Citrus Sinensis ID: 026381

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAIEDLIPSAT
Secondary Structure (PSIPRED)
cEEEEccccccHHHHHHHHHHHHcccEEEEccccHHHHHcccccHHHHHHHHHHHccccccccEEEEcccHHHHHHHcccccccccccHHHHHHHHHcccccEEEEEcccccccHHHHcccccccccccccEEEEEccccHHHHHHHHHccccEEEccccccccccccccHHHHHHHcccccccEEEEcccccccccEEEEccccccEEEccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccHHHHHHHHHHHHcccEEEEccccEEEEccccccHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHcccHHHccccHHHHHHHHHcccccEEEEEccccccccHHccccccccccccccEEEEEccccHHHHHHHHHccccEEcccccccccccccccHHHHHHHccccEEEEEEEcccccccEEEEEEccccccEEEEcccccHHHHHHHHcccccccHHHHcccc
Coil and Loop (DISEMBL)
myveadpsgadswklEPVVELLKEgavgvvptDTLYAIVCDLKSHSAIERLRRiknvepskplSILCRSLrdidtyttgfprgdgqgHANIFRAVkhclpgpytfiltaskevpkkcvrygtttakyslrkhvgvripnDAICQAILQKMDAPLISTSVkwlkdnewmvdpvviadtygpegldfvvdggvrvaepstvvdmtgtypkiirqgkgpklywmeeedansTAIEDLIPSAT
Flexible Loop (DISEMBL)
myveadpsgadswkLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERlrriknvepskplsILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFIltaskevpkkCVRYGTTtakyslrkhvgvrIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAepstvvdmtgtypkiirqgkgpklyWMEEEdanstaiedlipsat
Low Complexity Region (SEG)
MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAIEDLIPSAT
Disordered region (IsUnstruct)
************WKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWM******************
Disordered Region (DISOPRED)
MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANST**********
Disordered Region (DISEMBL)
**********DSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAIEDLIPSAT
Disordered Region (DISPRO)
MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAIEDLI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAIEDLIPSAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
P0AFR6	206	Uncharacterized protein Y	yes	no	0.799	0.927	0.314	1e-25
P0AFR4	206	Uncharacterized protein Y	N/A	no	0.799	0.927	0.314	1e-25
P0AFR5	206	Uncharacterized protein Y	yes	no	0.799	0.927	0.314	1e-25
P45103	207	Uncharacterized protein H	yes	no	0.803	0.927	0.309	6e-23
Q0VTD8	182	tRNA threonylcarbamoylade	no	no	0.686	0.901	0.271	5e-09
Q0VC80	276	YrdC domain-containing pr	yes	no	0.518	0.449	0.298	7e-09
Q499R4	280	YrdC domain-containing pr	yes	no	0.778	0.664	0.288	2e-08
A6WHB6	188	tRNA threonylcarbamoylade	no	no	0.761	0.968	0.253	3e-08
A3CYL0	188	tRNA threonylcarbamoylade	no	no	0.761	0.968	0.253	3e-08
A1RDY7	188	tRNA threonylcarbamoylade	no	no	0.744	0.946	0.251	5e-08

>sp|P0AFR6|YCIO_SHIFL Uncharacterized protein YciO OS=Shigella flexneri GN=yciO PE=3 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 19/210 (9%)

Query: 7   PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
           P       +   VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ +      +++
Sbjct: 9   PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLM 68

Query: 67  CRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTA 125
           CR L ++ TY+            N+ FR +K+  PG YTFIL  +KEVP++ ++      
Sbjct: 69  CRDLSELSTYSF---------VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQ------ 113

Query: 126 KYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDF 185
               RK +G+R+P++ I QA+L+ +  P++STS+          DP  I D    + +D 
Sbjct: 114 --EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQ-VDL 170

Query: 186 VVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 215
           ++ GG    +P+TV+D+T   P ++R+G G
Sbjct: 171 IIHGGYLGQKPTTVIDLTDDTPVVVREGVG 200

Shigella flexneri (taxid: 623)

>sp|P0AFR4|YCIO_ECOLI Uncharacterized protein YciO OS=Escherichia coli (strain K12) GN=yciO PE=1 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 19/210 (9%)

Query: 7   PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
           P       +   VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ +      +++
Sbjct: 9   PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLM 68

Query: 67  CRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTA 125
           CR L ++ TY+            N+ FR +K+  PG YTFIL  +KEVP++ ++      
Sbjct: 69  CRDLSELSTYSF---------VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQ------ 113

Query: 126 KYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDF 185
               RK +G+R+P++ I QA+L+ +  P++STS+          DP  I D    + +D 
Sbjct: 114 --EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQ-VDL 170

Query: 186 VVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 215
           ++ GG    +P+TV+D+T   P ++R+G G
Sbjct: 171 IIHGGYLGQKPTTVIDLTDDTPVVVREGVG 200

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AFR5|YCIO_ECOL6 Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yciO PE=3 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 19/210 (9%)

Query: 7   PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
           P       +   VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ +      +++
Sbjct: 9   PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLM 68

Query: 67  CRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTA 125
           CR L ++ TY+            N+ FR +K+  PG YTFIL  +KEVP++ ++      
Sbjct: 69  CRDLSELSTYSF---------VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQ------ 113

Query: 126 KYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDF 185
               RK +G+R+P++ I QA+L+ +  P++STS+          DP  I D    + +D 
Sbjct: 114 --EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQ-VDL 170

Query: 186 VVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 215
           ++ GG    +P+TV+D+T   P ++R+G G
Sbjct: 171 IIHGGYLGQKPTTVIDLTDDTPVVVREGVG 200

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|P45103|Y1198_HAEIN Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1198 PE=3 SV=1

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 115/210 (54%), Gaps = 18/210 (8%)

Query: 7   PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
           P    +  +   VE+L++G V V PTD+ YA+ C +    A++R+  I+ +      +++
Sbjct: 9   PENPQARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLV 68

Query: 67  CRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAK 126
           C  L ++ TY         + +   +R +K+  PG YTFILTA+KE+P++ +     T+K
Sbjct: 69  CSDLSELSTY--------ARVNNTAYRLIKNNTPGRYTFILTATKELPRRLM-----TSK 115

Query: 127 YSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKW-LKDNEWMVDPVVIADTYGPEGLDF 185
              RK +G+R+P++ I   +L  +  P++S S+    +++    DP  I D    + +D 
Sbjct: 116 ---RKTIGLRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQ-VDL 171

Query: 186 VVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 215
           ++ GG    EP+TVVD+T   P I+R+G G
Sbjct: 172 IIHGGYLGQEPTTVVDLTEESPVILREGSG 201

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|Q0VTD8|RIMN_ALCBS tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rimN PE=3 SV=1

 Score = 61.2 bits (147), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 20/184 (10%)

Query: 20  ELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTG 79
           ++++EG V   PT+++Y + CD  + +A+ +L  IK+   SK L ++  SL  +  Y   
Sbjct: 10  QIIQEGGVVAYPTESVYGLGCDPFNRNAVMQLLAIKHRPVSKGLILIGESLAQLAPYLHL 69

Query: 80  FPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPN 139
             +   Q        ++   P P T+++ AS  +P   VR           + V VR+P+
Sbjct: 70  NEQQSAQ--------LEKKWPAPITYLVDASDRLP-AWVR--------GEHRKVAVRVPD 112

Query: 140 DAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPST 198
             + + + Q    P+ISTS   +       +   +A   G + LDF+V G   R A+PST
Sbjct: 113 HPLARQLCQLAGQPIISTSAN-ISGRPAARNRYQVARQLGNQ-LDFIVSGACDRAAKPST 170

Query: 199 VVDM 202
           ++D+
Sbjct: 171 IIDL 174

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) (taxid: 393595)

>sp|Q0VC80|YRDC_BOVIN YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC PE=2 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 20/144 (13%)

Query: 15  LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
           L   V  L+ GAV  VPTDTLY + C      A+  + R+K    +KPL++    + D+ 
Sbjct: 68  LRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVY 127

Query: 75  TYTTGFPRGDGQGHANIFRA-VKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHV 133
            Y           H  +    +K  LPGP T ++  S+E+ K    +            V
Sbjct: 128 RYC----------HVRVPEGLLKDLLPGPVTLVMERSEELNKDLNPF---------TPLV 168

Query: 134 GVRIPNDAICQAILQKMDAPLIST 157
           G+RIP+ A  Q + Q    PL  T
Sbjct: 169 GIRIPDHAFMQDLAQMFGGPLALT 192

May regulate the activity of some transporters.

Bos taurus (taxid: 9913)

>sp|Q499R4|YRDC_RAT YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 93/225 (41%), Gaps = 39/225 (17%)

Query: 3   VEADPSGADSW--KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
           VEA       W   L   V  L+ GAV  VPTDTLY + C     +A+  + R+K    +
Sbjct: 57  VEAASPERSGWTEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEA 116

Query: 61  KPLSILCRSLRDIDTYT-TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVR 119
           KPL++    + D+  Y     PR            ++   PGP T ++  S+E+ K    
Sbjct: 117 KPLAVCLGRVADVYRYCQVRVPR----------ELLEDLFPGPVTLVMERSEELNKDLNP 166

Query: 120 YGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYG 179
           +            VG+RIP+ A    + Q    PL  TS   L      +      D + 
Sbjct: 167 F---------TPLVGIRIPDHAFMLDLAQMFGGPLALTSAN-LSSQASSLSVEEFQDLW- 215

Query: 180 PEGLDFVVDGG---------VRVAEPSTVVDMT--GTYPKIIRQG 213
           P  L  V+DGG          R+   STVVD++  G +  IIR G
Sbjct: 216 PH-LSLVIDGGPIGDSESPECRLG--STVVDLSVPGKF-GIIRSG 256

May regulate the activity of some transporters.

Rattus norvegicus (taxid: 10116)

>sp|A6WHB6|RIMN_SHEB8 tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Shewanella baltica (strain OS185) GN=rimN PE=3 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 23/205 (11%)

Query: 14  KLEP--VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLR 71
           +L P  + +++ +G V   PT+ +Y + CD  + +AI++L  +K     K L ++    +
Sbjct: 3   QLHPSDIKDIILQGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQ 62

Query: 72  DIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLR 130
            +  Y       + Q  A          PGP+TF++     V K  C  + +   + S  
Sbjct: 63  QLLAYVD-----ESQLTAEQLEFAFSKWPGPFTFVMPIKAHVSKYLCGEFDSIAVRVS-- 115

Query: 131 KHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG 190
            H GV+    A+C+A    ++ PL+STS     ++  +    ++AD  G   +D +V G 
Sbjct: 116 AHAGVQ----ALCRA----LNKPLVSTSANLAGEDPALTAAEILADFTGK--IDALVLGE 165

Query: 191 V-RVAEPSTVVDMTGTYPKIIRQGK 214
           +    +PST++D      KI+R G+
Sbjct: 166 LGEQRQPSTIIDARSG--KILRNGQ 188

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Shewanella baltica (strain OS185) (taxid: 402882)

>sp|A3CYL0|RIMN_SHEB5 tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rimN PE=3 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 23/205 (11%)

Query: 14  KLEP--VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLR 71
           +L P  + +++ +G V   PT+ +Y + CD  + +AI++L  +K     K L ++    +
Sbjct: 3   QLHPSDIKDIILQGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQ 62

Query: 72  DIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLR 130
            +  Y       + Q  A          PGP+TF++     V K  C  + +   + S  
Sbjct: 63  QLLAYVD-----ESQLTAEQLEFAFSKWPGPFTFVMPIKAHVSKYLCGEFDSIAVRVS-- 115

Query: 131 KHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG 190
            H GV+    A+C+A    ++ PL+STS     ++  +    ++AD  G   +D +V G 
Sbjct: 116 AHAGVQ----ALCRA----LNKPLVSTSANLAGEDPALTAAEILADFTGK--IDALVLGE 165

Query: 191 V-RVAEPSTVVDMTGTYPKIIRQGK 214
           +    +PST++D      KI+R G+
Sbjct: 166 LGEQRQPSTIIDARSG--KILRNGQ 188

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Shewanella baltica (strain OS155 / ATCC BAA-1091) (taxid: 325240)

>sp|A1RDY7|RIMN_SHESW tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Shewanella sp. (strain W3-18-1) GN=rimN PE=3 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 93/199 (46%), Gaps = 21/199 (10%)

Query: 18  VVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77
           + +++  G V   PT+ +Y + CD  + +AI++L  +K     K L ++    + +  Y 
Sbjct: 9   IKDIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYV 68

Query: 78  TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKK-CVRYGTTTAKYSLRKHVGVR 136
                 + Q  A          PGP+TF++    +V K  C  + +   + S   H GV+
Sbjct: 69  D-----ESQLTAEQLEFAFSKWPGPFTFVMPIKAQVSKYLCGEFDSIAVRVS--AHAGVQ 121

Query: 137 IPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAE 195
               A+C+A    ++ PL+STS     ++  +    ++AD  G   +D +V G +    +
Sbjct: 122 ----ALCRA----LNKPLVSTSANLAGEDPALTAAEILADFTGK--IDALVLGELGEQRQ 171

Query: 196 PSTVVDMTGTYPKIIRQGK 214
           PST++D      KI+R G+
Sbjct: 172 PSTIIDARSG--KILRNGQ 188

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Shewanella sp. (strain W3-18-1) (taxid: 351745)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
118489827	313	unknown [Populus trichocarpa x Populus d	1.0	0.763	0.804	1e-113
224055737	322	predicted protein [Populus trichocarpa]	1.0	0.742	0.784	1e-111
225451447	306	PREDICTED: uncharacterized protein HI_11	1.0	0.781	0.789	1e-106
255536893	326	sua5, putative [Ricinus communis] gi|223	1.0	0.733	0.751	1e-105
356571525	308	PREDICTED: uncharacterized protein HI_11	0.995	0.772	0.744	1e-105
22330801	307	putative translation factor [Arabidopsis	1.0	0.778	0.740	1e-104
297832740	305	yrdC family protein [Arabidopsis lyrata	1.0	0.783	0.736	1e-103
449455846	309	PREDICTED: uncharacterized protein HI_11	0.974	0.754	0.757	3e-99
147841978	329	hypothetical protein VITISV_012595 [Viti	0.941	0.683	0.697	2e-91
357142058	348	PREDICTED: uncharacterized protein yciO-	0.953	0.655	0.675	1e-90

>gi|118489827|gb|ABK96713.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/241 (80%), Positives = 226/241 (93%), Gaps = 2/241 (0%)

Query: 1   MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
           +YVEAD  G+D+WKLEPV+ELLK+GAVGV+PTDT+YAIVCDLKS+SAIERLRRIKN+EPS
Sbjct: 73  LYVEADELGSDTWKLEPVIELLKQGAVGVIPTDTVYAIVCDLKSNSAIERLRRIKNIEPS 132

Query: 61  KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 120
           KPLSILC SLRDIDTYTTGFPRGDGQGHA+IFRAVKHCLPGPYTFILTASKE+PK+CVR+
Sbjct: 133 KPLSILCHSLRDIDTYTTGFPRGDGQGHADIFRAVKHCLPGPYTFILTASKELPKQCVRF 192

Query: 121 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGP 180
           GTTTAKY+ RK+VG+R+P+DAICQAIL+KMDAPLISTSV+  K+NEWM+DPVVIAD YG 
Sbjct: 193 GTTTAKYASRKNVGIRMPDDAICQAILEKMDAPLISTSVRSPKENEWMIDPVVIADIYGL 252

Query: 181 EGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWM--EEEDANSTAIEDLIPSA 238
           EGLDFVV+GG+RVA+PSTVVDMTG+ PKIIRQGKGPKL+WM  E++D ++  +EDLI SA
Sbjct: 253 EGLDFVVNGGIRVADPSTVVDMTGSSPKIIRQGKGPKLHWMVAEDDDESAFHVEDLIHSA 312

Query: 239 T 239
           T
Sbjct: 313 T 313

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055737|ref|XP_002298628.1| predicted protein [Populus trichocarpa] gi|222845886|gb|EEE83433.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/250 (78%), Positives = 225/250 (90%), Gaps = 11/250 (4%)

Query: 1   MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
           +YVEAD  G+D+WKLEPV+ELLK+GAVGV+PTDT+YAIVCDLKS+SAIERLRRIKN+EPS
Sbjct: 73  LYVEADELGSDTWKLEPVIELLKQGAVGVIPTDTVYAIVCDLKSNSAIERLRRIKNIEPS 132

Query: 61  K---------PLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASK 111
           K         PL ILC SLRDIDTYTTGFPRGDGQGHA+IFRAVKHCLPGPYTFILTASK
Sbjct: 133 KARNMASLHSPLYILCHSLRDIDTYTTGFPRGDGQGHADIFRAVKHCLPGPYTFILTASK 192

Query: 112 EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDP 171
           E+PK+CVRYGTTTAKY+ RK+VG+R+P+DAICQAIL+KMDAPLISTSV+  K+NEWM+DP
Sbjct: 193 ELPKQCVRYGTTTAKYASRKNVGIRMPDDAICQAILEKMDAPLISTSVRSPKENEWMIDP 252

Query: 172 VVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTA- 230
           VVIAD YG EGLDFVV+GG+RVA+PSTVVDMTG+ PKIIRQGKGPKL+WM  ED + +A 
Sbjct: 253 VVIADIYGAEGLDFVVNGGIRVADPSTVVDMTGSSPKIIRQGKGPKLHWMVAEDDDESAF 312

Query: 231 -IEDLIPSAT 239
            +EDLIPSAT
Sbjct: 313 HVEDLIPSAT 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451447|ref|XP_002273946.1| PREDICTED: uncharacterized protein HI_1198 [Vitis vinifera] gi|296082345|emb|CBI21350.3| unnamed protein product [Vitis vinifera]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/242 (78%), Positives = 210/242 (86%), Gaps = 3/242 (1%)

