHH-------HHHHHHHHHHHcCCCcEEEE
Confidence            65432 233222       24899999999999999875

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.97  E-value=1.2e-09  Score=92.80  Aligned_cols=109  Identities=12%  Similarity=0.101  Sum_probs=84.1

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh----------CCCCEEEEEccccchHHhh
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL----------ALSNIHFLFANASVSFKQL  191 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~----------~l~ni~~~~~D~~~~~~~~  191 (241)
                      .++..+||-||.|.|..+..+.+. +. .+|+.||+++++++.|++.....          .-++++++.+|+.+++.. 
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~-~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-  146 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQH-DV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-  146 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS-CC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred             CCCCceEEEecCCchHHHHHHHHh-CC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-
Confidence            345689999999999999998874 55 58999999999999999754211          235799999999875532 


Q ss_pred             ccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          192 VSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       192 ~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                          +..+|+|++...+|...    -..+...++++.+.+.|+|||.+++
T Consensus       147 ----~~~yDvIi~D~~~~~~~----~~~L~t~eF~~~~~~~L~~~Gv~v~  188 (276)
T d1mjfa_         147 ----NRGFDVIIADSTDPVGP----AKVLFSEEFYRYVYDALNNPGIYVT  188 (276)
T ss_dssp             ----CCCEEEEEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEE
T ss_pred             ----cCCCCEEEEeCCCCCCC----cccccCHHHHHhhHhhcCCCceEEE
Confidence                46799999888776321    1345677999999999999999863

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.94  E-value=1.6e-09  Score=92.80  Aligned_cols=112  Identities=14%  Similarity=0.209  Sum_probs=85.3

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh----CCCCEEEEEccccchHHhhccCCCC
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL----ALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~----~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      .++..+||-||.|.|..+..+.+..+. .+|++||+++++++.|++.....    .-++++++.+|+.+++..    .+.
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~-~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----~~~  161 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSV-EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK----FKN  161 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTC-SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG----CSS
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCC-ceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc----CCC
Confidence            345689999999999999999887665 68999999999999999976543    235799999999875433    357


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+|+|++...+|+...   ...+...++++.+.+.|+|||.+++
T Consensus       162 ~yDvIi~D~~dp~~~~---~~~L~t~efy~~~~~~L~~~Gi~v~  202 (295)
T d1inla_         162 EFDVIIIDSTDPTAGQ---GGHLFTEEFYQACYDALKEDGVFSA  202 (295)
T ss_dssp             CEEEEEEEC-------------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCEEEEcCCCCCcCc---hhhhccHHHHHHHHhhcCCCcEEEE
Confidence            8999999887764211   1245678999999999999999863

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=3.2e-09  Score=92.55  Aligned_cols=103  Identities=19%  Similarity=0.178  Sum_probs=76.0

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||+.||+|.+++.|+++.   .+|+|||+++.+++.|++|++.+++.|++|+.+|+.+.+.... .....+|.|
T Consensus       211 ~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~-~~~~~~d~v  286 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP-WAKNGFDKV  286 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG-GGTTCCSEE
T ss_pred             CCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhh-hhhccCceE
Confidence            346789999999999999999874   4699999999999999999999999999999999976432221 123567888


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++..|=...           ...++.+.+. +|.-.+|+
T Consensus       287 ilDPPR~G~-----------~~~~~~l~~~-~~~~ivYV  313 (358)
T d1uwva2         287 LLDPARAGA-----------AGVMQQIIKL-EPIRIVYV  313 (358)
T ss_dssp             EECCCTTCC-----------HHHHHHHHHH-CCSEEEEE
T ss_pred             EeCCCCccH-----------HHHHHHHHHc-CCCEEEEE
Confidence            766443211           2455555553 55555543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.90  E-value=3.9e-09  Score=84.05  Aligned_cols=104  Identities=16%  Similarity=0.132  Sum_probs=79.1

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccchHHhhccCCCCcEeEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      +.+|||+.||||.+++..+.+...  .|+.||.+.++++..++|++..+..  ...+...|+.+.+...  .....||+|
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~--~~~~~fDlI  119 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP--QNQPHFDVV  119 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC--CSSCCEEEE
T ss_pred             cceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhccccccccccccccccccccc--ccCCcccEE
Confidence            679999999999999999998765  8999999999999999999988764  4777888876533221  124569988


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHh--ccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIID--YLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r--~LkpGG~l~~  241 (241)
                      ++..|-.  ..       ..+.+++.+..  +|+++|.+++
T Consensus       120 FlDPPY~--~~-------~~~~~l~~l~~~~~L~~~~liii  151 (183)
T d2ifta1         120 FLDPPFH--FN-------LAEQAISLLCENNWLKPNALIYV  151 (183)
T ss_dssp             EECCCSS--SC-------HHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             EechhHh--hh-------hHHHHHHHHHHhCCcCCCcEEEE
Confidence            7765532  11       22477777754  7999999875

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=6.1e-09  Score=84.66  Aligned_cols=98  Identities=20%  Similarity=0.144  Sum_probs=83.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..+|+|||+|.|--++.+|-.+|+ .+++.+|.+..-+...++..++.+++|+++++..+++     .. .+..||.|+.
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~-~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-----~~-~~~~fD~V~s  138 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPE-AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-----FP-SEPPFDGVIS  138 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-----SC-CCSCEEEEEC
T ss_pred             CCceeeeeccCCceeeehhhhccc-ceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhh-----hc-cccccceehh
Confidence            468999999999999999999999 9999999999999999999999999999999999986     21 2467998775


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      --..+.            ..+++-+.+.+++||.+++
T Consensus       139 RA~~~~------------~~ll~~~~~~l~~~g~~~~  163 (207)
T d1jsxa_         139 RAFASL------------NDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             SCSSSH------------HHHHHHHTTSEEEEEEEEE
T ss_pred             hhhcCH------------HHHHHHHHHhcCCCcEEEE
Confidence            443332            4899999999999999874

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.86  E-value=5e-09  Score=89.43  Aligned_cols=112  Identities=21%  Similarity=0.289  Sum_probs=89.4

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh----CCCCEEEEEccccchHHhhccCCCC
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL----ALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~----~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      .++..+||=||-|.|..+..+.+..+. .+++.||+++++++.+++.....    .-++++++.+|+.+.+...   .++
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~-~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~---~~~  153 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHASI-EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA---AEG  153 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS---CTT
T ss_pred             CCCCcceEEecCCchHHHHHHHhcccc-eeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc---ccc
Confidence            345679999999999999999887665 68999999999999999976432    1357999999998754332   356


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+|+|++...+|...    -..+....+++.+.+.|+|||.+++
T Consensus       154 ~yDvIi~D~~dp~~~----~~~L~t~eF~~~~~~~L~~~Gi~v~  193 (290)
T d1xj5a_         154 SYDAVIVDSSDPIGP----AKELFEKPFFQSVARALRPGGVVCT  193 (290)
T ss_dssp             CEEEEEECCCCTTSG----GGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred             CccEEEEcCCCCCCc----chhhCCHHHHHHHHHhcCCCcEEEE
Confidence            899999988776432    2346778999999999999999863

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.85  E-value=1.1e-08  Score=88.10  Aligned_cols=114  Identities=14%  Similarity=0.237  Sum_probs=87.7

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ..++.+|||+++|.|.-+..++....+.+.++++|+++..++..++++++.+..|+.+...|...     .+..+..||.
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~-----~~~~~~~fD~  188 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH-----IGELNVEFDK  188 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGG-----GGGGCCCEEE
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccc-----cccccccccE
Confidence            34578999999999999999998876558999999999999999999999999999988888865     2224678999


Q ss_pred             EEEeCCC---------Cchh-----hhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          202 VSILCPD---------PHFK-----KKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       202 V~~~~~~---------~~~~-----~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |.+.-|-         |...     +...+-...+.+++++..+.|||||+++
T Consensus       189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lV  241 (313)
T d1ixka_         189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILV  241 (313)
T ss_dssp             EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEE
Confidence            9876531         1100     0001111267899999999999999875

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.85  E-value=5.2e-09  Score=88.61  Aligned_cols=110  Identities=10%  Similarity=0.155  Sum_probs=88.5

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh----CCCCEEEEEccccchHHhhccCCCC
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL----ALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~----~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      .++..+||-||-|.|..+..+.+..+. .+|+.|||++++++.|++.....    .-++++++.+|+.+.+..    .+.
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~-~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~----~~~  147 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSV-KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK----SEN  147 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTC-SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT----CCS
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCc-ceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh----cCC
Confidence            345689999999999999999986665 69999999999999999976432    225799999999875433    357


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .+|+|++..++|....    ..+..+++++.+.+.|+|||.++
T Consensus       148 ~yDvIi~D~~~p~~~~----~~L~t~eFy~~~~~~L~~~Gv~v  186 (274)
T d1iy9a_         148 QYDVIMVDSTEPVGPA----VNLFTKGFYAGIAKALKEDGIFV  186 (274)
T ss_dssp             CEEEEEESCSSCCSCC----CCCSTTHHHHHHHHHEEEEEEEE
T ss_pred             CCCEEEEcCCCCCCcc----hhhccHHHHHHHHhhcCCCceEE
Confidence            8999999887764321    23667899999999999999986

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.4e-09  Score=89.51  Aligned_cols=112  Identities=13%  Similarity=0.190  Sum_probs=84.0

Q ss_pred             cCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh----CCCCEEEEEccccchHHhhccCCC
Q 026219          121 KNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL----ALSNIHFLFANASVSFKQLVSSYP  196 (241)
Q Consensus       121 ~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~----~l~ni~~~~~D~~~~~~~~~~~~~  196 (241)
                      ..++..+||-||-|.|..+..+.+..+. .+++.+|+++++++.|++.....    .-++++++.+|+.+++..    .+
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~~-~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~----~~  149 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPSV-ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ----NQ  149 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT----CS
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCCc-ceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc----CC
Confidence            3445688999999999999999886555 79999999999999999876432    235899999999876533    35


Q ss_pred             CcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          197 GPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       197 ~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ..+|+|++...+|...    -..+...++++.+.+.|+|||.+++
T Consensus       150 ~~yDvIi~D~~~p~~~----~~~L~t~eF~~~~~~~L~~~Gi~v~  190 (285)
T d2o07a1         150 DAFDVIITDSSDPMGP----AESLFKESYYQLMKTALKEDGVLCC  190 (285)
T ss_dssp             SCEEEEEEECC---------------CHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCEEEEcCCCCCCc----ccccccHHHHHHHHHhcCCCCeEEE
Confidence            7899999988776431    1245667999999999999999864

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.81  E-value=4.6e-09  Score=90.40  Aligned_cols=111  Identities=14%  Similarity=0.169  Sum_probs=81.7

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh----CCCCEEEEEccccchHHhhccCCCC
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL----ALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~----~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      .++..+||-||-|.|..+..+.+..+. .+|+.||+++++++.|++.....    .-++++++.+|+.+++..    .+.
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v-~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~----~~~  178 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESV-EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN----HKN  178 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTC-CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH----CTT
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCc-ceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh----CCC
Confidence            345678999999999999999986665 68999999999999999876432    225799999999876543    357


Q ss_pred             cEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+|+|++..++|...    -..+....+++.+.+.|+|||.++.
T Consensus       179 ~yDvII~D~~dp~~~----~~~L~t~eFy~~~~~~L~~~Gi~v~  218 (312)
T d2b2ca1         179 EFDVIITDSSDPVGP----AESLFGQSYYELLRDALKEDGILSS  218 (312)
T ss_dssp             CEEEEEECCC-----------------HHHHHHHHEEEEEEEEE
T ss_pred             CCCEEEEcCCCCCCc----chhhhhHHHHHHHHhhcCCCcEEEE
Confidence            899999887776332    1246678999999999999999863

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=2.8e-08  Score=84.30  Aligned_cols=116  Identities=13%  Similarity=0.118  Sum_probs=86.8

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~  199 (241)
                      +...++.+|||+++|.|.-+..+++...+ +.|+++|+++..++..++++++.|.+++.....|... ... .  .+..|
T Consensus        98 L~~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~-~~~-~--~~~~f  172 (284)
T d1sqga2          98 LAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP-SQW-C--GEQQF  172 (284)
T ss_dssp             HCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT-HHH-H--TTCCE
T ss_pred             cCccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeecccccc-chh-c--ccccc
Confidence            33345789999999999999999998777 8999999999999999999999999887766666542 111 1  35779


Q ss_pred             eEEEEeCCC---------Cchhhhh-----hhcccchHHHHHHHHhccccCCEEE
Q 026219          200 MLVSILCPD---------PHFKKKH-----HKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       200 d~V~~~~~~---------~~~~~~~-----~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |.|.+.-|-         |..+...     .+-..++.++|+.+.+.|||||+|+
T Consensus       173 d~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lv  227 (284)
T d1sqga2         173 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLV  227 (284)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             cEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEE
Confidence            999886542         2111000     0111267899999999999999875

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.78  E-value=1.8e-08  Score=86.70  Aligned_cols=111  Identities=14%  Similarity=0.216  Sum_probs=79.6

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHC-----CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRN-----PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~-----p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      .++.+|||.|||+|.++..+.++.     +. ..++|+|+++.++..|+.++...+. +..+..+|...      ..+..
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~-~~~~g~di~~~~~~~a~~~~~~~~~-~~~~~~~d~~~------~~~~~  187 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVD-VHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLA------NLLVD  187 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCE-EEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTS------CCCCC
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCcc-ceEEEecccHHHHHHHHHHHHHhhh-hhhhhcccccc------ccccc
Confidence            346789999999999999987642     33 5799999999999999998877765 56677777654      12357


Q ss_pred             cEeEEEEeCCCCch--hhh--------hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHF--KKK--------HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~--~~~--------~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .||.|+.+.|-...  ...        ...+......+++.+.+.|+|||++.+
T Consensus       188 ~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~  241 (328)
T d2f8la1         188 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  241 (328)
T ss_dssp             CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence            89999998764110  000        001112345689999999999998754

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=6.4e-08  Score=76.94  Aligned_cols=119  Identities=16%  Similarity=0.151  Sum_probs=83.9

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      +..+.+...++..++|..+|.|.++..+.++  + ++|+|+|+++++++.+++.    ..+++.+++++..+........
T Consensus         9 Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~--~-~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~~~~l~~~   81 (182)
T d1wg8a2           9 EALDLLAVRPGGVYVDATLGGAGHARGILER--G-GRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHLKRHLAAL   81 (182)
T ss_dssp             HHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--T-CEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGHHHHHHHT
T ss_pred             HHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc--c-CcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHHHHHHHHc
Confidence            3445555556899999999999999999986  4 6899999999999988753    3368999999887643322222


Q ss_pred             CCCcEeEEEEeCCCC--chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          195 YPGPLMLVSILCPDP--HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       195 ~~~~~d~V~~~~~~~--~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ....+|.|++.+.-.  +.++.. +........|+....+|+|||.+.+
T Consensus        82 ~~~~vdgIl~DLGvSs~qld~~~-re~~~~~~~L~~~~~~lk~gg~~~i  129 (182)
T d1wg8a2          82 GVERVDGILADLGVSSFHLDDPS-DELNALKEFLEQAAEVLAPGGRLVV  129 (182)
T ss_dssp             TCSCEEEEEEECSCCHHHHHCGG-THHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCccCEEEEEccCCHHHhhcch-HHHHHHHHHHHHHHhhhCCCCeEEE
Confidence            346799998876432  111111 1112335688999999999998864

