Citrus Sinensis ID: 026413

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVMYFICVLHMMFAVIWSITPACVTSCRQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHccccccccccHHHHHHHHHHccccccccEEEEEEccccccccEEEEEEEEcccccccccccccccccccEEEEEEEEcccEEEEEEEcccccEEEEEEEEcccccEEEEEEEEccccccEEEEEEEEEEcccEEEEEEEEcccEEEEEEEEEEcccEEEEEEEEEEccccccEEEEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHcccccccEEEEEcccccccEEEEEEEEEcccccccccccEEEEcccccEEEEEEEcccEEEEEEEcccccEEEEEEEEccccEEEEEEEEEccccccEEEEEEEcccccccEEEEEEcccHHEHHHHHHHcccccEEcEEEEEccccccccEEEEEEEcccccEEEEEEEEccccEEEEEccHHHHHHccc
Coil and Loop (DISEMBL)
maglvppgttvkpdastakpkeeekvdymnlpcpipyeeIHREALMSLKPelfeglrfdftkglnqkfslshsvimgpteipsqstetikiptahyefganyidpklMLIGRVLtdgrlnarvkcdlsdnlslkanaqltnephmshgminfdykgkdyrtqfqfgngalfgasyiqnvsphlslggevfwagqhrksGIGYAARYENDKMVMYFICVLHMMFAVIWSItpacvtscrq
Flexible Loop (DISEMBL)
maglvppgttvkpdastakpkeeekvdymnlPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANaqltnephmshGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVMYFICVLHMMFAVIWSITPACVTSCRQ
Low Complexity Region (SEG)
MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVMYFICVLHMMFAVIWSITPACVTSCRQ
Disordered region (IsUnstruct)
**************************DYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEI****TETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLT***HMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVMYFICVLHMMFAVIWSITPACVTS***
Disordered Region (DISOPRED)
****VP****************************IPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQL***PHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVMYFICVLHMMFAVIWSITPACV*S***
Disordered Region (DISEMBL)
***********************EKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVMYFICVLHMMFAVIWSITPACVTSCRQ
Disordered Region (DISPRO)
********************KEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVMYFICVLHMMFAVIWSITPACVTSCRQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVMYFICVLHMMFAVIWSITPACVTSCRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q9LHE5	309	Mitochondrial import rece	yes	no	0.874	0.676	0.727	5e-89
Q9SX55	310	Probable mitochondrial im	no	no	0.874	0.674	0.640	1e-77
Q6P825	336	Mitochondrial import rece	yes	no	0.774	0.550	0.276	7e-16
Q7ZTM6	336	Mitochondrial import rece	N/A	no	0.774	0.550	0.285	2e-15
Q9QYA2	361	Mitochondrial import rece	yes	no	0.635	0.421	0.295	8e-14
Q75Q40	361	Mitochondrial import rece	yes	no	0.635	0.421	0.295	1e-13
O96008	361	Mitochondrial import rece	yes	no	0.635	0.421	0.284	6e-12
Q1LZB5	361	Mitochondrial import rece	yes	no	0.635	0.421	0.284	6e-12
O13656	344	Probable mitochondrial im	yes	no	0.707	0.491	0.297	8e-11
Q9U4L6	344	Mitochondrial import rece	yes	no	0.615	0.427	0.291	5e-10

>sp|Q9LHE5|TO401_ARATH Mitochondrial import receptor subunit TOM40-1 OS=Arabidopsis thaliana GN=TOM40-1 PE=1 SV=3

 Score =  327 bits (838), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 155/213 (72%), Positives = 175/213 (82%), Gaps = 4/213 (1%)

Query: 1   MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDF 60
           MA L+PP T  + DA T   K +EKVDY NLP P+PYEE+HREALMSLK + FEGLRFDF
Sbjct: 1   MADLLPPLTAAQVDAKT---KVDEKVDYSNLPSPVPYEELHREALMSLKSDNFEGLRFDF 57

Query: 61  TKGLNQKFSLSHSVIMGPTEIPSQSTET-IKIPTAHYEFGANYIDPKLMLIGRVLTDGRL 119
           T+ LNQKFSLSHSV+MGPTE+P+QS ET IKIPTAHYEFGANY DPKL+LIGRV+TDGRL
Sbjct: 58  TRALNQKFSLSHSVMMGPTEVPAQSPETTIKIPTAHYEFGANYYDPKLLLIGRVMTDGRL 117

Query: 120 NARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNV 179
           NAR+K DL+D L +KANA +TNE HMS  M NFDY G DYR Q Q G  AL GA+YIQ+V
Sbjct: 118 NARLKADLTDKLVVKANALITNEEHMSQAMFNFDYMGSDYRAQLQLGQSALIGATYIQSV 177

Query: 180 SPHLSLGGEVFWAGQHRKSGIGYAARYENDKMV 212
           + HLSLGGE+FWAG  RKSGIGYAARYE DKMV
Sbjct: 178 TNHLSLGGEIFWAGVPRKSGIGYAARYETDKMV 210

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore. Directly involved in the pore formation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX55|TO402_ARATH Probable mitochondrial import receptor subunit TOM40-2 OS=Arabidopsis thaliana GN=TOM40-2 PE=2 SV=3

 Score =  289 bits (739), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 137/214 (64%), Positives = 164/214 (76%), Gaps = 5/214 (2%)

Query: 1   MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDF 60
           M G  PP  T + DA T   K +EKVDY NLPCP+ YEE++REA M+LKPELFEG R D+
Sbjct: 1   MEGFSPPINTAQVDAKT---KLDEKVDYSNLPCPVLYEELNREATMALKPELFEGFRLDY 57

Query: 61  TKGLNQKFSLSHSVIMGPTEIP--SQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGR 118
            K LNQKF LSHS++MGPTE+P  + S+E IKIPTA+Y+FGA +IDPKL LIGR+ TDGR
Sbjct: 58  NKSLNQKFFLSHSILMGPTEVPNPTPSSEIIKIPTANYDFGAGFIDPKLYLIGRITTDGR 117

Query: 119 LNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQN 178
           LNAR K DL+DN S+KANA LT+E   S G +  DYKG DYRTQ Q GN +++ A+YIQ+
Sbjct: 118 LNARAKFDLTDNFSVKANALLTDEEDKSQGHLVIDYKGSDYRTQLQLGNNSVYAANYIQH 177