Query: 1   MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
           +YVEADPSG DSWKLEPV +LLKEGAVGV+PTDT+YAIVC L+SHSAIERLRRIK++E S
Sbjct: 65  LYVEADPSGTDSWKLEPVADLLKEGAVGVIPTDTVYAIVCHLRSHSAIERLRRIKDIEAS 124

Query: 61  KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 120
           KPLSILCRSLRDIDTYTTGFP G GQG  NIFRAVKHCLPGPYTFILTASKE+PK+C RY
Sbjct: 125 KPLSILCRSLRDIDTYTTGFPCGIGQGQTNIFRAVKHCLPGPYTFILTASKELPKQCTRY 184

Query: 121 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGP 180
           GTTTAKY+ RK+VGVR+P+DAIC+AILQ MDAPLI+TSVK  K+NEWM+DP+ IAD YGP
Sbjct: 185 GTTTAKYASRKNVGVRMPDDAICKAILQMMDAPLIATSVKSPKENEWMLDPITIADVYGP 244

Query: 181 EGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAI---EDLIPS 237
           EGLDFVVDGGVRVA+PSTVVDMTG  PKIIRQGKGPK  WM  E     AI     LIP 
Sbjct: 245 EGLDFVVDGGVRVADPSTVVDMTGRTPKIIRQGKGPKQPWMVSESDTDFAINGENGLIPY 304

Query: 238 AT 239
           AT
Sbjct: 305 AT 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536893|ref|XP_002509513.1| sua5, putative [Ricinus communis] gi|223549412|gb|EEF50900.1| sua5, putative [Ricinus communis]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/254 (75%), Positives = 215/254 (84%), Gaps = 15/254 (5%)

Query: 1   MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRI------ 54
           +YVEAD SGADSWKL+PV+ELL EGAVGV+PTDT+YA+VC LKSHSA+ERLR +      
Sbjct: 73  VYVEADASGADSWKLDPVIELLNEGAVGVIPTDTVYAMVCHLKSHSAVERLRSLYLMRLF 132

Query: 55  -------KNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFIL 107
                  +     +PLSILCRSLRDID YTTGFPR DGQGHANIFRAVKHCLPGPYTFIL
Sbjct: 133 LILLLSLQFCHFLQPLSILCRSLRDIDIYTTGFPRSDGQGHANIFRAVKHCLPGPYTFIL 192

Query: 108 TASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEW 167
           T+SKE+PK+CVRYGTTTAKY+ RK+VGVRIP+DAICQA+L+KMD PLISTSVK  KDNEW
Sbjct: 193 TSSKELPKQCVRYGTTTAKYASRKNVGVRIPDDAICQAMLEKMDVPLISTSVKGPKDNEW 252

Query: 168 MVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDAN 227
           M+DPVVIADTYGPEGLDFVVDGG+RVA+PSTVVDMT   PKIIRQGKGPKL+WM  ED N
Sbjct: 253 MIDPVVIADTYGPEGLDFVVDGGMRVADPSTVVDMTRVPPKIIRQGKGPKLHWMVAEDDN 312

Query: 228 STA--IEDLIPSAT 239
            T    E+LIPSA+
Sbjct: 313 ETGWHAENLIPSAS 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571525|ref|XP_003553927.1| PREDICTED: uncharacterized protein HI_1198-like [Glycine max]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/239 (74%), Positives = 214/239 (89%), Gaps = 1/239 (0%)

Query: 1   MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
           +Y+EADPS +DSWKLEP+  LLK+GAVGV+PTDT+YAIVCDL+S SAIERLRRIKN+E S
Sbjct: 69  VYIEADPSASDSWKLEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERLRRIKNIEAS 128

Query: 61  KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 120
           KPLSILC S RDID YT GFPRGDGQGHAN+F+AVKH LPGPYTFIL ASKE+PK+C+R+
Sbjct: 129 KPLSILCHSFRDIDKYTAGFPRGDGQGHANLFKAVKHYLPGPYTFILIASKELPKQCIRF 188

Query: 121 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGP 180
           GT++AKY+ RK+VGVR+P+DAICQAIL++MDAPLI TS+K+ K++EWM+DPV+IADTYGP
Sbjct: 189 GTSSAKYASRKNVGVRMPDDAICQAILKEMDAPLICTSIKFQKEDEWMIDPVMIADTYGP 248

Query: 181 EGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAIE-DLIPSA 238
           EGLDFVVDGGVRVA+PSTVVDMT   PK++RQGKGP L+WME ED   T ++ DLIP+ 
Sbjct: 249 EGLDFVVDGGVRVADPSTVVDMTKLPPKVLRQGKGPILHWMELEDDQKTDVDKDLIPAG 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330801|ref|NP_566156.2| putative translation factor [Arabidopsis thaliana] gi|6091731|gb|AAF03443.1|AC010797_19 hypothetical protein [Arabidopsis thaliana] gi|19310491|gb|AAL84979.1| At3g1920/F28J7.25 [Arabidopsis thaliana] gi|23505865|gb|AAN28792.1| At3g1920/F28J7.25 [Arabidopsis thaliana] gi|332640214|gb|AEE73735.1| putative translation factor [Arabidopsis thaliana]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/239 (74%), Positives = 207/239 (86%)

Query: 1   MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
           +Y+E DP G DSWKL+PV++LLK+GAVGV+PTDT+YAI CD K+HSA+ERLRRIK +E S
Sbjct: 69  VYIEVDPCGVDSWKLQPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESS 128

Query: 61  KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 120
           KPLSILCRSLRDIDT+T GFPRGDG GHAN+FRAVK CLPGPYTFILTASKE+PK+CV Y
Sbjct: 129 KPLSILCRSLRDIDTFTMGFPRGDGHGHANVFRAVKQCLPGPYTFILTASKELPKQCVGY 188

Query: 121 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGP 180
           GTT+ KY+ RK+VGVRI +DA+CQAILQ+MDAPLI TSVK  K+NEWM+DP  I D YGP
Sbjct: 189 GTTSVKYASRKNVGVRISDDALCQAILQQMDAPLICTSVKGPKENEWMIDPTAIGDIYGP 248

Query: 181 EGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAIEDLIPSAT 239
           EGLDFVVDGG+RVAEPST+VDMTG YPK+IR+GKGP L WM  ED  S+  +DL+ S T
Sbjct: 249 EGLDFVVDGGIRVAEPSTIVDMTGPYPKVIREGKGPILPWMVVEDDESSLRQDLMASGT 307

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832740|ref|XP_002884252.1| yrdC family protein [Arabidopsis lyrata subsp. lyrata] gi|297330092|gb|EFH60511.1| yrdC family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/239 (73%), Positives = 205/239 (85%)

Query: 1   MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
           +Y+E DP GADSWKL+PV+ELLK+GAVGV+PTDT+YA+VCD K+HSA+ERLRRIK +E S
Sbjct: 67  VYIEVDPFGADSWKLQPVIELLKQGAVGVIPTDTVYALVCDCKNHSAVERLRRIKKIESS 126

Query: 61  KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 120
           KPLSILCRSLRDIDT+T GFPRGD  GHAN+FRAVK CLPGPYTFILTASKE+PK+CV Y
Sbjct: 127 KPLSILCRSLRDIDTFTMGFPRGDAHGHANVFRAVKQCLPGPYTFILTASKELPKQCVGY 186

Query: 121 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGP 180
           GTT+ KY+ RK+VGVRI +D +CQAIL +MDAPLISTSVK  K+NEWM+DP  I D YGP
Sbjct: 187 GTTSVKYASRKYVGVRISDDPLCQAILHEMDAPLISTSVKGPKENEWMIDPTAIGDIYGP 246

Query: 181 EGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAIEDLIPSAT 239
           EGLDF+VDGGVRVAEPST+VDMTG YPK+IRQGKGP L WM  ED +    +D + S T
Sbjct: 247 EGLDFLVDGGVRVAEPSTIVDMTGPYPKVIRQGKGPILPWMVVEDNDFPLRQDFMASGT 305

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455846|ref|XP_004145661.1| PREDICTED: uncharacterized protein HI_1198-like [Cucumis sativus] gi|449502016|ref|XP_004161520.1| PREDICTED: uncharacterized protein HI_1198-like [Cucumis sativus]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 178/235 (75%), Positives = 207/235 (88%), Gaps = 2/235 (0%)

Query: 1   MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
           +YV+A+ SG D WKL+P+V LLKEGAVGV+PTDT+Y IVCDLK+ SAIER++RIKN+EP+
Sbjct: 74  IYVKAE-SGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAIERMQRIKNIEPT 132

Query: 61  KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 120
           KPLSILCRS RDID YTTGFPRGDGQGH++IFR VKHCLPGPYTFILTASKE+PK C+RY
Sbjct: 133 KPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY 192

Query: 121 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGP 180
           GTTTAKY+ RK+VGVRIP+D+ICQAIL+KMD PLISTSVK  K+NEW++DPVVIAD YG 
Sbjct: 193 GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ 252

Query: 181 EGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAI-EDL 234
           EGLDFVVDGGVRVA+PSTVVDMT T PKI+RQGKG +L WM  E  +   I ED+
Sbjct: 253 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPNIGEDI 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841978|emb|CAN72004.1| hypothetical protein VITISV_012595 [Vitis vinifera]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 175/251 (69%), Positives = 194/251 (77%), Gaps = 26/251 (10%)

Query: 1   MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIK----- 55
           +YVEADPSG DSWKLEPV +LLKEGAVGV+PTDT+YAIVC L+SHSAIERLRR++     
Sbjct: 93  LYVEADPSGTDSWKLEPVADLLKEGAVGVIPTDTVYAIVCHLRSHSAIERLRRLQLFPFM 152

Query: 56  ----NVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASK 111
               +V   +PLSILCRSLRDIDTYTTGFP G GQG  NIFRAVKHCLPGP         
Sbjct: 153 FSDVSVSLMQPLSILCRSLRDIDTYTTGFPCGIGQGQTNIFRAVKHCLPGP--------- 203

Query: 112 EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDP 171
                C RYGTTTAKY+ RK+VGVR+P+DAIC+AILQ MDAPLI+TSVK  K+NEWM+DP
Sbjct: 204 -----CTRYGTTTAKYASRKNVGVRMPDDAICKAILQMMDAPLIATSVKSPKENEWMLDP 258

Query: 172 VVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAI 231
           + IAD YGPEGLDFVVDGGVRVA+PSTVVDMTG  PKIIRQGKGPK  WM  E     AI
Sbjct: 259 ITIADVYGPEGLDFVVDGGVRVADPSTVVDMTGRTPKIIRQGKGPKQPWMVSESDTDFAI 318

Query: 232 ---EDLIPSAT 239
                LIP AT
Sbjct: 319 NGENGLIPYAT 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357142058|ref|XP_003572445.1| PREDICTED: uncharacterized protein yciO-like [Brachypodium distachyon]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 156/231 (67%), Positives = 197/231 (85%), Gaps = 3/231 (1%)

Query: 1   MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
           + V+ +PSG D WKL+P+V+L+  GAVGV+PTDT+Y+IVCDL ++ +IERLRRIK +  S
Sbjct: 113 LRVKVEPSGEDFWKLDPIVDLINRGAVGVIPTDTVYSIVCDLSNNDSIERLRRIKGIVNS 172

Query: 61  KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 120
           KPLSILCRSLRDIDTYTTGFP G  QG ANIFRAVK  LPGPYTFIL A+KE+PK+C+++
Sbjct: 173 KPLSILCRSLRDIDTYTTGFPLGTNQGQANIFRAVKRVLPGPYTFILPATKELPKQCIKH 232

Query: 121 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGP 180
           G++T +Y+ R+ VGVRIP+D+ICQAILQ ++ PLI TSVK+L ++EW++DPV IAD Y P
Sbjct: 233 GSST-RYAKRRQVGVRIPDDSICQAILQNLEEPLICTSVKYLSEDEWILDPVTIADIYEP 291

Query: 181 EGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWM--EEEDANST 229
           +GLDF+VDGGVR+A+PSTVVDM G+YP IIRQGKGPKL WM  E++DA ST
Sbjct: 292 QGLDFIVDGGVRIADPSTVVDMAGSYPTIIRQGKGPKLDWMVAEDQDAQST 342

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2078668	307	AT3G01920 [Arabidopsis thalian	1.0	0.778	0.740	1.3e-98
UNIPROTKB|Q8ECV7	206	yciO "RNA binding protein YciO	0.539	0.626	0.379	3.9e-21
TIGR_CMR|SO_3016	206	SO_3016 "Sua5/YciO/YrdC/YwlC f	0.539	0.626	0.379	3.9e-21
UNIPROTKB|Q885M0	209	PSPTO_1811 "Sua5/YciO/YrdC/Ywl	0.644	0.736	0.311	8.3e-19
UNIPROTKB|Q605R9	207	MCA2209 "Sua5/YciO/YrdC/YwlC f	0.707	0.816	0.281	1.7e-18
UNIPROTKB|Q47YC6	206	CPS_3520 "Sua5/YciO/YrdC/YwlC	0.652	0.757	0.329	1.7e-18
TIGR_CMR|CPS_3520	206	CPS_3520 "Sua5/YciO/YrdC/YwlC	0.652	0.757	0.329	1.7e-18
UNIPROTKB|Q83D35	204	CBU_0909 "Sua5/YciO/YrdC/YwlC	0.585	0.686	0.316	4.6e-18
TIGR_CMR|CBU_0909	204	CBU_0909 "Sua5/YciO/YrdC/YwlC	0.585	0.686	0.316	4.6e-18
UNIPROTKB|Q9KSS8	206	VC_1178 "Putative uncharacteri	0.644	0.747	0.311	7.5e-18

TAIR|locus:2078668 AT3G01920 [Arabidopsis thaliana (taxid:3702)]

 Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
 Identities = 177/239 (74%), Positives = 207/239 (86%)

Query:     1 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
             +Y+E DP G DSWKL+PV++LLK+GAVGV+PTDT+YAI CD K+HSA+ERLRRIK +E S
Sbjct:    69 VYIEVDPCGVDSWKLQPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESS 128

Query:    61 KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 120
             KPLSILCRSLRDIDT+T GFPRGDG GHAN+FRAVK CLPGPYTFILTASKE+PK+CV Y
Sbjct:   129 KPLSILCRSLRDIDTFTMGFPRGDGHGHANVFRAVKQCLPGPYTFILTASKELPKQCVGY 188

Query:   121 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGP 180
             GTT+ KY+ RK+VGVRI +DA+CQAILQ+MDAPLI TSVK  K+NEWM+DP  I D YGP
Sbjct:   189 GTTSVKYASRKNVGVRISDDALCQAILQQMDAPLICTSVKGPKENEWMIDPTAIGDIYGP 248

Query:   181 EGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAIEDLIPSAT 239
             EGLDFVVDGG+RVAEPST+VDMTG YPK+IR+GKGP L WM  ED  S+  +DL+ S T
Sbjct:   249 EGLDFVVDGGIRVAEPSTIVDMTGPYPKVIREGKGPILPWMVVEDDESSLRQDLMASGT 307

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ECV7 yciO "RNA binding protein YciO" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 55/145 (37%), Positives = 85/145 (58%)

Query:    15 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
             +   V +LK G V V PTD+ YA+ C +    A+ R+ RI+ +E     S++CR L ++ 
Sbjct:    17 ISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELA 76

Query:    75 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 134
             TY     + D Q     +R +K C PGPYTFI  ASKEVP++         +   +K +G
Sbjct:    77 TYA----KVDNQA----YRILKSCTPGPYTFIFKASKEVPRRL--------QNDKKKTIG 120

Query:   135 VRIPNDAICQAILQKMDAPLISTSV 159
             +R+P++ I  A+L+ +DAPL+STS+
Sbjct:   121 IRVPDNVIALALLEALDAPLMSTSL 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_3016 SO_3016 "Sua5/YciO/YrdC/YwlC family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 55/145 (37%), Positives = 85/145 (58%)

Query:    15 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
             +   V +LK G V V PTD+ YA+ C +    A+ R+ RI+ +E     S++CR L ++ 
Sbjct:    17 ISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELA 76

Query:    75 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 134
             TY     + D Q     +R +K C PGPYTFI  ASKEVP++         +   +K +G
Sbjct:    77 TYA----KVDNQA----YRILKSCTPGPYTFIFKASKEVPRRL--------QNDKKKTIG 120

Query:   135 VRIPNDAICQAILQKMDAPLISTSV 159
             +R+P++ I  A+L+ +DAPL+STS+
Sbjct:   121 IRVPDNVIALALLEALDAPLMSTSL 145

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q885M0 PSPTO_1811 "Sua5/YciO/YrdC/YwlC family protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 53/170 (31%), Positives = 91/170 (53%)

Query:     2 YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 61
             + +  P       ++   E++K G + V PTD+ YA+ C +   SAIER+RR++ ++   
Sbjct:     4 FFQVHPENPQPRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKH 63

Query:    62 PLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYG 121
               +++C  L  +      F + D       FRA+K   PGPYTFIL A++EVP+  +   
Sbjct:    64 NFTLMCCDLSQLGL----FAKVD----TGAFRALKAHTPGPYTFILNATREVPRLIL--- 112

Query:   122 TTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDP 171
                  +  R+ +G+R+P+  I QA+L+++  PL+S S+    D   + DP
Sbjct:   113 -----HPKRRTIGLRVPSHPIAQALLEQLGEPLMSVSLIMPGDTVPLSDP 157

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q605R9 MCA2209 "Sua5/YciO/YrdC/YwlC family protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 52/185 (28%), Positives = 97/185 (52%)

