Citrus Sinensis ID: 026247

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
MELKPQVECIPQQEKQQLLENIPQQEREGQLEDIPQQEKQPQQQQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRSCGNNEDSDNDNKNETSNYKSSTNSAFSKRKALSAEAPERRPKMKEVAVV
ccccccccccccHHHHHHHHcccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHcccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccc
ccccHccccccccccHHHHHHccHcccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEccHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHcHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEc
melkpqvecipqQEKQQLLENIpqqeregqledipqqekqpqqqqQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLidnlennsnaspstlstkkeESRVNLIMtdycmpgmtgydLLKRLkvsswkdvpvvvmssenvpsrVTMCLEEGaeefllkpvrlsdleklqprllkspnrscgnnedsdndnknetsnyksstnsafskrkalsaeaperrpkmkEVAVV
melkpqvecipqqeKQQLLENIPQQEREGQLEDIPQQEKQPQQQQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDnlennsnaspstlstkkeesRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVvmssenvpsRVTMCLEEGAEEFLLKPVRLSDLEKLqprllkspnrscgnnedsdndnknetsnyksstnsafskrkalsaeaperrpkmkevavv
MELKPQVECIPQQEKQQLLENIPQQEREGQLEDIpqqekqpqqqqqeTFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRSCGnnedsdndnknetsnYKSSTNSAFSKRKALSAEAPERRPKMKEVAVV
************************************************FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNL*******************VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRL******************************************************************
**************************************************VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNA*******KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL*************************************************M*E*AVV
MELKPQVECIPQQEKQQLLENIPQ**********************ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSN***********ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS*****************************************************
********************************************QQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGL********************ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN*********************************************K*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELKPQVECIPQQEKQQLLENIPQQEREGQLEDIPQQEKQPQQQQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRSCGNNEDSDNDNKNETSNYKSSTNSAFSKRKALSAEAPERRPKMKEVAVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query241 2.2.26 [Sep-21-2011]
O80366234 Two-component response re yes no 0.580 0.598 0.631 1e-46
O80365225 Two-component response re no no 0.572 0.613 0.617 5e-45
Q9SB04184 Two-component response re no no 0.572 0.75 0.567 2e-40
O82798259 Two-component response re no no 0.564 0.525 0.557 2e-38
Q9ZWS9231 Two-component response re no no 0.589 0.614 0.529 3e-38
Q9ZWS6186 Two-component response re no no 0.535 0.693 0.585 9e-38
Q9ZWS7206 Two-component response re no no 0.560 0.655 0.520 4e-37
Q9FPR6153 Two-component response re no no 0.551 0.869 0.524 2e-35
Q9SHC2164 Two-component response re no no 0.618 0.908 0.477 3e-35
Q7G8V2206 Two-component response re no no 0.539 0.631 0.503 6e-35
>sp|O80366|ARR9_ARATH Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1 Back     alignment and function desciption
 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 113/141 (80%), Gaps = 1/141 (0%)

Query: 49  FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
           FHVLAVDDSL DRK++E LL+ SS QVT VDSG KALE+LGL  + ++N   + S     
Sbjct: 9   FHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAFSKAPVN 68

Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEE 167
            +   VNLI+TDYCMPGMTGYDLLK++K SS ++D+PVV+MSSENVP+R++ CLEEGAEE
Sbjct: 69  HQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEE 128

Query: 168 FLLKPVRLSDLEKLQPRLLKS 188
           F LKPVRL+DL KL+P ++K+
Sbjct: 129 FFLKPVRLADLNKLKPHMMKT 149
Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Type-A response regulators seem to act as negative regulators of the cytokinin signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|O80365|ARR8_ARATH Two-component response regulator ARR8 OS=Arabidopsis thaliana GN=ARR8 PE=1 SV=1 Back     alignment and function description
>sp|Q9SB04|ARR5_ARATH Two-component response regulator ARR5 OS=Arabidopsis thaliana GN=ARR5 PE=1 SV=2 Back     alignment and function description
>sp|O82798|ARR4_ARATH Two-component response regulator ARR4 OS=Arabidopsis thaliana GN=ARR4 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZWS9|ARR3_ARATH Two-component response regulator ARR3 OS=Arabidopsis thaliana GN=ARR3 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWS6|ARR6_ARATH Two-component response regulator ARR6 OS=Arabidopsis thaliana GN=ARR6 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZWS7|ARR7_ARATH Two-component response regulator ARR7 OS=Arabidopsis thaliana GN=ARR7 PE=1 SV=1 Back     alignment and function description
>sp|Q9FPR6|ARR17_ARATH Two-component response regulator ARR17 OS=Arabidopsis thaliana GN=ARR17 PE=2 SV=1 Back     alignment and function description
>sp|Q9SHC2|ARR16_ARATH Two-component response regulator ARR16 OS=Arabidopsis thaliana GN=ARR16 PE=1 SV=1 Back     alignment and function description
>sp|Q7G8V2|ARR15_ARATH Two-component response regulator ARR15 OS=Arabidopsis thaliana GN=ARR15 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
309951230242 putative A-type response regulator 3 [Po 0.900 0.896 0.618 6e-67
224066817243 type-a response regulator [Populus trich 0.850 0.843 0.628 6e-65
388511259224 unknown [Lotus japonicus] 0.800 0.861 0.645 2e-60
388505720224 unknown [Lotus japonicus] 0.800 0.861 0.640 2e-59
359492520240 PREDICTED: two-component response regula 0.804 0.808 0.588 5e-58
302141801232 unnamed protein product [Vitis vinifera] 0.813 0.844 0.584 3e-57
356515915232 PREDICTED: two-component response regula 0.792 0.823 0.599 1e-55
217075290235 unknown [Medicago truncatula] gi|3884938 0.834 0.855 0.587 2e-55
388511879235 unknown [Medicago truncatula] 0.834 0.855 0.587 2e-55
255646817235 unknown [Glycine max] 0.780 0.8 0.600 3e-55
>gi|309951230|emb|CBX43985.1| putative A-type response regulator 3 [Populus x canadensis] Back     alignment and taxonomy information
 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 138/223 (61%), Positives = 176/223 (78%), Gaps = 6/223 (2%)

Query: 24  QQEREGQLEDIPQQEKQPQQQQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDK 83
           QQ+ EG+ E   QQ  Q  +++++ FHVLAVDDS IDRK+LE LL+VSSYQVT VDSGDK
Sbjct: 21  QQKEEGE-EKHKQQRDQEGEEEEKHFHVLAVDDSFIDRKLLERLLKVSSYQVTFVDSGDK 79

Query: 84  ALEYLGLIDNLEN-NSNASPSTLSTKKEES-RVNLIMTDYCMPGMTGYDLLKRLKVSSWK 141
           ALEYLGL+D+++N N+ +S S+  + ++E  +VNLIMTDYCMPGM+GYDLLKR+K S WK
Sbjct: 80  ALEYLGLLDSIDNVNATSSSSSSQSPQQEGMKVNLIMTDYCMPGMSGYDLLKRVKGSYWK 139

Query: 142 DVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRSCGNNEDSDN 201
           DVPVVVMSSEN+PSR+ MCLEEGAEEFLLKP++LSD+EKLQ  LLKS ++      D ++
Sbjct: 140 DVPVVVMSSENIPSRIRMCLEEGAEEFLLKPLQLSDVEKLQTHLLKSLDKYSSKRIDDNS 199

Query: 202 ---DNKNETSNYKSSTNSAFSKRKALSAEAPERRPKMKEVAVV 241
              D+ N T + KS++N+  SKRKALS E  +RRPKMK +AVV
Sbjct: 200 FNTDSSNITVSNKSNSNNIVSKRKALSPEIEDRRPKMKGLAVV 242

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224066817|ref|XP_002302230.1| type-a response regulator [Populus trichocarpa] gi|222843956|gb|EEE81503.1| type-a response regulator [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388511259|gb|AFK43691.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388505720|gb|AFK40926.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|359492520|ref|XP_002284504.2| PREDICTED: two-component response regulator ARR9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302141801|emb|CBI19004.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356515915|ref|XP_003526642.1| PREDICTED: two-component response regulator ARR9-like [Glycine max] Back     alignment and taxonomy information
>gi|217075290|gb|ACJ86005.1| unknown [Medicago truncatula] gi|388493820|gb|AFK34976.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388511879|gb|AFK44001.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255646817|gb|ACU23880.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
UNIPROTKB|Q4GZK7232 rr4 "Type A response regulator 0.572 0.594 0.685 7.1e-45
UNIPROTKB|Q4GZK2201 rr9 "Type A response regulator 0.751 0.900 0.525 1.5e-44
TAIR|locus:2080590234 ARR9 "response regulator 9" [A 0.580 0.598 0.631 5.7e-43
TAIR|locus:2040282225 RR3 "response regulator 3" [Ar 0.568 0.608 0.633 6.6e-42
TAIR|locus:2097870184 RR5 "response regulator 5" [Ar 0.556 0.728 0.583 1.5e-37
TAIR|locus:2194584259 ARR4 "response regulator 4" [A 0.560 0.521 0.554 1.5e-35
TAIR|locus:2170723186 ARR6 "response regulator 6" [A 0.531 0.688 0.589 2.4e-35
TAIR|locus:2011286206 ARR7 "response regulator 7" [A 0.556 0.650 0.524 6.5e-35
TAIR|locus:2025911231 ARR3 "response regulator 3" [A 0.531 0.554 0.561 6.5e-35
UNIPROTKB|Q4GZK5170 rr6 "Type A response regulator 0.298 0.423 0.684 3e-33
UNIPROTKB|Q4GZK7 rr4 "Type A response regulator 4" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 96/140 (68%), Positives = 117/140 (83%)