Query: 179 VSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMV 212
           V+PHLSLGGE FW GQ   SG+GYAARYE DK V
Sbjct: 178 VTPHLSLGGEAFWLGQQLMSGVGYAARYETDKTV 211

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore. Directly involved in the pore formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6P825|TOM40_XENTR Mitochondrial import receptor subunit TOM40 homolog OS=Xenopus tropicalis GN=tomm40 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 36/221 (16%)

Query: 5   VPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGL 64
           VPPG T+ P A      ++++     LP P  +EE HR+    L P   EG++    KGL
Sbjct: 26  VPPGFTMPPVAGLTPTPDKKETQEDRLPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGL 84

Query: 65  NQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLM--------LIGRVLTD 116
           +  F ++H+V +              I  ++Y FGA Y+  K +        L+G +   
Sbjct: 85  SNYFQVNHTVSLS------------MIGESNYHFGATYVGTKQLGPAEAFPVLVGDLDNS 132

Query: 117 GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN------GAL 170
           G LNA++   ++ N+  K   Q T +    +  ++ +Y+G+D+      GN        +
Sbjct: 133 GSLNAQIIHQVTSNVRSKIALQ-TQQSKFVNWQLDTEYRGEDFTAAVTLGNPDILVGSGI 191

Query: 171 FGASYIQNVSPHLSLGGEVFWAGQHRKSG-----IGYAARY 206
             A Y+Q+++P L+LGGE+ +   HR+ G     +  A RY
Sbjct: 192 LVAHYLQSITPSLALGGELVY---HRRPGEEGTVMSLAGRY 229

Channel-forming protein essential for import of protein precursors into mitochondria.

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZTM6|TOM40_XENLA Mitochondrial import receptor subunit TOM40 homolog OS=Xenopus laevis GN=tomm40 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 36/221 (16%)

Query: 5   VPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGL 64
           VPPG T+ P A      ++++     LP P  +EE HR+    L P   EG++    KGL
Sbjct: 26  VPPGFTMPPVAGLTPTPDKKEPQEERLPNPGTFEECHRKC-KELFPIQMEGVKLIVNKGL 84

Query: 65  NQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLM--------LIGRVLTD 116
           +  F ++H++        S ST    I  ++Y FGA Y+  K +        L+G     
Sbjct: 85  SNYFQVNHTI--------SLST----IGESNYHFGATYVGTKQLGPAEAFPVLVGDFDNS 132

Query: 117 GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN------GAL 170
           G LN ++   +++N+  K   Q T +    +  ++ +Y+G+DY      GN        +
Sbjct: 133 GSLNGQIIHQVTNNIRSKIALQ-TQQSKFVNWQLDTEYRGEDYTASVTLGNPDILVGSGI 191

Query: 171 FGASYIQNVSPHLSLGGEVFWAGQHRKSG-----IGYAARY 206
             A Y+Q+++P L+LGGE+ +   HR+ G     +  A RY
Sbjct: 192 LVAHYLQSITPSLALGGELVY---HRRPGEEGTVMSLAGRY 229

Channel-forming protein essential for import of protein precursors into mitochondria.

Xenopus laevis (taxid: 8355)

>sp|Q9QYA2|TOM40_MOUSE Mitochondrial import receptor subunit TOM40 homolog OS=Mus musculus GN=Tomm40 PE=1 SV=3

 Score = 77.4 bits (189), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 31/183 (16%)

Query: 31  LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
           LP P  +EE HR+    L P   EG++    KGL+ +F ++H+V +G             
Sbjct: 77  LPNPGTFEECHRKC-KELFPVQMEGVKLTVNKGLSNRFQVTHTVALG------------T 123

Query: 91  IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
           I  ++Y FG  Y+  K +        L+G +   G LNA+V   LS  L  K   Q T +
Sbjct: 124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLSPGLRSKMAIQ-TQQ 182

Query: 143 PHMSHGMINFDYKGKDYRTQFQFGN------GALFGASYIQNVSPHLSLGGEVFWAGQHR 196
               +  ++ +Y+G D+      GN        +  A Y+Q+++P L+LGGE+ +   HR
Sbjct: 183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query: 197 KSG 199
           + G
Sbjct: 240 RPG 242

Channel-forming protein essential for import of protein precursors into mitochondria.

Mus musculus (taxid: 10090)

>sp|Q75Q40|TOM40_RAT Mitochondrial import receptor subunit TOM40 homolog OS=Rattus norvegicus GN=Tomm40 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 31/183 (16%)

Query: 31  LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
           LP P  +EE HR+    L P   EG++    KGL+ +F ++H+V +G             
Sbjct: 77  LPNPGTFEECHRKC-KELFPVQMEGVKLTVNKGLSNRFQVTHTVALG------------T 123

Query: 91  IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
           I  ++Y FG  Y+  K +        L+G +   G LNA+V   LS  L  K   Q T +
Sbjct: 124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLSPGLRSKMAIQ-TQQ 182

Query: 143 PHMSHGMINFDYKGKDYRTQFQFGN------GALFGASYIQNVSPHLSLGGEVFWAGQHR 196
               +  ++ +Y+G D+      GN        +  A Y+Q+++P L+LGGE+ +   HR
Sbjct: 183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query: 197 KSG 199
           + G
Sbjct: 240 RPG 242

Channel-forming protein essential for import of protein precursors into mitochondria.

Rattus norvegicus (taxid: 10116)

>sp|O96008|TOM40_HUMAN Mitochondrial import receptor subunit TOM40 homolog OS=Homo sapiens GN=TOMM40 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 31/183 (16%)

Query: 31  LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
           LP P  +EE HR+    L P   EG++    KGL+  F ++H+V +              
Sbjct: 77  LPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGLSNHFQVNHTVALS------------T 123

Query: 91  IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
           I  ++Y FG  Y+  K +        L+G +   G LNA+V   L   L  K   Q T +
Sbjct: 124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQ-TQQ 182

Query: 143 PHMSHGMINFDYKGKDYRTQFQFGN------GALFGASYIQNVSPHLSLGGEVFWAGQHR 196
               +  ++ +Y+G D+      GN        +  A Y+Q+++P L+LGGE+ +   HR
Sbjct: 183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query: 197 KSG 199
           + G
Sbjct: 240 RPG 242

Channel-forming protein essential for import of protein precursors into mitochondria.