Query:    15 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
             +    E++++G V V PTD+ YA  C L    A+ R+R I+ ++     +++C  L  + 
Sbjct:    17 IRQAAEIVRQGGVIVYPTDSSYAFGCQLDRKDALHRIRTIRQLDEEHNFTLICHDLSQV- 75

Query:    75 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 134
                + F R + +     FR +K   PGPYTF+L A++EVP++         ++  RK +G
Sbjct:    76 ---SAFARINNEA----FRLIKTLTPGPYTFLLEATREVPRRL--------QHPKRKTIG 120

Query:   135 VRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVA 194
             +R+P++A+ Q ++ ++  PL S+++    + E + DP  I +  G      +  G +  A
Sbjct:   121 IRLPDNAVSQMLVAELGEPLFSSTLILPGETEGLADPEDIRERVGTRVELILAAGVIPFA 180

Query:   195 EPSTV 199
             E + V
Sbjct:   181 ETTIV 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q47YC6 CPS_3520 "Sua5/YciO/YrdC/YwlC family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 58/176 (32%), Positives = 92/176 (52%)

Query:     2 YVEAD-PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
             YV  D P G     ++   +++K+G V V PTD+ YA+ C L    A+ER+ RI++++  
Sbjct:     6 YVHPDNPQGR---LMKQAADIIKQGGVIVYPTDSGYALGCHLGDKKALERICRIRDIDKD 62

Query:    61 KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 120
                +++C+ L  I  YT    R D       +R +K   PG YTFI   SKEVPK+ +  
Sbjct:    63 HNFTLVCQDLSQISEYT----RVDNTA----YRLLKSNTPGAYTFIFKGSKEVPKRLLN- 113

Query:   121 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIAD 176
                      +K +G+R+P++ I QA+L ++  P++STS+          DP  I D
Sbjct:   114 -------PKKKTIGIRVPDNTIAQALLTELAEPIMSTSLIMPGQEMAEYDPEQIRD 162

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3520 CPS_3520 "Sua5/YciO/YrdC/YwlC family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 58/176 (32%), Positives = 92/176 (52%)

Query:     2 YVEAD-PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
             YV  D P G     ++   +++K+G V V PTD+ YA+ C L    A+ER+ RI++++  
Sbjct:     6 YVHPDNPQGR---LMKQAADIIKQGGVIVYPTDSGYALGCHLGDKKALERICRIRDIDKD 62

Query:    61 KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 120
                +++C+ L  I  YT    R D       +R +K   PG YTFI   SKEVPK+ +  
Sbjct:    63 HNFTLVCQDLSQISEYT----RVDNTA----YRLLKSNTPGAYTFIFKGSKEVPKRLLN- 113

Query:   121 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIAD 176
                      +K +G+R+P++ I QA+L ++  P++STS+          DP  I D
Sbjct:   114 -------PKKKTIGIRVPDNTIAQALLTELAEPIMSTSLIMPGQEMAEYDPEQIRD 162

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83D35 CBU_0909 "Sua5/YciO/YrdC/YwlC family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 50/158 (31%), Positives = 88/158 (55%)

Query:     3 VEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKP 62
             +   P    +  ++  VE +K G +    TD+ YA+ C L + S  ER+RR++ +  + P
Sbjct:     4 IHIHPDNPQARLIKQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNKAHP 63

Query:    63 LSILCRSLRDIDTYTTGFPRGDGQGHAN-IFRAVKHCLPGPYTFILTASKEVPKKCVRYG 121
              ++LCR L +I  Y            AN +FR +K   PGPYTFIL+A++ VP++     
Sbjct:    64 FTLLCRDLSEIAVYAR---------IANPVFRFLKAHTPGPYTFILSATRAVPRQL---- 110

Query:   122 TTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSV 159
                 ++  RK +G+R+P+  + QAIL+++  PL++ ++
Sbjct:   111 ----QHPKRKTIGIRVPDHRVIQAILEQLQEPLMNVTL 144

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_0909 CBU_0909 "Sua5/YciO/YrdC/YwlC family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 50/158 (31%), Positives = 88/158 (55%)

Query:     3 VEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKP 62
             +   P    +  ++  VE +K G +    TD+ YA+ C L + S  ER+RR++ +  + P
Sbjct:     4 IHIHPDNPQARLIKQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNKAHP 63

Query:    63 LSILCRSLRDIDTYTTGFPRGDGQGHAN-IFRAVKHCLPGPYTFILTASKEVPKKCVRYG 121
              ++LCR L +I  Y            AN +FR +K   PGPYTFIL+A++ VP++     
Sbjct:    64 FTLLCRDLSEIAVYAR---------IANPVFRFLKAHTPGPYTFILSATRAVPRQL---- 110

Query:   122 TTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSV 159
                 ++  RK +G+R+P+  + QAIL+++  PL++ ++
Sbjct:   111 ----QHPKRKTIGIRVPDHRVIQAILEQLQEPLMNVTL 144

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9KSS8 VC_1178 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 53/170 (31%), Positives = 89/170 (52%)

Query:     7 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
             P    +  +   V +++ G V V PTD+ YA+ C L++   +ER+ +I+ ++     ++L
Sbjct:     9 PENPQTRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLL 68

Query:    67 CRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAK 126
             CR L ++  Y     R D       FR +K+  PGPYTFI   +KEVP++ +        
Sbjct:    69 CRDLSELSLYA----RVDNTA----FRLLKNNTPGPYTFIFKGTKEVPRRLMN------- 113

Query:   127 YSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIAD 176
                RK +G+R+PN+ I   +L+ +  PL+STS+    ++    DP  I D
Sbjct:   114 -EKRKTIGIRVPNNKIALDLLEALGEPLMSTSLILPGNDFTESDPEEIRD 162

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P45103	Y1198_HAEIN	No assigned EC number	0.3095	0.8033	0.9275	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
pfam01300	178	pfam01300, Sua5_yciO_yrdC, Telomere recombination	8e-52
COG0009	211	COG0009, SUA5, Putative translation factor (SUA5)	2e-45
PRK11630	206	PRK11630, PRK11630, hypothetical protein; Provisio	3e-37
TIGR00057	201	TIGR00057, TIGR00057, tRNA threonylcarbamoyl adeno	5e-37
PRK10634	190	PRK10634, PRK10634, tRNA(ANN) t(6)A37 threonylcarb	5e-07
TIGR00143	711	TIGR00143, hypF, [NiFe] hydrogenase maturation pro	0.004

>gnl|CDD|216422 pfam01300, Sua5_yciO_yrdC, Telomere recombination

 Score =  165 bits (421), Expect = 8e-52
 Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 18/195 (9%)

Query: 20  ELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTG 79
           E L++G +   PTDT+Y + CD  +  A+ERLR IK     KPL+++   L  +  Y   
Sbjct: 1   EALRQGGIVAYPTDTVYGLGCDATNEEAVERLREIKGRPRDKPLAVMVSDLEQLKKYADE 60

Query: 80  FPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPN 139
                        +  +   PGP T IL ASK    K V  G           VGVR+P+
Sbjct: 61  LE-------EAALKLAERFWPGPITLILPASKSSLPKLVTPG--------LGTVGVRLPD 105

Query: 140 DAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPST 198
             + + +L+ +  PL++TS   L       D   + +  G   +D ++DGG   V   ST
Sbjct: 106 HPLARLLLEALGEPLVATSAN-LSGEPSATDAEEVLEELG-GIVDLILDGGRIPVGVDST 163

Query: 199 VVDMTGTYPKIIRQG 213
           VVD+T   P+I+R+G
Sbjct: 164 VVDLTDGKPRILRRG 178

This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast. Length = 178

>gnl|CDD|223088 COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]

 Score =  150 bits (381), Expect = 2e-45
 Identities = 67/214 (31%), Positives = 100/214 (46%), Gaps = 19/214 (8%)

Query: 5   ADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLS 64
             P       +E  VE L++G V   PTDT+Y +  D  +  A+ERL  IK     KPL 
Sbjct: 6   IHPENPQPRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYEIKQRPSDKPLI 65

Query: 65  ILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTT 124
           +   SL  +  Y                + +K   PGP TFIL A+KEVP++ V  G +T
Sbjct: 66  LHVASLEQLKEYADVPDV--------ARKLLKAFWPGPLTFILPATKEVPRRLVTAGLST 117

Query: 125 AKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLD 184
                   + VR+P+  I  A+++ +  PL STS   L           +   +G + +D
Sbjct: 118 --------IAVRVPDHPIALALIEALGEPLASTSAN-LSGQPSPTTAEEVRADFGGQ-VD 167

Query: 185 FVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPK 217
            ++DGG  R   PST++D+T   P+I+R G    
Sbjct: 168 LIIDGGPCRGGLPSTIIDLTDDPPRILRPGAISL 201

Length = 211

>gnl|CDD|183245 PRK11630, PRK11630, hypothetical protein; Provisional

 Score =  129 bits (325), Expect = 3e-37
 Identities = 64/198 (32%), Positives = 115/198 (58%), Gaps = 19/198 (9%)

Query: 19  VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
           VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ +      +++CR L ++ TY+ 
Sbjct: 21  VEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYS- 79

Query: 79  GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
                        FR +K+  PG YTFIL  +KEVP++ ++          RK +G+R+P
Sbjct: 80  -------FVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQ--------EKRKTIGLRVP 124

Query: 139 NDAICQAILQKMDAPLISTSVKWLKDNEWM-VDPVVIADTYGPEGLDFVVDGGVRVAEPS 197
           ++ I  A+L+ +  P++STS+  L  +++   DP  I D    + +D ++ GG    +P+
Sbjct: 125 SNPIALALLEALGEPMLSTSLM-LPGSDFTESDPEEIKDRLEKQ-VDLIIHGGYLGQQPT 182

Query: 198 TVVDMTGTYPKIIRQGKG 215
           TV+D+T   P ++R+G G
Sbjct: 183 TVIDLTDDTPVVVREGVG 200

Length = 206

>gnl|CDD|232802 TIGR00057, TIGR00057, tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family

 Score =  128 bits (324), Expect = 5e-37
 Identities = 63/204 (30%), Positives = 106/204 (51%), Gaps = 20/204 (9%)

Query: 15  LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
           +E  V++L++G + V PTDT+Y I  D     A+ RL RIK    +KPL++L   L +I+
Sbjct: 11  IEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSNKPLTVLVSDLSEIE 70

Query: 75  TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 134
            Y   +   D        R +K   PGP T +L  + E+P++             RK +G
Sbjct: 71  KYA--YVPDDA------KRLMKKFWPGPLTLVLKKTPEIPRRVS---------GKRKTIG 113

Query: 135 VRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG-VRV 193
           +R+P++ I   +L+++  P+++TS   L       D     D  G + +D ++D G    
Sbjct: 114 IRVPDNPIALELLEELGKPIVATSAN-LSGKPSATDVEEAVDELG-KLVDLIIDAGPCLG 171

Query: 194 AEPSTVVDMTGTYPKIIRQGKGPK 217
            EPST++D+T   PK++R+G G +
Sbjct: 172 GEPSTIIDLTDDTPKVLREGVGSE 195

Has paralogs, but YrdC called a tRNA modification protein. Ref 2 authors say probably heteromultimeric complex. Paralogs may mean its does the final binding to the tRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 201

>gnl|CDD|182603 PRK10634, PRK10634, tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 14/144 (9%)

Query: 15  LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
           +   V++L E  V   PT+ ++ + CD  S +A+ RL  +K     K L ++  +   + 
Sbjct: 10  IAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLK 69

Query: 75  TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 134
            Y       D Q    IF     C PGP TF+  A    P+        T ++     + 
Sbjct: 70  PYIDDSMLTDAQRET-IFS----CWPGPVTFVFPAPATTPR------WLTGRFD---SLA 115

Query: 135 VRIPNDAICQAILQKMDAPLISTS 158
           VR+ +  +  A+ Q    PL+STS
Sbjct: 116 VRVTDHPLVVALCQAYGKPLVSTS 139

Length = 190

>gnl|CDD|232844 TIGR00143, hypF, [NiFe] hydrogenase maturation protein HypF

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 30/203 (14%)

Query: 19  VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
            +LLK+G +  +     + + CD ++   +ERLR  KN  P KP +++   L   +    
Sbjct: 169 AKLLKKGKIIAIKGIGGFHLACDARNDEVVERLRLRKN-RPLKPFAVMSPDLESAEQ--- 224

Query: 79  GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
                    HA +       L  P   I+   K   K  ++     A       +GV +P
Sbjct: 225 ---------HAELNNLECELLTSPAAPIVLLRK---KPDIKLAPNIAPNLPT--IGVMLP 270

Query: 139 NDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV----RVA 194
              +   +LQ +  PL+ TS            P+ I +    + L  + DG +    R+ 
Sbjct: 271 YTPLHHLLLQLLAFPLVMTSANLPG------LPMAIDNAEILDKLQGIADGFLVHNRRIV 324

Query: 195 EP--STVVDMTGTYPKIIRQGKG 215
                +VV         +R+ +G
Sbjct: 325 NRVDDSVVQHVAGEILFLRRSRG 347

A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression [Protein fate, Protein modification and repair]. Length = 711

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
PRK11630	206	hypothetical protein; Provisional	100.0
COG0009	211	SUA5 Putative translation factor (SUA5) [Translati	100.0
TIGR00057	201	Sua5/YciO/YrdC/YwlC family protein. partial match	100.0
PRK10634	190	tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modif	100.0
PF01300	179	Sua5_yciO_yrdC: Telomere recombination; InterPro:	100.0
TIGR00143	711	hypF [NiFe] hydrogenase maturation protein HypF. A	100.0
KOG3051	261	consensus RNA binding/translational regulation pro	99.97
COG0068	750	HypF Hydrogenase maturation factor [Posttranslatio	99.9
COG2192	555	Predicted carbamoyl transferase, NodU family [Post	95.93
KOG3051	261	consensus RNA binding/translational regulation pro	94.94

>PRK11630 hypothetical protein; Provisional

Probab=100.00  E-value=1e-58  Score=395.84  Aligned_cols=203  Identities=32%  Similarity=0.612  Sum_probs=185.7

Q ss_pred             eEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCC
Q 026381            2 YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFP   81 (239)
Q Consensus         2 ~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p   81 (239)
                      ++++++++++.+.+++|+++|++||+|+|||||+|||+|++.|++||+|||++|+|+.+|||+++++|++++.+|+. .+
T Consensus         4 ~~~~~~~~~~~~~i~~a~~~L~~G~vi~~PTdTvYgL~~d~~n~~Av~~l~~lK~R~~~Kpl~ll~~~~~~~~~~~~-~~   82 (206)
T PRK11630          4 FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF-VD   82 (206)
T ss_pred             eEecCCCCCCHHHHHHHHHHHHCCCEEEEeCCChHhhhcCCCCHHHHHHHHHHcCCCCCCCeEEEECCHHHHHHHhc-CC
Confidence            78899999999899999999999999999999999999999999999999999999999999999999999999996 43


Q ss_pred             CCCCCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCC
Q 026381           82 RGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKW  161 (239)
Q Consensus        82 ~~~~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~  161 (239)
                             +.+++++++|||||+|+|+++++.+|..+.        .++.++||||+|+|+++++|++++|.||++||||+
T Consensus        83 -------~~~~~l~~~~wPGplT~Il~a~~~~p~~~~--------~~~~~tigiRip~~~~~~~L~~~~g~PL~~TSAN~  147 (206)
T PRK11630         83 -------NVAFRLMKNNTPGNYTFILKGTKEVPRRLL--------QEKRKTIGLRVPSNPIALALLEALGEPMLSTSLML  147 (206)
T ss_pred             -------HHHHHHHHhcCCCCeEEEEECCCCCCHHHc--------CCCCCeEEEECCCCHHHHHHHHHhCCcEEECCcCc
Confidence                   257899999999999999999999997332        24678999999999999999999999999999999


Q ss_pred             CCCCCCCCCHhHHHHHcCCCcccEEEeCCCCCCCCceEEEEECCCcEEEecCCCCCccce
Q 026381          162 LKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWM  221 (239)
Q Consensus       162 sg~~~~~~~~~~~~~~~~~~~vd~ild~g~~~~~~STIVdl~~~~~~ilR~G~~~~~~~~  221 (239)
                      ||++++..+.+++.+.|++ .+|+|+|+|...+.||||||+++++++|+|+|+++.++|+
T Consensus       148 sG~~~~~~~~~~i~~~~~~-~vd~ildg~~~~~~pSTIvd~~~~~~~ilR~G~~~~~~~~  206 (206)
T PRK11630        148 PGSDFTESDPEEIKDRLEK-QVDLIIHGGYLGQQPTTVIDLTDDTPVVVREGVGDVKPFL  206 (206)
T ss_pred             CCCCCCCCCHHHHHHHhcC-CceEEEeCCCCCCCCCEEEEccCCceEEEecCCCchhhcC
Confidence            9976445788999998885 8999999998767999999999999999999999987764

>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-58  Score=394.95  Aligned_cols=207  Identities=31%  Similarity=0.490  Sum_probs=190.5

Q ss_pred             CeEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccC
Q 026381            1 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGF   80 (239)
Q Consensus         1 ~~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~   80 (239)
                      .++.+++++++.+.+++|+++|++||+|+|||||+|||+|++.|++||+|||++|+|+.+|||+++|+|++++..|+. +
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~l~~G~vVa~PTeTVYGLg~~~~~~~Av~~i~~~K~Rp~~kpLil~~~~~~~l~~~~~-~   80 (211)
T COG0009           2 QIFMIHPENPQPRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYEIKQRPSDKPLILHVASLEQLKEYAD-V   80 (211)
T ss_pred             ceeecCccccchHHHHHHHHHHHcCCEEEEEccchheeecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHhc-C
Confidence            378899999999999999999999999999999999999999999999999999999999999999999999999997 4