Query:    49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
             FHVLAVDDSLIDRK++E LL+ SSYQVT VDSG KALE LGL D   ++S++SPS+ S  
Sbjct:    10 FHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDE-GDDSSSSPSSSSPD 68

Query:   109 KEESRVNLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
              +E  VNLI+TDYCMPGMTGYDLLKR+K  SS KD+PVV+MSSENVP+R+  CLE+GAEE
Sbjct:    69 HQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEE 128

Query:   168 FLLKPVRLSDLEKLQPRLLK 187
             F LKPV+L+D++KL+  LLK
Sbjct:   129 FFLKPVKLADMKKLKSHLLK 148
GO:0009735 "response to cytokinin stimulus" evidence=IC
UNIPROTKB|Q4GZK2 rr9 "Type A response regulator 9" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2080590 ARR9 "response regulator 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040282 RR3 "response regulator 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097870 RR5 "response regulator 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194584 ARR4 "response regulator 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170723 ARR6 "response regulator 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011286 ARR7 "response regulator 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025911 ARR3 "response regulator 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q4GZK5 rr6 "Type A response regulator 6" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015406001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (212 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
PLN03029222 PLN03029, PLN03029, type-a response regulator prot 5e-55
cd00156113 cd00156, REC, Signal receiver domain; originally t 3e-24
pfam00072111 pfam00072, Response_reg, Response regulator receiv 1e-21
COG0784130 COG0784, CheY, FOG: CheY-like receiver [Signal tra 8e-20
COG2204 464 COG2204, AtoC, Response regulator containing CheY- 7e-15
COG0745229 COG0745, OmpR, Response regulators consisting of a 9e-15
TIGR01818 463 TIGR01818, ntrC, nitrogen regulation protein NR(I) 4e-12
COG3706 435 COG3706, PleD, Response regulator containing a Che 6e-12
COG3437 360 COG3437, COG3437, Response regulator containing a 2e-11
COG2197211 COG2197, CitB, Response regulator containing a Che 2e-10
CHL00148240 CHL00148, orf27, Ycf27; Reviewed 3e-09
PRK15347921 PRK15347, PRK15347, two component system sensor ki 5e-09
COG4753 475 COG4753, COG4753, Response regulator containing Ch 6e-09
PRK09581 457 PRK09581, pleD, response regulator PleD; Reviewed 1e-08
PRK10841924 PRK10841, PRK10841, hybrid sensory kinase in two-c 6e-08
COG4566202 COG4566, TtrR, Response regulator [Signal transduc 2e-07
PRK09390202 PRK09390, fixJ, response regulator FixJ; Provision 4e-07
smart0044855 smart00448, REC, cheY-homologous receiver domain 1e-06
PRK10365 441 PRK10365, PRK10365, transcriptional regulatory pro 3e-06
TIGR02154226 TIGR02154, PhoB, phosphate regulon transcriptional 2e-05
PRK10693 303 PRK10693, PRK10693, response regulator of RpoS; Pr 3e-05
PRK10610129 PRK10610, PRK10610, chemotaxis regulatory protein 1e-04
PRK10651216 PRK10651, PRK10651, transcriptional regulator NarL 1e-04
PRK11361 457 PRK11361, PRK11361, acetoacetate metabolism regula 2e-04
PRK11517223 PRK11517, PRK11517, transcriptional regulatory pro 2e-04
TIGR01387218 TIGR01387, cztR_silR_copR, heavy metal response re 2e-04
PRK10529225 PRK10529, PRK10529, DNA-binding transcriptional ac 3e-04
PRK10923 469 PRK10923, glnG, nitrogen regulation protein NR(I); 6e-04
PRK15479221 PRK15479, PRK15479, transcriptional regulatory pro 6e-04
COG3947 361 COG3947, COG3947, Response regulator containing Ch 7e-04
TIGR02956968 TIGR02956, TMAO_torS, TMAO reductase sytem sensor 7e-04
PRK10161229 PRK10161, PRK10161, transcriptional regulator PhoB 8e-04
PRK10766221 PRK10766, PRK10766, DNA-binding transcriptional re 0.001
PRK09836227 PRK09836, PRK09836, DNA-binding transcriptional ac 0.003
PRK10955232 PRK10955, PRK10955, DNA-binding transcriptional re 0.004
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional Back     alignment and domain information 
 Score =  175 bits (445), Expect = 5e-55
 Identities = 101/188 (53%), Positives = 138/188 (73%), Gaps = 4/188 (2%)

Query: 49  FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
           FHVLAVDDSLIDRK++E LL+ SSYQVT VDSG KAL++LGL ++  +N + +PS     
Sbjct: 9   FHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPD-TPSVSPNS 67

Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
            +E  VNLI+TDYCMPGMTGYDLLK++K  SS +++PVV+MSSENVPSR+T CLEEGAEE
Sbjct: 68  HQEVEVNLIITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEE 127

Query: 168 FLLKPVRLSDLEKLQPRLLKSPNRSCGNNEDSDNDNKNETSNYKSSTNSAFSKRKALSAE 227
           F LKPV+LSDL +L+P ++K+ +++    E+ +   K E S  +S      S+ +  S  
Sbjct: 128 FFLKPVQLSDLNRLKPHMMKTKSKN-QKQENQEKQEKLEESEIQSEKQEQPSQ-QPQSQP 185