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.75  E-value=1.6e-08  Score=84.14  Aligned_cols=94  Identities=17%  Similarity=0.195  Sum_probs=68.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..+|||||||+|.++..+++++|+ .+++..|+ |+.++.+      ....+++++.+|+.+.       .+ ..|++++
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~~------~~~~rv~~~~gD~f~~-------~p-~aD~~~l  144 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPK-LKCIVFDR-PQVVENL------SGSNNLTYVGGDMFTS-------IP-NADAVLL  144 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTC------CCBTTEEEEECCTTTC-------CC-CCSEEEE
T ss_pred             ceEEEEecCCccHHHHHHHHhCCC-CeEEEecC-HHHHHhC------cccCceEEEecCcccC-------CC-CCcEEEE
Confidence            468999999999999999999999 99999999 4554433      1236899999998651       12 3577765


Q ss_pred             eCCC-CchhhhhhhcccchHHHHHHHHhccccC---CEEEc
Q 026219          205 LCPD-PHFKKKHHKRRVVQKPLVDSIIDYLMPG---GKVYF  241 (241)
Q Consensus       205 ~~~~-~~~~~~~~~~r~~~~~ll~~l~r~LkpG---G~l~~  241 (241)
                      .... -|.++.       ...+|+++++.|+||   |+++|
T Consensus       145 ~~vLHdw~d~~-------~~~iL~~~~~al~pgg~~~~lli  178 (244)
T d1fp2a2         145 KYILHNWTDKD-------CLRILKKCKEAVTNDGKRGKVTI  178 (244)
T ss_dssp             ESCGGGSCHHH-------HHHHHHHHHHHHSGGGCCCEEEE
T ss_pred             EeecccCChHH-------HHHHHHHHHHHcCcccCCcEEEE
Confidence            4432 233322       148999999999999   66654

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.73  E-value=7e-09  Score=86.11  Aligned_cols=94  Identities=16%  Similarity=0.241  Sum_probs=66.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      ..+|||||||+|.++..+++++|+ .++++.|+.+ .++.+      ....+++++.+|..+.    .  +.+.+  +++
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~-vi~~~------~~~~r~~~~~~d~~~~----~--P~ad~--~~l  145 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPT-IKGINFDLPH-VIEDA------PSYPGVEHVGGDMFVS----I--PKADA--VFM  145 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTT-SEEEEEECTT-TTTTC------CCCTTEEEEECCTTTC----C--CCCSC--EEC
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCC-CeEEEcccHH-hhhhc------ccCCceEEeccccccc----C--CCcce--EEE
Confidence            468999999999999999999999 9999999965 33322      1225799999998652    1  23322  222


Q ss_pred             e-CCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          205 L-CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       205 ~-~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      . .-.-|..+..       ..+|+++++.|+|||+++|
T Consensus       146 ~~vlh~~~d~~~-------~~iL~~~~~al~pgg~~li  176 (243)
T d1kyza2         146 KWICHDWSDEHC-------LKFLKNCYEALPDNGKVIV  176 (243)
T ss_dssp             SSSSTTSCHHHH-------HHHHHHHHHHCCSSSCEEE
T ss_pred             EEEeecCCHHHH-------HHHHHHHHHhcCCCceEEE
Confidence            1 1111332221       5899999999999998875

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.72  E-value=1.5e-08  Score=83.76  Aligned_cols=75  Identities=23%  Similarity=0.199  Sum_probs=58.2

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      .++.+|||||||+|.++..|++..   .+|++||+++.+++..+++..  +.+|++++++|+.+     ++.+......|
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~-----~~~~~~~~~~v   89 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQ-----FKFPKNQSYKI   89 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGG-----CCCCSSCCCEE
T ss_pred             CCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhh--cccchhhhhhhhhh-----cccccccccee
Confidence            357899999999999999999973   479999999999999988653  34689999999987     22222222345


Q ss_pred             EEeCC
Q 026219          203 SILCP  207 (241)
Q Consensus       203 ~~~~~  207 (241)
                      +.+.|
T Consensus        90 v~NLP   94 (235)
T d1qama_          90 FGNIP   94 (235)
T ss_dssp             EEECC
T ss_pred             eeeeh
Confidence            66665

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.3e-07  Score=80.55  Aligned_cols=115  Identities=8%  Similarity=-0.019  Sum_probs=80.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ..+.+|||+++|.|.-+..++....+.+.|+++|+++..++..++++++.|.+|+.+...|.....+. . ...+.||.|
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~-~-~~~~~fD~V  170 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS-D-PRYHEVHYI  170 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT-C-GGGTTEEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccc-c-cccceeeEE
Confidence            35789999999999999999887544379999999999999999999999999999999998752111 0 012568988


Q ss_pred             EEeCCC---------C---chhhhhhh--c--ccchHHHHHHHHhccccCCEEE
Q 026219          203 SILCPD---------P---HFKKKHHK--R--RVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       203 ~~~~~~---------~---~~~~~~~~--~--r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      ++.-|-         |   |.......  .  -..+..+++.+.. |+|||.|+
T Consensus       171 L~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~-l~~gG~lv  223 (293)
T d2b9ea1         171 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FPSLQRLV  223 (293)
T ss_dssp             EECCCCCC------------------CCHHHHHHHHHHHHHHHTT-CTTCCEEE
T ss_pred             eecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhhh-cccccEEE
Confidence            776431         1   11000000  1  1145667777774 79999875

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.69  E-value=8.1e-08  Score=76.81  Aligned_cols=108  Identities=17%  Similarity=0.160  Sum_probs=65.0

Q ss_pred             CCCcEEEEcCCccHHH----HHHHHHCC---CCcEEEEEeCCHHHHHHHHHHH--------------HHh----CC----
Q 026219          124 TLPLMVDIGSGSGRFL----IWLARRNP---DSGNYLGLEIRQKLVKRAEFWV--------------QEL----AL----  174 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~----~~la~~~p---~~~~v~giDis~~~v~~a~~~~--------------~~~----~l----  174 (241)
                      ..-+|+++|||+|.-.    +.+.+...   ...+++|+|+|+.+++.|++-.              .+.    +.    
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            3468999999999743    33443321   1257999999999999997421              110    00    


Q ss_pred             ---------CCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          175 ---------SNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       175 ---------~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                               ..+.+...+....    ...+.+.+|+|++-....++...      ..+++++.+++.|+|||.|++
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~fDvI~CRNVLiYf~~~------~~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEK----QYNVPGPFDAIFCRNVMIYFDKT------TQEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS----SCCCCCCEEEEEECSSGGGSCHH------HHHHHHHHHGGGEEEEEEEEE
T ss_pred             eeehHHHHHHHHHHhhhhcccc----ccCCCCCccEEEeehhHHhcCHH------HHHHHHHHHHHHhCCCcEEEE
Confidence                     0122222222210    11134789999765433222211      225999999999999999875

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.63  E-value=1.2e-07  Score=78.51  Aligned_cols=103  Identities=16%  Similarity=0.086  Sum_probs=85.0

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ...+|+|||+|.|--++.+|-.+|+ .+++-+|.+..-+...+.-.++.+++|+.++++.+++.- . .......||.|+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~-~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~-~-~~~~~~~~D~v~  146 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFG-Q-RKDVRESYDIVT  146 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHT-T-CTTTTTCEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCC-ccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcc-c-cccccccceEEE
Confidence            3578999999999999999999999 899999999999999999999999999999999887521 1 111246799888


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .--..+.            ..+++-+..++++||.+++
T Consensus       147 sRAva~l------------~~ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         147 ARAVARL------------SVLSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             EECCSCH------------HHHHHHHGGGEEEEEEEEE
T ss_pred             EhhhhCH------------HHHHHHHhhhcccCCEEEE
Confidence            7654432            3899999999999999874

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.61  E-value=4.8e-08  Score=78.58  Aligned_cols=109  Identities=16%  Similarity=0.182  Sum_probs=74.3

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCC
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPG  197 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~  197 (241)
                      +....+++.+|||.|||+|.++..+.++.+....++|+|+++..+..+         .+..++.+|...     .. ...
T Consensus        13 ~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~-----~~-~~~   77 (223)
T d2ih2a1          13 SLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLL-----WE-PGE   77 (223)
T ss_dssp             HHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGG-----CC-CSS
T ss_pred             HhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhc-----cc-ccc
Confidence            344445678999999999999999987765546899999999765432         356788888764     11 346


Q ss_pred             cEeEEEEeCCCCch---hhh------------------hhhcccchHHHHHHHHhccccCCEEEc
Q 026219          198 PLMLVSILCPDPHF---KKK------------------HHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       198 ~~d~V~~~~~~~~~---~~~------------------~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+|.++.+.|.-..   ...                  ...+...+..+++.+.+.|+|||++.+
T Consensus        78 ~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1          78 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence            78988877652100   000                  001112456788999999999999764

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.53  E-value=1.2e-08  Score=84.85  Aligned_cols=84  Identities=11%  Similarity=0.082  Sum_probs=63.2

Q ss_pred             hhHHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC
Q 026219          115 DWSEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS  194 (241)
Q Consensus       115 ~~~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~  194 (241)
                      +..+.....++.+|||||||+|.++..|+++.   .+|++||+++.+++.++++..  ..+|++++++|+.+     ++.
T Consensus        20 kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~-----~~~   89 (245)
T d1yuba_          20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQ-----FQF   89 (245)
T ss_dssp             HHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTT-----TTC
T ss_pred             HHHHhcCCCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhh--hccchhhhhhhhhc-----ccc
Confidence            34444443457899999999999999999983   479999999999998876543  33689999999987     333


Q ss_pred             CCCcEeEEEEeCCC
Q 026219          195 YPGPLMLVSILCPD  208 (241)
Q Consensus       195 ~~~~~d~V~~~~~~  208 (241)
                      ++...+.|+.+.|-
T Consensus        90 ~~~~~~~vv~NLPY  103 (245)
T d1yuba_          90 PNKQRYKIVGNIPY  103 (245)
T ss_dssp             CCSSEEEEEEECCS
T ss_pred             ccceeeeEeeeeeh
Confidence            34555667777664

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.46  E-value=5.6e-07  Score=79.00  Aligned_cols=99  Identities=13%  Similarity=0.033  Sum_probs=78.1

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC---------------EEEEEccccchHH
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSN---------------IHFLFANASVSFK  189 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~n---------------i~~~~~D~~~~~~  189 (241)
                      +.+|||..||+|..++.++...+. ..|++.|+|+++++.+++|++.++..+               +.+...|+.....
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~-~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPA-EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSC-SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCC-CEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            478999999999999998887765 689999999999999999999887643               5666777754322


Q ss_pred             hhccCCCCcEeEEEEeC-CCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          190 QLVSSYPGPLMLVSILC-PDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       190 ~~~~~~~~~~d~V~~~~-~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .    -...||.|.+.. ..|             ..+|+.+.+.++.||.+.+
T Consensus       125 ~----~~~~fDvIDiDPfGs~-------------~pfldsAi~a~~~~Gll~v  160 (375)
T d2dula1         125 E----RHRYFHFIDLDPFGSP-------------MEFLDTALRSAKRRGILGV  160 (375)
T ss_dssp             H----STTCEEEEEECCSSCC-------------HHHHHHHHHHEEEEEEEEE
T ss_pred             h----hcCcCCcccCCCCCCc-------------HHHHHHHHHHhccCCEEEE
Confidence            1    245689887653 223             3899999999999999875

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=7.5e-07  Score=70.40  Aligned_cols=107  Identities=14%  Similarity=0.179  Sum_probs=72.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchH--Hhhcc-CCCCcEe
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSF--KQLVS-SYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~--~~~~~-~~~~~~d  200 (241)
                      ++.+||||||+.|.++..+.++.+....++|+|+.+.           ...+++.++.+|+.+..  ..... .....+|
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D   90 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQ   90 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCccee
Confidence            3678999999999999998876544378999999872           24578999999997631  11111 1346799


Q ss_pred             EEEEeCC-CC--chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCP-DP--HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~-~~--~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|+.... +.  .....+.....+....+.-+.++|++||.+++
T Consensus        91 lVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~  134 (180)
T d1ej0a_          91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV  134 (180)
T ss_dssp             EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEE
Confidence            8876542 21  11111122223556778888999999999874

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.1e-06  Score=70.49  Aligned_cols=64  Identities=17%  Similarity=0.294  Sum_probs=53.9

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccc
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASV  186 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~  186 (241)
                      ....++..|||||+|+|.++..|+++.   .+|++||+++.+++..+++...... .|++++.+|+.+
T Consensus        17 ~~~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~   81 (278)
T d1zq9a1          17 AALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   81 (278)
T ss_dssp             TCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             hCCCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhh
Confidence            333357899999999999999999984   4799999999999999988765433 589999999986

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=3.8e-07  Score=75.92  Aligned_cols=64  Identities=16%  Similarity=0.132  Sum_probs=51.4

Q ss_pred             HHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          118 EVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       118 ~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      +.....++..|||||||+|.++..|+++.   .+|++||+++.+++..+++..  ..+|++++.+|+.+
T Consensus        15 ~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~~~~ii~~D~l~   78 (252)
T d1qyra_          15 SAINPQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPF--LGPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHCCCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTT--TGGGEEEECSCGGG
T ss_pred             HhcCCCCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhh--hccchhHHhhhhhh
Confidence            33333357899999999999999999874   369999999999999876432  22589999999986

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.24  E-value=7e-07  Score=73.38  Aligned_cols=98  Identities=16%  Similarity=0.151  Sum_probs=62.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHH----CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhccCCCCc
Q 026219          125 LPLMVDIGSGSGRFLIWLARR----NPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVSSYPGP  198 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~----~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~~~~~~  198 (241)
                      ..+|||||++.|..+..++..    .++ ++++|+|+++.......     ...++++++++|..+.  +..+   ....
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~-~kI~giDId~~~~~~~~-----~~~~~I~~i~gDs~~~~~~~~l---~~~~  151 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGID-CQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHL---REMA  151 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCC-CEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGG---SSSC
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCC-ceEEecCcChhhhhhhh-----ccccceeeeecccccHHHHHHH---HhcC
Confidence            478999999999988877643    245 79999999876543321     2346899999998642  2222   1234


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|++.-....  ..      +. .-+ ++..+|+|||.++|
T Consensus       152 ~dlIfID~~H~~--~~------v~-~~~-~~~~lLk~GG~iIv  184 (232)
T d2bm8a1         152 HPLIFIDNAHAN--TF------NI-MKW-AVDHLLEEGDYFII  184 (232)
T ss_dssp             SSEEEEESSCSS--HH------HH-HHH-HHHHTCCTTCEEEE
T ss_pred             CCEEEEcCCcch--HH------HH-HHH-HHhcccCcCCEEEE
Confidence            677766532111  10      01 112 35689999998875

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.20  E-value=3.2e-06  Score=75.03  Aligned_cols=117  Identities=11%  Similarity=0.050  Sum_probs=80.4