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccC
Q 026381           81 PRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVK  160 (239)
Q Consensus        81 p~~~~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN  160 (239)
                      +       +.+++++++|||||+|||+++++..|.+++        +.+.+|||||||+|+++++||+++|.||++||||
T Consensus        81 ~-------~~~~~l~~~fwPGPlT~Il~~~~~~~~~~~--------~~~~~TiavRvP~hpi~~~Li~~~G~Pl~stSAN  145 (211)
T COG0009          81 P-------DVARKLLKAFWPGPLTFILPATKEVPRRLV--------TAGLSTIAVRVPDHPIALALIEALGEPLASTSAN  145 (211)
T ss_pred             C-------HHHHHHHHHhCCCCeEEEEeCCCCCChhhh--------cCCCCeEEEECCCCHHHHHHHHHhCCceEEcCcC
Confidence            4       368999999999999999999999997654        3566789999999999999999999999999999


Q ss_pred             CCCCCCCCCCHhHHHHHcCCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecCCCCCccceeccc
Q 026381          161 WLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED  225 (239)
Q Consensus       161 ~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~~  225 (239)
                      +||++ ++.+.+++.+.|++ ++|+|+|+|. ..+.+|||||++++.++|+|+|.+..+++.++..
T Consensus       146 lsG~p-s~tt~~ev~~~~~~-~v~~iidgg~~~~g~pSTIiDlt~~~~~ilR~G~i~~~~i~~~~~  209 (211)
T COG0009         146 LSGQP-SPTTAEEVRADFGG-QVDLIIDGGPCRGGLPSTIIDLTDDPPRILRPGAISLEEIEKLLG  209 (211)
T ss_pred             cCCCC-CCCCHHHHHHHhcc-cCeEEEeCCccCCCCCceEEECCCCCcEEEeCCCCCHHHHHHHhc
Confidence            99886 68999999999985 8999999987 4799999999999999999999999877665543

>TIGR00057 Sua5/YciO/YrdC/YwlC family protein

Probab=100.00  E-value=3.4e-56  Score=379.09  Aligned_cols=196  Identities=32%  Similarity=0.594  Sum_probs=180.9

Q ss_pred             eCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCC
Q 026381            5 ADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGD   84 (239)
Q Consensus         5 ~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~   84 (239)
                      +|+++++.+.+++++++|++||+|++||||+|||+|++.|++|++|||++|+|+.+|||++||+|++++.+|+. ++   
T Consensus         1 ~~~~~~~~~~i~~a~~~L~~G~ii~~PTdTvYgL~~~~~~~~av~ri~~iK~R~~~Kpl~~l~~~~~~l~~~~~-~~---   76 (201)
T TIGR00057         1 IHPENPSQRGIEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSNKPLTVLVSDLSEIEKYAY-VP---   76 (201)
T ss_pred             CCcCCCCHHHHHHHHHHHHCCCEEEEeCCCHHHhhcCCCCHHHHHHHHHHhCCCCCCCeEEEECCHHHHHHHhc-CC---
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999996 54   


Q ss_pred             CCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCC
Q 026381           85 GQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKD  164 (239)
Q Consensus        85 ~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~  164 (239)
                          +..++++++|||||+|+|+++++.+|+.+.         ++.++||||||+|+++++|++.+|.||++||||+||+
T Consensus        77 ----~~~~~l~~~~~Pgp~T~Il~~~~~~~~~l~---------~~~~tigiRvP~~~~~~~L~~~~g~PL~~TSAN~sG~  143 (201)
T TIGR00057        77 ----DDAKRLMKKFWPGPLTLVLKKTPEIPRRVS---------GKRKTIGIRVPDNPIALELLEELGKPIVATSANLSGK  143 (201)
T ss_pred             ----HHHHHHHHhcCCCCeEEEEECCCCCCHhHc---------CCCCeEEEECCCCHHHHHHHHHhCCCEEECCCCCCCC
Confidence                257899999999999999999999998752         4668999999999999999999999999999999988


Q ss_pred             CCCCCCHhHHHHHcCCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecCCCCCccc
Q 026381          165 NEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYW  220 (239)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G~~~~~~~  220 (239)
                      + ++.+.+++.+.|++ .+|+|+|+|. ..+.+|||||++++.++|+|+|+++ +++
T Consensus       144 ~-~~~~~~~i~~~~~~-~vd~ild~g~~~~~~~STVid~~~~~~~ilR~G~~~-~~i  197 (201)
T TIGR00057       144 P-SATDVEEAVDELGK-LVDLIIDAGPCLGGEPSTIIDLTDDTPKVLREGVGS-EPI  197 (201)
T ss_pred             C-CCCCHHHHHHHhCC-CccEEEcCCCCCCCCCCcEEEccCCceEEEecCCCH-HHH
Confidence            6 57889999999985 8999999995 6789999999999999999999998 554

partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734.

>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional

Probab=100.00  E-value=1.3e-53  Score=360.18  Aligned_cols=187  Identities=23%  Similarity=0.356  Sum_probs=167.4

Q ss_pred             CCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCC
Q 026381            8 SGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQG   87 (239)
Q Consensus         8 ~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~   87 (239)
                      +.++.+.+++++++|++||||+|||||+|||+|++.|++||+|||++|+|+.+|||++|++|++++.+|+....     +
T Consensus         3 ~~~~~~~i~~a~~~L~~G~vv~~PTdTvYgL~~~~~n~~Av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~~~~~-----~   77 (190)
T PRK10634          3 NNLQGDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDSM-----L   77 (190)
T ss_pred             CCccHHHHHHHHHHHHCCCEEEEeCCchhhhhcCCCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHHHHHHhcC-----C
Confidence            34677899999999999999999999999999999999999999999999999999999999999999987321     0


Q ss_pred             chHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCC
Q 026381           88 HANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEW  167 (239)
Q Consensus        88 ~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~  167 (239)
                      .+.+++++++|||||+|||+++++.+|+++.         ++.++||||||+|+++++|++++|.||++||||+||++ +
T Consensus        78 ~~~~~~l~~~~wPGPlTlil~~~~~~p~~l~---------~~~~tigvRiP~~~~~~~ll~~~g~Pl~~TSAN~sG~~-~  147 (190)
T PRK10634         78 TDAQRETIFSCWPGPVTFVFPAPATTPRWLT---------GRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLP-P  147 (190)
T ss_pred             CHHHHHHHHHhCCCCEEEEEECCCCCCHHHc---------CCCCeEEEECCCCHHHHHHHHHhCCcEEECCcccCCCC-C
Confidence            1356789999999999999999999999863         46789999999999999999999999999999999885 5


Q ss_pred             CCCHhHHHHHcCCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecC
Q 026381          168 MVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQG  213 (239)
Q Consensus       168 ~~~~~~~~~~~~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G  213 (239)
                      +.+.+++.+.|++ ++| ++|+|. ..+.||||||++++  +|+|+|
T Consensus       148 ~~~~~~i~~~~~~-~v~-i~dg~~~~~~~pSTIvd~~~~--~ilR~G  190 (190)
T PRK10634        148 CRTVEEVRAQFGA-AFP-VVPGETGGRLNPSEIRDALTG--ELFRQG  190 (190)
T ss_pred             CCCHHHHHHHhCC-CcE-EEcCCCCCCCCCCeEEECCCC--eEEeCC
Confidence            7889999999885 788 589886 45799999999854  899998

>PF01300 Sua5_yciO_yrdC: Telomere recombination; InterPro: IPR006070 The YrdC family of hypothetical proteins are widely distributed in eukaryotes and prokaryotes and occur as: (i) independent proteins, (ii) with C-terminal extensions, and (iii) as domains in larger proteins, some of which are implicated in regulation []

Probab=100.00  E-value=1.2e-52  Score=351.14  Aligned_cols=177  Identities=40%  Similarity=0.655  Sum_probs=153.7

Q ss_pred             HHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchHHHHHHHhcC
Q 026381           20 ELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCL   99 (239)
Q Consensus        20 ~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~~~~l~~~~w   99 (239)
                      |+|++||+|++||||+|||+|+++|++|++|||++|+|+.+|||+++++|++|+.+|+. .+     .++.+++++++||
T Consensus         1 e~Lk~G~vvi~PTdT~ygl~~~~~n~~av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~~-~~-----~~~~~~~l~~~~w   74 (179)
T PF01300_consen    1 EILKAGGVVIYPTDTVYGLGCDAFNPEAVERIYKIKQRPKNKPLILLVSSIEQLEEYVD-SP-----VSPKARRLLEKFW   74 (179)
T ss_dssp             -HHHTT-EEEEEESSSEEEEEETTSHHHHHHHHHHHTSSTTS--EEEESSHHHHHHHEE-TT-------HHHHHHHHHCH
T ss_pred             CccccCCEEEEECCCEEEEEEecCCHHHHHHHHHhhcccCCCCEEEEECCHHHHHHHhh-cc-----ccHHHHHHHHhcc
Confidence            57999999999999999999999999999999999999999999999999999999997 11     1357899999999


Q ss_pred             CCCeEEEeccCCC-CChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCCCCCHhHHHHHc
Q 026381          100 PGPYTFILTASKE-VPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTY  178 (239)
Q Consensus       100 PGplTlIl~~~~~-lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~~~~~~~~~~~~  178 (239)
                      |||+|+|+++++. +|+++.         ++.++||||+|+|+++++|++++|.||++||||+||++ ++.+.+++.+.|
T Consensus        75 Pgp~t~I~~~~~~~l~~~~~---------~~~~ti~vRip~~~~~~~l~~~~g~Pl~~TSAN~sg~~-~~~~~~~i~~~~  144 (179)
T PF01300_consen   75 PGPLTLILPAKKENLPKYLT---------SKRGTIGVRIPDHPILRELLEALGGPLISTSANLSGEP-PATDFEEIIERF  144 (179)
T ss_dssp             SSSEEEEEEEGTTCSHHHHH---------TTTSEEEEECHCSHHHHHHHHHHTS-EEEEESSSTTSS-CTTSHHHHHHHH
T ss_pred             ccCeeEeeccccccCChhhc---------CCCCeEEEEecChHHHHHHHHhcCCceEecccccccCC-CCCCHHHHHHHh
Confidence            9999999999654 888863         57899999999999999999999999999999999985 578999999999


Q ss_pred             CCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecC
Q 026381          179 GPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQG  213 (239)
Q Consensus       179 ~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G  213 (239)
                      .+ .+|+|+|+|. ..+.+|||||+++++++|+|+|
T Consensus       145 ~~-~vd~iv~~~~~~~~~~STIvd~~~~~~~ilR~G  179 (179)
T PF01300_consen  145 GD-KVDLIVDGGEIPSGQPSTIVDLTNGKPKILREG  179 (179)
T ss_dssp             TT-TSSEEEECCHHSSSS--EEEETTSSSSEEEE--
T ss_pred             cc-CceEEEECCCCCCCCCCeEEEeeCCceEEEeeC
Confidence            85 8999999996 5789999999999999999998

The YrdC protein, which consists solely of this domain, forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands []. YrdC from Escherichia coli preferentially binds to double-stranded RNA and DNA. YrdC is predicted to be an rRNA maturation factor, as deletions in its gene lead to immature ribosomal 30S subunits and, consequently, fewer translating ribosomes []. Therefore, YrdC may function by keeping an rRNA structure needed for proper processing of 16S rRNA, especially at lower temperatures. Sua5 is an example of a multi-domain protein that contains an N-terminal YrdC-like domain and a C-terminal Sua5 domain. Sua5 was identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a translation initiation defect in the cytochrome c gene and is required for normal growth in yeast; however its exact function remains unknown []. HypF is involved in the synthesis of the active site of [NiFe]-hydrogenases [].; PDB: 3L7V_A 1KK9_A 1K7J_A 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A 2EQA_A ....

>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF

Probab=100.00  E-value=2.2e-39  Score=318.46  Aligned_cols=191  Identities=18%  Similarity=0.199  Sum_probs=169.5

Q ss_pred             hhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchHH
Q 026381           12 SWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI   91 (239)
Q Consensus        12 ~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~~   91 (239)
                      .+.+++|++.|++||+|++||||+|||+|+++|++||+|||++|+|+ +|||+||++|++++.+|+. ++.       ..
T Consensus       162 ~~~i~~aa~~L~~G~IVaipt~ggy~L~cda~n~~AV~rLr~~K~Rp-~KPlavmv~d~~~~~~~~~-~~~-------~e  232 (711)
T TIGR00143       162 DDALLEAAKLLKKGKIIAIKGIGGFHLACDARNDEVVERLRLRKNRP-LKPFAVMSPDLESAEQHAE-LNN-------LE  232 (711)
T ss_pred             hHHHHHHHHHHhCCCEEEEEcCCcceeecCCCCHHHHHHHHHHhCCC-CCCEEEEECCHHHHHHHhc-CCH-------HH
Confidence            56899999999999999999999999999999999999999999997 7999999999999999997 432       35


Q ss_pred             HHHHHhcCCCCeEEEeccCC--CCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCCCC
Q 026381           92 FRAVKHCLPGPYTFILTASK--EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMV  169 (239)
Q Consensus        92 ~~l~~~~wPGplTlIl~~~~--~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~~~  169 (239)
                      ++++ ..||||+++ +++++  .+|+.+         .++.++||||+|+||+++.|++.+|.||++||||+||++ ++.
T Consensus       233 ~~lL-~~~~~Pivl-l~~~~~~~l~~~v---------~~~~~tiGvrlP~~pl~~~Ll~~~g~PLv~TSAN~SGep-~~~  300 (711)
T TIGR00143       233 CELL-TSPAAPIVL-LRKKPDIKLAPNI---------APNLPTIGVMLPYTPLHHLLLQLLAFPLVMTSANLPGLP-MAI  300 (711)
T ss_pred             HHHH-HcCCCCEEE-EECCCCCCCChhh---------cCCCCEEEEEcCCCHHHHHHHHHcCCcEEECccCCCCCC-CCC
Confidence            6677 458999865 77765  467664         256789999999999999999999999999999999875 678


Q ss_pred             CHhHHHHHcCCCcccEEEeCCC--CCCCCceEEEEECCCcEEEecCCCCCccceecc
Q 026381          170 DPVVIADTYGPEGLDFVVDGGV--RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEE  224 (239)
Q Consensus       170 ~~~~~~~~~~~~~vd~ild~g~--~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~  224 (239)
                      +.+++.+.+.. .+|++++++.  ..+.+||||++++++++|||+|+|+.|.++.+.
T Consensus       301 ~~~e~~~~l~~-~~D~~L~~~r~i~~~~dsSVV~~~~~~~~ilR~~RG~aP~~~~l~  356 (711)
T TIGR00143       301 DNAEILDKLQG-IADGFLVHNRRIVNRVDDSVVQHVAGEILFLRRSRGFAPQPLTLP  356 (711)
T ss_pred             CHHHHHHHhcC-CccEEEeCCCCcCCCCCCceEEEECCeeEEEeccCCCCCcccccC
Confidence            89999888885 8999988776  468999999999999999999999999999997

A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.