Homo sapiens (taxid: 9606)

>sp|Q1LZB5|TOM40_BOVIN Mitochondrial import receptor subunit TOM40 homolog OS=Bos taurus GN=TOMM40 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 31/183 (16%)

Query: 31  LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
           LP P  +EE HR+    L P   EG++    KGL+  F ++H+V +              
Sbjct: 77  LPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGLSNHFQVNHTVALS------------T 123

Query: 91  IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
           I  ++Y FG  Y+  K +        L+G +   G LNA+V   L   L  K   Q T +
Sbjct: 124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQ-TQQ 182

Query: 143 PHMSHGMINFDYKGKDYRTQFQFGN------GALFGASYIQNVSPHLSLGGEVFWAGQHR 196
               +  ++ +Y+G D+      GN        +  A Y+Q+++P L+LGGE+ +   HR
Sbjct: 183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query: 197 KSG 199
           + G
Sbjct: 240 RPG 242

Channel-forming protein essential for import of protein precursors into mitochondria.

Bos taurus (taxid: 9913)

>sp|O13656|TOM40_SCHPO Probable mitochondrial import receptor subunit tom40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tom40 PE=3 SV=3

 Score = 67.4 bits (163), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 87/205 (42%), Gaps = 36/205 (17%)

Query: 24  EKVDY----MNLPCPIPYEEIHREAL--MSLKPELFEGLRFDFTKGLNQK--FSLSHSVI 75
           EK+D     +NL  P   E + +E    + L    F G+R D TKG      F++SH+  
Sbjct: 16  EKIDSYKSSLNLINPGTCENLSKEVSKDILLSNYAFTGVRADVTKGFCTSPWFTVSHAFA 75

Query: 76  MGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKA 135
           +G   +P             Y F   +    L L G V  DG + A + C  + N+  K 
Sbjct: 76  LGSQVLPP------------YSFSTMFGGEPLFLRGSVDNDGAVQAMLNCTWNSNVLSKV 123

Query: 136 NAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN-------GALFGASYIQNVSPHLSLGGE 188
             QL+N    +   I  D+KGKD+   F+  N         ++  S +Q+V+P LSLG E
Sbjct: 124 QMQLSNGAVPNMCQIEHDHKGKDFSFSFKAMNPWYEEKLTGIYIISLLQSVTPKLSLGVE 183

Query: 189 VFWAGQHRKSGIG-------YAARY 206
             W  Q   S IG       Y  RY
Sbjct: 184 ALW--QKPSSSIGPEEATLSYMTRY 206

Channel-forming protein essential for import of protein precursors into mitochondria.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9U4L6|TO401_DROME Mitochondrial import receptor subunit TOM40 homolog 1 OS=Drosophila melanogaster GN=Tom40 PE=2 SV=2

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 28/175 (16%)

Query: 31  LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
           L  P   EE+H++    ++   FEG +    KGL+  F +SH++ M    +PS       
Sbjct: 57  LENPGTVEELHKKC-KDIQAITFEGAKIMLNKGLSNHFQVSHTINMSNV-VPS------- 107

Query: 91  IPTAHYEFGANYIDPKL--------MLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
                Y FGA Y+  K         +L+G +   G LNA V    S  L  K  +Q+  E
Sbjct: 108 ----GYRFGATYVGTKEFSPTEAFPVLLGDIDPAGNLNANVIHQFSARLRCKFASQI-QE 162

Query: 143 PHMSHGMINFDYKGKDYRTQFQFGNGALFGAS------YIQNVSPHLSLGGEVFW 191
             +    +  DY+G DY       N ++F  S      Y+Q+V+P L+LG E+ +
Sbjct: 163 SKVVASQLTTDYRGSDYTLSLTVANPSIFTNSGVVVGQYLQSVTPALALGSELAY 217

Channel-forming protein essential for import of protein precursors into mitochondria.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
255544135	308	mitochondrial import receptor subunit to	0.874	0.678	0.839	1e-103
449502259	317	PREDICTED: mitochondrial import receptor	0.811	0.611	0.891	1e-102
449468748	317	PREDICTED: mitochondrial import receptor	0.811	0.611	0.871	1e-100
225429234	309	PREDICTED: mitochondrial import receptor	0.794	0.614	0.884	1e-100
147797613	309	hypothetical protein VITISV_027855 [Viti	0.794	0.614	0.884	1e-100
224127130	316	predicted protein [Populus trichocarpa]	0.887	0.670	0.778	1e-100
224095236	300	predicted protein [Populus trichocarpa]	0.828	0.66	0.834	2e-97
356524630	310	PREDICTED: mitochondrial import receptor	0.786	0.606	0.841	7e-94
240846170	308	Rsdv1 resistance like protein [Glycine m	0.794	0.616	0.832	8e-94
388522849	303	unknown [Lotus japonicus]	0.832	0.656	0.765	5e-93

>gi|255544135|ref|XP_002513130.1| mitochondrial import receptor subunit tom40, putative [Ricinus communis] gi|223548141|gb|EEF49633.1| mitochondrial import receptor subunit tom40, putative [Ricinus communis]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/212 (83%), Positives = 191/212 (90%), Gaps = 3/212 (1%)

Query: 1   MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDF 60
           MAG+VPP TT    +S    +   KVDYM+LPCPIPYEE+HREALMSLKPELFEG+RFDF
Sbjct: 1   MAGIVPPPTTA---SSKTINEVHSKVDYMDLPCPIPYEELHREALMSLKPELFEGMRFDF 57

Query: 61  TKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLN 120
           TKGLNQKFSLSHSV MGP E+PSQS+ETIKIPTAHYEFGANYIDPKLML GRVLTDGRLN
Sbjct: 58  TKGLNQKFSLSHSVFMGPMELPSQSSETIKIPTAHYEFGANYIDPKLMLFGRVLTDGRLN 117

Query: 121 ARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVS 180
           ARVKCDL+DNL+LKANAQLTNEPHMSH M NFDYKG DYRTQ Q GNGALFGASYIQ+V+
Sbjct: 118 ARVKCDLTDNLTLKANAQLTNEPHMSHAMFNFDYKGNDYRTQLQLGNGALFGASYIQSVT 177