Q ss_pred             HhcCCCCCcEEEEcCCccHHHHHHHHHCCC------------CcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccc
Q 026219          119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPD------------SGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANA  184 (241)
Q Consensus       119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~p~------------~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~  184 (241)
                      ......+.+|+|-+||+|.++..+.+....            ...++|+|+++.+...|+-++.-.+..  +..+...|.
T Consensus       157 ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~  236 (425)
T d2okca1         157 CINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDS  236 (425)
T ss_dssp             HHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCT
T ss_pred             eccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCch
Confidence            333335789999999999999988765321            024999999999999999988777653  456777777


Q ss_pred             cchHHhhccCCCCcEeEEEEeCCCC---chhhhh------hhcccchHHHHHHHHhccccCCEEEc
Q 026219          185 SVSFKQLVSSYPGPLMLVSILCPDP---HFKKKH------HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       185 ~~~~~~~~~~~~~~~d~V~~~~~~~---~~~~~~------~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .+      ......+|.|+.+.|-.   +.....      ....-....+++.+.+.|++||++.+
T Consensus       237 l~------~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~i  296 (425)
T d2okca1         237 LE------KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  296 (425)
T ss_dssp             TT------SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hh------hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEE
Confidence            64      12356799998887641   100000      00111234799999999999998754

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.57  E-value=8e-05  Score=61.35  Aligned_cols=75  Identities=17%  Similarity=0.084  Sum_probs=58.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhC---------CCCEEEEEccccchHHhhccCC
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELA---------LSNIHFLFANASVSFKQLVSSY  195 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~---------l~ni~~~~~D~~~~~~~~~~~~  195 (241)
                      ..+|||.-||.|.-++.++..  + ++|++||.++.+....++.+++..         ..|++++++|+.+++.    ..
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~--G-~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~----~~  161 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASV--G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT----DI  161 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHH--T-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHST----TC
T ss_pred             CCEEEECCCcccHHHHHHHhC--C-CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHh----cc
Confidence            358999999999999999998  4 579999999998887776655431         1379999999987543    23


Q ss_pred             CCcEeEEEEeC
Q 026219          196 PGPLMLVSILC  206 (241)
Q Consensus       196 ~~~~d~V~~~~  206 (241)
                      ...+|+|++..
T Consensus       162 ~~~~DvIYlDP  172 (250)
T d2oyra1         162 TPRPQVVYLDP  172 (250)
T ss_dssp             SSCCSEEEECC
T ss_pred             CCCCCEEEECC
Confidence            46689888754

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00012  Score=66.36  Aligned_cols=119  Identities=20%  Similarity=0.160  Sum_probs=73.4

Q ss_pred             HhcCCCCCcEEEEcCCccHHHHHHHHHCCC-----------------CcEEEEEeCCHHHHHHHHHHHHHhCCC-C----
Q 026219          119 VYKNPTLPLMVDIGSGSGRFLIWLARRNPD-----------------SGNYLGLEIRQKLVKRAEFWVQELALS-N----  176 (241)
Q Consensus       119 ~~~~~~~~~VLDIGCGtG~~~~~la~~~p~-----------------~~~v~giDis~~~v~~a~~~~~~~~l~-n----  176 (241)
                      ......+.+|+|-+||+|.++....+....                 ...++|+|+++.+...|+-++--.+.. +    
T Consensus       159 ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~  238 (524)
T d2ar0a1         159 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG  238 (524)
T ss_dssp             HHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGT
T ss_pred             cccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccccccccc
Confidence            333335679999999999999887654210                 014899999999999999887655542 1    


Q ss_pred             EEEEEccccchHHhhccCCCCcEeEEEEeCCCC--chhhhh----hhcccchHHHHHHHHhccccCCEEEc
Q 026219          177 IHFLFANASVSFKQLVSSYPGPLMLVSILCPDP--HFKKKH----HKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       177 i~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~--~~~~~~----~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      -.+..+|.... +. .  ....||+|+.+.|--  +.....    ....-....+++.+.+.|+|||++.+
T Consensus       239 ~~~~~~~~l~~-d~-~--~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ai  305 (524)
T d2ar0a1         239 GAIRLGNTLGS-DG-E--NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV  305 (524)
T ss_dssp             BSEEESCTTSH-HH-H--TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             chhhhhhhhhh-cc-c--ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEE
Confidence            12333443321 11 1  236799988886531  100000    00011223699999999999998754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.42  E-value=0.00012  Score=56.72  Aligned_cols=97  Identities=18%  Similarity=0.055  Sum_probs=64.2

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE---ccccchHHhhccCC-CCc
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF---ANASVSFKQLVSSY-PGP  198 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~---~D~~~~~~~~~~~~-~~~  198 (241)
                      ++.+||=+|+| .|..+..+++...- .+|+++|.+++.++.+++    .|.+  .++.   .|..+......+.. ...
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~~i~~~~~~~g  100 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEE----IGAD--LTLNRRETSVEERRKAIMDITHGRG  100 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCccchhheeccccccc-cccccccccccccccccc----ccce--EEEeccccchHHHHHHHHHhhCCCC
Confidence            47899999998 58888899988754 489999999999988764    3532  2222   22222222222211 345


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|+-.-..+              ..++...+.|+|||++++
T Consensus       101 ~Dvvid~vG~~--------------~~~~~a~~~l~~~G~iv~  129 (182)
T d1vj0a2         101 ADFILEATGDS--------------RALLEGSELLRRGGFYSV  129 (182)
T ss_dssp             EEEEEECSSCT--------------THHHHHHHHEEEEEEEEE
T ss_pred             ceEEeecCCch--------------hHHHHHHHHhcCCCEEEE
Confidence            88766443333              667888999999999863

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.40  E-value=7.6e-05  Score=61.30  Aligned_cols=106  Identities=10%  Similarity=0.068  Sum_probs=60.4

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +..+|+|+|||.|.++..++.+.+. ..+.|+|+--+.-+.- ...+..+..-+.+...+-      +...++..+|.|+
T Consensus        66 ~~~~vvDlG~~pGgws~~~a~~~~v-~~V~g~~iG~d~~e~P-~~~~~~~~ni~~~~~~~d------v~~l~~~~~D~vl  137 (257)
T d2p41a1          66 PEGKVVDLGCGRGGWSYYCGGLKNV-REVKGLTKGGPGHEEP-IPMSTYGWNLVRLQSGVD------VFFIPPERCDTLL  137 (257)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTSTTE-EEEEEECCCSTTSCCC-CCCCSTTGGGEEEECSCC------TTTSCCCCCSEEE
T ss_pred             CCCeEEEecCCCChHHHHHHhhcCC-CceeEEEecCccccCC-ccccccccccccchhhhh------HHhcCCCcCCEEE
Confidence            3568999999999999999988665 6788888832210000 000001111133332221      1222467789887


Q ss_pred             EeCCC--CchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          204 ILCPD--PHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       204 ~~~~~--~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .....  +..... +.|-   -.+++-+.++|+|||.|++
T Consensus       138 cDm~ess~~~~vd-~~Rt---l~vLela~~wLk~gg~Fvv  173 (257)
T d2p41a1         138 CDIGESSPNPTVE-AGRT---LRVLNLVENWLSNNTQFCV  173 (257)
T ss_dssp             ECCCCCCSSHHHH-HHHH---HHHHHHHHHHCCTTCEEEE
T ss_pred             eeCCCCCCCchhh-hhhH---HHHHHHHHHHcccCCEEEE
Confidence            76532  222111 1121   2678888999999998764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.40  E-value=0.00034  Score=54.00  Aligned_cols=97  Identities=20%  Similarity=0.178  Sum_probs=64.4

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCC-CcEeE
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYP-GPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~-~~~d~  201 (241)
                      ++.+||=+|||. |..+..+++.... .+|+++|.+++.++.+++    .|..  +++.-.-.+..+.+....+ ..+|.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~----lGa~--~~i~~~~~~~~~~v~~~t~g~G~D~   99 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKF----YGAT--DILNYKNGHIEDQVMKLTNGKGVDR   99 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHH----HTCS--EEECGGGSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHh----hCcc--ccccccchhHHHHHHHHhhccCcce
Confidence            467788899996 8889999997654 479999999998888864    4543  2332222222222222122 34887


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+-.-..+              ..++...+.|+|+|++.+
T Consensus       100 vid~~g~~--------------~~~~~a~~~~~~~G~iv~  125 (174)
T d1jqba2         100 VIMAGGGS--------------ETLSQAVKMVKPGGIISN  125 (174)
T ss_dssp             EEECSSCT--------------THHHHHHHHEEEEEEEEE
T ss_pred             EEEccCCH--------------HHHHHHHHHHhcCCEEEE
Confidence            66554433              677888999999999864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.35  E-value=0.00054  Score=52.61  Aligned_cols=97  Identities=15%  Similarity=0.159  Sum_probs=65.2

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+||=+||| .|..+..+++.... ..++.+|.+++-++.+++    .|..  +++..+-.+..+.+....++.+|.|
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~----~Ga~--~~i~~~~~~~~~~i~~~t~gg~D~v  100 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQ----LGAT--HVINSKTQDPVAAIKEITDGGVNFA  100 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred             CCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHH----cCCe--EEEeCCCcCHHHHHHHHcCCCCcEE
Confidence            46788889998 45567777777655 578999999998888765    3543  3443333333333222235678976


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +-.-..+              ..++...++++|+|++.+
T Consensus       101 id~~G~~--------------~~~~~~~~~~~~~G~i~~  125 (174)
T d1f8fa2         101 LESTGSP--------------EILKQGVDALGILGKIAV  125 (174)
T ss_dssp             EECSCCH--------------HHHHHHHHTEEEEEEEEE
T ss_pred             EEcCCcH--------------HHHHHHHhcccCceEEEE
Confidence            6544332              788889999999998864

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=0.00027  Score=60.12  Aligned_cols=61  Identities=20%  Similarity=0.080  Sum_probs=49.9

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS  187 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~  187 (241)
                      +++..|||||.|.|.++..|.+.... -++++||+++..++..++...   ..|+.++++|+..+
T Consensus        42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          42 PEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCH
T ss_pred             cCCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhc
Confidence            34678999999999999999887432 379999999999999877542   25799999999764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.23  E-value=0.0012  Score=49.96  Aligned_cols=97  Identities=11%  Similarity=0.082  Sum_probs=62.1

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc----hHHhhccCCCCc
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV----SFKQLVSSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~----~~~~~~~~~~~~  198 (241)
                      .+.+||=+||| .|..+..+++.. + .+|+++|.+++.++.|++    .+.. ..+...+..+    ....+.......
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~-G-a~vi~v~~~~~r~~~a~~----~ga~-~~~~~~~~~~~~~~~~~~~~~~~g~g   98 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAY-G-AFVVCTARSPRRLEVAKN----CGAD-VTLVVDPAKEEESSIIERIRSAIGDL   98 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHH----TTCS-EEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred             CCCEEEEEcccccchhhHhhHhhh-c-ccccccchHHHHHHHHHH----cCCc-EEEeccccccccchhhhhhhcccccC
Confidence            46788989999 677778888775 4 689999999999988865    3432 2222211111    111111112345


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|+-.-..              ...++.+.++|+|||++++
T Consensus        99 ~D~vid~~g~--------------~~~~~~a~~~~~~~G~iv~  127 (170)
T d1e3ja2          99 PNVTIDCSGN--------------EKCITIGINITRTGGTLML  127 (170)
T ss_dssp             CSEEEECSCC--------------HHHHHHHHHHSCTTCEEEE
T ss_pred             CceeeecCCC--------------hHHHHHHHHHHhcCCceEE
Confidence            6765433332              2778889999999999864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.22  E-value=0.00035  Score=55.03  Aligned_cols=107  Identities=10%  Similarity=-0.011  Sum_probs=65.4

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE---ccccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF---ANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~---~D~~~~~~~~~~~~~~~~  199 (241)
                      ++.+||-+|||. |..+..+++.... .+|+++|.+++.++.|++    .|..  .++.   .|..+.+....  ....+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~----~Ga~--~~~~~~~~~~~~~i~~~t--~g~g~   95 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKA----QGFE--IADLSLDTPLHEQIAALL--GEPEV   95 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH----TTCE--EEETTSSSCHHHHHHHHH--SSSCE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcc-cceeeecccchhhHhhhh----cccc--EEEeCCCcCHHHHHHHHh--CCCCc
Confidence            478999999997 7778888887766 699999999999988865    3432  2222   12222122222  13457


Q ss_pred             eEEEEeCCCC---chhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDP---HFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~---~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |.++-....+   +....  -...-....++.+.+.++|||++.+
T Consensus        96 D~vid~vG~~~~~~~~~~--~~~~~~~~~l~~~~~~~r~gG~v~~  138 (195)
T d1kola2          96 DCAVDAVGFEARGHGHEG--AKHEAPATVLNSLMQVTRVAGKIGI  138 (195)
T ss_dssp             EEEEECCCTTCBCSSTTG--GGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEECccccccCCcccc--eeecCcHHHHHHHHHHHhcCCEEEE
Confidence            8765332211   00000  0000123789999999999999863

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00087  Score=51.07  Aligned_cols=99  Identities=8%  Similarity=0.034  Sum_probs=62.4

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE-ccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF-ANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~-~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+||=+|+| .|..+..+++.... .+|+++|.+++.++.|++    .|.+.+.... .|..+............+|.
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~----~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKE----IGADLVLQISKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH----TTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHH----hCCcccccccccccccccccccccCCCCceE
Confidence            46789999998 45666677777654 489999999999998764    3543222211 12111111111112345776


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+-.-..+              ..++...+.+++||++++
T Consensus       101 vid~~G~~--------------~~~~~a~~~~~~gG~iv~  126 (171)
T d1pl8a2         101 TIECTGAE--------------ASIQAGIYATRSGGTLVL  126 (171)
T ss_dssp             EEECSCCH--------------HHHHHHHHHSCTTCEEEE
T ss_pred             EEeccCCc--------------hhHHHHHHHhcCCCEEEE
Confidence            65443332              788999999999999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.0003  Score=53.74  Aligned_cols=94  Identities=10%  Similarity=0.069  Sum_probs=60.8

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-cccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-NASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+||-+|+| .|..+..+++.. + ++|+++|.+++.++.+++    .|.+  .++.. +-.+....    ....+|.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~-G-~~vi~~~~~~~k~~~a~~----lGa~--~~i~~~~~~~~~~~----~~~~~d~   94 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAM-G-AETYVISRSSRKREDAMK----MGAD--HYIATLEEGDWGEK----YFDTFDL   94 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-T-CEEEEEESSSTTHHHHHH----HTCS--EEEEGGGTSCHHHH----SCSCEEE
T ss_pred             CCCEEEEECCCCcchhHHHHhhhc-c-ccccccccchhHHHHhhc----cCCc--EEeeccchHHHHHh----hhcccce
Confidence            47889999999 788888888865 4 689999999998888764    4643  23321 11122211    2356887