>KOG3051 consensus RNA binding/translational regulation protein of the SUA5 family [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=8e-31  Score=224.24  Aligned_cols=191  Identities=24%  Similarity=0.298  Sum_probs=158.9

Q ss_pred             hhHHHHHHHHH-CCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhcc-CCCCCCCCchH
Q 026381           13 WKLEPVVELLK-EGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTG-FPRGDGQGHAN   90 (239)
Q Consensus        13 ~~l~~a~~~L~-~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~-~p~~~~~~~~~   90 (239)
                      +.+..++...+ .++.+++||||+||++++..+..|+.+||++|+|+.++|+++.++++.+++..... ++       +.
T Consensus        16 ~~~~~aa~~~r~~~~~va~pT~t~yg~g~~~~~~~av~~v~~~K~rP~~~pL~~~~~s~~~~~~v~~~~i~-------~~   88 (261)
T KOG3051|consen   16 PALYDAALIVRRTDKRVAFPTETVYGLGASAYNEVAVLRLYKLKNRPADNPLIVHVSSVDQLKRVVAINIP-------SL   88 (261)
T ss_pred             hhhhhhhhheeccCCceecCchhhhhhhhhhhccccchhhhhhhcCccccchhhccccHHHHHHHHhhcch-------hh
Confidence            34444555555 69999999999999999999999999999999999999999999999999998764 33       34


Q ss_pred             HHHHHHhcCCCCeEEEeccCCC-CChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCCCC
Q 026381           91 IFRAVKHCLPGPYTFILTASKE-VPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMV  169 (239)
Q Consensus        91 ~~~l~~~~wPGplTlIl~~~~~-lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~~~  169 (239)
                      .+.|++.+||||+|++++..+. +++.+         +.+..++|+|+|+|+++++||.++|.|++.||||.|+.+.+-.
T Consensus        89 ~~~L~~~l~PGPltlll~~~~~~l~~~~---------~~~~~svAvRiP~~~~a~~li~~~~~Pla~tSAN~Ssr~s~tl  159 (261)
T KOG3051|consen   89 YLPLASYLWPGPLTLLLERADECLSKLT---------NPGLPSVAVRIPDHPVASALIPKLGVPLALTSANASSRPSPTL  159 (261)
T ss_pred             hhHHHhhcCCCceEEEeecchhhccccc---------cCCCcceeEEccCCHHHHHHHHHhCCCccccccccccCCCCcc
Confidence            6789999999999999999884 66653         3456779999999999999999999999999999998864334


Q ss_pred             CHhHHHHHcCCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecCCCCCccce
Q 026381          170 DPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYWM  221 (239)
Q Consensus       170 ~~~~~~~~~~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G~~~~~~~~  221 (239)
                      .....++...  ++++|+|||. ..++.||+++...+.+.|+|.|.+.-++++
T Consensus       160 ai~~~~Dl~~--~i~lilDgG~c~~g~~~~~~~g~~~p~~i~~pgG~~~~~~v  210 (261)
T KOG3051|consen  160 AIHVFADLQP--KIPLILDGGACGSGVESTVVEGSTDPVDILRPGGITGEDIV  210 (261)
T ss_pred             hhhhhhhhcc--chhheecCcccccCcCceeeccccCcceeeccCCccceeEE
Confidence            4444444444  7999999997 689999999998888899999976654443

>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.9e-22  Score=192.60  Aligned_cols=190  Identities=18%  Similarity=0.260  Sum_probs=158.2

Q ss_pred             hhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchHHH
Q 026381           13 WKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIF   92 (239)
Q Consensus        13 ~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~~~   92 (239)
                      .++.++++.|+.|+++++..-.+|+|+|++.|.++|++|++.|+|| .|||++|+.|++.++.|+. +.       +..+
T Consensus       198 ~ai~~a~klL~~G~IvAIKGiGGFhLaCda~~~eaV~~LR~rk~Rp-~KPFAvM~kdl~~i~~~a~-~~-------~~E~  268 (750)
T COG0068         198 EAIRKAAKLLKVGKIVAIKGIGGFHLACDARNEEAVAKLRKRKNRP-LKPFAVMAKDLETIEEFAE-VN-------DEEE  268 (750)
T ss_pred             HHHHHHHHHHhhCCEEEEeecCceeeeecCCchHHHHHHHHhcCCC-CCCceeeeccHHHHHHhhc-cC-------HHHH
Confidence            3889999999999999999999999999999999999999999995 9999999999999999997 32       2455


Q ss_pred             HHHHhcCCCCeEEEeccCCC--CChhhhccCccccccCCCCeEEEEeCChHHHHHHHH-HcCCcEEecccCCCCCCCCCC
Q 026381           93 RAVKHCLPGPYTFILTASKE--VPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQ-KMDAPLISTSVKWLKDNEWMV  169 (239)
Q Consensus        93 ~l~~~~wPGplTlIl~~~~~--lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~-~~g~PL~~TSAN~sg~~~~~~  169 (239)
                      +++..  |-.--+++++++.  +++.         ..++.++|||++|.+|++..|++ ....|+++||||++|++ ...
T Consensus       269 ~lL~S--~~rPIVll~Kk~~~~~~~~---------iAP~l~~iGVMLPYtpLhhLLl~~~~~~~~VmTSaNl~g~P-m~~  336 (750)
T COG0068         269 ELLTS--PSRPIVLLKKKKVFLLESN---------IAPGLHTIGVMLPYTPLHHLLLQESLDIPYVMTSANLPGEP-MAI  336 (750)
T ss_pred             HHhcC--ccCceEEeccccccccccc---------cCCCCCCcceeecCCchhhhhhhhccCceEEEecCCCCCCC-ccc
Confidence            66532  3323344555543  2332         23567889999999999999998 77789999999999875 566


Q ss_pred             CHhHHHHHcCCCcccEEEeCCC--CCCCCceEEEEECCCcEEEecCCCCCccceecc
Q 026381          170 DPVVIADTYGPEGLDFVVDGGV--RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEE  224 (239)
Q Consensus       170 ~~~~~~~~~~~~~vd~ild~g~--~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~  224 (239)
                      +.+++.+.+.. -.|+++...+  ......+||.+.+|+..+||+.+|+.|+++++.
T Consensus       337 dN~eal~kL~~-IADyfL~HNR~I~~r~DDSVVrvV~g~~~~iRrSRGy~P~pi~lp  392 (750)
T COG0068         337 DNEEALEKLKG-IADYFLLHNREIVNRCDDSVVRVVAGRIAFIRRSRGYAPKPIELP  392 (750)
T ss_pred             CCHHHHHHhhh-hhheeeecccccccccCCcceeEeCCceeeeehhcCCCCcceecC
Confidence            77777777763 7899998886  357889999999999999999999999999997

>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]

Probab=95.93  E-value=0.13  Score=49.88  Aligned_cols=150  Identities=19%  Similarity=0.235  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHCCCeEEE-ecCceEE--------EEccCCChHHHHHHHHHhC-CCCCCCeEEEeCChHHHhhhhccCCCC
Q 026381           14 KLEPVVELLKEGAVGVV-PTDTLYA--------IVCDLKSHSAIERLRRIKN-VEPSKPLSILCRSLRDIDTYTTGFPRG   83 (239)
Q Consensus        14 ~l~~a~~~L~~Ggvii~-PTdTvYg--------L~~~~~n~~Av~ri~~lK~-R~~~Kpl~llv~s~~~l~~~~~~~p~~   83 (239)
                      -.+.+++.|..|+||+. -.--=||        |.++|.++...+||....+ |+.=+||+-.+- .|.+.+|.+     
T Consensus       379 l~~~va~~LadgkvVgwfqGRmEfGPRALGnRSILadPr~~~~kd~iN~~vK~Re~FrPFAPsiL-~E~~~~~fe-----  452 (555)
T COG2192         379 LPDRVAELLADGKVVGWFQGRMEFGPRALGNRSILADPRDPGMKDKINLKVKFREGFRPFAPSIL-EEDVERYFE-----  452 (555)
T ss_pred             HHHHHHHHHhCCCeEEEEeeccccCccccCCceeecCCCChHHHHHHHHHhcccCccCCcCcchh-hhhhhHHhh-----
Confidence            46789999999999874 4444444        7889999999999998777 999999976553 234444432     


Q ss_pred             CCCCchHHHHHHHhcCCCC-eEEEeccCC----CCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHH----cCCc-
Q 026381           84 DGQGHANIFRAVKHCLPGP-YTFILTASK----EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQK----MDAP-  153 (239)
Q Consensus        84 ~~~~~~~~~~l~~~~wPGp-lTlIl~~~~----~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~----~g~P-  153 (239)
                                   .--|-| .|++++.++    .+|......|       .....-||=-.+|....|+++    +|.| 
T Consensus       453 -------------~~~~sPyM~~~~~~~~~~r~~lpaV~HvDg-------TaR~QtV~r~~nP~y~~ll~aF~~~TG~gv  512 (555)
T COG2192         453 -------------LPSPSPYMTLVFRVREEFRERLPAVTHVDG-------TARPQTVRRDANPRYYGLLRAFKERTGVGV  512 (555)
T ss_pred             -------------CCCCCCceeeeehhhHHHHhhCCceEeecC-------CccceeeccccChhHHHHHHHHHHhcCCcE
Confidence                         234566 678888654    3666432223       233456666677888888866    4544 


Q ss_pred             EEecccCCCCCCCCCCCHhHHHHHcCCCcccEEEeCC
Q 026381          154 LISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGG  190 (239)
Q Consensus       154 L~~TSAN~sg~~~~~~~~~~~~~~~~~~~vd~ild~g  190 (239)
                      |+-||-|+.|++ ...++.++-..|...++|+.|=++
T Consensus       513 llNTSFN~~GEP-IVcsp~DA~~~f~~t~~d~Lvi~~  548 (555)
T COG2192         513 LLNTSFNVHGEP-IVCSPADAIRTFLSTGLDALVLED  548 (555)
T ss_pred             EEecccccCCCc-eecCHHHHHHHHHhCCCcEEEEcC
Confidence            678999999875 567888887777655788765444

>KOG3051 consensus RNA binding/translational regulation protein of the SUA5 family [Translation, ribosomal structure and biogenesis]

Probab=94.94  E-value=0.022  Score=49.86  Aligned_cols=203  Identities=24%  Similarity=0.099  Sum_probs=115.6

Q ss_pred             hhhHHHHHHHHHCCCeEEEecCceEEEEcc----CCChHHHHHHHHHhCCC----------CCCCeEEEeCChHHHhhhh
Q 026381           12 SWKLEPVVELLKEGAVGVVPTDTLYAIVCD----LKSHSAIERLRRIKNVE----------PSKPLSILCRSLRDIDTYT   77 (239)
Q Consensus        12 ~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~----~~n~~Av~ri~~lK~R~----------~~Kpl~llv~s~~~l~~~~   77 (239)
                      ++....++.+++.+.+..+++++.|+..+.    +.+....+++++.+ ++          .--|+.+|....+.     
T Consensus        37 ~t~yg~g~~~~~~~av~~v~~~K~rP~~~pL~~~~~s~~~~~~v~~~~-i~~~~~~L~~~l~PGPltlll~~~~~-----  110 (261)
T KOG3051|consen   37 ETVYGLGASAYNEVAVLRLYKLKNRPADNPLIVHVSSVDQLKRVVAIN-IPSLYLPLASYLWPGPLTLLLERADE-----  110 (261)
T ss_pred             hhhhhhhhhhhccccchhhhhhhcCccccchhhccccHHHHHHHHhhc-chhhhhHHHhhcCCCceEEEeecchh-----
Confidence            445666778889999999999999986654    44556666666652 11          11245555444332     


Q ss_pred             ccCCCCCCCCchHHHHHHHhcCCCCeEEEeccCC------CCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcC
Q 026381           78 TGFPRGDGQGHANIFRAVKHCLPGPYTFILTASK------EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMD  151 (239)
Q Consensus        78 ~~~p~~~~~~~~~~~~l~~~~wPGplTlIl~~~~------~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g  151 (239)
                                     -+..-+.||--++-+.-.+      .++......+..++..+.+...++++-....++..+...-
T Consensus       111 ---------------~l~~~~~~~~~svAvRiP~~~~a~~li~~~~~Pla~tSAN~Ssr~s~tlai~~~~Dl~~~i~lil  175 (261)
T KOG3051|consen  111 ---------------CLSKLTNPGLPSVAVRIPDHPVASALIPKLGVPLALTSANASSRPSPTLAIHVFADLQPKIPLIL  175 (261)
T ss_pred             ---------------hccccccCCCcceeEEccCCHHHHHHHHHhCCCccccccccccCCCCcchhhhhhhhccchhhee
Confidence                           0111233443333332211      1111111111111123445566777777666666666554


Q ss_pred             CcEEecccCCCCCCCCCCCHhHHHHHcCCCcccEEEeCCCCCCCCceEEEEECCCcEEEecCCCCCccceeccccccccc
Q 026381          152 APLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEEDANSTAI  231 (239)
Q Consensus       152 ~PL~~TSAN~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~~~~~~~~  231 (239)
                      .+..++|.--|-......++.++..-.+...-|+++++|+  ..+||++|.++...+++|+|..+...|+-....-.--.
T Consensus       176 DgG~c~~g~~~~~~~g~~~p~~i~~pgG~~~~~~vv~gGc--a~~~t~~~~~~~~~~~~~pG~~~~h~s~~~~~~~f~~~  253 (261)
T KOG3051|consen  176 DGGACGSGVESTVVEGSTDPVDILRPGGITGEDIVVRGGC--AVESTKVDMTEPGEKVITPGMKYRHYSPTAKVDLFVLR  253 (261)
T ss_pred             cCcccccCcCceeeccccCcceeeccCCccceeEEEecCc--cceeeeecccCCcceeecCCccccccchhhhhhhhccc
Confidence            4556666521111111344555555544334688999996  57899999999999999999999999988776333334


Q ss_pred             cccCCC
Q 026381          232 EDLIPS  237 (239)
Q Consensus       232 ~~~~~~  237 (239)
                      +++|-+
T Consensus       254 ~e~~~~  259 (261)
T KOG3051|consen  254 TELDAS  259 (261)
T ss_pred             hhhhhc
Confidence            455443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
1kk9_A	221	Crystal Structure Of E. Coli Ycio Length = 221		2e-25
1k7j_A	206	Structural Genomics, Protein Tf1 Length = 206		2e-25
1jcu_A	208	Solution Structure Of Mth1692 Protein From Methanob		6e-18
3aje_A	352	Crystal Structure Of S. Tokodaii Sua5 Complexed Wit		7e-06
2eqa_A	352	Crystal Structure Of The Hypothetical Sua5 Protein		1e-05
1hru_A	188	The Structure Of The Yrdc Gene Product From E.Coli		4e-05

>pdb|1KK9|A Chain A, Crystal Structure Of E. Coli Ycio Length = 221

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 19/210 (9%)
Query: 7   PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
           P       +   VE++++G V V PTD+ YA+ C ++  +A ER+ RI+ +      ++ 
Sbjct: 24  PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLX 83
Query: 67  CRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTA 125
           CR L ++ TY+            N+ FR  K+  PG YTFIL  +KEVP++ ++      
Sbjct: 84  CRDLSELSTYSFV---------DNVAFRLXKNNTPGNYTFILKGTKEVPRRLLQ------ 128
Query: 126 KYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDF 185
               RK +G R+P++ I QA+L+ +  P +STS+          DP  I D    + +D 
Sbjct: 129 --EKRKTIGXRVPSNPIAQALLEALGEPXLSTSLXLPGSEFTESDPEEIKDRLEKQ-VDL 185
Query: 186 VVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 215
           ++ GG    +P+TV+D+T   P ++R+G G
Sbjct: 186 IIHGGYLGQKPTTVIDLTDDTPVVVREGVG 215

>pdb|1K7J|A Chain A, Structural Genomics, Protein Tf1 Length = 206

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 19/210 (9%)
Query: 7   PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSIL 66
           P       +   VE++++G V V PTD+ YA+ C ++  +A ER+ RI+ +      ++ 
Sbjct: 9   PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLX 68
Query: 67  CRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTA 125
           CR L ++ TY+            N+ FR  K+  PG YTFIL  +KEVP++ ++      
Sbjct: 69  CRDLSELSTYSF---------VDNVAFRLXKNNTPGNYTFILKGTKEVPRRLLQ------ 113
Query: 126 KYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDF 185
               RK +G R+P++ I QA+L+ +  P +STS+          DP  I D    + +D 
Sbjct: 114 --EKRKTIGXRVPSNPIAQALLEALGEPXLSTSLXLPGSEFTESDPEEIKDRLEKQ-VDL 170
Query: 186 VVDGGVRVAEPSTVVDMTGTYPKIIRQGKG 215
           ++ GG    +P+TV+D+T   P ++R+G G
Sbjct: 171 IIHGGYLGQKPTTVIDLTDDTPVVVREGVG 200

>pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From Methanobacterium Thermoautotrophicum Length = 208

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 105/203 (51%), Gaps = 23/203 (11%)
Query: 15  LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
           LE  + +++ G + + PTDT+Y +  +     A+ RL R+K   P KP+SI    + +I 
Sbjct: 16  LEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIP 75
Query: 75  TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 134
            ++   P GD          ++  LPGPYT +L  ++ +P   +  G++         VG
Sbjct: 76  RFSR--PSGDA------MELMERILPGPYTVVLERNELIP-DVITGGSS--------RVG 118
Query: 135 VRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRV- 193
           +R+P+D IC+ I  +      S ++     +  + +  ++ D    + +D V+D G  + 
Sbjct: 119 IRVPDDEICRRIAARFPVTATSANISGKPPSPRLEE--IVRDL---DAVDLVLDAGDCLD 173
Query: 194 AEPSTVVDMTGTYPKIIRQGKGP 216
            EPSTV+D+T   P+++R+GKGP
Sbjct: 174 MEPSTVIDLTVNPPRVLRRGKGP 196

>pdb|3AJE|A Chain A, Crystal Structure Of S. Tokodaii Sua5 Complexed With L-Threonine And Amppnp Length = 352

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 19/212 (8%)
Query: 3   VEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKP 62
           ++ DP   +  K++   ++++ G     PT+T+Y +  +    +A  ++ + KN     P
Sbjct: 5   IKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNP 64
Query: 63  LSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGT 122
           L +       +       P         +    +   PGP TF+L  ++ VPK+ V  G 
Sbjct: 65  LIVHIADFNQLFEVAKDIPD-------KVLEIAQIVWPGPLTFVLKKTERVPKE-VTAGL 116
Query: 123 TTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEG 182
            T        V VR+P   I   ++++   P+ + S              VI D  G   
Sbjct: 117 DT--------VAVRMPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVIVDLNG--R 166
Query: 183 LDFVVDGG-VRVAEPSTVVDMTGTYPKIIRQG 213
           +D ++DGG       ST++++T   P ++R G
Sbjct: 167 VDVIIDGGHTFFGVESTIINVTVEPPVLLRPG 198

>pdb|2EQA|A Chain A, Crystal Structure Of The Hypothetical Sua5 Protein From Sulfolobus Tokodaii Length = 352

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 19/212 (8%)
Query: 3   VEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKP 62
           ++ DP   +  K++   ++++ G     PT+T+Y +  +    +A  ++ + KN     P
Sbjct: 5   IKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNP 64
Query: 63  LSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGT 122
           L +       +       P         +    +   PGP TF+L  ++ VPK+ V  G 
Sbjct: 65  LIVHIADFNQLFEVAKDIPD-------KVLEIAQIVWPGPLTFVLKKTERVPKE-VTAGL 116
Query: 123 TTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEG 182
            T        V VR P   I   ++++   P+ + S              VI D  G   
Sbjct: 117 DT--------VAVRXPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVIVDLNG--R 166
Query: 183 LDFVVDGG-VRVAEPSTVVDMTGTYPKIIRQG 213
           +D ++DGG       ST++++T   P ++R G
Sbjct: 167 VDVIIDGGHTFFGVESTIINVTVEPPVLLRPG 198

>pdb|1HRU|A Chain A, The Structure Of The Yrdc Gene Product From E.Coli Length = 188