Query: 181 PHLSLGGEVFWAGQHRKSGIGYAARYENDKMV 212
           PHLSLGGEVFWAGQHRKSG+GYAARYE DKMV
Sbjct: 178 PHLSLGGEVFWAGQHRKSGVGYAARYETDKMV 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502259|ref|XP_004161591.1| PREDICTED: mitochondrial import receptor subunit TOM40 homolog 1-like [Cucumis sativus]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/194 (89%), Positives = 184/194 (94%)

Query: 19  KPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGP 78
           K  E+EKVDY+NLPCPIPYEEIHREA MSLKPELFEG+RFDFTKGLNQKFSLSHSV MGP
Sbjct: 24  KKTEDEKVDYLNLPCPIPYEEIHREAFMSLKPELFEGMRFDFTKGLNQKFSLSHSVFMGP 83

Query: 79  TEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQ 138
           TEIP+QS ETIKIPTA YEFGAN+IDPKLML GR+LTDGRLNARVKCDLSDNL+LKANAQ
Sbjct: 84  TEIPNQSAETIKIPTATYEFGANFIDPKLMLFGRILTDGRLNARVKCDLSDNLTLKANAQ 143

Query: 139 LTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKS 198
           LTNEPHMSHGM+NFDYKG+D+RTQFQ GNGALFGASYIQ+VSPHLSLGGEVFWAGQHRKS
Sbjct: 144 LTNEPHMSHGMVNFDYKGRDFRTQFQLGNGALFGASYIQSVSPHLSLGGEVFWAGQHRKS 203

Query: 199 GIGYAARYENDKMV 212
           GIGYAARY  DKMV
Sbjct: 204 GIGYAARYNTDKMV 217

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468748|ref|XP_004152083.1| PREDICTED: mitochondrial import receptor subunit TOM40 homolog 1-like [Cucumis sativus]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/194 (87%), Positives = 182/194 (93%)

Query: 19  KPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGP 78
           K  E+EKVDY+NLPCPIPYEEIHREA  +LKPELFEG+RFDFTKGLNQKFSLSH  +MGP
Sbjct: 24  KKTEDEKVDYLNLPCPIPYEEIHREAFSNLKPELFEGMRFDFTKGLNQKFSLSHQCVMGP 83

Query: 79  TEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQ 138
           TEIP+QS ETIKIPTA YEFGAN+IDPKLML GR+LTDGRLNARVKCDLSDNL+LKANAQ
Sbjct: 84  TEIPNQSAETIKIPTATYEFGANFIDPKLMLFGRILTDGRLNARVKCDLSDNLTLKANAQ 143

Query: 139 LTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKS 198
           LTNEPHMSHGM+NFDYKG+D+RTQFQ GNGALFGASYIQ+VSPHLSLGGEVFWAGQHRKS
Sbjct: 144 LTNEPHMSHGMVNFDYKGRDFRTQFQLGNGALFGASYIQSVSPHLSLGGEVFWAGQHRKS 203

Query: 199 GIGYAARYENDKMV 212
           GIGYAARY  DKMV
Sbjct: 204 GIGYAARYNTDKMV 217

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429234|ref|XP_002264051.1| PREDICTED: mitochondrial import receptor subunit TOM40 homolog 1 [Vitis vinifera] gi|296088087|emb|CBI35446.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 168/190 (88%), Positives = 183/190 (96%)

Query: 23  EEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIP 82
           +EKVDY++LPCPIPYEEIHREALMSLKPELFEG+RFDFTKGLNQKFSLSHSV MGPTEIP
Sbjct: 20  DEKVDYLDLPCPIPYEEIHREALMSLKPELFEGMRFDFTKGLNQKFSLSHSVFMGPTEIP 79

Query: 83  SQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
           SQS+ETIKIPTAHYEFGAN+IDPKLML GR+LTDGRLNARVKCDL++NL+LKANAQLT+E
Sbjct: 80  SQSSETIKIPTAHYEFGANFIDPKLMLFGRILTDGRLNARVKCDLTENLTLKANAQLTSE 139

Query: 143 PHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGY 202
           PHMSHGM+NFDYKG DYRTQ Q GNGALFGASYIQ+V+P+LSLGGEVFWAGQHRKSGIGY
Sbjct: 140 PHMSHGMVNFDYKGGDYRTQLQLGNGALFGASYIQSVTPYLSLGGEVFWAGQHRKSGIGY 199

Query: 203 AARYENDKMV 212
           AARY  DKMV
Sbjct: 200 AARYNTDKMV 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797613|emb|CAN64867.1| hypothetical protein VITISV_027855 [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 168/190 (88%), Positives = 183/190 (96%)

Query: 23  EEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIP 82
           +EKVDY++LPCPIPYEEIHREALMSLKPELFEG+RFDFTKGLNQKFSLSHSV MGPTEIP
Sbjct: 20  DEKVDYLDLPCPIPYEEIHREALMSLKPELFEGMRFDFTKGLNQKFSLSHSVFMGPTEIP 79

Query: 83  SQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
           SQS+ETIKIPTAHYEFGAN+IDPKLML GR+LTDGRLNARVKCDL++NL+LKANAQLT+E
Sbjct: 80  SQSSETIKIPTAHYEFGANFIDPKLMLFGRILTDGRLNARVKCDLTENLTLKANAQLTSE 139

Query: 143 PHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGY 202
           PHMSHGM+NFDYKG DYRTQ Q GNGALFGASYIQ+V+P+LSLGGEVFWAGQHRKSGIGY
Sbjct: 140 PHMSHGMVNFDYKGGDYRTQLQLGNGALFGASYIQSVTPYLSLGGEVFWAGQHRKSGIGY 199

Query: 203 AARYENDKMV 212
           AARY  DKMV
Sbjct: 200 AARYNTDKMV 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127130|ref|XP_002319995.1| predicted protein [Populus trichocarpa] gi|222860768|gb|EEE98310.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/217 (77%), Positives = 193/217 (88%), Gaps = 5/217 (2%)

Query: 1   MAGLVPPGTTVKPDASTAKPKEE-----EKVDYMNLPCPIPYEEIHREALMSLKPELFEG 55
           MAG VP GTT   + +T++  ++     +KVDY++LPCPIPYEE+HREALMSLKPE FEG
Sbjct: 1   MAGFVPQGTTFLGNEATSEAAKKINEVHKKVDYLSLPCPIPYEELHREALMSLKPEYFEG 60