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ++........            ..++...+.|+|||++++
T Consensus        95 vi~~~~~~~~------------~~~~~~~~~l~~~G~iv~  122 (168)
T d1piwa2          95 IVVCASSLTD------------IDFNIMPKAMKVGGRIVS  122 (168)
T ss_dssp             EEECCSCSTT------------CCTTTGGGGEEEEEEEEE
T ss_pred             EEEEecCCcc------------chHHHHHHHhhccceEEE
Confidence            7654332211            123446889999998864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.81  E-value=0.0018  Score=49.76  Aligned_cols=95  Identities=13%  Similarity=0.110  Sum_probs=64.2

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc---c-ccchHHhhccCCCCc
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA---N-ASVSFKQLVSSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~---D-~~~~~~~~~~~~~~~  198 (241)
                      ++.+||=+|||. |..+..+++.... ..|+.+|.+++..+.|++    .|...  ++..   | .........  ..+-
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~~~~~--~~~G   98 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKA----LGATD--CLNPRELDKPVQDVITEL--TAGG   98 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHHH--HTSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHH----hCCCc--ccCCccchhhhhhhHhhh--hcCC
Confidence            468889999996 8999999998765 689999999998888765    45432  2221   1 111111111  1355


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~~  241 (241)
                      +|.|+-.-..+              ..++...+.|++| |++++
T Consensus        99 ~d~vie~~G~~--------------~~~~~a~~~~~~g~G~~v~  128 (174)
T d1e3ia2          99 VDYSLDCAGTA--------------QTLKAAVDCTVLGWGSCTV  128 (174)
T ss_dssp             BSEEEESSCCH--------------HHHHHHHHTBCTTTCEEEE
T ss_pred             CcEEEEecccc--------------hHHHHHHHHhhcCCeEEEe
Confidence            78765443333              7889999999996 98864

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.78  E-value=0.00067  Score=54.41  Aligned_cols=50  Identities=24%  Similarity=0.349  Sum_probs=42.1

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHH
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQ  170 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~  170 (241)
                      .+.+.+ ++..|||.-||+|+++....+..   -+.+|+|++++-++.|+++++
T Consensus       206 I~~~s~-~gd~VlDpF~GSGTT~~aa~~~~---R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         206 IRASSN-PNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHCC-TTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHhCC-CCCEEEECCCCchHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHc
Confidence            344444 58999999999999999887774   369999999999999999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.68  E-value=0.00052  Score=56.72  Aligned_cols=47  Identities=21%  Similarity=0.319  Sum_probs=40.6

Q ss_pred             CCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026219          122 NPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE  171 (241)
Q Consensus       122 ~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~  171 (241)
                      .+++.+|||.-||+|+++....+..   -+.+|+|++++.++.|++++.+
T Consensus       248 s~~gdiVlDpF~GSGTT~~AA~~lg---R~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         248 TEPDDLVVDIFGGSNTTGLVAERES---RKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHGGGSC
T ss_pred             ccCCCEEEecCCCCcHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHHHh
Confidence            3468999999999999999988873   4699999999999999887654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.67  E-value=0.0028  Score=48.20  Aligned_cols=96  Identities=18%  Similarity=0.182  Sum_probs=62.0

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEeE
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d~  201 (241)
                      ++.+||=+|+|. |..+..+++.... ..++++|.+++.++.+++    .+..  .++..+- +..+..... ....+|.
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~----~ga~--~~i~~~~-~~~~~~~~~~~~~g~d~  103 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAER----LGAD--HVVDARR-DPVKQVMELTRGRGVNV  103 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHH----TTCS--EEEETTS-CHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhh----cccc--eeecCcc-cHHHHHHHhhCCCCceE
Confidence            468899999984 5555677776555 589999999998887764    3433  3343221 112221111 2345887


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+-....+              ..++...+.|++||++++
T Consensus       104 vid~~g~~--------------~~~~~a~~~l~~~G~iv~  129 (172)
T d1h2ba2         104 AMDFVGSQ--------------ATVDYTPYLLGRMGRLII  129 (172)
T ss_dssp             EEESSCCH--------------HHHHHGGGGEEEEEEEEE
T ss_pred             EEEecCcc--------------hHHHHHHHHHhCCCEEEE
Confidence            66544432              678889999999999864

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.58  E-value=0.0047  Score=46.60  Aligned_cols=97  Identities=14%  Similarity=0.192  Sum_probs=63.7

Q ss_pred             CCCcEEEEcC-C-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc-CCCCcEe
Q 026219          124 TLPLMVDIGS-G-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS-SYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGC-G-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~-~~~~~~d  200 (241)
                      ++.+||=+|+ | .|..+..+++.... ..|+++|.+++.++.+++    .|.+  .++..+-.+..+.... ..+..+|
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~~~~~~~~~d   99 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKR----AGAD--YVINASMQDPLAEIRRITESKGVD   99 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHH----cCCc--eeeccCCcCHHHHHHHHhhcccch
Confidence            4688999997 3 66667777776654 589999999998888765    3543  2333333333222221 1245688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++-....              ...++...+.|+|||++++
T Consensus       100 ~vid~~g~--------------~~~~~~a~~~l~~~G~iv~  126 (170)
T d1jvba2         100 AVIDLNNS--------------EKTLSVYPKALAKQGKYVM  126 (170)
T ss_dssp             EEEESCCC--------------HHHHTTGGGGEEEEEEEEE
T ss_pred             hhhccccc--------------chHHHhhhhhcccCCEEEE
Confidence            66544332              2777888999999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.47  E-value=0.0089  Score=44.78  Aligned_cols=95  Identities=16%  Similarity=0.117  Sum_probs=59.7

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+||=+|+| .|..+..+++.. + .+|+++|.+++.++.+++    .|.+  .++..+-.+..+.......+ .+.+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~-G-~~Vi~~~~~~~~~~~a~~----~Ga~--~~i~~~~~~~~~~~~~~~~g-~~~~   97 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAM-G-LHVAAIDIDDAKLELARK----LGAS--LTVNARQEDPVEAIQRDIGG-AHGV   97 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHHSS-EEEE
T ss_pred             CCCEEEEeeccccHHHHHHHHHHc-C-CccceecchhhHHHhhhc----cCcc--ccccccchhHHHHHHHhhcC-Cccc
Confidence            46778879998 577777788876 4 689999999999888754    4543  33332222222222111123 3433


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.....              ...++...+.|+|||++++
T Consensus        98 i~~~~~--------------~~~~~~~~~~l~~~G~iv~  122 (166)
T d1llua2          98 LVTAVS--------------NSAFGQAIGMARRGGTIAL  122 (166)
T ss_dssp             EECCSC--------------HHHHHHHHTTEEEEEEEEE
T ss_pred             cccccc--------------chHHHHHHHHhcCCcEEEE
Confidence            333222              2677889999999999864

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.41  E-value=0.0018  Score=52.50  Aligned_cols=52  Identities=12%  Similarity=0.008  Sum_probs=44.0

Q ss_pred             HHHhcCCCCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 026219          117 SEVYKNPTLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL  172 (241)
Q Consensus       117 ~~~~~~~~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~  172 (241)
                      ...+.+ ++..|||--||+|.++....+.+.   +.+|+|++++.++.|+++++..
T Consensus       201 I~~~s~-~gdiVLDpF~GSGTT~~Aa~~lgR---~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         201 VRALSH-PGSTVLDFFAGSGVTARVAIQEGR---NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHSC-TTCEEEETTCTTCHHHHHHHHHTC---EEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHhhcC-CCCEEEecCCCCcHHHHHHHHhCC---eEEEEeCCHHHHHHHHHHHHHh
Confidence            344544 589999999999999999888843   6999999999999999998754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0058  Score=46.36  Aligned_cols=93  Identities=16%  Similarity=0.070  Sum_probs=61.0

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE---ccccchHHhhccCCCCc
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF---ANASVSFKQLVSSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~---~D~~~~~~~~~~~~~~~  198 (241)
                      ++.+||=.|+  |.|..++.+++.. + +++++++.+++..+.+++    .|.+.  ++.   .|..+.+....  .+..
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~-G-~~vi~~~~~~~~~~~~~~----~Ga~~--vi~~~~~~~~~~i~~~t--~~~g   97 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAY-G-LKILGTAGTEEGQKIVLQ----NGAHE--VFNHREVNYIDKIKKYV--GEKG   97 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-T-CEEEEEESSHHHHHHHHH----TTCSE--EEETTSTTHHHHHHHHH--CTTC
T ss_pred             CCCEEEEEecccccccccccccccc-C-cccccccccccccccccc----cCccc--ccccccccHHHHhhhhh--ccCC
Confidence            4788999996  4788888899876 4 689999999987777653    46542  232   22222221222  2456


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +|.|+-...               ...++...+.|+|||+++.
T Consensus        98 ~d~v~d~~g---------------~~~~~~~~~~l~~~G~iv~  125 (174)
T d1yb5a2          98 IDIIIEMLA---------------NVNLSKDLSLLSHGGRVIV  125 (174)
T ss_dssp             EEEEEESCH---------------HHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEeeccc---------------HHHHHHHHhccCCCCEEEE
Confidence            886653321               2667888999999999863

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=95.80  E-value=0.0076  Score=49.05  Aligned_cols=113  Identities=13%  Similarity=-0.010  Sum_probs=68.6

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC---------------------------------------CCCcEEEEEeCCHHHHHHH
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN---------------------------------------PDSGNYLGLEIRQKLVKRA  165 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~---------------------------------------p~~~~v~giDis~~~v~~a  165 (241)
                      ...++|-.||+|.+.+..+-..                                       +....++|.|+++.+++.|
T Consensus        51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A  130 (249)
T d1o9ga_          51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  130 (249)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence            3569999999999998765421                                       0002467999999999988


Q ss_pred             H---HHHHHhCCC-CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchhhhhhhcc---cchHHHHHHHHhccccCCE
Q 026219          166 E---FWVQELALS-NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKKKHHKRR---VVQKPLVDSIIDYLMPGGK  238 (241)
Q Consensus       166 ~---~~~~~~~l~-ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~~~~~~r---~~~~~ll~~l~r~LkpGG~  238 (241)
                      +   +|++..|+. .+++.+.|+.+.-+......+....+|+.|.|  +.+.-..+..   ..+.++...+.+.|...-.
T Consensus       131 ~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP--YGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~  208 (249)
T d1o9ga_         131 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP--YGERTHWEGQVPGQPVAGLLRSLASALPAHAV  208 (249)
T ss_dssp             HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC--GGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             HHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCC--ccccccccccchHHHHHHHHHHHHccCCCCcE
Confidence            4   588888885 58999999865322110012344567777754  2211100000   1235677777777754333


Q ss_pred             E
Q 026219          239 V  239 (241)
Q Consensus       239 l  239 (241)
                      +
T Consensus       209 ~  209 (249)
T d1o9ga_         209 I  209 (249)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.64  E-value=0.022  Score=42.35  Aligned_cols=92  Identities=18%  Similarity=0.217  Sum_probs=56.8

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE---ccccchHHhhccCCCCcE
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF---ANASVSFKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~---~D~~~~~~~~~~~~~~~~  199 (241)
                      ++.+||=.|+|. |..+..+++.. + .+|+++|.+++.++.+++    .|.+.  ++.   .|..+.+....   ++ .
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~-g-~~v~~~~~~~~r~~~~k~----~Ga~~--~~~~~~~~~~~~~~~~~---~~-~   94 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAM-G-LNVVAVDIGDEKLELAKE----LGADL--VVNPLKEDAAKFMKEKV---GG-V   94 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHH----TTCSE--EECTTTSCHHHHHHHHH---SS-E
T ss_pred             CCCEEEEeecccchhhhhHHHhcC-C-CeEeccCCCHHHhhhhhh----cCcce--ecccccchhhhhccccc---CC-C
Confidence            467888899985 55566666664 4 589999999998887754    45432  121   12211111111   23 3


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +.++.....              ...++...+.|+|||++++
T Consensus        95 ~~~v~~~~~--------------~~~~~~a~~~l~~~G~i~~  122 (168)
T d1rjwa2          95 HAAVVTAVS--------------KPAFQSAYNSIRRGGACVL  122 (168)
T ss_dssp             EEEEESSCC--------------HHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEeecCC--------------HHHHHHHHHHhccCCceEe
Confidence            434433222              2788899999999999874

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.61  E-value=0.021  Score=43.49  Aligned_cols=44  Identities=16%  Similarity=0.197  Sum_probs=36.5

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHH
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFW  168 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~  168 (241)
                      ++.+||=+||| .|..+..+++.... .+|+++|++++.++.|++.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHH
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhc
Confidence            57889999999 56777778887765 6899999999999998763

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.47  E-value=0.022  Score=42.74  Aligned_cols=96  Identities=14%  Similarity=0.139  Sum_probs=60.2

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc-cccchHHh-hccCCCCcEe
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA-NASVSFKQ-LVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~-D~~~~~~~-~~~~~~~~~d  200 (241)
                      ++.+||=+||| .|.++..+++.... ..|+++|.+++..+.+++    .|.+.  ++.. +-.+.... .....++.+|
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~----lGa~~--~i~~~~~~~~~~~~~~~~~~~g~D  100 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKE----FGATE--CINPQDFSKPIQEVLIEMTDGGVD  100 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH----HTCSE--EECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHH----hCCcE--EEeCCchhhHHHHHHHHHcCCCCc
Confidence            47888888887 55677777777655 589999999998888764    45432  2221 11111111 1111245688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .|+-.-..+              ..++....++++||.+.
T Consensus       101 ~vid~~G~~--------------~~~~~~~~~~~~g~~~~  126 (176)
T d2fzwa2         101 YSFECIGNV--------------KVMRAALEACHKGWGVS  126 (176)
T ss_dssp             EEEECSCCH--------------HHHHHHHHTBCTTTCEE
T ss_pred             EeeecCCCH--------------HHHHHHHHhhcCCceeE
Confidence            766544332              77888999999987653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.20  E-value=0.046  Score=41.32  Aligned_cols=95  Identities=11%  Similarity=-0.016  Sum_probs=57.6

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE---cccc-chHHhhccCCCCc
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF---ANAS-VSFKQLVSSYPGP  198 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~---~D~~-~~~~~~~~~~~~~  198 (241)
                      ++.+||=+||| .|..+..+++.... .+|+++|.+++.++.|++    .|..  .++.   .|.. +......  .++-
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~----lGa~--~~i~~~~~d~~~~~~~~~~--~~~G   97 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIE----LGAT--ECLNPKDYDKPIYEVICEK--TNGG   97 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHHHH--TTSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHH----cCCc--EEEcCCCchhHHHHHHHHh--cCCC
Confidence            57889999999 45666667776655 589999999999998864    4543  2232   2211 0011111  2345


Q ss_pred             EeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccc-cCCEEEc
Q 026219          199 LMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLM-PGGKVYF  241 (241)
Q Consensus       199 ~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~Lk-pGG~l~~  241 (241)
                      +|.++-.-..+              ..++.....++ ++|++++
T Consensus        98 ~d~vid~~g~~--------------~~~~~~~~~~~~~~G~~v~  127 (174)
T d1p0fa2          98 VDYAVECAGRI--------------ETMMNALQSTYCGSGVTVV  127 (174)
T ss_dssp             BSEEEECSCCH--------------HHHHHHHHTBCTTTCEEEE
T ss_pred             CcEEEEcCCCc--------------hHHHHHHHHHHHhcCceEE
Confidence            78766543332              55566666554 5688764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.053  Score=40.46  Aligned_cols=92  Identities=13%  Similarity=0.102  Sum_probs=60.1