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 14/142 (9%)
Query: 19  VELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78
           +++L E  V   PT+ ++ + CD  S +A+ RL  +K     K L ++  +   +  Y  
Sbjct: 14  IDVLNEERVIAYPTEAVFGVGCDPDSETAVXRLLELKQRPVDKGLILIAANYEQLKPYID 73
Query: 79  GFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIP 138
                D Q      R      PGP TF+  A    P+        T ++     + VR+ 
Sbjct: 74  DTXLTDVQRETIFSR-----WPGPVTFVFPAPATTPRWL------TGRFD---SLAVRVT 119
Query: 139 NDAICQAILQKMDAPLISTSVK 160
           +  +  A+ Q    PL+STS  
Sbjct: 120 DHPLVVALCQAYGKPLVSTSAN 141

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
1k7j_A	206	Protein YCIO, protein TF1; structural genomics, X-	5e-58
1jcu_A	208	Conserved protein MTH1692; mixed alpha-beta struct	9e-30
1hru_A	188	YRDC gene product; protein folding, structural gen	3e-17
2eqa_A	352	Hypothetical protein ST1526; YRDC/RIBB fold, YRDC	2e-13
3vth_A	761	Hydrogenase maturation factor; carbamoyltransfer,	6e-13
3l7v_A	295	Putative uncharacterized protein SMU.1377C; transc	9e-10
3ttc_A	657	HYPF, transcriptional regulatory protein; Zn finge	4e-09

>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A Length = 206

 Score =  181 bits (463), Expect = 5e-58
 Identities = 66/215 (30%), Positives = 115/215 (53%), Gaps = 17/215 (7%)

Query: 2   YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 61
           +    P       +   VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ +    
Sbjct: 4   FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGH 63

Query: 62  PLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYG 121
             +++CR L ++ TY+              FR +K+  PG YTFIL  +KEVP++ +   
Sbjct: 64  NFTLMCRDLSELSTYS--------FVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLL--- 112

Query: 122 TTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPE 181
               K   RK +G+R+P++ I QA+L+ +  P++STS+          DP  I D    +
Sbjct: 113 --QEK---RKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQ 167

Query: 182 GLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGP 216
            +D ++ GG    +P+TV+D+T   P ++R+G G 
Sbjct: 168 -VDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGD 201

>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1 Length = 208

 Score =  109 bits (275), Expect = 9e-30
 Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 49/231 (21%)

Query: 1   MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
           +  +          LE  + +++ G + + PTDT+Y +  +     A+ RL R+K   P 
Sbjct: 2   LIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPH 61

Query: 61  KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 120
           KP+SI    + +I  ++                 ++  LPGPYT +L  ++ +P   +  
Sbjct: 62  KPVSICVSCVDEIPRFSRPSGD--------AMELMERILPGPYTVVLERNELIPDV-ITG 112

Query: 121 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYG- 179
           G++         VG+R+P+D IC+ I  +   P+ +TS                A+  G 
Sbjct: 113 GSSR--------VGIRVPDDEICRRIAARF--PVTATS----------------ANISGK 146

Query: 180 --P----------EGLDFVVDGG-VRVAEPSTVVDMTGTYPKIIRQGKGPK 217
                        + +D V+D G     EPSTV+D+T   P+++R+GKGP 
Sbjct: 147 PPSPRLEEIVRDLDAVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGKGPL 197

>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1 Length = 188

 Score = 76.0 bits (188), Expect = 3e-17
 Identities = 44/216 (20%), Positives = 74/216 (34%), Gaps = 48/216 (22%)

Query: 11  DSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSL 70
               +   +++L E  V   PT+ ++ + CD  S +A+ RL  +K     K L ++  + 
Sbjct: 6   QRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANY 65

Query: 71  RDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLR 130
             +  Y       D Q        +    PGP TF+  A    P + +     +      
Sbjct: 66  EQLKPYIDDTMLTDVQ-----RETIFSRWPGPVTFVFPAPATTP-RWLTGRFDS------ 113

Query: 131 KHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYG---P------- 180
             + VR+ +  +  A+ Q    PL+STS                A+  G           
Sbjct: 114 --LAVRVTDHPLVVALCQAYGKPLVSTS----------------ANLSGLPPCRTVDEVR 155

Query: 181 ---EGLDFVVDGGV-RVAEPSTVVDM-TGTYPKIIR 211
                   VV G       PS + D  TG   ++ R
Sbjct: 156 AQFGAAFPVVPGETGGRLNPSEIRDALTG---ELFR 188

>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A* Length = 352

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 41/220 (18%)

Query: 6   DPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS-KPLS 64
           DP   +  K++   ++++ G     PT+T+Y +  +    +A  ++ + KN  P   PL 
Sbjct: 8   DPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKN-RPVDNPLI 66

Query: 65  ILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTT 124
           +       +       P         +    +   PGP TF+L  ++ VPK+ V  G  T
Sbjct: 67  VHIADFNQLFEVAKDIP-------DKVLEIAQIVWPGPLTFVLKKTERVPKE-VTAGLDT 118

Query: 125 AKYSLRKHVGVRIPNDAICQAILQKMDAPL------ISTSVKWLKDNEWMVDPV----VI 174
                   V VR+P   I   ++++   P+      ++T             P     VI
Sbjct: 119 --------VAVRMPAHPIALQLIRESGVPIAAPSANLATRPS----------PTKAEDVI 160

Query: 175 ADTYGPEGLDFVVDGG-VRVAEPSTVVDMTGTYPKIIRQG 213
            D  G   +D ++DGG       ST++++T   P ++R G
Sbjct: 161 VDLNG--RVDVIIDGGHTFFGVESTIINVTVEPPVLLRPG 198

>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A Length = 761

 Score = 66.7 bits (163), Expect = 6e-13
 Identities = 36/223 (16%), Positives = 79/223 (35%), Gaps = 32/223 (14%)

Query: 6   DPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSI 65
                D   ++ V + LKEG +  +     + +  +     A+  LRR K     KP ++
Sbjct: 197 GEGCFDDE-IKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKK-RYGKPFAV 254

Query: 66  LCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTA 125
           + R + ++  Y    P         +  +       P   +    +++ K  +     T 
Sbjct: 255 MMRDVEEVKKYCIVSPE-----EERLLLSQ----RRPIVLLKKKGEKLAKG-IADDLDT- 303

Query: 126 KYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGL-- 183
                  +GV +P   I   +++++D P++ TS   + +     +P+   +    E L  
Sbjct: 304 -------LGVMLPYAPIHYLLMEEIDFPIVMTSGN-VSE-----EPICKDNEEALEKLKD 350

Query: 184 --DFVVDGGVRVAEP--STVVDMTGTYPKIIRQGKGPKLYWME 222
             D  +     +      +V        +IIR+ +G     + 
Sbjct: 351 IADVFLLNNRDIVNRIDDSVTSFNAGAERIIRRARGYAPQPIL 393

>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans} Length = 295

 Score = 56.5 bits (136), Expect = 9e-10
 Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 18/156 (11%)

Query: 11  DSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSL 70
            +   E    +  EG V V PT   Y I+        +ER    K    +KP  +LC S+
Sbjct: 43  GNLSQEGFEIVKGEGGVIVCPTKVGYIIMTS--DKKGLERKFEAKKRNRNKPGVVLCGSM 100

Query: 71  RDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTF--ILTASKEVPKKCVRYGT------ 122
            ++       P         I    +           IL    E  +K   YG       
Sbjct: 101 EELRALAQLTPE--------IDAFYQKHWDEDILLGCILPWKAEAYEKLKAYGDGREELM 152

Query: 123 TTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTS 158
           T  + +    +   +  + I + + +K    + ++S
Sbjct: 153 TDIRGTSCFVIKFGVAGEQIAKEMWEKEGRMVYASS 188

>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A Length = 657

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 24/156 (15%)

Query: 3   VEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKP 62
           V           L+  +  LK G +  +     + + CD ++ +A+  LR  K+  P+KP
Sbjct: 102 VSHGEHAEQEAALQAAIAQLKMGNIVAIKGIGGFHLACDARNSNAVATLRARKH-RPAKP 160

Query: 63  LSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGT 122
           L+++      +                +  R +      P   +           +  G 
Sbjct: 161 LAVMLPVADGLP---------------DAARQLLTTPAAPIVLVDKKYVPELCDDIAPGL 205

Query: 123 TTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTS 158
                     VGV +P + +   +LQ++  PL+ TS
Sbjct: 206 NE--------VGVMLPANPLQHLLLQELQCPLVMTS 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
1k7j_A	206	Protein YCIO, protein TF1; structural genomics, X-	100.0
2eqa_A	352	Hypothetical protein ST1526; YRDC/RIBB fold, YRDC	100.0
1jcu_A	208	Conserved protein MTH1692; mixed alpha-beta struct	100.0
1hru_A	188	YRDC gene product; protein folding, structural gen	100.0
3vth_A	761	Hydrogenase maturation factor; carbamoyltransfer,	100.0
3ttc_A	657	HYPF, transcriptional regulatory protein; Zn finge	100.0
3l7v_A	295	Putative uncharacterized protein SMU.1377C; transc	100.0
4g9i_A	772	Hydrogenase maturation protein HYPF; zinc finger,	100.0
3ven_A	576	O-carbamoyltransferase TOBZ; antibiotic biosynthes	96.26

>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A

Probab=100.00  E-value=3.2e-56  Score=379.32  Aligned_cols=202  Identities=32%  Similarity=0.614  Sum_probs=185.7

Q ss_pred             eEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCC
Q 026381            2 YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFP   81 (239)
Q Consensus         2 ~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p   81 (239)
                      ++++|++|++.+.+++|+++|++||+|+|||||+|||+|++.|++|++|||++|+|+.+|||+++|+|++++.+|++ ++
T Consensus         4 ~~~~~~~~~~~~~i~~a~~~L~~G~iva~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~-~~   82 (206)
T 1k7j_A            4 FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF-VD   82 (206)
T ss_dssp             EEECCSSSCCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBC-CC
T ss_pred             eEecCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHhc-CC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999995 44


Q ss_pred             CCCCCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCC
Q 026381           82 RGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKW  161 (239)
Q Consensus        82 ~~~~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~  161 (239)
                             +..++++++|||||+|+|+++++.+|++++        .++.+|||||+|+||++++|++++|.||++||||+
T Consensus        83 -------~~~~~ll~~~~PGp~T~il~~~~~~p~~~~--------~~~~~tvgvR~P~~p~~~~Ll~~~g~Pl~~TSAN~  147 (206)
T 1k7j_A           83 -------NVAFRLMKNNTPGNYTFILKGTKEVPRRLL--------QEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLML  147 (206)
T ss_dssp             -------HHHHHHHHTSCSSSEEEEEEBCTTSCGGGS--------CTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBC
T ss_pred             -------HHHHHHHHcCCCCCeEEEEECCCCCCHHHc--------CCCCCeEEEEecCCHHHHHHHHHhCCceEECCccc
Confidence                   357899999999999999999999998542        24678999999999999999999999999999999


Q ss_pred             CCCCCCCCCHhHHHHHcCCCcccEEEeCCCCCCCCceEEEEECCCcEEEecCCCCCccc
Q 026381          162 LKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYW  220 (239)
Q Consensus       162 sg~~~~~~~~~~~~~~~~~~~vd~ild~g~~~~~~STIVdl~~~~~~ilR~G~~~~~~~  220 (239)
                      ||++.++.+.+++.+.|+. .+|+|+|+|.....+|||||++++.++|+|+|.++.+.+
T Consensus       148 sG~~~p~~~~~~~~~~l~~-~vd~ild~g~~~~~~STVvd~~~~~~~ilR~G~g~~~~~  205 (206)
T 1k7j_A          148 PGSEFTESDPEEIKDRLEK-QVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPF  205 (206)
T ss_dssp             TTCSSBCCCHHHHHHHHTT-TCSEEEECCCCCSCCCEEEECGGGCCEEEECCSSCSGGG
T ss_pred             CCCCCCCCCHHHHHHHhCC-CCcEEEeCCCCCCCCCeEEEeeCCcEEEEEeCCCChHHc
Confidence            9976556899999999974 899999999755689999999988999999999987554

>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*

Probab=100.00  E-value=1e-54  Score=395.07  Aligned_cols=207  Identities=19%  Similarity=0.321  Sum_probs=188.0

Q ss_pred             CeEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccC
Q 026381            1 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGF   80 (239)
Q Consensus         1 ~~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~   80 (239)
                      +++.+|++||+.+.+++|+++|++||+|+|||||+|||+|+++|++||+|||++|+|+.+|||+++|+|++++.+|+..+
T Consensus         3 ~~~~i~~~~~~~~~i~~aa~~L~~G~iVa~PTeTvYGLg~da~n~~AV~rI~~~K~Rp~~kPliv~v~d~~~l~~~~~~i   82 (352)
T 2eqa_A            3 QIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAKDI   82 (352)
T ss_dssp             EEEECCSSSCCHHHHHHHHHHHHTTCCEEECCSSSCEEEEETTCHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHEESC
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHcCCEEEEECCCEeEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHHHhC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999545


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccC
Q 026381           81 PRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVK  160 (239)
Q Consensus        81 p~~~~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN  160 (239)
                      +       +.+++++++|||||+|||+|+++.+|++++         ++.+|||||||+||++++|++.+|.||++||||
T Consensus        83 ~-------~~~~~Ll~~fwPGPlTlIlp~~~~lp~~v~---------~g~~tvgvRvP~~p~~~~Ll~~~g~PL~atSAN  146 (352)
T 2eqa_A           83 P-------DKVLEIAQIVWPGPLTFVLKKTERVPKEVT---------AGLDTVAVRMPAHPIALQLIRESGVPIAAPSAN  146 (352)
T ss_dssp             C-------HHHHHHHHHHCSSSEEEEEEECTTSCHHHH---------TTCSEEEEECCCCHHHHHHHHHHTSCEEECBSS
T ss_pred             C-------HHHHHHHHhCCCCCEEEEEECCCcCCHhHc---------CCCCeEEEEccCcHHHHHHHHHhCCcEEECccc
Confidence            4       368899999999999999999999999853         577899999999999999999999999999999


Q ss_pred             CCCCCCCCCCHhHHHHHcCCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecCCCCCccceeccc
Q 026381          161 WLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED  225 (239)
Q Consensus       161 ~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~~  225 (239)
                      +||++ +.++.+++.+.|+. .+|+|+|+|. ..+.+|||||++++.++|||+|.++.+++.++..
T Consensus       147 ~SG~p-~~t~~~~v~~~l~~-~vd~iLdgg~~~~g~~STVvd~~~~~~~iLR~G~i~~e~i~~~l~  210 (352)
T 2eqa_A          147 LATRP-SPTKAEDVIVDLNG-RVDVIIDGGHTFFGVESTIINVTVEPPVLLRPGPFTIEELKKLFG  210 (352)
T ss_dssp             CTTSC-CCCSHHHHHHHHTT-TSSEEEECCCCSSCSCCEEEECSCCC-EEEECCSSCHHHHHHHCT
T ss_pred             cCCCC-CCCCHHHHHHHhcC-cCCEEecCCccCCCCCCeeEECCCCceEEEcCCCCCHHHHHHHhC
Confidence            99886 56888888888884 8999999998 4688999999999899999999998766654443

>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1

Probab=100.00  E-value=8.6e-55  Score=371.01  Aligned_cols=198  Identities=28%  Similarity=0.490  Sum_probs=183.3

Q ss_pred             CeEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccC
Q 026381            1 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGF   80 (239)
Q Consensus         1 ~~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~   80 (239)
                      ||+.+|++|++.+.+++|+++|++||+|+|||||+|||+|+++|++|++|||++|+|+.+|||+++|+|++++.+|++ +
T Consensus         2 ~~~~~~~~~~~~~~i~~a~~~L~~G~vVa~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~v~~~~~~~~~~~-~   80 (208)
T 1jcu_A            2 LIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSR-P   80 (208)
T ss_dssp             CSCCCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTTEE-C
T ss_pred             eEEEecCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHhc-C
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999999996 5


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccC
Q 026381           81 PRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVK  160 (239)
Q Consensus        81 p~~~~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN  160 (239)
                      +       +..++++++|||||+|+|+++++.+|+++.         ++.+|||||+|+||++++|++++  ||++||||
T Consensus        81 ~-------~~~~~ll~~~wPgp~T~il~~~~~~p~~v~---------~~~~tvgvR~P~~p~~~~Ll~~~--Pl~~TSAN  142 (208)
T 1jcu_A           81 S-------GDAMELMERILPGPYTVVLERNELIPDVIT---------GGSSRVGIRVPDDEICRRIAARF--PVTATSAN  142 (208)
T ss_dssp             C-------HHHHHHHHHSCSSSEEEEEEECSCCCHHHH---------TTTTEEEEECCSCHHHHHHHHHS--CEEEEECC
T ss_pred             C-------HHHHHHHHhcCCCCeEEEEeCCccCCHhhc---------CCCCeEEEEeCCCHHHHHHHHHh--HHHccCcc
Confidence            4       357899999999999999999999999853         56789999999999999999999  99999999


Q ss_pred             CCCCCCCCCCHhHHHHHcCCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecCCCCCccc
Q 026381          161 WLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYW  220 (239)
Q Consensus       161 ~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G~~~~~~~  220 (239)
                      +||++ ++.+.+++.+.| . .+|+|+|+|. ..+.+|||||++++.++|+|+|.++.+++
T Consensus       143 ~sG~p-~~~~~~~~~~~l-~-~vd~ild~g~~~~~~~STVvd~~~~~~~ilR~G~~~~~~i  200 (208)
T 1jcu_A          143 ISGKP-PSPRLEEIVRDL-D-AVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGKGPLDPV  200 (208)
T ss_dssp             SSSCC-SCSCHHHHHHHS-S-SSEECCSSCCCSCSCCCEEECCCSSSCCEEECCCSSCCCC
T ss_pred             cCCCC-CCCCHHHHHHHh-C-cCCEEEeCCCccCCCCCEEEEeeCCcEEEEecCCCCHHHH
Confidence            99886 568999999988 5 8999999995 56789999999988999999999997554