Query: 56  LRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLT 115
           +RFDFTKGLNQKFSLSHSV+MGP EIPSQS+E IKIPTAHYEFGAN+ID K MLIGRVLT
Sbjct: 61  MRFDFTKGLNQKFSLSHSVMMGPMEIPSQSSEAIKIPTAHYEFGANFIDQKTMLIGRVLT 120

Query: 116 DGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASY 175
           DGR+NARVKCDL+D+L+LKANAQLTNEPHMSH M+NFDYKGKDYR+Q Q GNGALFGASY
Sbjct: 121 DGRVNARVKCDLTDDLALKANAQLTNEPHMSHVMLNFDYKGKDYRSQLQLGNGALFGASY 180

Query: 176 IQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMV 212
           IQ+V+PH+SLG EVFWAGQHRKSG+GYA RYE DKMV
Sbjct: 181 IQSVTPHMSLGAEVFWAGQHRKSGVGYAGRYETDKMV 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095236|ref|XP_002310364.1| predicted protein [Populus trichocarpa] gi|222853267|gb|EEE90814.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 166/199 (83%), Positives = 181/199 (90%), Gaps = 1/199 (0%)

Query: 15  ASTAKPKEEEK-VDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHS 73
           A+  K  E  K VDYMNLPCPIPYEE+HREALMSLKPE FEG+RFDFTKGLNQKFSLSHS
Sbjct: 3   AAAKKVNEVHKNVDYMNLPCPIPYEELHREALMSLKPEYFEGMRFDFTKGLNQKFSLSHS 62

Query: 74  VIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSL 133
           V+MGP EIPSQS+E IKIPTAHYEFGAN+ID + MLIGRVLTDGRLNARVKCDL+D+L+L
Sbjct: 63  VMMGPMEIPSQSSEAIKIPTAHYEFGANFIDQRTMLIGRVLTDGRLNARVKCDLTDDLAL 122

Query: 134 KANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAG 193
           KANAQLTNEPHMSH M+NFDYKGKDYR+Q Q GNGALFGASYIQ+V+PHLSLG EVFWAG
Sbjct: 123 KANAQLTNEPHMSHVMLNFDYKGKDYRSQLQLGNGALFGASYIQSVTPHLSLGAEVFWAG 182

Query: 194 QHRKSGIGYAARYENDKMV 212
           QHRKSG+GYA RYE DKMV
Sbjct: 183 QHRKSGVGYAGRYETDKMV 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524630|ref|XP_003530931.1| PREDICTED: mitochondrial import receptor subunit TOM40 homolog 1-like [Glycine max]

 Score =  349 bits (895), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 159/189 (84%), Positives = 177/189 (93%), Gaps = 1/189 (0%)

Query: 25  KVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQ 84
           KVDY+NLPCPIP+EE+HREA+MSLKP+LFEG+RFDFTK LNQKFSL+HSV+MGPTE+PSQ
Sbjct: 22  KVDYLNLPCPIPFEELHREAMMSLKPDLFEGMRFDFTKMLNQKFSLNHSVLMGPTEVPSQ 81

Query: 85  STETIKIPTAHYEFGANYID-PKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEP 143
           STETIKIPTAHYEFG+ +ID P+L+L GR+LTDGRLNARVKCDLS+NL+ KANAQLTNEP
Sbjct: 82  STETIKIPTAHYEFGSTFIDHPRLLLWGRILTDGRLNARVKCDLSENLTFKANAQLTNEP 141

Query: 144 HMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYA 203
           HMSH MINFDYKGKDYRTQFQ GNGAL GASYIQ+V+ HLSLGGEVFWAGQHRKSGIGYA
Sbjct: 142 HMSHAMINFDYKGKDYRTQFQLGNGALLGASYIQSVTQHLSLGGEVFWAGQHRKSGIGYA 201

Query: 204 ARYENDKMV 212
           ARY  DK V
Sbjct: 202 ARYNTDKSV 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240846170|dbj|BAH79623.1| Rsdv1 resistance like protein [Glycine max]

 Score =  348 bits (894), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 159/191 (83%), Positives = 178/191 (93%), Gaps = 1/191 (0%)

Query: 23  EEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIP 82
           + KVDY+NLPCPIP+EE+HREA+MSLKP+LFEG+RFDFTK LNQKFSL+HSV+MGPTE+P
Sbjct: 18  DTKVDYLNLPCPIPFEELHREAMMSLKPDLFEGMRFDFTKMLNQKFSLNHSVLMGPTEVP 77

Query: 83  SQSTETIKIPTAHYEFGANYID-PKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTN 141
           SQSTETIKIPTAHYEFG+ +ID P+L+L GR+LTDGRLNARVKCDLS+NL+ KANAQLTN
Sbjct: 78  SQSTETIKIPTAHYEFGSTFIDHPRLLLWGRILTDGRLNARVKCDLSENLTFKANAQLTN 137

Query: 142 EPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIG 201
           EPHMSH MINFDYKGKDYRTQFQ GNGAL GASYIQ+V+ HLSLGGEVFWAGQHRKSGIG
Sbjct: 138 EPHMSHAMINFDYKGKDYRTQFQLGNGALLGASYIQSVTQHLSLGGEVFWAGQHRKSGIG 197

Query: 202 YAARYENDKMV 212
           YAARY  DK V
Sbjct: 198 YAARYNTDKSV 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522849|gb|AFK49486.1| unknown [Lotus japonicus]

 Score =  346 bits (887), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 160/209 (76%), Positives = 184/209 (88%), Gaps = 10/209 (4%)

Query: 5   VPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGL 64
           VPP T  KPD         EK DY NLPCPIP+EE+HREA+MSLKP+LFEG+RFDFTK L
Sbjct: 4   VPPPTATKPD---------EKTDYFNLPCPIPFEELHREAMMSLKPDLFEGMRFDFTKML 54

Query: 65  NQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYID-PKLMLIGRVLTDGRLNARV 123
           NQ+FSL+HSV+MGPTEIPSQSTETIKIPTAHYEFG+ +ID PKL+L GRV+TDGRLNARV
Sbjct: 55  NQEFSLNHSVLMGPTEIPSQSTETIKIPTAHYEFGSTFIDHPKLLLWGRVMTDGRLNARV 114