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEE
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLV  202 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V  202 (241)
                      ++.+||=+|+| .|.++..+++.. + .+++++|.+++-.+.+++    .|..  .++.  ..+....  ......+|.+
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~-G-a~~i~~~~~~~~~~~a~~----lGad--~~i~--~~~~~~~--~~~~~~~D~v   97 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAM-G-AHVVAFTTSEAKREAAKA----LGAD--EVVN--SRNADEM--AAHLKSFDFI   97 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEEESSGGGHHHHHH----HTCS--EEEE--TTCHHHH--HTTTTCEEEE
T ss_pred             CCCEEEEeccchHHHHHHHHhhcc-c-ccchhhccchhHHHHHhc----cCCc--EEEE--CchhhHH--HHhcCCCcee
Confidence            46788889998 588888888876 4 578899999988777654    4543  2332  2221111  1123568877


Q ss_pred             EEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          203 SILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +-.-..+              ..++...+.|+|||++.+
T Consensus        98 id~~g~~--------------~~~~~~~~~l~~~G~iv~  122 (168)
T d1uufa2          98 LNTVAAP--------------HNLDDFTTLLKRDGTMTL  122 (168)
T ss_dssp             EECCSSC--------------CCHHHHHTTEEEEEEEEE
T ss_pred             eeeeecc--------------hhHHHHHHHHhcCCEEEE
Confidence            6554433              445667889999998864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.52  E-value=0.074  Score=37.87  Aligned_cols=88  Identities=10%  Similarity=-0.023  Sum_probs=56.1

Q ss_pred             CCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCCCchh
Q 026219          133 SGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFK  212 (241)
Q Consensus       133 CGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~  212 (241)
                      ||.|..+..+++...+ ..++.+|.+++.++..+.       .++.++.+|+.+. +.+..-.-...+.+++..++. ..
T Consensus         6 ~G~g~~g~~l~~~L~~-~~i~vi~~d~~~~~~~~~-------~~~~~i~Gd~~~~-~~L~~a~i~~A~~vi~~~~~d-~~   75 (129)
T d2fy8a1           6 CGWSESTLECLRELRG-SEVFVLAEDENVRKKVLR-------SGANFVHGDPTRV-SDLEKANVRGARAVIVNLESD-SE   75 (129)
T ss_dssp             ESCCHHHHHHHHTSCG-GGEEEEESCTTHHHHHHH-------TTCEEEESCTTSH-HHHHHTTCTTCSEEEECCSSH-HH
T ss_pred             ECCCHHHHHHHHHHcC-CCCEEEEcchHHHHHHHh-------cCccccccccCCH-HHHHHhhhhcCcEEEEeccch-hh
Confidence            7889999999998877 679999999998776532       3578999999763 111111123456666665543 11


Q ss_pred             hhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          213 KKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       213 ~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                                ..++-...+.+.|...++
T Consensus        76 ----------n~~~~~~~r~~~~~~~ii   93 (129)
T d2fy8a1          76 ----------TIHCILGIRKIDESVRII   93 (129)
T ss_dssp             ----------HHHHHHHHHHHCSSSCEE
T ss_pred             ----------hHHHHHHHHHHCCCceEE
Confidence                      133344455566766543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.40  E-value=0.092  Score=38.92  Aligned_cols=89  Identities=19%  Similarity=0.176  Sum_probs=54.1

Q ss_pred             cEEEEcCCc-c-HHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          127 LMVDIGSGS-G-RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       127 ~VLDIGCGt-G-~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      +|+=||||. | .++..|.+.+.. .+|+|+|.+++.++.+++    .+.  +.....+...     .  .+...|+|++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~-~~I~~~D~~~~~~~~a~~----~~~--~~~~~~~~~~-----~--~~~~~dlIil   68 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFK-GKIYGYDINPESISKAVD----LGI--IDEGTTSIAK-----V--EDFSPDFVML   68 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCC-SEEEEECSCHHHHHHHHH----TTS--CSEEESCGGG-----G--GGTCCSEEEE
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCC-eEEEEEECChHHHHHHHH----hhc--chhhhhhhhh-----h--hccccccccc
Confidence            366789984 4 445566666555 689999999999988765    232  1111122211     1  1234577776


Q ss_pred             eCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          205 LCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       205 ~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .-|...           ...+++++.+.++++-.+.
T Consensus        69 a~p~~~-----------~~~vl~~l~~~~~~~~ii~   93 (171)
T d2g5ca2          69 SSPVRT-----------FREIAKKLSYILSEDATVT   93 (171)
T ss_dssp             CSCHHH-----------HHHHHHHHHHHSCTTCEEE
T ss_pred             cCCchh-----------hhhhhhhhhcccccccccc
Confidence            654321           1478888888888876553

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.37  E-value=0.027  Score=47.95  Aligned_cols=59  Identities=22%  Similarity=0.310  Sum_probs=41.1

Q ss_pred             hcCCCCCcEEEEcCCccHHHHHHHHHCC------CCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEE
Q 026219          120 YKNPTLPLMVDIGSGSGRFLIWLARRNP------DSGNYLGLEIRQKLVKRAEFWVQELALSNIHFL  180 (241)
Q Consensus       120 ~~~~~~~~VLDIGCGtG~~~~~la~~~p------~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~  180 (241)
                      ...|..-.|+|+|+|+|.++..+.+...      ...+++-+|+|+.+.+.-++++.  ...++.++
T Consensus        75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~--~~~~i~w~  139 (365)
T d1zkda1          75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA--GIRNIHWH  139 (365)
T ss_dssp             TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST--TCSSEEEE
T ss_pred             hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc--ccccceec
Confidence            4455556899999999999987765421      22579999999998777655543  33455554

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=93.99  E-value=0.051  Score=46.83  Aligned_cols=53  Identities=15%  Similarity=0.052  Sum_probs=44.0

Q ss_pred             CCCCcEEEEcCCccHHHHHHHHHCCC-CcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 026219          123 PTLPLMVDIGSGSGRFLIWLARRNPD-SGNYLGLEIRQKLVKRAEFWVQELALS  175 (241)
Q Consensus       123 ~~~~~VLDIGCGtG~~~~~la~~~p~-~~~v~giDis~~~v~~a~~~~~~~~l~  175 (241)
                      .++.+++|||+=.|.++..+++..+. ..+|+++|+++...+..+++++.++..
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~  264 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT  264 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence            35789999999999999888775443 258999999999999999999876543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.91  E-value=0.11  Score=38.86  Aligned_cols=96  Identities=9%  Similarity=0.081  Sum_probs=58.9

Q ss_pred             CCCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEE-ccccchHHhh-ccCCCCcEe
Q 026219          124 TLPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLF-ANASVSFKQL-VSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~-~D~~~~~~~~-~~~~~~~~d  200 (241)
                      ++.+||=+|+| .|..+..+++.... .+|+++|.+++-.+.+++    .|..  ..+. .+..+..... ....++.+|
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~-~~Vi~~~~~~~k~~~a~~----~Ga~--~~i~~~~~~~~~~~~~~~~~~~G~D  100 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGA-ARIIGVDINKDKFAKAKE----VGAT--ECVNPQDYKKPIQEVLTEMSNGGVD  100 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC-ceEEeecCcHHHHHHHHH----hCCe--eEEecCCchhHHHHHHHHHhcCCCC
Confidence            57889999997 44566667777766 799999999999888765    3433  2221 1222211111 111245688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccC-CEEE
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPG-GKVY  240 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpG-G~l~  240 (241)
                      .++-....+              ..++.....+++| |.+.
T Consensus       101 ~vid~~G~~--------------~~~~~a~~~~~~~~g~~~  127 (176)
T d2jhfa2         101 FSFEVIGRL--------------DTMVTALSCCQEAYGVSV  127 (176)
T ss_dssp             EEEECSCCH--------------HHHHHHHHHBCTTTCEEE
T ss_pred             EEEecCCch--------------hHHHHHHHHHhcCCcceE
Confidence            766554433              6667777788776 4543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.56  E-value=0.11  Score=38.58  Aligned_cols=43  Identities=9%  Similarity=0.133  Sum_probs=33.5

Q ss_pred             CCCcEEEEcCCc-cHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHH
Q 026219          124 TLPLMVDIGSGS-GRFLIWLARRNPDSGNYLGLEIRQKLVKRAEF  167 (241)
Q Consensus       124 ~~~~VLDIGCGt-G~~~~~la~~~p~~~~v~giDis~~~v~~a~~  167 (241)
                      ++.+||=+|+|. |..+..+++.... ..|+++|.+++.++.+++
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~-~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhh-chheeecchHHHHHHHHH
Confidence            478899999997 4555556666655 689999999998888764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.14  Score=38.05  Aligned_cols=94  Identities=10%  Similarity=-0.053  Sum_probs=59.7

Q ss_pred             CCCcEEEEcCC--ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEe
Q 026219          124 TLPLMVDIGSG--SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCG--tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d  200 (241)
                      ++.+||=.|+|  .|..+..+++.. + ++|++++.|++-.+.+++    .|.+  +++..+-.++.+.+... ....+|
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~-G-a~Vi~~~~s~~k~~~~~~----lGa~--~vi~~~~~d~~~~v~~~t~g~g~d   99 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKAL-G-AKLIGTVGTAQKAQSALK----AGAW--QVINYREEDLVERLKEITGGKKVR   99 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHH-T-CEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEEccccccchHHHHHHHHh-C-CeEeecccchHHHHHHHh----cCCe--EEEECCCCCHHHHHHHHhCCCCeE
Confidence            36788887555  678888898875 4 689999999998888754    4643  23332222222222111 235577


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .|+ .....              +.++...+.|+|+|+++
T Consensus       100 ~v~-d~~g~--------------~~~~~~~~~l~~~G~~v  124 (179)
T d1qora2         100 VVY-DSVGR--------------DTWERSLDCLQRRGLMV  124 (179)
T ss_dssp             EEE-ECSCG--------------GGHHHHHHTEEEEEEEE
T ss_pred             EEE-eCccH--------------HHHHHHHHHHhcCCeee
Confidence            544 43332              45677899999999875

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.32  E-value=0.37  Score=34.04  Aligned_cols=68  Identities=13%  Similarity=0.069  Sum_probs=42.7

Q ss_pred             CCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeCCC
Q 026219          133 SGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILCPD  208 (241)
Q Consensus       133 CGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~  208 (241)
                      ||.|.++..+++..  .+ ..|+.+|.+++.++.+++.      -++.++.+|+.+.- .+..-.-...|.++....+
T Consensus         6 ~G~G~~G~~la~~L~~~g-~~v~vid~d~~~~~~~~~~------~~~~vi~Gd~~~~~-~l~~~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAE------IDALVINGDCTKIK-TLEDAGIEDADMYIAVTGK   75 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH------CSSEEEESCTTSHH-HHHHTTTTTCSEEEECCSC
T ss_pred             ECCCHHHHHHHHHHHHCC-CCcceecCChhhhhhhhhh------hhhhhccCcccchh-hhhhcChhhhhhhcccCCc
Confidence            45577777777654  23 5899999999988876542      14678999998631 1111112445666655444

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.68  E-value=0.04  Score=43.97  Aligned_cols=61  Identities=13%  Similarity=0.073  Sum_probs=39.5

Q ss_pred             EEEEccccchHHhhccCCCCcEeEEEEeCCCCchhh---hhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          178 HFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKK---KHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       178 ~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~---~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .++.+|..+.+..+   +++++|+|+...|--....   .+.+........++++.|+|||||.+++
T Consensus         6 ~~~~~D~le~l~~l---~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~   69 (279)
T d1eg2a_           6 VYDVCDCLDTLAKL---PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAI   69 (279)
T ss_dssp             EEEECCHHHHHHTS---CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEechHHHHHhhC---cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence            47789998866553   5799999988765210000   0000111235788999999999998874

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.67  E-value=0.083  Score=39.59  Aligned_cols=94  Identities=10%  Similarity=-0.018  Sum_probs=58.8

Q ss_pred             CCCcEEEEc--CCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccC-CCCcEe
Q 026219          124 TLPLMVDIG--SGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSS-YPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIG--CGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~-~~~~~d  200 (241)
                      ++.+||=.|  .|.|..+..+++...  +++++++.+++-.+.++    +.|...  ++...-.+..+.+... .+..+|
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l~----~~Ga~~--vi~~~~~~~~~~v~~~t~~~g~d   96 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLS----RLGVEY--VGDSRSVDFADEILELTDGYGVD   96 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH----TTCCSE--EEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEECCCCCcccccchhhcccc--ccceeeecccccccccc----cccccc--cccCCccCHHHHHHHHhCCCCEE
Confidence            367788766  347788888888753  58999988887776664    345442  2322222222222221 235688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .|+-... .              ..++.+.++|+++|+++
T Consensus        97 ~v~d~~g-~--------------~~~~~~~~~l~~~G~~v  121 (183)
T d1pqwa_          97 VVLNSLA-G--------------EAIQRGVQILAPGGRFI  121 (183)
T ss_dssp             EEEECCC-T--------------HHHHHHHHTEEEEEEEE
T ss_pred             EEEeccc-c--------------hHHHHHHHHhcCCCEEE
Confidence            7764432 1              56777889999999986

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.54  E-value=0.31  Score=36.47  Aligned_cols=95  Identities=7%  Similarity=0.038  Sum_probs=60.4

Q ss_pred             CCCcEEEEcCC--ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhcc-CCCCcEe
Q 026219          124 TLPLMVDIGSG--SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVS-SYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGCG--tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~-~~~~~~d  200 (241)
                      ++.+||=.|.|  .|..+..+++...  ++|++++.+++..+.+++    .|.+.  ++.-+-.+..+.... ..+..+|
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~----~Ga~~--vi~~~~~~~~~~~~~~~~~~Gvd  100 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQ----IGFDA--AFNYKTVNSLEEALKKASPDGYD  100 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTCSE--EEETTSCSCHHHHHHHHCTTCEE
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHHHh----hhhhh--hcccccccHHHHHHHHhhcCCCc
Confidence            46788877774  5678888888764  699999999988777654    45432  232222222222111 1245588


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+ ...-              .+.++...++|+|||++++
T Consensus       101 ~v~-D~vG--------------~~~~~~~~~~l~~~G~~v~  126 (182)
T d1v3va2         101 CYF-DNVG--------------GEFLNTVLSQMKDFGKIAI  126 (182)
T ss_dssp             EEE-ESSC--------------HHHHHHHGGGEEEEEEEEE
T ss_pred             eeE-EecC--------------chhhhhhhhhccCCCeEEe
Confidence            655 3322              2778899999999998863

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=92.50  E-value=0.03  Score=44.20  Aligned_cols=61  Identities=20%  Similarity=0.174  Sum_probs=39.4

Q ss_pred             EEEEccccchHHhhccCCCCcEeEEEEeCCCCchhh------hhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          178 HFLFANASVSFKQLVSSYPGPLMLVSILCPDPHFKK------KHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       178 ~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~~~------~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +++++|..+.+..+   +++++|+|+...|--..+.      ...+-.......++++.|+|+|||.+++
T Consensus         6 ~i~~gDcle~l~~l---pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~   72 (256)
T d1g60a_           6 KIHQMNCFDFLDQV---ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYI   72 (256)
T ss_dssp             SEEECCHHHHHHHS---CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEeccHHHHHhhC---cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccc
Confidence            47899998876654   4789999988754210000      0001111234688999999999998863