Query: 228 APERRPKM 235
            P+++P+ 
Sbjct: 186 QPQQQPQQ 193

Length = 222
>gnl|CDD|238088 cd00156, REC, Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers Back     alignment and domain information
>gnl|CDD|200976 pfam00072, Response_reg, Response regulator receiver domain Back     alignment and domain information
>gnl|CDD|223855 COG0784, CheY, FOG: CheY-like receiver [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|225114 COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|223816 COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>gnl|CDD|233585 TIGR01818, ntrC, nitrogen regulation protein NR(I) Back     alignment and domain information
>gnl|CDD|226229 COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|225971 COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|225107 COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>gnl|CDD|214376 CHL00148, orf27, Ycf27; Reviewed Back     alignment and domain information
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>gnl|CDD|227095 COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236577 PRK09581, pleD, response regulator PleD; Reviewed Back     alignment and domain information
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>gnl|CDD|226932 COG4566, TtrR, Response regulator [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|181815 PRK09390, fixJ, response regulator FixJ; Provisional Back     alignment and domain information
>gnl|CDD|214668 smart00448, REC, cheY-homologous receiver domain Back     alignment and domain information
>gnl|CDD|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>gnl|CDD|131209 TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB Back     alignment and domain information
>gnl|CDD|182652 PRK10693, PRK10693, response regulator of RpoS; Provisional Back     alignment and domain information
>gnl|CDD|170568 PRK10610, PRK10610, chemotaxis regulatory protein CheY; Provisional Back     alignment and domain information
>gnl|CDD|182619 PRK10651, PRK10651, transcriptional regulator NarL; Provisional Back     alignment and domain information
>gnl|CDD|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>gnl|CDD|183172 PRK11517, PRK11517, transcriptional regulatory protein YedW; Provisional Back     alignment and domain information
>gnl|CDD|130454 TIGR01387, cztR_silR_copR, heavy metal response regulator Back     alignment and domain information
>gnl|CDD|182522 PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional Back     alignment and domain information
>gnl|CDD|182842 PRK10923, glnG, nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>gnl|CDD|185376 PRK15479, PRK15479, transcriptional regulatory protein TctD; Provisional Back     alignment and domain information
>gnl|CDD|226456 COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS Back     alignment and domain information
>gnl|CDD|182277 PRK10161, PRK10161, transcriptional regulator PhoB; Provisional Back     alignment and domain information
>gnl|CDD|182711 PRK10766, PRK10766, DNA-binding transcriptional regulator TorR; Provisional Back     alignment and domain information
>gnl|CDD|182102 PRK09836, PRK09836, DNA-binding transcriptional activator CusR; Provisional Back     alignment and domain information
>gnl|CDD|182864 PRK10955, PRK10955, DNA-binding transcriptional regulator CpxR; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 241
COG0745229 OmpR Response regulators consisting of a CheY-like 99.91
COG4753 475 Response regulator containing CheY-like receiver d 99.86
COG2204 464 AtoC Response regulator containing CheY-like recei 99.86
PF00072112 Response_reg: Response regulator receiver domain; 99.86
COG4566202 TtrR Response regulator [Signal transduction mecha 99.85
COG2197211 CitB Response regulator containing a CheY-like rec 99.82
KOG0519786 consensus Sensory transduction histidine kinase [S 99.82
COG0784130 CheY FOG: CheY-like receiver [Signal transduction 99.8
COG4565224 CitB Response regulator of citrate/malate metaboli 99.8
COG3437 360 Response regulator containing a CheY-like receiver 99.79
PLN03029222 type-a response regulator protein; Provisional 99.78
PRK10046225 dpiA two-component response regulator DpiA; Provis 99.77
PRK10816223 DNA-binding transcriptional regulator PhoP; Provis 99.76
PRK10841924 hybrid sensory kinase in two-component regulatory 99.75
PRK10529225 DNA-binding transcriptional activator KdpE; Provis 99.75
PRK10643222 DNA-binding transcriptional regulator BasR; Provis 99.75
PRK09836227 DNA-binding transcriptional activator CusR; Provis 99.75
COG3706 435 PleD Response regulator containing a CheY-like rec 99.74
PRK11173237 two-component response regulator; Provisional 99.74
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 99.74
PRK09468239 ompR osmolarity response regulator; Provisional 99.74
PRK10336219 DNA-binding transcriptional regulator QseB; Provis 99.73
TIGR02154226 PhoB phosphate regulon transcriptional regulatory 99.73
PRK10161229 transcriptional regulator PhoB; Provisional 99.73
PRK10766221 DNA-binding transcriptional regulator TorR; Provis 99.73
PRK10840216 transcriptional regulator RcsB; Provisional 99.73
PRK11083228 DNA-binding response regulator CreB; Provisional 99.72
PRK15347921 two component system sensor kinase SsrA; Provision 99.72
COG3947 361 Response regulator containing CheY-like receiver a 99.72
PRK10430239 DNA-binding transcriptional activator DcuR; Provis 99.72
PRK10955232 DNA-binding transcriptional regulator CpxR; Provis 99.72
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 99.72
TIGR03787227 marine_sort_RR proteobacterial dedicated sortase s 99.72
PRK10701240 DNA-binding transcriptional regulator RstA; Provis 99.71
PRK11517223 transcriptional regulatory protein YedW; Provision 99.71
CHL00148240 orf27 Ycf27; Reviewed 99.71
PRK09483217 response regulator; Provisional 99.7
TIGR01387218 cztR_silR_copR heavy metal response regulator. Mem 99.7
PRK09958204 DNA-binding transcriptional activator EvgA; Provis 99.7
PRK13856241 two-component response regulator VirG; Provisional 99.7
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 99.7
TIGR02875262 spore_0_A sporulation transcription factor Spo0A. 99.69
PRK11091779 aerobic respiration control sensor protein ArcB; P 99.68
PRK10365 441 transcriptional regulatory protein ZraR; Provision 99.67
COG4567182 Response regulator consisting of a CheY-like recei 99.67
PRK09935210 transcriptional regulator FimZ; Provisional 99.67
PRK14084246 two-component response regulator; Provisional 99.67
PRK10360196 DNA-binding transcriptional activator UhpA; Provis 99.67
PRK15115 444 response regulator GlrR; Provisional 99.67
PRK09581 457 pleD response regulator PleD; Reviewed 99.66
PRK10923 469 glnG nitrogen regulation protein NR(I); Provisiona 99.66
PRK11361 457 acetoacetate metabolism regulatory protein AtoC; P 99.65
PRK099591197 hybrid sensory histidine kinase in two-component r 99.64
PRK10710240 DNA-binding transcriptional regulator BaeR; Provis 99.64
PRK15479221 transcriptional regulatory protein TctD; Provision 99.64
PRK11697238 putative two-component response-regulatory protein 99.64
TIGR02915 445 PEP_resp_reg putative PEP-CTERM system response re 99.63
TIGR01818 463 ntrC nitrogen regulation protein NR(I). This model 99.63
PRK09390202 fixJ response regulator FixJ; Provisional 99.62
PRK10100216 DNA-binding transcriptional regulator CsgD; Provis 99.62
PRK13435145 response regulator; Provisional 99.6
PRK12555 337 chemotaxis-specific methylesterase; Provisional 99.59
PRK09581 457 pleD response regulator PleD; Reviewed 99.59
PRK10610129 chemotaxis regulatory protein CheY; Provisional 99.58
PRK13558 665 bacterio-opsin activator; Provisional 99.58
PRK11475207 DNA-binding transcriptional activator BglJ; Provis 99.57
PRK10403215 transcriptional regulator NarP; Provisional 99.56
PRK10651216 transcriptional regulator NarL; Provisional 99.56
PRK15369211 two component system sensor kinase SsrB; Provision 99.56
PRK00742 354 chemotaxis-specific methylesterase; Provisional 99.56
PRK15411207 rcsA colanic acid capsular biosynthesis activation 99.55
COG2201 350 CheB Chemotaxis response regulator containing a Ch 99.49
PRK09191261 two-component response regulator; Provisional 99.48
PRK13837828 two-component VirA-like sensor kinase; Provisional 99.47
cd00156113 REC Signal receiver domain; originally thought to 99.45
COG3707194 AmiR Response regulator with putative antiterminat 99.43
PRK13557540 histidine kinase; Provisional 99.4
PRK10693 303 response regulator of RpoS; Provisional 99.33
PRK15029 755 arginine decarboxylase; Provisional 99.21
COG3279244 LytT Response regulator of the LytR/AlgR family [T 99.19
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 98.74
COG3706 435 PleD Response regulator containing a CheY-like rec 98.34
PF06490109 FleQ: Flagellar regulatory protein FleQ; InterPro: 98.05
smart0044855 REC cheY-homologous receiver domain. CheY regulate 98.0
cd02071122 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin 97.4
PRK02261137 methylaspartate mutase subunit S; Provisional 97.33
PF03709115 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal 96.96
PRK10618894 phosphotransfer intermediate protein in two-compon 96.93
TIGR00640132 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal 96.87
cd02067119 B12-binding B12 binding domain (B12-BD). This doma 96.62
TIGR01501134 MthylAspMutase methylaspartate mutase, S subunit. 96.27
COG4999140 Uncharacterized domain of BarA-like signal transdu 95.62
COG2185143 Sbm Methylmalonyl-CoA mutase, C-terminal domain/su 95.53
TIGR03815 322 CpaE_hom_Actino helicase/secretion neighborhood Cp 95.13
cd02072128 Glm_B12_BD B12 binding domain of glutamate mutase 95.06
PRK15399 713 lysine decarboxylase LdcC; Provisional 94.97
PRK09426714 methylmalonyl-CoA mutase; Reviewed 94.9
cd02070201 corrinoid_protein_B12-BD B12 binding domain of cor 94.61
PRK15400 714 lysine decarboxylase CadA; Provisional 94.44
cd02069213 methionine_synthase_B12_BD B12 binding domain of m 94.35
PF02310121 B12-binding: B12 binding domain; InterPro: IPR0061 93.77
TIGR02370197 pyl_corrinoid methyltransferase cognate corrinoid 93.35
cd04728248 ThiG Thiazole synthase (ThiG) is the tetrameric en 92.51
PRK00208250 thiG thiazole synthase; Reviewed 90.99
cd02068127 radical_SAM_B12_BD B12 binding domain_like associa 90.61
PRK10558256 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro 88.87
PRK10128267 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional 88.82
TIGR03239249 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co 88.57
TIGR02311249 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 88.31
PRK00043212 thiE thiamine-phosphate pyrophosphorylase; Reviewe 88.19
COG0512191 PabA Anthranilate/para-aminobenzoate synthases com 87.18
PRK00278260 trpC indole-3-glycerol-phosphate synthase; Reviewe 87.09
PF02254116 TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg 86.04
PF01408120 GFO_IDH_MocA: Oxidoreductase family, NAD-binding R 85.78
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 84.84
cd02065125 B12-binding_like B12 binding domain (B12-BD). Most 84.47
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 84.23
PRK05749425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 82.58
TIGR02026 497 BchE magnesium-protoporphyrin IX monomethyl ester 82.45
PF1008797 DUF2325: Uncharacterized protein conserved in bact 82.44
PRK13566720 anthranilate synthase; Provisional 81.96
PRK12704 520 phosphodiesterase; Provisional 81.78
PRK11359799 cyclic-di-GMP phosphodiesterase; Provisional 81.73
PRK03958176 tRNA 2'-O-methylase; Reviewed 81.63
PRK15484380 lipopolysaccharide 1,2-N-acetylglucosaminetransfer 81.35
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 81.16
COG2200256 Rtn c-di-GMP phosphodiesterase class I (EAL domain 80.52
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
Probab=99.91  E-value=1.7e-23  Score=181.56  Aligned_cols=121  Identities=26%  Similarity=0.467  Sum_probs=113.1

Q ss_pred             cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247           49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG  128 (241)
Q Consensus        49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G  128 (241)
                      ++||||||++..+..+...|+..||+|.++.++.+|++.+                     ... ||+||+|++||++||
T Consensus         1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~---------------------~~~-~dlviLD~~lP~~dG   58 (229)
T COG0745           1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAA---------------------REQ-PDLVLLDLMLPDLDG   58 (229)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------hcC-CCEEEEECCCCCCCH
Confidence            4899999999999999999999999999999999999998                     556 999999999999999


Q ss_pred             HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247          129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR  191 (241)
Q Consensus       129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~  191 (241)
                      ++++++||......+|||++|+.++......++++||||||.|||++.+|...++.++++...
T Consensus        59 ~~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~  121 (229)
T COG0745          59 LELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG  121 (229)
T ss_pred             HHHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence            999999995455678999999999999999999999999999999999999999999987643