Query: 124 KCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHL 183
           KCDLS+N++ KANAQL+NEPHMSHGM+NFDYKG DYR+QFQFGNGAL GASYIQ+V+ +L
Sbjct: 115 KCDLSENVTFKANAQLSNEPHMSHGMMNFDYKGSDYRSQFQFGNGALLGASYIQSVTRNL 174

Query: 184 SLGGEVFWAGQHRKSGIGYAARYENDKMV 212
           SLGGEVFWAGQHRKSG+G+A RY  D+MV
Sbjct: 175 SLGGEVFWAGQHRKSGVGFATRYNTDQMV 203

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2095355	309	TOM40 "translocase of the oute	0.874	0.676	0.727	3.7e-80
TAIR|locus:2011887	310	AT1G50400 [Arabidopsis thalian	0.874	0.674	0.640	6.1e-71
UNIPROTKB|Q7ZTM6	336	tomm40 "Mitochondrial import r	0.744	0.529	0.296	4.1e-16
UNIPROTKB|Q6P825	336	tomm40 "Mitochondrial import r	0.744	0.529	0.287	7e-16
ZFIN|ZDB-GENE-040426-2319	338	tomm40l "translocase of outer	0.794	0.562	0.285	3.7e-14
MGI|MGI:1858259	361	Tomm40 "translocase of outer m	0.635	0.421	0.306	2.8e-13
RGD|1303022	361	Tomm40 "translocase of outer m	0.635	0.421	0.306	2.8e-13
UNIPROTKB|F1RM44	307	F1RM44 "Uncharacterized protei	0.640	0.498	0.304	1.9e-11
UNIPROTKB|Q1LZB5	361	TOMM40 "Mitochondrial import r	0.635	0.421	0.306	5.1e-11
UNIPROTKB|O96008	361	TOMM40 "Mitochondrial import r	0.635	0.421	0.306	5.1e-11

TAIR|locus:2095355 TOM40 "translocase of the outer mitochondrial membrane 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 155/213 (72%), Positives = 175/213 (82%)

Query:     1 MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDF 60
             MA L+PP T  + DA T   K +EKVDY NLP P+PYEE+HREALMSLK + FEGLRFDF
Sbjct:     1 MADLLPPLTAAQVDAKT---KVDEKVDYSNLPSPVPYEELHREALMSLKSDNFEGLRFDF 57

Query:    61 TKGLNQKFSLSHSVIMGPTEIPSQSTET-IKIPTAHYEFGANYIDPKLMLIGRVLTDGRL 119
             T+ LNQKFSLSHSV+MGPTE+P+QS ET IKIPTAHYEFGANY DPKL+LIGRV+TDGRL
Sbjct:    58 TRALNQKFSLSHSVMMGPTEVPAQSPETTIKIPTAHYEFGANYYDPKLLLIGRVMTDGRL 117

Query:   120 NARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNV 179
             NAR+K DL+D L +KANA +TNE HMS  M NFDY G DYR Q Q G  AL GA+YIQ+V
Sbjct:   118 NARLKADLTDKLVVKANALITNEEHMSQAMFNFDYMGSDYRAQLQLGQSALIGATYIQSV 177

Query:   180 SPHLSLGGEVFWAGQHRKSGIGYAARYENDKMV 212
             + HLSLGGE+FWAG  RKSGIGYAARYE DKMV
Sbjct:   178 TNHLSLGGEIFWAGVPRKSGIGYAARYETDKMV 210

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IPI

GO:0006626 "protein targeting to mitochondrion" evidence=ISS;RCA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001510 "RNA methylation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2011887 AT1G50400 [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 137/214 (64%), Positives = 164/214 (76%)

Query:     1 MAGLVPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDF 60
             M G  PP  T + DA T   K +EKVDY NLPCP+ YEE++REA M+LKPELFEG R D+
Sbjct:     1 MEGFSPPINTAQVDAKT---KLDEKVDYSNLPCPVLYEELNREATMALKPELFEGFRLDY 57

Query:    61 TKGLNQKFSLSHSVIMGPTEIPSQ--STETIKIPTAHYEFGANYIDPKLMLIGRVLTDGR 118
              K LNQKF LSHS++MGPTE+P+   S+E IKIPTA+Y+FGA +IDPKL LIGR+ TDGR
Sbjct:    58 NKSLNQKFFLSHSILMGPTEVPNPTPSSEIIKIPTANYDFGAGFIDPKLYLIGRITTDGR 117

Query:   119 LNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQN 178
             LNAR K DL+DN S+KANA LT+E   S G +  DYKG DYRTQ Q GN +++ A+YIQ+
Sbjct:   118 LNARAKFDLTDNFSVKANALLTDEEDKSQGHLVIDYKGSDYRTQLQLGNNSVYAANYIQH 177

Query:   179 VSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMV 212
             V+PHLSLGGE FW GQ   SG+GYAARYE DK V
Sbjct:   178 VTPHLSLGGEAFWLGQQLMSGVGYAARYETDKTV 211

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=IEA;ISS

GO:0008308 "voltage-gated anion channel activity" evidence=IEA;ISS

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

UNIPROTKB|Q7ZTM6 tomm40 "Mitochondrial import receptor subunit TOM40 homolog" [Xenopus laevis (taxid:8355)]

 Score = 203 (76.5 bits), Expect = 4.1e-16, P = 4.1e-16
 Identities = 62/209 (29%), Positives = 102/209 (48%)

Query:     5 VPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGL 64
             VPPG T+ P A      ++++     LP P  +EE HR+    L P   EG++    KGL
Sbjct:    26 VPPGFTMPPVAGLTPTPDKKEPQEERLPNPGTFEECHRKC-KELFPIQMEGVKLIVNKGL 84

Query:    65 NQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLM--------LIGRVLTD 116
             +  F ++H++        S ST    I  ++Y FGA Y+  K +        L+G     
Sbjct:    85 SNYFQVNHTI--------SLST----IGESNYHFGATYVGTKQLGPAEAFPVLVGDFDNS 132

Query:   117 GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN-GALFG--- 172
             G LN ++   +++N+  K   Q T +    +  ++ +Y+G+DY      GN   L G   
Sbjct:   133 GSLNGQIIHQVTNNIRSKIALQ-TQQSKFVNWQLDTEYRGEDYTASVTLGNPDILVGSGI 191

Query:   173 --ASYIQNVSPHLSLGGEVFWAGQHRKSG 199
               A Y+Q+++P L+LGGE+ +   HR+ G
Sbjct:   192 LVAHYLQSITPSLALGGELVY---HRRPG 217