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.16  E-value=0.093  Score=42.98  Aligned_cols=74  Identities=8%  Similarity=0.023  Sum_probs=50.4

Q ss_pred             CcEEEEcCCccHHHHHHHHHCCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEE
Q 026219          126 PLMVDIGSGSGRFLIWLARRNPDSG-NYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSI  204 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~~la~~~p~~~-~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~  204 (241)
                      -+|+|+-||.|.+..-+.+..-+ . -+.++|+++.+++.-+.|.     ++..++.+|+.+.....++  ...+|+++.
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~-~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~--~~~~Dll~g   74 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIP-AQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFD--RLSFDMILM   74 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCS-EEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHH--HHCCSEEEE
T ss_pred             CEEEEcCcCccHHHHHHHHcCCC-CeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcC--CCCccEEEe
Confidence            57999999999998888666422 2 3679999999888766542     4566777888764222221  135787776


Q ss_pred             eCC
Q 026219          205 LCP  207 (241)
Q Consensus       205 ~~~  207 (241)
                      .+|
T Consensus        75 gpP   77 (343)
T d1g55a_          75 SPP   77 (343)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            665

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.99  E-value=0.27  Score=37.07  Aligned_cols=97  Identities=16%  Similarity=0.155  Sum_probs=61.3

Q ss_pred             CCcEEEEcCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          125 LPLMVDIGSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       125 ~~~VLDIGCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      ..+|+=||+| .|..+...+.+..  .+|+.+|.+++.++..+....    .+++....+-.. +.+.+    ...|+|+
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~----~~~~~~~~~~~~-l~~~~----~~aDivI  100 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFG----SRVELLYSNSAE-IETAV----AEADLLI  100 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHG----GGSEEEECCHHH-HHHHH----HTCSEEE
T ss_pred             CcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhc----ccceeehhhhhh-HHHhh----ccCcEEE
Confidence            4789999999 6888888888875  589999999998887665432    356666555433 22222    2346665


Q ss_pred             EeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          204 ILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       204 ~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      -.---|-.+.+    .++.    +++.+.+|||..++
T Consensus       101 ~aalipG~~aP----~lIt----~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         101 GAVLVPGRRAP----ILVP----ASLVEQMRTGSVIV  129 (168)
T ss_dssp             ECCCCTTSSCC----CCBC----HHHHTTSCTTCEEE
T ss_pred             EeeecCCcccC----eeec----HHHHhhcCCCcEEE
Confidence            43222211111    2233    45678889988764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=91.80  E-value=0.5  Score=37.51  Aligned_cols=79  Identities=9%  Similarity=0.002  Sum_probs=53.5

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSY  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~  195 (241)
                      +++++|=.|+..| +...+++++  .+ .+|+.++.+++.++.+.+.++..+ .++.++.+|+.+.      +......+
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~G-~~V~i~~r~~~~l~~~~~~~~~~~-~~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSKG-IGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKG-LNVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC-CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            4678888898655 333343332  24 689999999999888888887766 4688899999763      22222334


Q ss_pred             CCcEeEEEEe
Q 026219          196 PGPLMLVSIL  205 (241)
Q Consensus       196 ~~~~d~V~~~  205 (241)
                      ++.+|.++.+
T Consensus        82 ~g~idilinn   91 (258)
T d1ae1a_          82 DGKLNILVNN   91 (258)
T ss_dssp             TSCCCEEEEC
T ss_pred             CCCcEEEecc
Confidence            5667766543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=91.35  E-value=0.36  Score=38.77  Aligned_cols=70  Identities=13%  Similarity=-0.055  Sum_probs=49.0

Q ss_pred             cEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEeC
Q 026219          127 LMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSILC  206 (241)
Q Consensus       127 ~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~  206 (241)
                      +|||+-||.|.+..-+.+..=  -.+.++|+++.+++.-+.|.     + -.++.+|+.+.-...+    ..+|+++..+
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~--~~~~a~e~d~~a~~~~~~N~-----~-~~~~~~Di~~~~~~~~----~~~dll~~g~   69 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNH-----S-AKLIKGDISKISSDEF----PKCDGIIGGP   69 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTC--EEEEEEECCHHHHHHHHHHC-----C-SEEEESCTTTSCGGGS----CCCSEEEECC
T ss_pred             eEEEeCcCcCHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHC-----C-CCCccCChhhCCHhHc----ccccEEeecc
Confidence            599999999999988877632  24669999999888765542     2 3567899986321111    3478887776


Q ss_pred             CC
Q 026219          207 PD  208 (241)
Q Consensus       207 ~~  208 (241)
                      |-
T Consensus        70 PC   71 (324)
T d1dcta_          70 PC   71 (324)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.27  E-value=0.17  Score=35.89  Aligned_cols=66  Identities=20%  Similarity=0.143  Sum_probs=41.0

Q ss_pred             CCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhccCCCCcEeEEEEeCCC
Q 026219          133 SGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVSSYPGPLMLVSILCPD  208 (241)
Q Consensus       133 CGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~~~~~~~d~V~~~~~~  208 (241)
                      ||.|.++..+++..  .+ ..|+.+|.+++.++.+++       .....+.+|+.+.  +...   .-...|.+++..++
T Consensus         6 iG~G~~G~~la~~L~~~g-~~vvvid~d~~~~~~~~~-------~~~~~~~gd~~~~~~l~~a---~i~~a~~vi~~~~~   74 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMG-HEVLAVDINEEKVNAYAS-------YATHAVIANATEENELLSL---GIRNFEYVIVAIGA   74 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTT-CCCEEEESCHHHHHHTTT-------TCSEEEECCTTCTTHHHHH---TGGGCSEEEECCCS
T ss_pred             ECCCHHHHHHHHHHHHCC-CeEEEecCcHHHHHHHHH-------hCCcceeeecccchhhhcc---CCccccEEEEEcCc
Confidence            35567776666543  23 579999999999887632       2346778998762  2111   11345677776665


Q ss_pred             C
Q 026219          209 P  209 (241)
Q Consensus       209 ~  209 (241)
                      .
T Consensus        75 ~   75 (134)
T d2hmva1          75 N   75 (134)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=90.74  E-value=0.5  Score=34.49  Aligned_cols=84  Identities=19%  Similarity=0.184  Sum_probs=48.6

Q ss_pred             EEEEcCC--ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEEEe
Q 026219          128 MVDIGSG--SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVSIL  205 (241)
Q Consensus       128 VLDIGCG--tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~  205 (241)
                      |.=||+|  -+.++..|.+.  + .+|+++|++++.++.+++    .+.-+  ....+...     .    ...|+|++.
T Consensus         3 I~iIG~G~mG~~lA~~l~~~--g-~~V~~~d~~~~~~~~a~~----~~~~~--~~~~~~~~-----~----~~~DiIila   64 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRR--G-HYLIGVSRQQSTCEKAVE----RQLVD--EAGQDLSL-----L----QTAKIIFLC   64 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHT--T-CEEEEECSCHHHHHHHHH----TTSCS--EEESCGGG-----G----TTCSEEEEC
T ss_pred             EEEEeecHHHHHHHHHHHHC--C-CEEEEEECCchHHHHHHH----hhccc--eeeeeccc-----c----ccccccccc
Confidence            4556776  22334444443  4 589999999998877654    34311  11122211     1    335777766


Q ss_pred             CCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          206 CPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       206 ~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      -|...           .+.+++++...|+++-.+.
T Consensus        65 vp~~~-----------~~~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          65 TPIQL-----------ILPTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             SCHHH-----------HHHHHHHHGGGSCTTCEEE
T ss_pred             CcHhh-----------hhhhhhhhhhhccccccee
Confidence            54321           1588899999888877653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=90.65  E-value=0.67  Score=36.70  Aligned_cols=79  Identities=9%  Similarity=-0.003  Sum_probs=53.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSY  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~  195 (241)
                      +++++|=.|.+.| +...+++++  .+ .+|+.+|++++.++.+.+.++..+ .++.++.+|+.+.      +......+
T Consensus         7 ~GK~alITGas~G-IG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGSRG-IGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKG-FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC-CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            4678888887655 344444433  24 789999999999988888887765 4688899999752      22222223


Q ss_pred             CCcEeEEEEe
Q 026219          196 PGPLMLVSIL  205 (241)
Q Consensus       196 ~~~~d~V~~~  205 (241)
                      .+.+|.++.+
T Consensus        84 ~~~idilvnn   93 (259)
T d2ae2a_          84 HGKLNILVNN   93 (259)
T ss_dssp             TTCCCEEEEC
T ss_pred             CCCceEEEEC
Confidence            4578877654

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=90.48  E-value=0.099  Score=42.21  Aligned_cols=63  Identities=13%  Similarity=0.068  Sum_probs=41.6

Q ss_pred             CEEEEEccccchHHhhccCCCCcEeEEEEeCCCCch------hhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          176 NIHFLFANASVSFKQLVSSYPGPLMLVSILCPDPHF------KKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       176 ni~~~~~D~~~~~~~~~~~~~~~~d~V~~~~~~~~~------~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      +-.++++|..+.+..+   +++++|+|++..|--..      ...+.+........+++++++|+|+|.+++
T Consensus        12 ~~~l~~GD~le~l~~l---~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i   80 (320)
T d1booa_          12 NGSMYIGDSLELLESF---PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVV   80 (320)
T ss_dssp             SEEEEESCHHHHGGGS---CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEehhHHHHHhhC---ccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence            4589999998866553   47999999887542100      001111112235789999999999999875

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.21  E-value=0.7  Score=34.63  Aligned_cols=92  Identities=13%  Similarity=0.082  Sum_probs=57.4

Q ss_pred             CCcEEEEc--CCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc---cccchHHhhccCCCCcE
Q 026219          125 LPLMVDIG--SGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA---NASVSFKQLVSSYPGPL  199 (241)
Q Consensus       125 ~~~VLDIG--CGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~---D~~~~~~~~~~~~~~~~  199 (241)
                      +.+||=.|  -|.|..++.+++.... ..|++++.+++......+   ..+.+  .++..   |..+.+...   .+..+
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga-~~vi~~~~~~e~~~~l~~---~~gad--~vi~~~~~~~~~~~~~~---~~~Gv  101 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGC-SRVVGICGTQEKCLFLTS---ELGFD--AAVNYKTGNVAEQLREA---CPGGV  101 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTC-SEEEEEESSHHHHHHHHH---HSCCS--EEEETTSSCHHHHHHHH---CTTCE
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCC-cceecccchHHHHhhhhh---cccce--EEeeccchhHHHHHHHH---hccCc
Confidence            36688766  4689999999998765 468888888765544322   33433  23322   222222222   23458


Q ss_pred             eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          200 MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       200 d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      |.|+=...               ...++...+.|+|||+++
T Consensus       102 Dvv~D~vG---------------g~~~~~~~~~l~~~G~iv  127 (187)
T d1vj1a2         102 DVYFDNVG---------------GDISNTVISQMNENSHII  127 (187)
T ss_dssp             EEEEESSC---------------HHHHHHHHTTEEEEEEEE
T ss_pred             eEEEecCC---------------chhHHHHhhhccccccEE
Confidence            87652221               266788999999999886

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=90.07  E-value=0.43  Score=38.68  Aligned_cols=72  Identities=13%  Similarity=-0.013  Sum_probs=50.8

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeEEE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      .+-+|||+-||.|.+..-|.+..-.  .+.++|+++.+++.-+.|.   +  +  ..++|+.+.....    -..+|+++
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~--~v~a~e~d~~a~~~~~~N~---~--~--~~~~Di~~~~~~~----~~~~Dll~   76 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAE--CVYSNEWDKYAQEVYEMNF---G--E--KPEGDITQVNEKT----IPDHDILC   76 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCE--EEEEECCCHHHHHHHHHHH---S--C--CCBSCGGGSCGGG----SCCCSEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCCe--EEEEEeCCHHHHHHHHHHC---C--C--CCcCchhcCchhh----cceeeeee
Confidence            4578999999999999998776322  4678999999999887664   2  2  1257887632221    23578888


Q ss_pred             EeCCC
Q 026219          204 ILCPD  208 (241)
Q Consensus       204 ~~~~~  208 (241)
                      ..+|-
T Consensus        77 ggpPC   81 (327)
T d2c7pa1          77 AGFPC   81 (327)
T ss_dssp             EECCC
T ss_pred             ccccc
Confidence            77763

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.05  E-value=0.58  Score=37.05  Aligned_cols=78  Identities=12%  Similarity=-0.001  Sum_probs=53.7

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CEEEEEccccch------HHhhccCC
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALS-NIHFLFANASVS------FKQLVSSY  195 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~-ni~~~~~D~~~~------~~~~~~~~  195 (241)
                      ++++|=.|++.| ++..+++++  .+ .+|+.+|.+++.++.+.+.+++.+.+ ++.++.+|+.+.      ++..... 
T Consensus        10 ~Kv~lITGas~G-IG~aiA~~la~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~-   86 (257)
T d1xg5a_          10 DRLALVTGASGG-IGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ-   86 (257)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh-
Confidence            678999997766 333444433  25 78999999999999988888877653 688899999762      2222221 


Q ss_pred             CCcEeEEEEe
Q 026219          196 PGPLMLVSIL  205 (241)
Q Consensus       196 ~~~~d~V~~~  205 (241)
                      -+.+|.++.+
T Consensus        87 ~g~iD~lVnn   96 (257)
T d1xg5a_          87 HSGVDICINN   96 (257)
T ss_dssp             HCCCSEEEEC
T ss_pred             cCCCCEEEec
Confidence            2568876654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.03  E-value=0.32  Score=36.10  Aligned_cols=90  Identities=17%  Similarity=0.100  Sum_probs=56.5

Q ss_pred             CCCcEEEEcC-C-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGS-G-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGC-G-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+||=.|. | .|..++.+++...  ++|++++.+++..+.+++    .|.+.+  +  |..+.......  ...+|.
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~~----lGa~~~--i--~~~~~~~~~~~--~~g~D~   94 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLA----LGAEEA--A--TYAEVPERAKA--WGGLDL   94 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHH----TTCSEE--E--EGGGHHHHHHH--TTSEEE
T ss_pred             CCCEEEEEeccccchhhhhhhhcccc--cccccccccccccccccc----ccccee--e--ehhhhhhhhhc--cccccc
Confidence            4678888884 4 5788888888764  689999999987777654    465422  2  22222222221  345886


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+ ....+               .++...+.|+|||++++
T Consensus        95 v~-d~~G~---------------~~~~~~~~l~~~G~~v~  118 (171)
T d1iz0a2          95 VL-EVRGK---------------EVEESLGLLAHGGRLVY  118 (171)
T ss_dssp             EE-ECSCT---------------THHHHHTTEEEEEEEEE
T ss_pred             cc-cccch---------------hHHHHHHHHhcCCcEEE
Confidence            64 33221               23557889999998863