>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>COG4566 TtrR Response regulator [Signal transduction mechanisms] Back     alignment and domain information
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms] Back     alignment and domain information
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PLN03029 type-a response regulator protein; Provisional Back     alignment and domain information
>PRK10046 dpiA two-component response regulator DpiA; Provisional Back     alignment and domain information
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional Back     alignment and domain information
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional Back     alignment and domain information
>PRK09836 DNA-binding transcriptional activator CusR; Provisional Back     alignment and domain information
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK11173 two-component response regulator; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK09468 ompR osmolarity response regulator; Provisional Back     alignment and domain information
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional Back     alignment and domain information
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB Back     alignment and domain information
>PRK10161 transcriptional regulator PhoB; Provisional Back     alignment and domain information
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional Back     alignment and domain information
>PRK10840 transcriptional regulator RcsB; Provisional Back     alignment and domain information
>PRK11083 DNA-binding response regulator CreB; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional Back     alignment and domain information
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator Back     alignment and domain information
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional Back     alignment and domain information
>PRK11517 transcriptional regulatory protein YedW; Provisional Back     alignment and domain information
>CHL00148 orf27 Ycf27; Reviewed Back     alignment and domain information
>PRK09483 response regulator; Provisional Back     alignment and domain information
>TIGR01387 cztR_silR_copR heavy metal response regulator Back     alignment and domain information
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional Back     alignment and domain information
>PRK13856 two-component response regulator VirG; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>TIGR02875 spore_0_A sporulation transcription factor Spo0A Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PRK09935 transcriptional regulator FimZ; Provisional Back     alignment and domain information
>PRK14084 two-component response regulator; Provisional Back     alignment and domain information
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>PRK09581 pleD response regulator PleD; Reviewed Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional Back     alignment and domain information
>PRK15479 transcriptional regulatory protein TctD; Provisional Back     alignment and domain information
>PRK11697 putative two-component response-regulatory protein YehT; Provisional Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PRK09390 fixJ response regulator FixJ; Provisional Back     alignment and domain information
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional Back     alignment and domain information
>PRK13435 response regulator; Provisional Back     alignment and domain information
>PRK12555 chemotaxis-specific methylesterase; Provisional Back     alignment and domain information
>PRK09581 pleD response regulator PleD; Reviewed Back     alignment and domain information
>PRK10610 chemotaxis regulatory protein CheY; Provisional Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional Back     alignment and domain information
>PRK10403 transcriptional regulator NarP; Provisional Back     alignment and domain information
>PRK10651 transcriptional regulator NarL; Provisional Back     alignment and domain information
>PRK15369 two component system sensor kinase SsrB; Provisional Back     alignment and domain information
>PRK00742 chemotaxis-specific methylesterase; Provisional Back     alignment and domain information
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional Back     alignment and domain information
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>PRK09191 two-component response regulator; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers Back     alignment and domain information
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK10693 response regulator of RpoS; Provisional Back     alignment and domain information
>PRK15029 arginine decarboxylase; Provisional Back     alignment and domain information
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] Back     alignment and domain information
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e Back     alignment and domain information
>smart00448 REC cheY-homologous receiver domain Back     alignment and domain information
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain Back     alignment and domain information
>PRK02261 methylaspartate mutase subunit S; Provisional Back     alignment and domain information
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain Back     alignment and domain information
>cd02067 B12-binding B12 binding domain (B12-BD) Back     alignment and domain information
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit Back     alignment and domain information
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms] Back     alignment and domain information
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] Back     alignment and domain information
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein Back     alignment and domain information
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) Back     alignment and domain information
>PRK15399 lysine decarboxylase LdcC; Provisional Back     alignment and domain information
>PRK09426 methylmalonyl-CoA mutase; Reviewed Back     alignment and domain information
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins Back     alignment and domain information
>PRK15400 lysine decarboxylase CadA; Provisional Back     alignment and domain information
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase Back     alignment and domain information
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) Back     alignment and domain information
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family Back     alignment and domain information
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism Back     alignment and domain information
>PRK00208 thiG thiazole synthase; Reviewed Back     alignment and domain information
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain Back     alignment and domain information
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional Back     alignment and domain information
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional Back     alignment and domain information
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed Back     alignment and domain information
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed Back     alignment and domain information
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>cd02065 B12-binding_like B12 binding domain (B12-BD) Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase Back     alignment and domain information
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PRK13566 anthranilate synthase; Provisional Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional Back     alignment and domain information
>PRK03958 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
3m6m_D143 Crystal Structure Of Rpff Complexed With Rec Domain 1e-11
3dge_C122 Structure Of A Histidine Kinase-response Regulator 4e-08
3gt7_A154 Crystal Structure Of Signal Receiver Domain Of Sign 9e-08
3h1g_A129 Crystal Structure Of Chey Mutant T84a Of Helicobact 2e-07
3gwg_A129 Crystal Structure Of Chey Of Helicobacter Pylori Le 2e-07
3gl9_A122 The Structure Of A Histidine Kinase-Response Regula 3e-07
3nhz_A125 Structure Of N-Terminal Domain Of Mtra Length = 125 8e-07
3h1f_A129 Crystal Structure Of Chey Mutant D53a Of Helicobact 1e-06
3to5_A134 High Resolution Structure Of Chey3 From Vibrio Chol 2e-06
2ayz_A133 Solution Structure Of The E.Coli Rcsc C-Terminus (R 4e-06
2ayx_A254 Solution Structure Of The E.Coli Rcsc C-Terminus (R 5e-06
1yio_A208 Crystallographic Structure Of Response Regulator St 2e-05
2wb4_A 459 Activated Diguanylate Cyclase Pled In Complex With 4e-05
1w25_A 459 Response Regulator Pled In Complex With C-digmp Len 5e-05
1ymv_A129 Signal Transduction Protein Chey Mutant With Phe 14 1e-04
1zh2_A121 Crystal Structure Of The Calcium-Bound Receiver Dom 2e-04
1k66_A149 Crystal Structure Of The Cyanobacterial Phytochrome 2e-04
2che_A128 Structure Of The Mg2+-Bound Form Of Chey And Mechan 2e-04
2fka_A129 Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Che 2e-04
1zes_A125 Bef3- Activated Phob Receiver Domain Length = 125 2e-04
3f6p_A120 Crystal Structure Of Unphosphorelated Receiver Doma 2e-04
2zwm_A130 Crystal Structure Of Yycf Receiver Domain From Baci 2e-04
3t6k_A136 Crystal Structure Of A Hypothetical Response Regula 2e-04
1b00_A127 Phob Receiver Domain From Escherichia Coli Length = 3e-04
2chy_A128 Three-Dimensional Structure Of Chey, The Response R 4e-04
1ymu_A130 Signal Transduction Protein Chey Mutant With Met 17 4e-04
3heb_A152 Crystal Structure Of Response Regulator Receiver Do 4e-04
3jte_A143 Crystal Structure Of Response Regulator Receiver Do 5e-04
3olx_A129 Structural And Functional Effects Of Substitution A 6e-04
1d4z_A128 Crystal Structure Of Chey-95iv, A Hyperactive Chey 6e-04
1ys6_A233 Crystal Structure Of The Response Regulatory Protei 7e-04
1ab6_A125 Structure Of Chey Mutant F14n, V86t Length = 125 7e-04
3eq2_A 394 Structure Of Hexagonal Crystal Form Of Pseudomonas 7e-04
2oqr_A230 The Structure Of The Response Regulator Regx3 From 8e-04
1ab5_A125 Structure Of Chey Mutant F14n, V21t Length = 125 9e-04
3q9s_A249 Crystal Structure Of Rra(1-215) From Deinococcus Ra 9e-04
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 143 Back     alignment and structure 
Iteration: 1