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

UNIPROTKB|Q6P825 tomm40 "Mitochondrial import receptor subunit TOM40 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 201 (75.8 bits), Expect = 7.0e-16, P = 7.0e-16
 Identities = 60/209 (28%), Positives = 101/209 (48%)

Query:     5 VPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGL 64
             VPPG T+ P A      ++++     LP P  +EE HR+    L P   EG++    KGL
Sbjct:    26 VPPGFTMPPVAGLTPTPDKKETQEDRLPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGL 84

Query:    65 NQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLM--------LIGRVLTD 116
             +  F ++H+V +              I  ++Y FGA Y+  K +        L+G +   
Sbjct:    85 SNYFQVNHTVSLS------------MIGESNYHFGATYVGTKQLGPAEAFPVLVGDLDNS 132

Query:   117 GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN-GALFG--- 172
             G LNA++   ++ N+  K   Q T +    +  ++ +Y+G+D+      GN   L G   
Sbjct:   133 GSLNAQIIHQVTSNVRSKIALQ-TQQSKFVNWQLDTEYRGEDFTAAVTLGNPDILVGSGI 191

Query:   173 --ASYIQNVSPHLSLGGEVFWAGQHRKSG 199
               A Y+Q+++P L+LGGE+ +   HR+ G
Sbjct:   192 LVAHYLQSITPSLALGGELVY---HRRPG 217

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

ZFIN|ZDB-GENE-040426-2319 tomm40l "translocase of outer mitochondrial membrane 40 homolog, like" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 66/231 (28%), Positives = 109/231 (47%)

Query:     5 VPPGTTVKP----DASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDF 60
             VPPG T+ P     A ++ P  ++  +   LP P  +EE HR+    + P   EG+R   
Sbjct:    25 VPPGFTMPPVSPVSAPSSSPTGQQDTE-PPLPNPGGFEECHRKC-KEVFPVQMEGVRLTV 82

Query:    61 TKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKL--------MLIGR 112
              KGL+  F ++H+V++        ST+      + Y FGA Y+  K         +++G 
Sbjct:    83 NKGLSNHFQVNHTVLL--------STQA----DSSYRFGATYVGTKQTGPGEAFPVMVGD 130

Query:   113 VLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN-GALF 171
             +   G LNA+V   ++D +  K   Q T +    +   + ++KG+D+     FGN   L 
Sbjct:   131 MDNTGSLNAQVIHQITDKVRSKFVFQ-TQQQKFVNWQGDTEFKGEDFTAAVTFGNPDVLM 189

Query:   172 G-----ASYIQNVSPHLSLGGEVFWAGQHRKSG-----IGYAARYENDKMV 212
             G     A Y+Q+V+  L+LGGE+ +   HR+ G     +  A RY     +
Sbjct:   190 GSGIVVAHYLQSVTSSLALGGELVY---HRRPGEEGTVMSLAGRYTGSNFI 237

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

MGI|MGI:1858259 Tomm40 "translocase of outer mitochondrial membrane 40 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 56/183 (30%), Positives = 88/183 (48%)

Query:    31 LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
             LP P  +EE HR+    L P   EG++    KGL+ +F ++H+V +G             
Sbjct:    77 LPNPGTFEECHRKC-KELFPVQMEGVKLTVNKGLSNRFQVTHTVALGT------------ 123

Query:    91 IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
             I  ++Y FG  Y+  K +        L+G +   G LNA+V   LS  L  K   Q T +
Sbjct:   124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLSPGLRSKMAIQ-TQQ 182

Query:   143 PHMSHGMINFDYKGKDYRTQFQFGN-GALFG-----ASYIQNVSPHLSLGGEVFWAGQHR 196
                 +  ++ +Y+G D+      GN   L G     A Y+Q+++P L+LGGE+ +   HR
Sbjct:   183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query:   197 KSG 199
             + G
Sbjct:   240 RPG 242

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=ISO

GO:0006626 "protein targeting to mitochondrion" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006820 "anion transport" evidence=IEA

GO:0008308 "voltage-gated anion channel activity" evidence=IEA

GO:0008320 "protein transmembrane transporter activity" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0015288 "porin activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISO

GO:0032592 "integral to mitochondrial membrane" evidence=IDA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0046930 "pore complex" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|1303022 Tomm40 "translocase of outer mitochondrial membrane 40 homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 56/183 (30%), Positives = 88/183 (48%)

Query:    31 LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
             LP P  +EE HR+    L P   EG++    KGL+ +F ++H+V +G             
Sbjct:    77 LPNPGTFEECHRKC-KELFPVQMEGVKLTVNKGLSNRFQVTHTVALGT------------ 123

Query:    91 IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
             I  ++Y FG  Y+  K +        L+G +   G LNA+V   LS  L  K   Q T +
Sbjct:   124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLSPGLRSKMAIQ-TQQ 182

Query:   143 PHMSHGMINFDYKGKDYRTQFQFGN-GALFG-----ASYIQNVSPHLSLGGEVFWAGQHR 196
                 +  ++ +Y+G D+      GN   L G     A Y+Q+++P L+LGGE+ +   HR
Sbjct:   183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query:   197 KSG 199
             + G
Sbjct:   240 RPG 242

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IEA;ISO;IDA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA;ISO;IMP;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0008320 "protein transmembrane transporter activity" evidence=IMP

GO:0015031 "protein transport" evidence=TAS

GO:0015288 "porin activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0032592 "integral to mitochondrial membrane" evidence=IEA;ISO

GO:0046930 "pore complex" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1RM44 F1RM44 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 56/184 (30%), Positives = 88/184 (47%)

Query:    30 NLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETI 89
             +LP P  +EE HR+    L P   EG++    KGL+  F ++H+V +        ST   
Sbjct:    22 SLPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGLSNHFQVNHTVAL--------ST--- 69

Query:    90 KIPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTN 141
              I  ++Y FG  Y+  K +        L+G +   G LNA+V   L   L  K   Q T 
Sbjct:    70 -IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQ-TQ 127

Query:   142 EPHMSHGMINFDYKGKDYRTQFQFGN-GALFG-----ASYIQNVSPHLSLGGEVFWAGQH 195
             +    +  ++ +Y+G D+      GN   L G     A Y+Q+++P L+LGGE+ +   H
Sbjct:   128 QSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---H 184