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.85  E-value=0.64  Score=36.90  Aligned_cols=79  Identities=11%  Similarity=-0.005  Sum_probs=54.3

Q ss_pred             CCCcEEEEcCCccH---HHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccC
Q 026219          124 TLPLMVDIGSGSGR---FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSS  194 (241)
Q Consensus       124 ~~~~VLDIGCGtG~---~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~  194 (241)
                      +++++|=.|.+.|.   .+..|++.  + .+|+.+|.+++.++.+.+.++..+ .++..+.+|+.+.      ++.....
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~--G-a~V~~~~r~~~~l~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGF--G-AVIHTCARNEYELNECLSKWQKKG-FQVTGSVCDASLRPEREKLMQTVSSM   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHhcC-CceEEEeccCCCHHHHHHHHHHHHHH
Confidence            46888888877663   34444444  4 789999999999888888777655 3789999999752      2222222


Q ss_pred             CCCcEeEEEEeC
Q 026219          195 YPGPLMLVSILC  206 (241)
Q Consensus       195 ~~~~~d~V~~~~  206 (241)
                      +.+.+|.++.+-
T Consensus        83 ~~g~idilvnnA   94 (259)
T d1xq1a_          83 FGGKLDILINNL   94 (259)
T ss_dssp             HTTCCSEEEEEC
T ss_pred             hCCCcccccccc
Confidence            346788776653

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=88.68  E-value=0.92  Score=33.92  Aligned_cols=98  Identities=12%  Similarity=0.048  Sum_probs=56.8

Q ss_pred             CCcEEEE--cCC-ccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEc---cccchHHh---hccCC
Q 026219          125 LPLMVDI--GSG-SGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFA---NASVSFKQ---LVSSY  195 (241)
Q Consensus       125 ~~~VLDI--GCG-tG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~---D~~~~~~~---~~~~~  195 (241)
                      +.+||=+  |.| .|..++.+++.. + .+++++-.+++..+...+.+++.|.+.  ++.-   |..+..+.   .....
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~-G-a~vI~~v~~~~~~~~~~~~~~~lGad~--vi~~~~~~~~~~~~~v~~~~~~~  104 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLL-N-FNSISVIRDRPNLDEVVASLKELGATQ--VITEDQNNSREFGPTIKEWIKQS  104 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHH-T-CEEEEEECCCTTHHHHHHHHHHHTCSE--EEEHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhc-C-CeEEEEEecccccchHHhhhhhccccE--EEeccccchhHHHHHHHHHHhhc
Confidence            4556666  333 578888899876 4 689888666666565556666677643  2222   22221111   11111


Q ss_pred             CCcEeEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          196 PGPLMLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       196 ~~~~d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      ...+|.|+ ....              ...++...+.|+|||+++.
T Consensus       105 g~~vdvv~-D~vg--------------~~~~~~~~~~l~~~G~~v~  135 (189)
T d1gu7a2         105 GGEAKLAL-NCVG--------------GKSSTGIARKLNNNGLMLT  135 (189)
T ss_dssp             TCCEEEEE-ESSC--------------HHHHHHHHHTSCTTCEEEE
T ss_pred             cCCceEEE-ECCC--------------cchhhhhhhhhcCCcEEEE
Confidence            34577654 3322              2556778899999999863

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=88.61  E-value=0.31  Score=41.20  Aligned_cols=18  Identities=17%  Similarity=0.477  Sum_probs=14.9

Q ss_pred             HHHHHHHhccccCCEEEc
Q 026219          224 PLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       224 ~ll~~l~r~LkpGG~l~~  241 (241)
                      .+|+.=.+-|+|||++++
T Consensus       190 ~FL~~Ra~ELv~GG~mvl  207 (359)
T d1m6ex_         190 LFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             HHHHHHHHHBCTTCEEEE
T ss_pred             HHHHHHHHHhcCCcEEEE
Confidence            577777888999999875

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=1  Score=35.35  Aligned_cols=78  Identities=14%  Similarity=0.161  Sum_probs=54.6

Q ss_pred             CCCcEEEEcCCcc---HHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccC
Q 026219          124 TLPLMVDIGSGSG---RFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSS  194 (241)
Q Consensus       124 ~~~~VLDIGCGtG---~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~  194 (241)
                      .+.++|=-|++.|   .++..++++  + .+|+.+|++++.++...+.++..+ .++..+.+|+.+.      +....+ 
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~--G-~~V~l~~r~~~~l~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~i~~-   80 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKL--K-SKLVLWDINKHGLEETAAKCKGLG-AKVHTFVVDCSNREDIYSSAKKVKA-   80 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHH-
Confidence            4677888888877   344555555  4 689999999999998888887665 4789999999863      122222 


Q ss_pred             CCCcEeEEEEeC
Q 026219          195 YPGPLMLVSILC  206 (241)
Q Consensus       195 ~~~~~d~V~~~~  206 (241)
                      ..+.+|.++.+-
T Consensus        81 ~~g~idilinna   92 (244)
T d1yb1a_          81 EIGDVSILVNNA   92 (244)
T ss_dssp             HTCCCSEEEECC
T ss_pred             HcCCCceeEeec
Confidence            135688776543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.19  E-value=0.26  Score=37.23  Aligned_cols=94  Identities=7%  Similarity=-0.017  Sum_probs=58.3

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHHhhccCCCCcEeE
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFKQLVSSYPGPLML  201 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~~~~~~~~~~~d~  201 (241)
                      ++.+||=-|.  |.|.+++.+++.. + .+|+++--|++-.+.+++    .|.+.+--...+..+   .....-+..+|.
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~-G-a~Viat~~s~~k~~~~~~----lGa~~vi~~~~~~~~---~~~~~~~~gvD~  101 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKR-G-YTVEASTGKAAEHDYLRV----LGAKEVLAREDVMAE---RIRPLDKQRWAA  101 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHT-T-CCEEEEESCTTCHHHHHH----TTCSEEEECC------------CCSCCEEE
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHc-C-CceEEecCchHHHHHHHh----cccceeeecchhHHH---HHHHhhccCcCE
Confidence            4677888875  4678899999886 4 689999999888887754    454322111111111   111112467897


Q ss_pred             EEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          202 VSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       202 V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      |+=....               ..++...+.|+|||+++.
T Consensus       102 vid~vgg---------------~~~~~~l~~l~~~Griv~  126 (176)
T d1xa0a2         102 AVDPVGG---------------RTLATVLSRMRYGGAVAV  126 (176)
T ss_dssp             EEECSTT---------------TTHHHHHHTEEEEEEEEE
T ss_pred             EEEcCCc---------------hhHHHHHHHhCCCceEEE
Confidence            6544332               456778999999999863

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=85.70  E-value=1.6  Score=34.32  Aligned_cols=78  Identities=14%  Similarity=0.182  Sum_probs=52.6

Q ss_pred             CCCcEEEEcCCccH---HHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccC
Q 026219          124 TLPLMVDIGSGSGR---FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSS  194 (241)
Q Consensus       124 ~~~~VLDIGCGtG~---~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~  194 (241)
                      +++++|=.|.+.|.   .+..|++.  + .+|+.+|++++.++.+.+.+++.+ .++..+.+|+.+.      ++.....
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~--G-a~V~~~~r~~~~l~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEE--G-TAIALLDMNREALEKAEASVREKG-VEARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46788888876653   34444444  4 689999999999998888887665 3688899999752      2222221


Q ss_pred             CCCcEeEEEEeC
Q 026219          195 YPGPLMLVSILC  206 (241)
Q Consensus       195 ~~~~~d~V~~~~  206 (241)
                      + +.+|.++.+.
T Consensus        80 ~-g~iDilVnna   90 (260)
T d1zema1          80 F-GKIDFLFNNA   90 (260)
T ss_dssp             H-SCCCEEEECC
T ss_pred             h-CCCCeehhhh
Confidence            1 5688776543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=85.65  E-value=1.4  Score=31.49  Aligned_cols=69  Identities=10%  Similarity=-0.104  Sum_probs=40.3

Q ss_pred             CCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhccCCCCcEeEEEEeCCC
Q 026219          133 SGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVSSYPGPLMLVSILCPD  208 (241)
Q Consensus       133 CGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~~~~~~~d~V~~~~~~  208 (241)
                      ||.|.++..+++..  .+ ..++.||.+++......+...   ..++.++.||+.+.  +...   .-...+.+++..++
T Consensus         9 ~G~g~~g~~l~~~L~~~~-~~v~vId~d~~~~~~~~~~~~---~~~~~vi~Gd~~d~~~L~~a---~i~~a~~vi~~~~~   81 (153)
T d1id1a_           9 CGHSILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRL---GDNADVIPGDSNDSSVLKKA---GIDRCRAILALSDN   81 (153)
T ss_dssp             ECCSHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHH---CTTCEEEESCTTSHHHHHHH---TTTTCSEEEECSSC
T ss_pred             ECCCHHHHHHHHHHHHcC-CCEEEEeccchhHHHHHHHhh---cCCcEEEEccCcchHHHHHh---ccccCCEEEEcccc
Confidence            45566666666543  23 579999999875443333222   24689999999863  2111   12345667666554

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=85.38  E-value=0.34  Score=36.11  Aligned_cols=93  Identities=11%  Similarity=0.065  Sum_probs=58.3

Q ss_pred             CCCcEEEEcC--CccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccchHH-hhccCCCCcEe
Q 026219          124 TLPLMVDIGS--GSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVSFK-QLVSSYPGPLM  200 (241)
Q Consensus       124 ~~~~VLDIGC--GtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~~~-~~~~~~~~~~d  200 (241)
                      ++..||=-|.  |.|.+++.|++...  ++|+++.-|++-.+.+++    .|.+.+  +..  .+... ......++.+|
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~~~----lGad~v--i~~--~~~~~~~~~~~~~~gvd   92 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQ----LGASEV--ISR--EDVYDGTLKALSKQQWQ   92 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHH----HTCSEE--EEH--HHHCSSCCCSSCCCCEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHHHh----hcccce--Eec--cchhchhhhcccCCCce
Confidence            3455666663  47889999999854  689999999887777654    465432  211  11100 11111245688


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                      .|+-... .              ..+++..+.|+|+|++++
T Consensus        93 ~vid~vg-g--------------~~~~~~~~~l~~~G~iv~  118 (167)
T d1tt7a2          93 GAVDPVG-G--------------KQLASLLSKIQYGGSVAV  118 (167)
T ss_dssp             EEEESCC-T--------------HHHHHHHTTEEEEEEEEE
T ss_pred             EEEecCc-H--------------HHHHHHHHHhccCceEEE
Confidence            6653332 2              677889999999999863

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.16  E-value=1.6  Score=34.59  Aligned_cols=79  Identities=10%  Similarity=0.029  Sum_probs=52.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccch------HHhhcc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVS------FKQLVS  193 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~------~~~~~~  193 (241)
                      +++++|=.|.+.| +...+++.+  .+ .+|+.+|++++.++.+.+.+++.+..  ++..+.+|+.+.      ++....
T Consensus         4 ~gK~alVTGas~G-IG~aia~~la~~G-a~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           4 SNKTVIITGSSNG-IGRTTAILFAQEG-ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcH-HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4677888886655 444444333  24 68999999999999988888776543  588999999762      222221


Q ss_pred             CCCCcEeEEEEe
Q 026219          194 SYPGPLMLVSIL  205 (241)
Q Consensus       194 ~~~~~~d~V~~~  205 (241)
                      . -+.+|.++.+
T Consensus        82 ~-~g~iDilvnn   92 (272)
T d1xkqa_          82 Q-FGKIDVLVNN   92 (272)
T ss_dssp             H-HSCCCEEEEC
T ss_pred             H-hCCceEEEeC
Confidence            1 1568877655

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=83.82  E-value=2.4  Score=33.06  Aligned_cols=77  Identities=14%  Similarity=0.097  Sum_probs=51.4

Q ss_pred             CCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCCC
Q 026219          125 LPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSYP  196 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~~  196 (241)
                      ++++|=-|.+.| +...+++++  .+ .+|+.+|.+++.++.+.+.+++.+. ++.++.+|+.+.      ++.....+ 
T Consensus         2 gKValITGas~G-IG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~-   77 (257)
T d2rhca1           2 SEVALVTGATSG-IGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERY-   77 (257)
T ss_dssp             CCEEEEESCSSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT-
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHh-
Confidence            455677786554 344444443  24 7899999999999988888877664 688999999763      22222212 


Q ss_pred             CcEeEEEEe
Q 026219          197 GPLMLVSIL  205 (241)
Q Consensus       197 ~~~d~V~~~  205 (241)
                      +.+|.++.+
T Consensus        78 g~iDilVnn   86 (257)
T d2rhca1          78 GPVDVLVNN   86 (257)
T ss_dssp             CSCSEEEEC
T ss_pred             CCCCEEEec
Confidence            568877654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.78  E-value=2.5  Score=32.76  Aligned_cols=74  Identities=12%  Similarity=0.016  Sum_probs=48.1

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch--HHhhccCCCCcE
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS--FKQLVSSYPGPL  199 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~--~~~~~~~~~~~~  199 (241)
                      +++++|=.|.+.| +...+++++  .+ .+|+.+|.+++.++...+.     +.++..+.+|+.+.  ++..+..+ +.+
T Consensus         6 ~GK~~lITGas~G-IG~aia~~la~~G-~~V~~~~r~~~~l~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~-g~i   77 (244)
T d1pr9a_           6 AGRRVLVTGAGKG-IGRGTVQALHATG-ARVVAVSRTQADLDSLVRE-----CPGIEPVCVDLGDWEATERALGSV-GPV   77 (244)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH-----STTCEEEECCTTCHHHHHHHHTTC-CCC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHh-----cCCCeEEEEeCCCHHHHHHHHHHh-CCc
Confidence            4788999997655 444444433  24 6899999999877665432     24678889999763  23334333 578


Q ss_pred             eEEEEe
Q 026219          200 MLVSIL  205 (241)
Q Consensus       200 d~V~~~  205 (241)
                      |.++.+
T Consensus        78 DilVnn   83 (244)
T d1pr9a_          78 DLLVNN   83 (244)
T ss_dssp             CEEEEC
T ss_pred             eEEEec
Confidence            876654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.53  E-value=4.5  Score=31.62  Aligned_cols=112  Identities=17%  Similarity=0.085  Sum_probs=64.6

Q ss_pred             CCCcEEEEcCCccH---HHHHHHHHCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhcc
Q 026219          124 TLPLMVDIGSGSGR---FLIWLARRNPDSGNYLGLEIR-QKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVS  193 (241)
Q Consensus       124 ~~~~VLDIGCGtG~---~~~~la~~~p~~~~v~giDis-~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~  193 (241)
                      +++++|=.|++.|.   ++..|++.  + .+|+.+|.+ ++.++.+.+.+++.+ .++.++.+|+.+.      ++....
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~--G-a~Vvi~~~~~~~~~~~~~~~~~~~g-~~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRR--G-CKVIVNYANSTESAEEVVAAIKKNG-SDAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT--T-CEEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc--C-CEEEEEeCCchHHHHHHHHHHHhhC-CceeeEeCCCCCHHHHHHHHHHHHH
Confidence            46888888887663   44445554  4 689999987 567777777676666 3688999999762      222221