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 24/129 (18%)
Query: 48  TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLST 107
           +  +L  DD   +R +L+ LL  + ++V CV+  ++ L+ +                   
Sbjct: 14  SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA------------------ 55
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKV---SSWKDVPVVVMSSENVPSRVTMCLEEG 164
              E   + ++ D  MPGM G D+LK+L+V   S  +  PVVV+S++  P  +  C + G
Sbjct: 56  ---EEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAG 112
Query: 165 AEEFLLKPV 173
           A  FL KPV
Sbjct: 113 ARAFLAKPV 121
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex Reveals Insights Into Two-component Signaling And A Novel Cis- Autophosphorylation Mechanism Length = 122 Back     alignment and structure
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal Transduction Histidine Kinase From Syntrophus Aciditrophicus Length = 154 Back     alignment and structure
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter Pylori Length = 129 Back     alignment and structure
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori Length = 129 Back     alignment and structure
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator Complex Sheds Light Into Two-Component Signaling And Reveals A Novel Cis Autophosphorylation Mechanism Length = 122 Back     alignment and structure
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra Length = 125 Back     alignment and structure
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter Pylori Length = 129 Back     alignment and structure
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae Length = 134 Back     alignment and structure
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 817-949) Containing Phosphoreceiver Domain Length = 133 Back     alignment and structure
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 700-949) Containing Linker Region And Phosphoreceiver Domain Length = 254 Back     alignment and structure
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From Pseudomonas Fluorescens Length = 208 Back     alignment and structure
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp Length = 459 Back     alignment and structure
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp Length = 459 Back     alignment and structure
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14 Replaced By Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By Gly Length = 129 Back     alignment and structure
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of Kdp Potassium Transport System Response Regulator Kdpe Length = 121 Back     alignment and structure
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome Response Regulator, Rcpb Length = 149 Back     alignment and structure
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of Phosphoryl Transfer In Bacterial Chemotaxis Length = 128 Back     alignment and structure
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In Complex With Chez(200-214) Solved From A F432 Crystal Grown In Caps (Ph 10.5) Length = 129 Back     alignment and structure
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain Length = 125 Back     alignment and structure
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of Yycf Length = 120 Back     alignment and structure
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus Subtilis Length = 130 Back     alignment and structure
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator (Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At 1.86 A Resolution Length = 136 Back     alignment and structure
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli Length = 127 Back     alignment and structure
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response Regulator Of Bacterial Chemotaxis Length = 128 Back     alignment and structure
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17 Replaced By Gly (M17g) Length = 130 Back     alignment and structure
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain From Rhodospirillum Rubrum Length = 152 Back     alignment and structure
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain Protein From Clostridium Thermocellum Length = 143 Back     alignment and structure
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At Position T+1 In Chey: Cheya88s-Bef3-Mn Complex Length = 129 Back     alignment and structure
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant Length = 128 Back     alignment and structure
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra From Mycobacterium Tuberculosis Length = 233 Back     alignment and structure
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t Length = 125 Back     alignment and structure
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas Aeruginosa Rssb Length = 394 Back     alignment and structure
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From Mycobacterium Tuberculosis Length = 230 Back     alignment and structure
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t Length = 125 Back     alignment and structure
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus Radiodurans Length = 249 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
3eq2_A 394 Probable two-component response regulator; adaptor 4e-23
3luf_A259 Two-component system response regulator/ggdef doma 7e-23
3luf_A259 Two-component system response regulator/ggdef doma 2e-17
3bre_A 358 Probable two-component response regulator; protein 1e-21
3hdv_A136 Response regulator; PSI-II, structural genomics, P 2e-21
1w25_A 459 Stalked-cell differentiation controlling protein; 6e-21
1w25_A 459 Stalked-cell differentiation controlling protein; 7e-17
1k66_A149 Phytochrome response regulator RCPB; CHEY homologu 6e-19
3heb_A152 Response regulator receiver domain protein (CHEY); 6e-19
2qvg_A143 Two component response regulator; NYSGXRC, PSI-2, 7e-19
1dc7_A124 NTRC, nitrogen regulation protein; receiver domain 1e-18
3jte_A143 Response regulator receiver protein; structural ge 2e-18
3cfy_A137 Putative LUXO repressor protein; structural genomi 8e-18
3i42_A127 Response regulator receiver domain protein (CHEY- 1e-17
1i3c_A149 Response regulator RCP1; phytochrome, signaling pr 1e-17
3ilh_A146 Two component response regulator; NYSGXRC, PSI-II, 1e-17
1ny5_A 387 Transcriptional regulator (NTRC family); AAA+ ATPa 1e-17
3dzd_A 368 Transcriptional regulator (NTRC family); sigma43 a 1e-17
1srr_A124 SPO0F, sporulation response regulatory protein; as 3e-17
1jbe_A128 Chemotaxis protein CHEY; signaling protein; 1.08A 3e-17
1qkk_A155 DCTD, C4-dicarboxylate transport transcriptional r 1e-16
2rjn_A154 Response regulator receiver:metal-dependent phosph 1e-16
2qxy_A142 Response regulator; regulation of transcription, N 2e-16
3hv2_A153 Response regulator/HD domain protein; PSI-2, NYSGX 3e-16
2ayx_A254 Sensor kinase protein RCSC; two independent struct 5e-16
1dbw_A126 Transcriptional regulatory protein FIXJ; doubly wo 1e-15
3hdg_A137 Uncharacterized protein; two-component sensor acti 2e-15
1p6q_A129 CHEY2; chemotaxis, signal transduction, response r 3e-15
1yio_A208 Response regulatory protein; transcription regulat 5e-15
3m6m_D143 Sensory/regulatory protein RPFC; RPFF, REC, enoyl- 9e-15
3h1g_A129 Chemotaxis protein CHEY homolog; sulfate-bound CHE 1e-14
3grc_A140 Sensor protein, kinase; protein structure initiati 4e-14
3rqi_A184 Response regulator protein; structural genomics, s 4e-14
2jk1_A139 HUPR, hydrogenase transcriptional regulatory prote 6e-14
3kcn_A151 Adenylate cyclase homolog; SGX, PSI 2, structural 7e-14
4dad_A146 Putative pilus assembly-related protein; response 1e-13
2qr3_A140 Two-component system response regulator; structura 2e-13
3snk_A135 Response regulator CHEY-like protein; P-loop conta 3e-13
1k68_A140 Phytochrome response regulator RCPA; phosphorylate 4e-13
3eod_A130 Protein HNR; response regulator, phosphoprotein, t 7e-13
2rdm_A132 Response regulator receiver protein; structural ge 1e-12
3kto_A136 Response regulator receiver protein; PSI-II,struct 2e-12
1mb3_A124 Cell division response regulator DIVK; signal tran 3e-12
3cnb_A143 DNA-binding response regulator, MERR family; signa 4e-12
1dcf_A136 ETR1 protein; beta-alpha five sandwich, transferas 4e-12
1tmy_A120 CHEY protein, TMY; chemotaxis, phosphoryl transfer 8e-12
3lua_A140 Response regulator receiver protein; two-component 9e-12
3gt7_A154 Sensor protein; structural genomics, signal receiv 1e-11
3crn_A132 Response regulator receiver domain protein, CHEY-; 1e-11
3cu5_A141 Two component transcriptional regulator, ARAC FAM; 2e-11
3eqz_A135 Response regulator; structural genomics, unknown f 3e-11
3h5i_A140 Response regulator/sensory box protein/ggdef domai 6e-11
3nhm_A133 Response regulator; protein structure initiative I 6e-11
3hzh_A157 Chemotaxis response regulator (CHEY-3); phosphatas 8e-11
2zay_A147 Response regulator receiver protein; structural ge 1e-10
3c3m_A138 Response regulator receiver protein; structural ge 2e-10
3r0j_A250 Possible two component system response transcript 3e-10
3lte_A132 Response regulator; structural genomics, PSI, prot 3e-10
3kyj_B145 CHEY6 protein, putative histidine protein kinase; 4e-10
1a2o_A 349 CHEB methylesterase; bacterial chemotaxis, adaptat 6e-10
3kht_A144 Response regulator; PSI-II, 11023K, structural gen 9e-10
2j48_A119 Two-component sensor kinase; pseudo-receiver, circ 1e-09
3t8y_A164 CHEB, chemotaxis response regulator protein-glutam 2e-09
3gl9_A122 Response regulator; beta-sheet, surrounded by alph 2e-09
1zh2_A121 KDP operon transcriptional regulatory protein KDPE 2e-09
3n53_A140 Response regulator receiver modulated diguanylate; 3e-09
3n0r_A286 Response regulator; sigma factor, receiver, two-co 3e-09
3cg0_A140 Response regulator receiver modulated diguanylate 6e-09
1zgz_A122 Torcad operon transcriptional regulatory protein; 6e-09
1s8n_A205 Putative antiterminator; RV1626, structural genomi 7e-09
1xhf_A123 DYE resistance, aerobic respiration control protei 1e-08
3cg4_A142 Response regulator receiver domain protein (CHEY-; 2e-08
3mm4_A206 Histidine kinase homolog; receiver domain, CKI1, c 2e-08
2qv0_A143 Protein MRKE; structural genomics, transcription, 5e-08
2pl1_A121 Transcriptional regulatory protein PHOP; CHEY-like 9e-08
2b4a_A138 BH3024; flavodoxin-like fold, structural genomics, 1e-07
3q9s_A249 DNA-binding response regulator; DNA binding protei 2e-07
2oqr_A230 Sensory transduction protein REGX3; response regul 3e-07
1ys7_A233 Transcriptional regulatory protein PRRA; response 3e-07
2qsj_A154 DNA-binding response regulator, LUXR family; struc 4e-07
2gwr_A238 DNA-binding response regulator MTRA; two-component 6e-07
3f6p_A120 Transcriptional regulatory protein YYCF; unphospho 7e-07
2r25_B133 Osmosensing histidine protein kinase SLN1; alpha5- 8e-07
2gkg_A127 Response regulator homolog; social motility, recei 9e-07
3klo_A225 Transcriptional regulator VPST; REC domain, HTH do 1e-06
3t6k_A136 Response regulator receiver; flavodoxin-like, stru 1e-06
2a9o_A120 Response regulator; essential protein, YYCF/YYCG h 2e-06
3a10_A116 Response regulator; phosphoacceptor, signaling pro 2e-06
2pln_A137 HP1043, response regulator; signaling protein; 1.8 3e-06
2hqr_A223 Putative transcriptional regulator; phosporylation 3e-06
2jba_A127 Phosphate regulon transcriptional regulatory PROT; 3e-06
2qzj_A136 Two-component response regulator; 11017X, PSI-II, 6e-06
1kgs_A225 DRRD, DNA binding response regulator D; DNA-bindin 2e-05
1mvo_A136 PHOP response regulator; phosphate regulon, transc 3e-05
3c97_A140 Signal transduction histidine kinase; structural g 4e-05
3sy8_A 400 ROCR; TIM barrel phosphodiesterase-A, transcriptio 5e-05
3b2n_A133 Uncharacterized protein Q99UF4; structural genomic 6e-05
1qo0_D196 AMIR; binding protein, gene regulator, receptor; 2 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1p2f_A220 Response regulator; DRRB, OMPR/PHOB, transcription 2e-04
3f6c_A134 Positive transcription regulator EVGA; structural 2e-04
1dz3_A130 Stage 0 sporulation protein A; response regulator, 3e-04
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Length = 394 Back     alignment and structure
 Score = 95.3 bits (237), Expect = 4e-23
 Identities = 31/154 (20%), Positives = 66/154 (42%), Gaps = 22/154 (14%)

Query: 45  QQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPST 104
            + +  +L +DD  + R+ L   L  S+++V    +G + L+                  
Sbjct: 2   HKVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIF---------------- 45

Query: 105 LSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEG 164
                E  + +L++ D  MP + G +L++R++ ++  + P++V+S   V S     L  G
Sbjct: 46  -----ESEQPDLVICDLRMPQIDGLELIRRIRQTAS-ETPIIVLSGAGVMSDAVEALRLG 99