>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1

Probab=100.00  E-value=6.7e-51  Score=342.00  Aligned_cols=184  Identities=21%  Similarity=0.328  Sum_probs=165.8

Q ss_pred             CCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhcc--CCCCC
Q 026381            7 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTG--FPRGD   84 (239)
Q Consensus         7 ~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~--~p~~~   84 (239)
                      +.+++.+.+++|+++|++||+|+|||||+|||+|++.|++|++|||++|+|+.+|||++||+|++++.+|+..  ++   
T Consensus         2 ~~~~~~~~i~~a~~~L~~G~iva~ptdt~ygL~~da~~~~av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~---   78 (188)
T 1hru_A            2 NNNLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLT---   78 (188)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCC---
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEeCCCEeeeEEcCCCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHHhhcCCC---
Confidence            4667888999999999999999999999999999999999999999999999999999999999999999862  33   


Q ss_pred             CCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCC
Q 026381           85 GQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKD  164 (239)
Q Consensus        85 ~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~  164 (239)
                          +..+++++++||||+|||+++++.+|+++.         ++.++||||+|+||++++|++++|.||++||||+||+
T Consensus        79 ----~~~~~~~~~~~pgP~tlil~~~~~~p~~v~---------~~~~tvgvR~p~~p~~~~Ll~~~g~Pl~~TSaN~sG~  145 (188)
T 1hru_A           79 ----DVQRETIFSRWPGPVTFVFPAPATTPRWLT---------GRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGL  145 (188)
T ss_dssp             ----HHHHHHHHTTCSSSEEEEEECCTTSCHHHH---------TTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTS
T ss_pred             ----HHHHHHHHhCCCCCEEEEEECCCCCCHhHc---------CCCCeEEEEcCCCHHHHHHHHHhCCeEEEccCCCCCC
Confidence                356789999999999999999999999853         4678899999999999999999999999999999988


Q ss_pred             CCCCCCHhHHHHHcCCCcccEEEeCCCC-CCCCceEEEEECCCcEEEe
Q 026381          165 NEWMVDPVVIADTYGPEGLDFVVDGGVR-VAEPSTVVDMTGTYPKIIR  211 (239)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~vd~ild~g~~-~~~~STIVdl~~~~~~ilR  211 (239)
                      + ++.+.+++.+.|+. .+ +|+|||.. .+.+|||||++++  +|+|
T Consensus       146 p-~~~~~~~~~~~l~~-~v-~ildgg~~~~~~~STIvd~~~~--~ilR  188 (188)
T 1hru_A          146 P-PCRTVDEVRAQFGA-AF-PVVPGETGGRLNPSEIRDALTG--ELFR  188 (188)
T ss_dssp             C-CCCSHHHHHHHHCT-TS-CBCCCCCCSSCCCCEEEETTTS--SBCC
T ss_pred             C-CCCCHHHHHHHhCC-CE-EEEeCCCCCCCCCCeEEECcCC--EEEC
Confidence            5 57899999999985 78 89999984 5789999999864  6766

>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A

Probab=100.00  E-value=1.8e-43  Score=348.36  Aligned_cols=193  Identities=17%  Similarity=0.203  Sum_probs=175.3

Q ss_pred             ChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchH
Q 026381           11 DSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHAN   90 (239)
Q Consensus        11 ~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~   90 (239)
                      ..+.+++|+++|++||||++||||+|||+|+++|++||+|||++|+|+ +|||+||++|++++.+|+. ++       +.
T Consensus       201 ~~~~i~~aa~~L~~G~IVa~pt~t~YgL~cda~n~~AV~rL~~~K~Rp-~KPl~vmv~dl~~l~~~~~-v~-------~~  271 (761)
T 3vth_A          201 FDDEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRY-GKPFAVMMRDVEEVKKYCI-VS-------PE  271 (761)
T ss_dssp             CSCHHHHHHHHHHTTCCEEEECSSSEEEECBTTCHHHHHHHHHHHTCC-SSCCCEECSSHHHHHHHBC-CC-------HH
T ss_pred             chHHHHHHHHHHHcCCEEEEECCcEEEEEecCCCHHHHHHHHHHhCCC-CCCeEEEeCCHHHHHHHcc-CC-------HH
Confidence            456899999999999999999999999999999999999999999999 9999999999999999996 54       35


Q ss_pred             HHHHHHhcCCCCeEEEeccCC-CCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCCCC
Q 026381           91 IFRAVKHCLPGPYTFILTASK-EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMV  169 (239)
Q Consensus        91 ~~~l~~~~wPGplTlIl~~~~-~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~~~  169 (239)
                      .++++++ ||||+| |+++++ .+|+++         .++.+|||||+|+||+++.|++.+|.||++||||+||++ ++.
T Consensus       272 ~~~ll~~-~pgPit-lL~~~~~~lp~~v---------~~~~~tvGvRlP~~pl~~~Ll~~~g~PLv~TSAN~SG~p-~~~  339 (761)
T 3vth_A          272 EERLLLS-QRRPIV-LLKKKGEKLAKGI---------ADDLDTLGVMLPYAPIHYLLMEEIDFPIVMTSGNVSEEP-ICK  339 (761)
T ss_dssp             HHHHHHS-TTCCEE-EEEBCSSCCCTTS---------STTCSEEEEECCCSHHHHHHHHHCSSCEECEESSSTTSC-CCC
T ss_pred             HHHHHhC-CCCCEE-EEECCCCCCCHhH---------cCCCCeEEEEecCCHHHHHHHHHcCCeEEEcCcccCCCC-CCC
Confidence            7789987 999999 577776 788874         357789999999999999999999999999999999875 678


Q ss_pred             CHhHHHHHcCCCcccEEEeCCC--CCCCCceEEEEECCCcEEEecCCCCCccceeccc
Q 026381          170 DPVVIADTYGPEGLDFVVDGGV--RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED  225 (239)
Q Consensus       170 ~~~~~~~~~~~~~vd~ild~g~--~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~~  225 (239)
                      +.+++.+.+.+ .+|+|||+|.  ..+.+|||||+++++++|||+|+|+.|.++.+..
T Consensus       340 ~~~e~~~~l~~-~vD~iLd~~r~i~~~~~STVvd~~~~~~~iLR~grG~~P~~~~l~~  396 (761)
T 3vth_A          340 DNEEALEKLKD-IADVFLLNNRDIVNRIDDSVTSFNAGAERIIRRARGYAPQPILLKK  396 (761)
T ss_dssp             SHHHHHHHTTT-TCSEEEEESSCCSSCCCCCEECEETTEECCSBCCTTTTTCCEECSS
T ss_pred             CHHHHHHHccC-cCCEEEECCCCccCCCCCeEEEEECCcEEEEecCCCCCCCccccCC
Confidence            89999898885 8999999874  5789999999999999999999999999999864

>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A

Probab=100.00  E-value=3.2e-41  Score=327.24  Aligned_cols=184  Identities=17%  Similarity=0.194  Sum_probs=165.4

Q ss_pred             hhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchHH
Q 026381           12 SWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI   91 (239)
Q Consensus        12 ~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~~   91 (239)
                      .+.+++|+++|++||||++||||+|||+|++.|++||+|||++|+|+ +|||+||++|+++       ++       +..
T Consensus       111 ~~~i~~aa~~L~~G~IVa~pt~ggYgL~cda~n~~AV~rL~~~K~Rp-~KPlavm~~dl~~-------v~-------~~~  175 (657)
T 3ttc_A          111 EAALQAAIAQLKMGNIVAIKGIGGFHLACDARNSNAVATLRARKHRP-AKPLAVMLPVADG-------LP-------DAA  175 (657)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSSEEEEEETTCHHHHHHHHHHTTCS-SSCCCEECSCCTT-------SC-------HHH
T ss_pred             hHHHHHHHHHHHcCCEEEEECCceeEEEeecCCHHHHHHHHHHhCCC-CCCEEEEECChHH-------CC-------HHH
Confidence            46899999999999999999999999999999999999999999998 8999999999982       22       246


Q ss_pred             HHHHHhcCCCCeEEEeccCC-CCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCCCCC
Q 026381           92 FRAVKHCLPGPYTFILTASK-EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVD  170 (239)
Q Consensus        92 ~~l~~~~wPGplTlIl~~~~-~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~~~~  170 (239)
                      +++++. ||||+|+|+++++ .+|+++         .++.+|||||+|+||+++.|++.+|.||++||||+||++ ++.+
T Consensus       176 ~~ll~~-~pgPiTli~~~~~~~lp~~v---------~~~~~tvGvRlP~~pl~~~Ll~~~g~PLv~TSAN~SG~p-~~~~  244 (657)
T 3ttc_A          176 RQLLTT-PAAPIVLVDKKYVPELCDDI---------APGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKP-PAIS  244 (657)
T ss_dssp             HHHHTS-TTCCEEEEEGGGCTTSCTTS---------STTCSEEEEECCCSHHHHHHHHHHCSCEEEEECCCTTSC-CCCS
T ss_pred             HHHHhc-CCCCEEEEEeCCcCCCCHHH---------CCCCCceEEEeCCCHHHHHHHHHcCCCeEECCcccCCCC-CCCC
Confidence            788877 9999999999876 588875         257789999999999999999999999999999999875 6788


Q ss_pred             HhHHHHHcCCCcccEEEeCCC--CCCCCceEEEEECCCcEEEecCCCCCccceeccc
Q 026381          171 PVVIADTYGPEGLDFVVDGGV--RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED  225 (239)
Q Consensus       171 ~~~~~~~~~~~~vd~ild~g~--~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~~  225 (239)
                      .+++.+.+.+ .+|+|||+|.  ..+.+|||||  + +++|||+|+++.|.++.+..
T Consensus       245 ~~e~~~~l~~-~vD~iLd~gr~i~~~~dsSVV~--~-~~~ilRrgrG~~p~~~~l~~  297 (657)
T 3ttc_A          245 NEQALEDLQG-IADGFLIHNRDIVQRMDDSVVR--E-SGEMLRRSRGYVPDALALPP  297 (657)
T ss_dssp             HHHHHHHHTT-TCSEEEEESSCCCSCCCCCEEE--T-TCCEEECCTTTTTCCEECCT
T ss_pred             HHHHHHHhcC-CCeEEEECCCcccCCCCCcEEE--C-CCeEEEcCCCCCCCccccCc
Confidence            9999999985 8999999985  3689999999  5 89999999999999999874

>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans}

Probab=100.00  E-value=1.1e-42  Score=308.57  Aligned_cols=201  Identities=15%  Similarity=0.146  Sum_probs=160.6

Q ss_pred             ChhhHHHHHHHHH-CCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCch
Q 026381           11 DSWKLEPVVELLK-EGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHA   89 (239)
Q Consensus        11 ~~~~l~~a~~~L~-~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~   89 (239)
                      +.+.+++|+++|+ +||||+|||||+|||+|  +|++||+|||++|+|+.+|||++||+|++++.+|+. ++       +
T Consensus        42 ~~~~i~~Aa~~L~~~GgIVa~PTdTvYGL~c--~n~~AV~rL~~iK~Rp~~KPl~vmv~dl~~l~~~~~-v~-------~  111 (295)
T 3l7v_A           42 DGNLSQEGFEIVKGEGGVIVCPTKVGYIIMT--SDKKGLERKFEAKKRNRNKPGVVLCGSMEELRALAQ-LT-------P  111 (295)
T ss_dssp             CSSCCHHHHHHHHSTTCEEEEEETTEEEEEE--SSHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHBC-CC-------H
T ss_pred             ChHHHHHHHHHHHHCCCEEEEECCCEEEEEE--cCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHhc-CC-------H
Confidence            3457899999999 99999999999999999  899999999999999999999999999999999996 44       3


Q ss_pred             HHHHHHHhcCCCCeEE--EeccCC----CCC------hhhhccCccccccCCCCe----EEEEeCChHHHHHHHHHcCCc
Q 026381           90 NIFRAVKHCLPGPYTF--ILTASK----EVP------KKCVRYGTTTAKYSLRKH----VGVRIPNDAICQAILQKMDAP  153 (239)
Q Consensus        90 ~~~~l~~~~wPGplTl--Il~~~~----~lp------~~l~~~g~~t~~~~~~~t----igvRiP~~~~~~~Ll~~~g~P  153 (239)
                      ..++++++|||||+|+  |+|+++    .+|      ..+        ..++.+|    ||||+|+||++++|++++|.|
T Consensus       112 ~~~~Ll~~~wPGPiTlT~ILp~k~~a~~~lp~~~~~~~~~--------v~~g~~t~~~~VGVRvP~~pl~~~Ll~~~g~P  183 (295)
T 3l7v_A          112 EIDAFYQKHWDEDILLGCILPWKAEAYEKLKAYGDGREEL--------MTDIRGTSCFVIKFGVAGEQIAKEMWEKEGRM  183 (295)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEEBCHHHHHHHHHTCSCTHHH--------HSCTTSEEEEEESSCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHhcCCCCceeeEEEECCccccccCCcccccchhh--------ccCCCCCcceeeEEEeCCCHHHHHHHHHcCCC
Confidence            5789999999999975  999653    354      222        2357789    999999999999999999999


Q ss_pred             EEecccCCCCCCCCCCCHhHHHHHcCCCcccEEEeCCC--C---------CCCCceEEEEE---CCCcEEEec--CCCCC
Q 026381          154 LISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV--R---------VAEPSTVVDMT---GTYPKIIRQ--GKGPK  217 (239)
Q Consensus       154 L~~TSAN~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~--~---------~~~~STIVdl~---~~~~~ilR~--G~~~~  217 (239)
                      |++||||+||++ ++.+.+++.+.|.+ .+|+|||+|.  .         ......|+...   +++...+|.  .+++.
T Consensus       184 LvaTSAN~SGep-~~~~~ee~~~~L~~-~vD~iLd~G~~~~~~~Psr~i~~r~ddsV~~~~~~~~g~~~~~rr~~~Rg~~  261 (295)
T 3l7v_A          184 VYASSANPSGKG-NRGKVEGIGERIES-MVDLVIEADDYVASIQPDKTIETRYEQGVMVSMVDKDGKLIPQQGADSRSVE  261 (295)
T ss_dssp             CEEEECC------CTTCGGGSCHHHHH-HSSEEEECHHHHHHTCTTCCTTTSCCSCCEEECBCTTSCBCCCCCTTCCSCS
T ss_pred             eEECCcccCCCC-CCCCHHHHHHHhcC-cCcEEEeCCCccCCCCCCcCcccCCCCeeEEEEEcCCCcEeeeeccCccccc
Confidence            999999999875 67888888888874 8999999874  1         12233344332   567778886  99999


Q ss_pred             ccceeccc-cccccc
Q 026381          218 LYWMEEED-ANSTAI  231 (239)
Q Consensus       218 ~~~~~~~~-~~~~~~  231 (239)
                      |.++.+.. ++..||
T Consensus       262 P~p~~~~~~~~~~~~  276 (295)
T 3l7v_A          262 PCPVVIRKGLDIDKI  276 (295)
T ss_dssp             SCCEEEECCTTHHHH
T ss_pred             CceeeccccccHHHH
Confidence            99988864 344443

>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}

Probab=100.00  E-value=2.9e-34  Score=283.73  Aligned_cols=194  Identities=13%  Similarity=0.154  Sum_probs=173.2

Q ss_pred             hhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchHH
Q 026381           12 SWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI   91 (239)
Q Consensus        12 ~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~~   91 (239)
                      ...+++|+++|++|++|++||+|+|||+||++|++||+||++.|+|+ +|||+||++|++++.+|+. +.       +..
T Consensus       200 ~~~i~~a~~~l~~G~iva~kg~ggy~L~cda~n~~aV~~lr~~K~Rp-~kP~avm~~d~~~~~~~~~-~~-------~~e  270 (772)
T 4g9i_A          200 GDPLRKAAELIDKGYIVAIKGIGGIHLACDAANEEVVAELRRRTFRP-QKPFAIMAKDIETVKSFAY-VS-------PEE  270 (772)
T ss_dssp             THHHHHHHHHHTTSCCEEECCSSSBEEECCTTCHHHHHHHHHHTTCS-SSCCEEECSSHHHHHHHSC-CC-------HHH
T ss_pred             hHHHHHHHHHHHcCCEEEEecCCeeEEEEecCCHHHHHHHHHhhCCC-CCCcEEEeCCHHHHHHHhc-cC-------chh
Confidence            35899999999999999999999999999999999999999999998 7999999999999999996 32       356


Q ss_pred             HHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCC-cEEecccCCCCCCCCCCC
Q 026381           92 FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDA-PLISTSVKWLKDNEWMVD  170 (239)
Q Consensus        92 ~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~-PL~~TSAN~sg~~~~~~~  170 (239)
                      ++++...|+.++++..+....+|+.+         .++.++||||+|++|+++.|++.+|. ||++||||+||++ .+.+
T Consensus       271 ~~~L~s~~~Pivll~~~~~~~l~~~v---------ap~~~~~Gv~lP~~pl~~lL~~~~~~~~lv~tSaN~sg~P-~~~~  340 (772)
T 4g9i_A          271 EEELTSYRRPIITLRKKEPFPLPENL---------APGLHTIGVMLPYAGTHYILFHWSKTPVYVMTSANYPGMP-MVKD  340 (772)
T ss_dssp             HHHHSSTTCCEEEEECCSSCCSCTTS---------CSSCSEEEEECCCSTHHHHHHHSSSSCCCCCEESSCTTSC-CBCS
T ss_pred             hhhhccCCCCCEEEECCCCCCCChhH---------CCCCCeEEEEecCCHHHHHHHHhcCCCEEEECcCCCCCCC-CccC
Confidence            78888888778888887777788774         35678999999999999999999997 5799999999875 6889