Q ss_pred             CCCCcEeEEEEeCCC----Cchhhhhhhccc-------chHHHHHHHHhccccCCEEE
Q 026219          194 SYPGPLMLVSILCPD----PHFKKKHHKRRV-------VQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       194 ~~~~~~d~V~~~~~~----~~~~~~~~~~r~-------~~~~ll~~l~r~LkpGG~l~  240 (241)
                      . .+.+|.++.+...    +..+........       -.-.+.+.+.+.|+.+|.++
T Consensus        93 ~-~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i  149 (272)
T d1g0oa_          93 I-FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLI  149 (272)
T ss_dssp             H-HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEE
T ss_pred             H-hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccc
Confidence            1 2567866654321    111111101100       12345666777777777654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.15  E-value=1.8  Score=33.98  Aligned_cols=78  Identities=10%  Similarity=0.002  Sum_probs=52.7

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSY  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~  195 (241)
                      +++++|=.|.+. .++..+++++  .+ .+|+.+|.+++.++.+.+.+++.+ .++.++.+|+.+.      ++.....+
T Consensus        10 ~gK~alITGas~-GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~l~~~g-~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          10 DGKCAIITGAGA-GIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            467788777554 4555555543  24 789999999999998888887766 4688899999763      12222111


Q ss_pred             CCcEeEEEEe
Q 026219          196 PGPLMLVSIL  205 (241)
Q Consensus       196 ~~~~d~V~~~  205 (241)
                       +.+|.++.+
T Consensus        87 -g~iDilvnn   95 (255)
T d1fmca_          87 -GKVDILVNN   95 (255)
T ss_dssp             -SSCCEEEEC
T ss_pred             -CCCCEeeeC
Confidence             568876654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=83.10  E-value=2  Score=34.07  Aligned_cols=61  Identities=8%  Similarity=0.026  Sum_probs=42.9

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASV  186 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~  186 (241)
                      +++++|=.|++.| ++..+++.+  .+ .+|+.+|.+++.++.+.+.+....-.++.++.+|+.+
T Consensus        24 ~gK~alITGas~G-IG~aiA~~la~~G-a~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~   86 (294)
T d1w6ua_          24 QGKVAFITGGGTG-LGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD   86 (294)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccC
Confidence            4688999998766 444444433  24 6899999999888776665544333468889999976

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=83.02  E-value=2.8  Score=30.28  Aligned_cols=97  Identities=15%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             CcEEEEcCCccHHHH--HHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCC--EEEEEccccchHHhhccCCCCcEe
Q 026219          126 PLMVDIGSGSGRFLI--WLARRNPDSGNYLGLEIRQKLVKRAEFWVQEL-ALSN--IHFLFANASVSFKQLVSSYPGPLM  200 (241)
Q Consensus       126 ~~VLDIGCGtG~~~~--~la~~~p~~~~v~giDis~~~v~~a~~~~~~~-~l~n--i~~~~~D~~~~~~~~~~~~~~~~d  200 (241)
                      .+|.=||+|.-...+  .|+++  + .+|+.+|.+++-++..++.-... ..+.  ................    ...|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~--G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~aD   74 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK--G-QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDAD   74 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCS
T ss_pred             CEEEEECccHHHHHHHHHHHHC--C-CEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----cCCC
Confidence            456678888544333  33443  4 58999999998877765421100 0001  1111111111011111    3457


Q ss_pred             EEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEE
Q 026219          201 LVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVY  240 (241)
Q Consensus       201 ~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~  240 (241)
                      .|++.-+...           .+.+++++...|+++-.++
T Consensus        75 ~iii~v~~~~-----------~~~~~~~i~~~l~~~~~iv  103 (184)
T d1bg6a2          75 VILIVVPAIH-----------HASIAANIASYISEGQLII  103 (184)
T ss_dssp             EEEECSCGGG-----------HHHHHHHHGGGCCTTCEEE
T ss_pred             EEEEEEchhH-----------HHHHHHHhhhccCCCCEEE
Confidence            7776654331           1588999999999887654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.96  E-value=2  Score=34.02  Aligned_cols=79  Identities=9%  Similarity=0.020  Sum_probs=53.3

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccch------HHhhcc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASVS------FKQLVS  193 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~~------~~~~~~  193 (241)
                      +++++|=.|++.| +...+++++  .+ .+|+.+|++++.++.+.+.+++.+..  ++..+.+|+.+.      ++....
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           3 SGKSVIITGSSNG-IGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            3677888887766 344444333  24 78999999999999988888877653  689999998763      122221


Q ss_pred             CCCCcEeEEEEe
Q 026219          194 SYPGPLMLVSIL  205 (241)
Q Consensus       194 ~~~~~~d~V~~~  205 (241)
                      . -+.+|.++.+
T Consensus        81 ~-~G~iDilVnn   91 (274)
T d1xhla_          81 K-FGKIDILVNN   91 (274)
T ss_dssp             H-HSCCCEEEEC
T ss_pred             H-cCCceEEEee
Confidence            1 1567877654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.96  E-value=2  Score=33.68  Aligned_cols=61  Identities=11%  Similarity=0.026  Sum_probs=44.6

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCC--CEEEEEccccc
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALS--NIHFLFANASV  186 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~--ni~~~~~D~~~  186 (241)
                      +++++|=.|++.| +...+++++  .+ .+|+.+|++++.++.+.+.++..+..  ++.++.+|+.+
T Consensus         4 ~gKvalVTGas~G-IG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~   68 (264)
T d1spxa_           4 AEKVAIITGSSNG-IGRATAVLFAREG-AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT   68 (264)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCC
Confidence            3567777786655 444444433  25 78999999999999988888776643  68999999975

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.94  E-value=3.2  Score=30.36  Aligned_cols=70  Identities=10%  Similarity=0.119  Sum_probs=41.7

Q ss_pred             cEEEEcCCc-cHHHHHHHHHCCCCcEEEEE-eCCHHHHHHHHHHHHHhCCCC-EEEEEccccchHHhhccCCCCcEeEEE
Q 026219          127 LMVDIGSGS-GRFLIWLARRNPDSGNYLGL-EIRQKLVKRAEFWVQELALSN-IHFLFANASVSFKQLVSSYPGPLMLVS  203 (241)
Q Consensus       127 ~VLDIGCGt-G~~~~~la~~~p~~~~v~gi-Dis~~~v~~a~~~~~~~~l~n-i~~~~~D~~~~~~~~~~~~~~~~d~V~  203 (241)
                      +|.=||||. |..-....+..++ .+++|+ |.+++..+.   ..++.+.+. ..+ ..|..+    ++.  +..+|.|+
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~-~~i~ai~d~~~~~~~~---~~~~~~~~~~~~~-~~~~~~----ll~--~~~iD~v~   71 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPN-ATISGVASRSLEKAKA---FATANNYPESTKI-HGSYES----LLE--DPEIDALY   71 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTT-EEEEEEECSSHHHHHH---HHHHTTCCTTCEE-ESSHHH----HHH--CTTCCEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCC-CEEEEEEeCCcccccc---chhccccccceee-cCcHHH----hhh--ccccceee
Confidence            466789995 6655555566777 789876 888765443   334455432 333 345544    233  34578887


Q ss_pred             EeCC
Q 026219          204 ILCP  207 (241)
Q Consensus       204 ~~~~  207 (241)
                      +.-|
T Consensus        72 I~tp   75 (184)
T d1ydwa1          72 VPLP   75 (184)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            6543

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=82.72  E-value=8.6  Score=30.76  Aligned_cols=108  Identities=11%  Similarity=0.020  Sum_probs=65.8

Q ss_pred             CCcEEEEcCCccHHHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC---CCEEEEEccccchH-HhhccC-CCCcE
Q 026219          125 LPLMVDIGSGSGRFLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL---SNIHFLFANASVSF-KQLVSS-YPGPL  199 (241)
Q Consensus       125 ~~~VLDIGCGtG~~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l---~ni~~~~~D~~~~~-~~~~~~-~~~~~  199 (241)
                      ...|+.+|||-=.-...+. ..++ ..++=||. |++++.-++.+++.+.   .+..++..|+.+.+ +.+... ++...
T Consensus        90 ~~qvV~LGaGlDTr~~Rl~-~~~~-~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~  166 (297)
T d2uyoa1          90 IRQFVILASGLDSRAYRLD-WPTG-TTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA  166 (297)
T ss_dssp             CCEEEEETCTTCCHHHHSC-CCTT-CEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred             CCeEEEeCcccCChhhhcC-CCcC-ceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence            3457779999888776652 2345 68888885 8888888888877653   25678888887532 222211 22222


Q ss_pred             -eEEEEeCCCCchhhhhhhcccchHHHHHHHHhccccCCEEEc
Q 026219          200 -MLVSILCPDPHFKKKHHKRRVVQKPLVDSIIDYLMPGGKVYF  241 (241)
Q Consensus       200 -d~V~~~~~~~~~~~~~~~~r~~~~~ll~~l~r~LkpGG~l~~  241 (241)
                       .+++......+....      ...++++.+.....||+.|++
T Consensus       167 ptl~i~EGvl~YL~~~------~~~~ll~~i~~~~~~GS~l~~  203 (297)
T d2uyoa1         167 RTAWLAEGLLMYLPAT------AQDGLFTEIGGLSAVGSRIAV  203 (297)
T ss_dssp             CEEEEECSCGGGSCHH------HHHHHHHHHHHTCCTTCEEEE
T ss_pred             CEEEEEccccccCCHH------HHHHHHHHHHHhCCCCCEEEE
Confidence             222222111111111      125999999999999998864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.18  E-value=2.5  Score=33.02  Aligned_cols=77  Identities=13%  Similarity=-0.008  Sum_probs=49.5

Q ss_pred             CCCcEEEEcCCccH---HHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCEEEEEccccch------HHhhcc
Q 026219          124 TLPLMVDIGSGSGR---FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQE-LALSNIHFLFANASVS------FKQLVS  193 (241)
Q Consensus       124 ~~~~VLDIGCGtG~---~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~-~~l~ni~~~~~D~~~~------~~~~~~  193 (241)
                      +++++|=.|.+.|.   .+..|++.  + .+|+.+|++++.++.+.+.+.+ .+ .++.++.+|+.+.      ++....
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~--G-a~V~i~~r~~~~~~~~~~~l~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEA--G-CSVVVASRNLEEASEAAQKLTEKYG-VETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHHHhC-CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            46788889977662   33444444  4 7899999999887766655543 34 4688899999763      222221


Q ss_pred             CCCCcEeEEEEe
Q 026219          194 SYPGPLMLVSIL  205 (241)
Q Consensus       194 ~~~~~~d~V~~~  205 (241)
                      . -+.+|.++.+
T Consensus        80 ~-~g~iDiLVnn   90 (251)
T d1vl8a_          80 K-FGKLDTVVNA   90 (251)
T ss_dssp             H-HSCCCEEEEC
T ss_pred             H-cCCCCEEEEC
Confidence            1 1568877654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=81.88  E-value=3.3  Score=32.39  Aligned_cols=78  Identities=17%  Similarity=0.074  Sum_probs=52.2

Q ss_pred             CCCcEEEEcCCccH---HHHHHHHHCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCEEEEEccccch------HHhhcc
Q 026219          124 TLPLMVDIGSGSGR---FLIWLARRNPDSGNYLGLEIRQKLVKRAEFWVQELAL-SNIHFLFANASVS------FKQLVS  193 (241)
Q Consensus       124 ~~~~VLDIGCGtG~---~~~~la~~~p~~~~v~giDis~~~v~~a~~~~~~~~l-~ni~~~~~D~~~~------~~~~~~  193 (241)
                      +++++|=.|.+.|.   ++..|++.  + .+|+.+|++++.++.+.+.+.+.+. .++..+.+|+.+.      ++....
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~--G-a~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAE--G-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence            35778888877663   44455554  4 7899999999998888777766543 3688899998763      122211


Q ss_pred             CCCCcEeEEEEe
Q 026219          194 SYPGPLMLVSIL  205 (241)
Q Consensus       194 ~~~~~~d~V~~~  205 (241)
                      . -+.+|.++.+
T Consensus        80 ~-~G~iDiLVnn   90 (258)
T d1iy8a_          80 R-FGRIDGFFNN   90 (258)
T ss_dssp             H-HSCCSEEEEC
T ss_pred             H-hCCCCEEEEC
Confidence            1 1568876654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=80.90  E-value=3.5  Score=32.09  Aligned_cols=74  Identities=12%  Similarity=0.007  Sum_probs=49.0

Q ss_pred             EEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCCCCcE
Q 026219          128 MVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSYPGPL  199 (241)
Q Consensus       128 VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~~~~~  199 (241)
                      +|=.|.+.| ++..+++.+  .+ .+|+.+|++++.++.+.+.+++.+ .++.++.+|+.+.      ++..... -+.+
T Consensus         4 alITGas~G-IG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~i~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~i   79 (255)
T d1gega_           4 ALVTGAGQG-IGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAG-GHAVAVKVDVSDRDQVFAAVEQARKT-LGGF   79 (255)
T ss_dssp             EEEETTTSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHH-TTCC
T ss_pred             EEEcCCccH-HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHH-hCCc
Confidence            455676544 444444443  24 789999999999998888887766 3688899999863      2222221 2568


Q ss_pred             eEEEEe
Q 026219          200 MLVSIL  205 (241)
Q Consensus       200 d~V~~~  205 (241)
                      |.++.+
T Consensus        80 DilVnn   85 (255)
T d1gega_          80 DVIVNN   85 (255)
T ss_dssp             CEEEEC
T ss_pred             cEEEec
Confidence            877654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=80.63  E-value=2  Score=33.85  Aligned_cols=78  Identities=10%  Similarity=0.029  Sum_probs=50.2

Q ss_pred             CCCcEEEEcCCccHHHHHHHHHC--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCEEEEEccccch------HHhhccCC
Q 026219          124 TLPLMVDIGSGSGRFLIWLARRN--PDSGNYLGLEIRQKLVKRAEFWVQELALSNIHFLFANASVS------FKQLVSSY  195 (241)
Q Consensus       124 ~~~~VLDIGCGtG~~~~~la~~~--p~~~~v~giDis~~~v~~a~~~~~~~~l~ni~~~~~D~~~~------~~~~~~~~  195 (241)
                      +++++|=.|.+.| +...+++++  .+ .+|+.+|++++.++.+.+.+..  ..++.++.+|+.+.      ++..... 
T Consensus         5 ~gKvalITGas~G-IG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~-   79 (268)
T d2bgka1           5 QDKVAIITGGAGG-IGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIGS--PDVISFVHCDVTKDEDVRNLVDTTIAK-   79 (268)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCC--TTTEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhcC--CCceEEEEccCCCHHHHHHHHHHHHHH-
Confidence            4678888997766 444444443  24 7899999999888777665532  23588899999763      2222221 


Q ss_pred             CCcEeEEEEeC
Q 026219          196 PGPLMLVSILC  206 (241)
Q Consensus       196 ~~~~d~V~~~~  206 (241)
                      -+.+|.++.+.
T Consensus        80 ~g~iD~lVnnA   90 (268)
T d2bgka1          80 HGKLDIMFGNV   90 (268)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCcceecccc
Confidence            15678776543