Query: 165 AEEFLLKPVRLSDLEKLQPRLLKSPNRSCGNNED 198
           A ++L+KP+    + +   R           N+ 
Sbjct: 100 AADYLIKPLEDLAVLEHSVRRALDRAYLRVENQR 133
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 Back     alignment and structure
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 Back     alignment and structure
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A* Length = 358 Back     alignment and structure
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} Length = 136 Back     alignment and structure
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Length = 459 Back     alignment and structure
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Length = 459 Back     alignment and structure
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Length = 149 Back     alignment and structure
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} Length = 152 Back     alignment and structure
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} Length = 143 Back     alignment and structure
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Length = 124 Back     alignment and structure
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Length = 143 Back     alignment and structure
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Length = 137 Back     alignment and structure
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} Length = 127 Back     alignment and structure
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A Length = 149 Back     alignment and structure
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} Length = 146 Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Length = 387 Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Length = 368 Back     alignment and structure
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Length = 124 Back     alignment and structure
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ... Length = 128 Back     alignment and structure
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Length = 155 Back     alignment and structure
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} Length = 154 Back     alignment and structure
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Length = 142 Back     alignment and structure
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Length = 153 Back     alignment and structure
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 Back     alignment and structure
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Length = 126 Back     alignment and structure
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} Length = 137 Back     alignment and structure
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Length = 129 Back     alignment and structure
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Length = 208 Back     alignment and structure
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Length = 143 Back     alignment and structure
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A Length = 129 Back     alignment and structure
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Length = 140 Back     alignment and structure
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} Length = 184 Back     alignment and structure
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Length = 139 Back     alignment and structure
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Length = 151 Back     alignment and structure
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A Length = 146 Back     alignment and structure
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} Length = 140 Back     alignment and structure
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} Length = 135 Back     alignment and structure
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Length = 140 Back     alignment and structure
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Length = 130 Back     alignment and structure
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae} Length = 132 Back     alignment and structure
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} Length = 136 Back     alignment and structure
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Length = 124 Back     alignment and structure
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} Length = 143 Back     alignment and structure
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Length = 136 Back     alignment and structure
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Length = 120 Back     alignment and structure
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Length = 140 Back     alignment and structure
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Length = 154 Back     alignment and structure
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Length = 132 Back     alignment and structure
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Length = 141 Back     alignment and structure
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} Length = 135 Back     alignment and structure
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Length = 140 Back     alignment and structure
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Length = 133 Back     alignment and structure
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Length = 157 Back     alignment and structure
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} Length = 147 Back     alignment and structure
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Length = 138 Back     alignment and structure
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} Length = 250 Back     alignment and structure
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} Length = 132 Back     alignment and structure
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B* Length = 145 Back     alignment and structure
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1 Length = 349 Back     alignment and structure
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} Length = 144 Back     alignment and structure
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} Length = 119 Back     alignment and structure
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima} Length = 164 Back     alignment and structure
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C Length = 122 Back     alignment and structure
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Length = 121 Back     alignment and structure
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} Length = 140 Back     alignment and structure
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A Length = 286 Back     alignment and structure
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} Length = 140 Back     alignment and structure
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Length = 122 Back     alignment and structure
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A Length = 205 Back     alignment and structure
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Length = 123 Back     alignment and structure
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Length = 142 Back     alignment and structure
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Length = 206 Back     alignment and structure
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Length = 143 Back     alignment and structure
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Length = 121 Back     alignment and structure
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1 Length = 138 Back     alignment and structure
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans} Length = 249 Back     alignment and structure
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV} Length = 230 Back     alignment and structure
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Length = 233 Back     alignment and structure
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Length = 154 Back     alignment and structure
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A Length = 238 Back     alignment and structure
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A Length = 120 Back     alignment and structure
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Length = 133 Back     alignment and structure
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A Length = 127 Back     alignment and structure
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Length = 225 Back     alignment and structure
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} Length = 136 Back     alignment and structure
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Length = 120 Back     alignment and structure
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Length = 116 Back     alignment and structure
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Length = 137 Back     alignment and structure
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori} Length = 223 Back     alignment and structure
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Length = 127 Back     alignment and structure
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} Length = 136 Back     alignment and structure
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A* Length = 225 Back     alignment and structure
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Length = 136 Back     alignment and structure
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Length = 140 Back     alignment and structure
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa} Length = 400 Back     alignment and structure
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus} Length = 133 Back     alignment and structure
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Length = 196 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A* Length = 220 Back     alignment and structure
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} Length = 134 Back     alignment and structure
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* Length = 130 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
3to5_A134 CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p 99.96
3gl9_A122 Response regulator; beta-sheet, surrounded by alph 99.92
2lpm_A123 Two-component response regulator; transcription re 99.92
2r25_B133 Osmosensing histidine protein kinase SLN1; alpha5- 99.92
3t6k_A136 Response regulator receiver; flavodoxin-like, stru 99.91
3f6p_A120 Transcriptional regulatory protein YYCF; unphospho 99.91
3h1g_A129 Chemotaxis protein CHEY homolog; sulfate-bound CHE 99.91
3m6m_D143 Sensory/regulatory protein RPFC; RPFF, REC, enoyl- 99.9
1dbw_A126 Transcriptional regulatory protein FIXJ; doubly wo 99.9
3gt7_A154 Sensor protein; structural genomics, signal receiv 99.9
3rqi_A184 Response regulator protein; structural genomics, s 99.89
3eod_A130 Protein HNR; response regulator, phosphoprotein, t 99.89
2pl1_A121 Transcriptional regulatory protein PHOP; CHEY-like 99.89
3lua_A140 Response regulator receiver protein; two-component 99.89
1srr_A124 SPO0F, sporulation response regulatory protein; as 99.89
3hdv_A136 Response regulator; PSI-II, structural genomics, P 99.89
4e7p_A150 Response regulator; DNA binding, cytosol, transcri 99.89
3crn_A132 Response regulator receiver domain protein, CHEY-; 99.89
1mb3_A124 Cell division response regulator DIVK; signal tran 99.88
3kto_A136 Response regulator receiver protein; PSI-II,struct 99.88
1jbe_A128 Chemotaxis protein CHEY; signaling protein; 1.08A 99.88
1p6q_A129 CHEY2; chemotaxis, signal transduction, response r 99.88
1tmy_A120 CHEY protein, TMY; chemotaxis, phosphoryl transfer 99.88
3b2n_A133 Uncharacterized protein Q99UF4; structural genomic 99.88
1zgz_A122 Torcad operon transcriptional regulatory protein; 99.88
3f6c_A134 Positive transcription regulator EVGA; structural 99.88
3heb_A152 Response regulator receiver domain protein (CHEY); 99.88
1dz3_A130 Stage 0 sporulation protein A; response regulator, 99.88
1i3c_A149 Response regulator RCP1; phytochrome, signaling pr 99.88
3hv2_A153 Response regulator/HD domain protein; PSI-2, NYSGX 99.88
3i42_A127 Response regulator receiver domain protein (CHEY- 99.88
3mm4_A206 Histidine kinase homolog; receiver domain, CKI1, c 99.88
3r0j_A250 Possible two component system response transcript 99.88
1xhf_A123 DYE resistance, aerobic respiration control protei 99.88
3n0r_A286 Response regulator; sigma factor, receiver, two-co 99.88
2a9o_A120 Response regulator; essential protein, YYCF/YYCG h 99.88
3ilh_A146 Two component response regulator; NYSGXRC, PSI-II, 99.88
3snk_A135 Response regulator CHEY-like protein; P-loop conta 99.88
3jte_A143 Response regulator receiver protein; structural ge 99.88
4dad_A146 Putative pilus assembly-related protein; response 99.88
3grc_A140 Sensor protein, kinase; protein structure initiati 99.87
3kht_A144 Response regulator; PSI-II, 11023K, structural gen 99.87
3hdg_A137 Uncharacterized protein; two-component sensor acti 99.87
3luf_A259 Two-component system response regulator/ggdef doma 99.87
2qzj_A136 Two-component response regulator; 11017X, PSI-II, 99.87
3c3m_A138 Response regulator receiver protein; structural ge 99.87
3hzh_A157 Chemotaxis response regulator (CHEY-3); phosphatas 99.87
1k68_A140 Phytochrome response regulator RCPA; phosphorylate 99.87
3nhm_A133 Response regulator; protein structure initiative I 99.87
1mvo_A136 PHOP response regulator; phosphate regulon, transc 99.87
3cnb_A143 DNA-binding response regulator, MERR family; signa 99.87
1dcf_A136 ETR1 protein; beta-alpha five sandwich, transferas 99.87
3eul_A152 Possible nitrate/nitrite response transcriptional 99.87
2jba_A127 Phosphate regulon transcriptional regulatory PROT; 99.87
3cfy_A137 Putative LUXO repressor protein; structural genomi 99.87
2qxy_A142 Response regulator; regulation of transcription, N 99.87
2ayx_A254 Sensor kinase protein RCSC; two independent struct 99.87
3h5i_A140 Response regulator/sensory box protein/ggdef domai 99.87
3lte_A132 Response regulator; structural genomics, PSI, prot 99.87
1zh2_A121 KDP operon transcriptional regulatory protein KDPE 99.86
2zay_A147 Response regulator receiver protein; structural ge 99.86
1k66_A149 Phytochrome response regulator RCPB; CHEY homologu 99.86
1yio_A208 Response regulatory protein; transcription regulat 99.86
1a04_A215 Nitrate/nitrite response regulator protein NARL; s 99.86
2qr3_A140 Two-component system response regulator; structura 99.86
3a10_A116 Response regulator; phosphoacceptor, signaling pro 99.86
3q9s_A249 DNA-binding response regulator; DNA binding protei 99.86
3cg0_A140 Response regulator receiver modulated diguanylate 99.86
2rjn_A154 Response regulator receiver:metal-dependent phosph 99.85
3cz5_A153 Two-component response regulator, LUXR family; str 99.85
3dzd_A 368 Transcriptional regulator (NTRC family); sigma43 a 99.85
3kcn_A151 Adenylate cyclase homolog; SGX, PSI 2, structural 99.85
1qkk_A155 DCTD, C4-dicarboxylate transport transcriptional r 99.85
3cg4_A142 Response regulator receiver domain protein (CHEY-; 99.85
3cu5_A141 Two component transcriptional regulator, ARAC FAM; 99.85
3eqz_A135 Response regulator; structural genomics, unknown f 99.85
1kgs_A225 DRRD, DNA binding response regulator D; DNA-bindin 99.85
3n53_A140 Response regulator receiver modulated diguanylate; 99.85
3eq2_A 394 Probable two-component response regulator; adaptor 99.84
2gkg_A127 Response regulator homolog; social motility, recei 99.84
1s8n_A205 Putative antiterminator; RV1626, structural genomi 99.84
2qvg_A143 Two component response regulator; NYSGXRC, PSI-2, 99.84
2qsj_A154 DNA-binding response regulator, LUXR family; struc 99.84
2jk1_A139 HUPR, hydrogenase transcriptional regulatory prote 99.84
1ys7_A233 Transcriptional regulatory protein PRRA; response 99.83
1w25_A 459 Stalked-cell differentiation controlling protein; 99.83
2pln_A137 HP1043, response regulator; signaling protein; 1.8 99.83
2oqr_A230 Sensory transduction protein REGX3; response regul 99.83
1ny5_A 387 Transcriptional regulator (NTRC family); AAA+ ATPa 99.83
3kyj_B145 CHEY6 protein, putative histidine protein kinase; 99.83
2rdm_A132 Response regulator receiver protein; structural ge 99.83
2gwr_A238 DNA-binding response regulator MTRA; two-component 99.82
2qv0_A143 Protein MRKE; structural genomics, transcription, 99.82
3c97_A140 Signal transduction histidine kinase; structural g 99.82
2j48_A119 Two-component sensor kinase; pseudo-receiver, circ 99.82
3klo_A225 Transcriptional regulator VPST; REC domain, HTH do 99.82
3t8y_A164 CHEB, chemotaxis response regulator protein-glutam 99.82
3c3w_A225 Two component transcriptional regulatory protein; 99.81
3bre_A 358 Probable two-component response regulator; protein 99.81
2b4a_A138 BH3024; flavodoxin-like fold, structural genomics, 99.8
1dc7_A124 NTRC, nitrogen regulation protein; receiver domain 99.8
1p2f_A220 Response regulator; DRRB, OMPR/PHOB, transcription 99.8
2hqr_A223 Putative transcriptional regulator; phosporylation 99.8
3sy8_A 400 ROCR; TIM barrel phosphodiesterase-A, transcriptio 99.79
1qo0_D196 AMIR; binding protein, gene regulator, receptor; 2 99.78
1a2o_A 349 CHEB methylesterase; bacterial chemotaxis, adaptat 99.74
3luf_A259 Two-component system response regulator/ggdef doma 99.73
2vyc_A 755 Biodegradative arginine decarboxylase; pyridoxal p 99.68
1w25_A 459 Stalked-cell differentiation controlling protein; 99.25
3cwo_X237 Beta/alpha-barrel protein based on 1THF and 1TMY; 99.22
2ayx_A254 Sensor kinase protein RCSC; two independent struct 97.83
3n75_A 715 LDC, lysine decarboxylase, inducible; pyridoxal-5' 97.38
3q7r_A121 Transcriptional regulatory protein; CHXR, receiver 97.13
2yxb_A161 Coenzyme B12-dependent mutase; alpha/beta, structu 97.09
3cwo_X237 Beta/alpha-barrel protein based on 1THF and 1TMY; 96.48
1ccw_A137 Protein (glutamate mutase); coenzyme B12, radical 96.04
1wv2_A265 Thiazole moeity, thiazole biosynthesis protein THI 93.91
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 92.79
2xij_A762 Methylmalonyl-COA mutase, mitochondrial; isomerase 92.58
1y80_A210 Predicted cobalamin binding protein; corrinoid, fa 92.41
1req_A727 Methylmalonyl-COA mutase; isomerase, intramolecula 92.29
3ezx_A215 MMCP 1, monomethylamine corrinoid protein 1; N ter 92.22
2i2x_B258 MTAC, methyltransferase 1; TIM barrel and helix bu 91.93
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 91.49
3fkq_A 373 NTRC-like two-domain protein; RER070207001320, str 89.65
3kp1_A763 D-ornithine aminomutase E component; 5 aminomutase 89.34
3qja_A272 IGPS, indole-3-glycerol phosphate synthase; struct 89.16
1xrs_B262 D-lysine 5,6-aminomutase beta subunit; TIM barrel, 88.52
2htm_A268 Thiazole biosynthesis protein THIG; thiamin biosyn 87.8
3tsm_A272 IGPS, indole-3-glycerol phosphate synthase; struct 86.52
3o63_A243 Probable thiamine-phosphate pyrophosphorylase; thi 86.37
2ekc_A262 AQ_1548, tryptophan synthase alpha chain; structur 84.94
2bfw_A200 GLGA glycogen synthase; glycosyltransferase family 84.91
1geq_A248 Tryptophan synthase alpha-subunit; hyperthermophIl 83.17
2v5j_A287 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l 81.09
1qop_A268 Tryptophan synthase alpha chain; lyase, carbon-oxy 81.07
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae} Back     alignment and structure
Probab=99.96  E-value=4.7e-29  Score=198.39  Aligned_cols=120  Identities=28%  Similarity=0.555  Sum_probs=112.0