Q ss_pred             HhHHHHHcCCCcccEEEeCCCC--CCCCceEEEEECCCcEEEecCCCCCccceeccc
Q 026381          171 PVVIADTYGPEGLDFVVDGGVR--VAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED  225 (239)
Q Consensus       171 ~~~~~~~~~~~~vd~ild~g~~--~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~~  225 (239)
                      .+++.+.+.. .+|++||+++.  .....+||++.++.+.+||.++|+.|.++.+..
T Consensus       341 ~~~a~~~L~~-~~D~~L~h~R~I~~~~DDSvv~~~~~~~~~lRr~RG~~P~~~~~~~  396 (772)
T 4g9i_A          341 NERAFEELKD-VADYFLLHNRKILNRADDSVIRFVDGKRAVIRRSRGFVPLPIEIPF  396 (772)
T ss_dssp             HHHHHHHHTT-TCSBEEEESSCCCSCCCCCEECCCSSSCCBSCCCTTSTTCCEECSS
T ss_pred             HHHHHHhhcC-cccEEEECCCCccCccCCceEEEECCeEEEEecCCCCCCCccccCC
Confidence            9999998885 89999999973  578889999999999999999999999998864

>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*

Probab=96.26  E-value=0.029  Score=53.70  Aligned_cols=151  Identities=15%  Similarity=0.126  Sum_probs=103.0

Q ss_pred             hHHHHHHHHHCCCeEEE-ecCceE--------EEEccCCChHHHHHHH-HHhCCCCCCCeEEEeCChHHHhhhhccCCCC
Q 026381           14 KLEPVVELLKEGAVGVV-PTDTLY--------AIVCDLKSHSAIERLR-RIKNVEPSKPLSILCRSLRDIDTYTTGFPRG   83 (239)
Q Consensus        14 ~l~~a~~~L~~Ggvii~-PTdTvY--------gL~~~~~n~~Av~ri~-~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~   83 (239)
                      ..+++++.|.+|+||.. -.-.=|        .|.++|.+.+..+||. ++|+|..-.||+=.|- .|.+.+|-+ .+  
T Consensus       398 ~~~~~A~~la~g~vvgw~qGr~EfGPRALG~RSILadP~~~~~~~~lN~~iK~RE~fRPfAP~vl-~e~a~~~f~-~~--  473 (576)
T 3ven_A          398 LEREVAALIASGKVVGWAQGRGEVGPRALGQRSLLGSAHSPTMRDHINLRVKDREWWRPFAPSML-RSVSDQVLE-VD--  473 (576)
T ss_dssp             HHHHHHHHHHTTCCEEEECSSCBCSSSCCSSEEEEEESSCSSHHHHHHHTTSCCCTTCCCCEEEE-HHHHHHHBS-SC--
T ss_pred             HHHHHHHHHhCCCEEEEEecCccccccccccceeecCCCChHHHHHHHHHhcCCCccCCcChhhh-HHHHHHHcC-CC--
Confidence            46789999999999964 333334        4889999999999999 7999999999986654 477777754 21  


Q ss_pred             CCCCchHHHHHHHhcCCCCe-EEEecc----CCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHH----cCCc-
Q 026381           84 DGQGHANIFRAVKHCLPGPY-TFILTA----SKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQK----MDAP-  153 (239)
Q Consensus        84 ~~~~~~~~~~l~~~~wPGpl-TlIl~~----~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~----~g~P-  153 (239)
                                     .|.|+ +++++.    ++.+|.-..-.|..       .-.-|.=-.+|...+||++    +|.| 
T Consensus       474 ---------------~~spyMl~~~~v~~~~r~~ipav~HvDgTa-------R~QtV~~~~np~~~~ll~~f~~~TG~pv  531 (576)
T 3ven_A          474 ---------------ADFPYMIMTTKVRAAYAERLPSVVHEDWST-------RPQTVTEASNPRYHRMLTELGDLVGDPV  531 (576)
T ss_dssp             ---------------SCCCSSCSCEEBCGGGTTTCTTTSCTTSEE-------CCEEECTTTCHHHHHHHHHHHHHHSSCE
T ss_pred             ---------------CCCCceeEeeecCHhHHhhCCcEEeccCCc-------cceEECCccCHHHHHHHHHHHHHhCCeE
Confidence                           13332 333332    35677653222321       1133444457877787755    6666 


Q ss_pred             EEecccCCCCCCCCCCCHhHHHHHcCCCcccEEEeCCC
Q 026381          154 LISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV  191 (239)
Q Consensus       154 L~~TSAN~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~  191 (239)
                      |+-||-|..|++ ...++.++.+.|....+|+.+=++.
T Consensus       532 llNTSfN~~GeP-iV~tp~dA~~~f~~~~lD~Lv~~~~  568 (576)
T 3ven_A          532 CLNTSFNDRGEP-IVSSPADALLTFSRLPIDALAVGPY  568 (576)
T ss_dssp             EEEEESSCTTSC-CCCSHHHHHHHHHHTTCSEEEETTE
T ss_pred             EEECCCCCCCCC-CCCCHHHHHHHHHhCCCCEEEECCE
Confidence            667999998774 6788999988886457888765553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1k7ja_	206	d.115.1.1 (A:) Hypothetical protein YciO {Escheric	2e-30
d1jcua_	208	d.115.1.1 (A:) Hypothetical protein MTH1692 {Archa	5e-21
d1hrua_	186	d.115.1.1 (A:) Hypothetical protein YrdC {Escheric	2e-18

>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli [TaxId: 562]} Length = 206

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein YciO
species: Escherichia coli [TaxId: 562]

 Score =  110 bits (275), Expect = 2e-30
 Identities = 64/220 (29%), Positives = 116/220 (52%), Gaps = 17/220 (7%)

Query: 2   YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 61
           +    P       +   VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ +    
Sbjct: 4   FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGH 63

Query: 62  PLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYG 121
             +++CR L ++ TY+              FR +K+  PG YTFIL  +KEVP++ ++  
Sbjct: 64  NFTLMCRDLSELSTYS--------FVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEK 115

Query: 122 TTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPE 181
             T        +G+R+P++ I QA+L+ +  P++STS+          DP  I D    +
Sbjct: 116 RKT--------IGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQ 167

Query: 182 GLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWM 221
            +D ++ GG    +P+TV+D+T   P ++R+G G    ++
Sbjct: 168 -VDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL 206

>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 208

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein MTH1692
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 85.4 bits (210), Expect = 5e-21
 Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 23/217 (10%)

Query: 1   MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
           +  +          LE  + +++ G + + PTDT+Y +  +     A+ RL R+K   P 
Sbjct: 2   LIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPH 61

Query: 61  KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 120
           KP+SI    + +I  ++        +   +    ++  LPGPYT +L  ++ +P      
Sbjct: 62  KPVSICVSCVDEIPRFS--------RPSGDAMELMERILPGPYTVVLERNELIPDVITGG 113

Query: 121 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGP 180
                       VG+R+P+D IC+ I  +   P+ +TS              ++ D    
Sbjct: 114 ---------SSRVGIRVPDDEICRRIAARF--PVTATSANISGKPPSPRLEEIVRDLD-- 160

Query: 181 EGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGP 216
             +D V+D G     EPSTV+D+T   P+++R+GKGP
Sbjct: 161 -AVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGKGP 196

>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein YrdC
species: Escherichia coli [TaxId: 562]

 Score = 78.1 bits (191), Expect = 2e-18
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 18/197 (9%)

Query: 15  LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
           +   +++L E  V   PT+ ++ + CD  S +A+ RL  +K     K L ++  +   + 
Sbjct: 8   IAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLK 67

Query: 75  TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 134
            Y       D Q        +    PGP TF+  A    P+                 + 
Sbjct: 68  PYIDDTMLTDVQ-----RETIFSRWPGPVTFVFPAPATTPRWLTGR---------FDSLA 113

Query: 135 VRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVA 194
           VR+ +  +  A+ Q    PL+STS   L           +   +G      V        
Sbjct: 114 VRVTDHPLVVALCQAYGKPLVSTSA-NLSGLPPCRTVDEVRAQFGAA-FPVVPGETGGRL 171

Query: 195 EPSTVVDMTGTYPKIIR 211
            PS + D      ++ R
Sbjct: 172 NPSEIRDALT--GELFR 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1k7ja_	206	Hypothetical protein YciO {Escherichia coli [TaxId	100.0
d1jcua_	208	Hypothetical protein MTH1692 {Archaeon Methanobact	100.0
d1hrua_	186	Hypothetical protein YrdC {Escherichia coli [TaxId	100.0

>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein YciO
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.3e-59  Score=393.12  Aligned_cols=203  Identities=32%  Similarity=0.616  Sum_probs=186.9

Q ss_pred             eEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCC
Q 026381            2 YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFP   81 (239)
Q Consensus         2 ~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p   81 (239)
                      |+++||+|||.+.+++|++.|++||||++||||+|||+|+++|++||+|||++|+|+.+|||+++++|++++.+|+. ++
T Consensus         4 ~~~~~~~~p~~~~i~~a~~~L~~G~vv~~PTdTvYgl~~da~~~~av~~i~~iK~R~~~kpl~vlv~~~~~~~~~~~-~~   82 (206)
T d1k7ja_           4 FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF-VD   82 (206)
T ss_dssp             EEECCSSSCCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBC-CC
T ss_pred             eEEeCCCCCCHHHHHHHHHHHHcCCEEEEECCceeEEEEeCCChHHHHHHHHhhccccccccccccCCHHHHHHHhh-hh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999986 43


Q ss_pred             CCCCCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCC
Q 026381           82 RGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKW  161 (239)
Q Consensus        82 ~~~~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~  161 (239)
                             +.+++++++|||||+|+|+++++..+..+.        .++.++||||||+|+++++|++++|.||++||||+
T Consensus        83 -------~~~~~l~~~~wPgplT~i~~~~~~~~~~~~--------~~~~~tv~iRip~~~~~~~Ll~~~~~Pl~sTSAN~  147 (206)
T d1k7ja_          83 -------NVAFRLMKNNTPGNYTFILKGTKEVPRRLL--------QEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLML  147 (206)
T ss_dssp             -------HHHHHHHHTSCSSSEEEEEEBCTTSCGGGS--------CTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBC
T ss_pred             -------hhhhhhhccccccceeeeecCCccccchhh--------ccccceeeeeecccchhHHHHHhhcCceeeecccc
Confidence                   357899999999999999999988876642        35678999999999999999999999999999999


Q ss_pred             CCCCCCCCCHhHHHHHcCCCcccEEEeCCCCCCCCceEEEEECCCcEEEecCCCCCccce
Q 026381          162 LKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWM  221 (239)
Q Consensus       162 sg~~~~~~~~~~~~~~~~~~~vd~ild~g~~~~~~STIVdl~~~~~~ilR~G~~~~~~~~  221 (239)
                      ||++.+..+.+++.+.|.+ .+|+++|+|...+++|||||+++++++|+|+|+++.+.||
T Consensus       148 sG~~~~~~~~~~i~~~~~~-~vd~iid~g~~~~~pSTIid~~~~~~~ilR~Ga~~~~~~l  206 (206)
T d1k7ja_         148 PGSEFTESDPEEIKDRLEK-QVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL  206 (206)
T ss_dssp             TTCSSBCCCHHHHHHHHTT-TCSEEEECCCCCSCCCEEEECGGGCCEEEECCSSCSGGGC
T ss_pred             cccccccCCHHHHHHHhCC-CceEEEeCCCcCCCCCeEEEEECCCeEEEecCCCCchhhC
Confidence            9976556678889898885 8999999998778999999999999999999999987775

>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein MTH1692
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=8.5e-56  Score=375.08  Aligned_cols=199  Identities=28%  Similarity=0.493  Sum_probs=183.1

Q ss_pred             CeEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccC
Q 026381            1 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGF   80 (239)
Q Consensus         1 ~~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~   80 (239)
                      |++++|++||+.+.+++|+++|++||||+|||||+|||+|+++|++|++|||++|+|+.+|||++++++.+++.+|+. +
T Consensus         2 ~i~~i~~~n~~~~~i~~a~~~L~~Ggivi~PTdtvYgl~c~a~~~~av~~i~~lK~R~~~kp~~vl~~~~~~~~~~~~-~   80 (208)
T d1jcua_           2 LIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSR-P   80 (208)
T ss_dssp             CSCCCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTTEE-C
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHHcCCEEEEEcCceeeeEEeCCCcHHHHHHHHhhccccccchheecchhhhhhhhhh-h
Confidence            678899999999999999999999999999999999999999999999999999999999999999999999999986 3


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccC
Q 026381           81 PRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVK  160 (239)
Q Consensus        81 p~~~~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN  160 (239)
                      +       +..++++++|||||+|+|+++++.+|+++.         ++.++||||+|+|+++++|++.+  ||++||||
T Consensus        81 ~-------~~~~~l~~~~~pgp~Tii~~~~~~~~~~~~---------~~~~~vgiRip~~~~~~~L~~~~--Pl~~TSAN  142 (208)
T d1jcua_          81 S-------GDAMELMERILPGPYTVVLERNELIPDVIT---------GGSSRVGIRVPDDEICRRIAARF--PVTATSAN  142 (208)
T ss_dssp             C-------HHHHHHHHHSCSSSEEEEEEECSCCCHHHH---------TTTTEEEEECCSCHHHHHHHHHS--CEEEEECC
T ss_pred             h-------HHHHHhhhcccccccceehhhhhhhhhhhc---------CCccceeeeccchHHHHHHhcCC--Cccccccc
Confidence            3       357899999999999999999999999863         46789999999999999999863  99999999


Q ss_pred             CCCCCCCCCCHhHHHHHcCCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecCCCCCccce
Q 026381          161 WLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYWM  221 (239)
Q Consensus       161 ~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G~~~~~~~~  221 (239)
                      +||++ ++.+..++.+.|.  .+|+|+|+|. ..+.+|||||+++++++|+|+|+++.+++|
T Consensus       143 ~sG~~-~~~~~~ei~~~~~--~vd~iid~g~~~~~~~STIid~~~~~~~IlR~G~i~~~~i~  201 (208)
T d1jcua_         143 ISGKP-PSPRLEEIVRDLD--AVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGKGPLDPVL  201 (208)
T ss_dssp             SSSCC-SCSCHHHHHHHSS--SSEECCSSCCCSCSCCCEEECCCSSSCCEEECCCSSCCCCC
T ss_pred             ccccc-cchhhHHHHHHhc--CccEEEECCcCCCCCCCEEEEeeCCceEEEEeCCCCHHHHH
Confidence            99886 5788899988874  6999999997 578999999999999999999999987776

>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein YrdC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-51  Score=340.59  Aligned_cols=186  Identities=20%  Similarity=0.288  Sum_probs=167.2

Q ss_pred             CCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCC
Q 026381            8 SGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQG   87 (239)
Q Consensus         8 ~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~   87 (239)
                      +|.+.+.+++|+++|++||||++||||+|||+|+++|++||+|||++|+|+.+|||+++++|++++..|+...+.     
T Consensus         1 ~n~~~d~i~~a~~~L~~G~iv~~PTdt~Ygl~~~~~~~~av~~i~~~K~R~~~kp~~vlv~~~~~~~~~~~~~~~-----   75 (186)
T d1hrua_           1 NNLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTML-----   75 (186)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTC-----
T ss_pred             CCCCHHHHHHHHHHHHcCCEEEEECCceeEEEEeCCChHHHHHHHHhhhhccccccceeeehhhhhhhhcccchh-----
Confidence            466788999999999999999999999999999999999999999999999999999999999999999863332     


Q ss_pred             chHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCC
Q 026381           88 HANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEW  167 (239)
Q Consensus        88 ~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~  167 (239)
                      ....+++++++||||+|+|+++++.+|+++.         .+.++||||+|+|+++++|++++|.||++||||+||++ +
T Consensus        76 ~~~~~~~~~~~~Pgplt~i~~~~~~~~~~~~---------~~~~tigvRiP~~~~~~~L~~~~g~Pl~~TSAN~sG~~-~  145 (186)
T d1hrua_          76 TDVQRETIFSRWPGPVTFVFPAPATTPRWLT---------GRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLP-P  145 (186)
T ss_dssp             CHHHHHHHHTTCSSSEEEEEECCTTSCHHHH---------TTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSC-C
T ss_pred             HHHHHHHHHhcCCCcceeccccccCCcchhh---------hccceeeeeechhHHHHHHHHHhCCcEEecccccCCCC-C
Confidence            3456789999999999999999999998853         56789999999999999999999999999999999985 6


Q ss_pred             CCCHhHHHHHcCCCcccEEEeCCCCCCCCceEEEEECCCcEEEe
Q 026381          168 MVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIR  211 (239)
Q Consensus       168 ~~~~~~~~~~~~~~~vd~ild~g~~~~~~STIVdl~~~~~~ilR  211 (239)
                      +.+.+++.+.|++ .+|+++|++...+.||||||++++  +|+|
T Consensus       146 ~~~~~~i~~~~~~-~vd~i~~~~~~~~~~STIid~~~~--~iiR  186 (186)
T d1hrua_         146 CRTVDEVRAQFGA-AFPVVPGETGGRLNPSEIRDALTG--ELFR  186 (186)
T ss_dssp             CCSHHHHHHHHCT-TSCBCCCCCCSSCCCCEEEETTTS--SBCC
T ss_pred             CCcHHHHHHHhCC-CcEEEECCCCCCCCCcEEEECcCC--EEeC
Confidence            7899999999985 789888877777889999999876  4676