Q ss_pred             CccEEEEEeCCHHHHHHHHHHHhhcCcE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247           47 ETFHVLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG  125 (241)
Q Consensus        47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~  125 (241)
                      .++|||||||++.+|..++.+|+..||. |.++.+|.+|++.+                     ....||+||+|+.||+
T Consensus        11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~---------------------~~~~~DlillD~~MP~   69 (134)
T 3to5_A           11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPML---------------------KKGDFDFVVTDWNMPG   69 (134)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHH---------------------HHHCCSEEEEESCCSS
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHH---------------------HhCCCCEEEEcCCCCC
Confidence            4679999999999999999999999996 67899999999998                     5568999999999999


Q ss_pred             CCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247          126 MTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK  187 (241)
Q Consensus       126 ~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~  187 (241)
                      |||++++++||.. ..+++|||++|++.+.+...+++++||++||.|||+.++|...+.++++
T Consensus        70 mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~  132 (134)
T 3to5_A           70 MQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE  132 (134)
T ss_dssp             SCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence            9999999999965 4578999999999999999999999999999999999999999999875
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C Back     alignment and structure
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti} Back     alignment and structure
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Back     alignment and structure
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0 Back     alignment and structure
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A Back     alignment and structure
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A Back     alignment and structure
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Back     alignment and structure
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Back     alignment and structure
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Back     alignment and structure
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} Back     alignment and structure
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Back     alignment and structure
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Back     alignment and structure
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Back     alignment and structure
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Back     alignment and structure
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0 Back     alignment and structure
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A Back     alignment and structure
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Back     alignment and structure
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Back     alignment and structure
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0 Back     alignment and structure
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ... Back     alignment and structure
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Back     alignment and structure
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Back     alignment and structure
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus} Back     alignment and structure
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Back     alignment and structure
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} Back     alignment and structure
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0 Back     alignment and structure
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* Back     alignment and structure
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A Back     alignment and structure
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Back     alignment and structure
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0 Back     alignment and structure
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Back     alignment and structure
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Back     alignment and structure
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A Back     alignment and structure
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Back     alignment and structure
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} Back     alignment and structure
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} Back     alignment and structure
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Back     alignment and structure
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A Back     alignment and structure
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Back     alignment and structure
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 Back     alignment and structure
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0 Back     alignment and structure
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Back     alignment and structure
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} Back     alignment and structure
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Back     alignment and structure
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Back     alignment and structure
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Back     alignment and structure
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Back     alignment and structure
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Back     alignment and structure
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} Back     alignment and structure
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Back     alignment and structure
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Back     alignment and structure
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Back     alignment and structure
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Back     alignment and structure
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Back     alignment and structure
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} Back     alignment and structure
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Back     alignment and structure
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} Back     alignment and structure
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Back     alignment and structure
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Back     alignment and structure
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A Back     alignment and structure
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} Back     alignment and structure
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Back     alignment and structure
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} Back     alignment and structure
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Back     alignment and structure
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Back     alignment and structure
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Back     alignment and structure
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Back     alignment and structure
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0 Back     alignment and structure
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A* Back     alignment and structure
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0 Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A Back     alignment and structure
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A Back     alignment and structure
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} Back     alignment and structure
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Back     alignment and structure
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Back     alignment and structure
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Back     alignment and structure
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Back     alignment and structure
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV} Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B* Back     alignment and structure
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae} Back     alignment and structure
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A Back     alignment and structure
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Back     alignment and structure
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Back     alignment and structure
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} Back     alignment and structure
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Back     alignment and structure
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima} Back     alignment and structure
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A* Back     alignment and structure
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1 Back     alignment and structure
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Back     alignment and structure
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A* Back     alignment and structure
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori} Back     alignment and structure
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Back     alignment and structure
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1 Back     alignment and structure
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Back     alignment and structure
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Back     alignment and structure
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Back     alignment and structure
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A Back     alignment and structure
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Back     alignment and structure
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* Back     alignment and structure
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A Back     alignment and structure
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} Back     alignment and structure
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A Back     alignment and structure
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Back     alignment and structure
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A Back     alignment and structure
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica} Back     alignment and structure
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A* Back     alignment and structure
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri} Back     alignment and structure
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} Back     alignment and structure
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* Back     alignment and structure
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* Back     alignment and structure
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1 Back     alignment and structure
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} Back     alignment and structure
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 Back     alignment and structure
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} Back     alignment and structure
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} Back     alignment and structure
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Back     alignment and structure
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A Back     alignment and structure
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A Back     alignment and structure
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 241
d1dz3a_123 c.23.1.1 (A:) Sporulation response regulator Spo0A 2e-18
d1dcfa_134 c.23.1.2 (A:) Receiver domain of the ethylene rece 2e-18
d1zesa1121 c.23.1.1 (A:3-123) PhoB receiver domain {Escherich 3e-18
d2r25b1128 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Ba 6e-18
d1peya_119 c.23.1.1 (A:) Sporulation response regulator Spo0F 8e-18
d1a04a2138 c.23.1.1 (A:5-142) Nitrate/nitrite response regula 2e-16
d1mb3a_123 c.23.1.1 (A:) Cell division response regulator Div 2e-16
d1jbea_128 c.23.1.1 (A:) CheY protein {Escherichia coli [TaxI 3e-16
d1u0sy_118 c.23.1.1 (Y:) CheY protein {Thermotoga maritima [T 6e-16
d1k68a_140 c.23.1.1 (A:) Response regulator for cyanobacteria 7e-16
d2a9pa1117 c.23.1.1 (A:2-118) DNA-binding response regulator 1e-15
d1k66a_149 c.23.1.1 (A:) Response regulator for cyanobacteria 1e-15
d1krwa_123 c.23.1.1 (A:) NTRC receiver domain {Salmonella typ 2e-15
d1i3ca_144 c.23.1.1 (A:) Response regulator for cyanobacteria 3e-15
d1xhfa1121 c.23.1.1 (A:2-122) Aerobic respiration control pro 4e-15
d2b4aa1118 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Ba 2e-14
d1a2oa1140 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal 2e-14
d1zgza1120 c.23.1.1 (A:2-121) TorCAD operon transcriptional r 4e-14
d1p6qa_129 c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti 5e-14
d1dbwa_123 c.23.1.1 (A:) Transcriptional regulatory protein F 8e-14
d1yioa2128 c.23.1.1 (A:3-130) Response regulatory protein Sty 4e-13
d2ayxa1133 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C 4e-13
d1qkka_140 c.23.1.1 (A:) Transcriptional regulatory protein D 6e-13
d1zh2a1119 c.23.1.1 (A:2-120) Transcriptional regulatory prot 1e-12
d1ys7a2121 c.23.1.1 (A:7-127) Transcriptional regulatory prot 2e-12
d1mvoa_121 c.23.1.1 (A:) PhoP receiver domain {Bacillus subti 3e-12
d1kgsa2122 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotog 2e-11
d2pl1a1119 c.23.1.1 (A:1-119) PhoP receiver domain {Escherich 2e-11
d1s8na_190 c.23.1.1 (A:) Probable two-component system transc 2e-11
d1ny5a1137 c.23.1.1 (A:1-137) Transcriptional activator sigm5 5e-10
d1p2fa2120 c.23.1.1 (A:1-120) Response regulator DrrB {Thermo 7e-10
d1w25a1139 c.23.1.1 (A:2-140) Response regulator PleD, receiv 1e-09
d1w25a2153 c.23.1.1 (A:141-293) Response regulator PleD, rece 5e-09
d1qo0d_189 c.23.1.3 (D:) Positive regulator of the amidase op 7e-09
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Length = 123 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 76.0 bits (187), Expect = 2e-18
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 23/133 (17%)

Query: 48  TFHVLAVDDSLIDRKILENLLRVSS--YQVTCVDSGDKALEYLGLIDNLENNSNASPSTL 105
           +  V   DD+     +L+  +        +    +G   L+ L                 
Sbjct: 1   SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQML----------------- 43

Query: 106 STKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGA 165
               EE R ++++ D  MP + G  +L+R++        V+++++          +E GA
Sbjct: 44  ----EEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGA 99

Query: 166 EEFLLKPVRLSDL 178
             F+LKP  + +L
Sbjct: 100 SYFILKPFDMENL 112
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 134 Back     information, alignment and structure
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} Length = 121 Back     information, alignment and structure
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 128 Back     information, alignment and structure
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} Length = 119 Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Length = 138 Back     information, alignment and structure
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} Length = 123 Back     information, alignment and structure
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} Length = 118 Back     information, alignment and structure
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} Length = 140 Back     information, alignment and structure
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 117 Back     information, alignment and structure
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} Length = 149 Back     information, alignment and structure
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} Length = 123 Back     information, alignment and structure
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} Length = 144 Back     information, alignment and structure
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 121 Back     information, alignment and structure
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} Length = 118 Back     information, alignment and structure
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 140 Back     information, alignment and structure
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 120 Back     information, alignment and structure
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Length = 129 Back     information, alignment and structure
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} Length = 123 Back     information, alignment and structure
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Length = 128 Back     information, alignment and structure
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 133 Back     information, alignment and structure
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} Length = 140 Back     information, alignment and structure
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 119 Back     information, alignment and structure
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 121 Back     information, alignment and structure
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} Length = 121 Back     information, alignment and structure
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Length = 122 Back     information, alignment and structure
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} Length = 119 Back     information, alignment and structure
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 190 Back     information, alignment and structure
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 137 Back     information, alignment and structure
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} Length = 120 Back     information, alignment and structure
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 139 Back     information, alignment and structure
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 153 Back     information, alignment and structure
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Length = 189 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
d2pl1a1119 PhoP receiver domain {Escherichia coli [TaxId: 562 99.96
d1dbwa_123 Transcriptional regulatory protein FixJ, receiver 99.96
d1zesa1121 PhoB receiver domain {Escherichia coli [TaxId: 562 99.96
d1peya_119 Sporulation response regulator Spo0F {Bacillus sub 99.96
d1kgsa2122 PhoB receiver domain {Thermotoga maritima [TaxId: 99.96
d1ys7a2121 Transcriptional regulatory protein PrrA, N-termina 99.95
d2r25b1128 Response regulator Sin1 {Baker's yeast (Saccharomy 99.95
d1mb3a_123 Cell division response regulator DivK {Caulobacter 99.95
d2a9pa1117 DNA-binding response regulator MicA, N-terminal do 99.95
d1mvoa_121 PhoP receiver domain {Bacillus subtilis [TaxId: 14 99.95
d1qkka_140 Transcriptional regulatory protein DctD, receiver 99.95
d1ny5a1137 Transcriptional activator sigm54 (NtrC1), N-termin 99.95
d1p6qa_129 CheY protein {Sinorhizobium meliloti, CheY2 [TaxId 99.95
d1xhfa1121 Aerobic respiration control protein ArcA, N-termin 99.95
d1krwa_123 NTRC receiver domain {Salmonella typhimurium [TaxI 99.95
d1zh2a1119 Transcriptional regulatory protein KdpE, N-termina 99.95
d1jbea_128 CheY protein {Escherichia coli [TaxId: 562]} 99.95
d2ayxa1133 Sensor kinase protein RcsC, C-terminal domain {Esc 99.95
d1u0sy_118 CheY protein {Thermotoga maritima [TaxId: 2336]} 99.95
d1dcfa_134 Receiver domain of the ethylene receptor {Thale cr 99.95
d1zgza1120 TorCAD operon transcriptional regulator TorD, N-te 99.94
d1dz3a_123 Sporulation response regulator Spo0A {Bacillus ste 99.94
d1yioa2128 Response regulatory protein StyR, N-terminal domai 99.94
d1w25a1139 Response regulator PleD, receiver domain {Caulobac 99.94
d1a04a2138 Nitrate/nitrite response regulator (NarL), receive 99.94
d1p2fa2120 Response regulator DrrB {Thermotoga maritima [TaxI 99.94
d1s8na_190 Probable two-component system transcriptional regu 99.94
d1i3ca_144 Response regulator for cyanobacterial phytochrome 99.94
d1k68a_140 Response regulator for cyanobacterial phytochrome 99.94
d1k66a_149 Response regulator for cyanobacterial phytochrome 99.94
d1w25a2153 Response regulator PleD, receiver domain {Caulobac 99.93
d2b4aa1118 Hypothetical protein BH3024 {Bacillus halodurans [ 99.91
d1a2oa1140 Methylesterase CheB, N-terminal domain {Salmonella 99.9
d1qo0d_189 Positive regulator of the amidase operon AmiR {Pse 99.88
d1ccwa_137 Glutamate mutase, small subunit {Clostridium cochl 96.76
d7reqa2168 Methylmalonyl-CoA mutase alpha subunit, C-terminal 96.0
d1xrsb1160 D-lysine 5,6-aminomutase beta subunit KamE, C-term 94.08
d1dxea_253 2-dehydro-3-deoxy-galactarate aldolase {Escherichi 91.47
d3bula2156 Methionine synthase, C-terminal domain {Escherichi 90.49
d1r8ja2135 N-terminal domain of the circadian clock protein K 81.6
d7reqb2163 Methylmalonyl-CoA mutase beta subunit, C-terminal 81.57
d1izca_ 299 Macrophomate synthase {Macrophoma commelinae [TaxI 80.78
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=8.1e-29  Score=190.96  Aligned_cols=117  Identities=21%  Similarity=0.388  Sum_probs=111.3

Q ss_pred             cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247           49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG  128 (241)
Q Consensus        49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G  128 (241)
                      +|||||||++.++..++.+|+..||+|.++.+|.+|++++                     ....||+||+|+.||+++|
T Consensus         1 mrILvVDDd~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l---------------------~~~~~dliilD~~mP~~~G   59 (119)
T d2pl1a1           1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYL---------------------NEHIPDIAIVDLGLPDEDG   59 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHSCCSEEEECSCCSSSCH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------HhcccceeehhccCCCchh
Confidence            5899999999999999999999999999999999999999                     5678999999999999999


Q ss_pred             HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247          129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK  187 (241)
Q Consensus       129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~  187 (241)
                      +++++++|.. .+.+|||++|++.+.+...+++++||+|||.|||+.++|...++++++
T Consensus        60 ~e~~~~i~~~-~~~~pvi~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~lr  117 (119)
T d2pl1a1          60 LSLIRRWRSN-DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR  117 (119)
T ss_dssp             HHHHHHHHHT-TCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CcccceEeeeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHc
Confidence            9999999964 478999999999999999999999999999999999999999999885
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} Back     information, alignment and structure
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} Back     information, alignment and structure
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Back     information, alignment and structure
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} Back     information, alignment and structure
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} Back     information, alignment and structure
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} Back     information, alignment and structure
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} Back     information, alignment and structure
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]} Back     information, alignment and structure
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian clock protein KaiA {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} Back     information, alignment and structure