Query:   196 RKSG 199
             R+ G
Sbjct:   185 RRPG 188

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

UNIPROTKB|Q1LZB5 TOMM40 "Mitochondrial import receptor subunit TOM40 homolog" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 56/183 (30%), Positives = 87/183 (47%)

Query:    31 LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
             LP P  +EE HR+    L P   EG++    KGL+  F ++H+V +        ST    
Sbjct:    77 LPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGLSNHFQVNHTVAL--------ST---- 123

Query:    91 IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
             I  ++Y FG  Y+  K +        L+G +   G LNA+V   L   L  K   Q T +
Sbjct:   124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQ-TQQ 182

Query:   143 PHMSHGMINFDYKGKDYRTQFQFGN-GALFG-----ASYIQNVSPHLSLGGEVFWAGQHR 196
                 +  ++ +Y+G D+      GN   L G     A Y+Q+++P L+LGGE+ +   HR
Sbjct:   183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query:   197 KSG 199
             + G
Sbjct:   240 RPG 242

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

GO:0032592 "integral to mitochondrial membrane" evidence=IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|O96008 TOMM40 "Mitochondrial import receptor subunit TOM40 homolog" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 56/183 (30%), Positives = 87/183 (47%)

Query:    31 LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
             LP P  +EE HR+    L P   EG++    KGL+  F ++H+V +        ST    
Sbjct:    77 LPNPGTFEECHRKC-KELFPIQMEGVKLTVNKGLSNHFQVNHTVAL--------ST---- 123

Query:    91 IPTAHYEFGANYIDPKLM--------LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNE 142
             I  ++Y FG  Y+  K +        L+G +   G LNA+V   L   L  K   Q T +
Sbjct:   124 IGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQ-TQQ 182

Query:   143 PHMSHGMINFDYKGKDYRTQFQFGN-GALFG-----ASYIQNVSPHLSLGGEVFWAGQHR 196
                 +  ++ +Y+G D+      GN   L G     A Y+Q+++P L+LGGE+ +   HR
Sbjct:   183 SKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVY---HR 239

Query:   197 KSG 199
             + G
Sbjct:   240 RPG 242

GO:0006811 "ion transport" evidence=IEA

GO:0015288 "porin activity" evidence=IEA

GO:0046930 "pore complex" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IMP;TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=IMP

GO:0016021 "integral to membrane" evidence=IDA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0008320 "protein transmembrane transporter activity" evidence=ISS;TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LHE5	TO401_ARATH	No assigned EC number	0.7276	0.8744	0.6763	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
cd07305	279	cd07305, Porin3_Tom40, Translocase of outer mitoch	1e-58
pfam01459	272	pfam01459, Porin_3, Eukaryotic porin	2e-37
TIGR00989	161	TIGR00989, 3a0801s07tom40, mitochondrial import re	5e-16
cd07303	274	cd07303, Porin3, Eukaryotic porin family that form	7e-08
cd07306	276	cd07306, Porin3_VDAC, Voltage-dependent anion chan	2e-04

>gnl|CDD|132766 cd07305, Porin3_Tom40, Translocase of outer mitochondrial membrane 40 (Tom40)

 Score =  186 bits (474), Expect = 1e-58
 Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 22/192 (11%)

Query: 31  LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIK 90
           LP P  +EE+HRE       + F+G R D  KGL+  F +SHS+ +G + + S       
Sbjct: 1   LPNPGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSSSLTS------- 53

Query: 91  IPTAHYEFGANYIDPK--LMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHG 148
                Y+FGA Y+  K    L G +  DG LNAR+   L D L  K  AQL +    +  
Sbjct: 54  ----SYQFGATYVGDKQYPFLQGDIDNDGNLNARIIHQLGDRLRSKLQAQLQDS-KFNMS 108

Query: 149 MINFDYKGKDYRTQFQFGN------GALFGASYIQNVSPHLSLGGEVFWA--GQHRKSGI 200
            +  DY+G D+    +  N        ++ ASY+Q+V+P L+LGGE+ +     +  S +
Sbjct: 109 QLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPKLALGGELVYQRVPGNGISVL 168

Query: 201 GYAARYENDKMV 212
            YAARY     +
Sbjct: 169 SYAARYTAGNWI 180

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery. Length = 279

>gnl|CDD|216515 pfam01459, Porin_3, Eukaryotic porin

 Score =  131 bits (332), Expect = 2e-37
 Identities = 51/186 (27%), Positives = 74/186 (39%), Gaps = 28/186 (15%)

Query: 33  CPIPYEEIHREA--LMSLKPELFEGLRFDFTK--GLNQKFSLSHSVIMGPTEIPSQSTET 88
            P  YE+I +EA  L++ K   F+G + D T    L   F++S S  +G           
Sbjct: 1   NPGTYEDIGKEARDLLN-KDYHFDGAKLDVTTKSPLGVAFTVSGSKSLGGG--------- 50

Query: 89  IKIPTAHYEFGANYID--PKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMS 146
                +  +F A Y D    L L      D   NA V   L+  L LK + QL       
Sbjct: 51  ----LSSGDFEAKYKDKGLTLTLKWDTDNDLSTNATVNDQLAPGLKLKLSTQLVPGTGKK 106

Query: 147 HGMINFDYKGKDYRTQFQFGNGA--LFGASYIQNVSPHLSLGGEVFWAGQHRKS-----G 199
              +  +YKG D+    + G     +   S +Q V+  L+LG E  +     K       
Sbjct: 107 SAKLELEYKGDDFTASLKVGLLKGPIVVGSALQGVT-GLALGAEAVYDTASGKLTKYNAA 165

Query: 200 IGYAAR 205
           +GYAAR
Sbjct: 166 LGYAAR 171

Length = 272

>gnl|CDD|130062 TIGR00989, 3a0801s07tom40, mitochondrial import receptor subunit Tom40

 Score = 72.6 bits (178), Expect = 5e-16
 Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 27/165 (16%)

Query: 38  EEIHREALMSLKPELFEGLRFDFTKG--LNQKFSLSHSVIMGPTEIPSQSTETIKIPTAH 95
           +E+ R+ L+S    +F GLR D TK   L   F +SH   MG   +P             
Sbjct: 12  KEVSRDTLLS--NYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQRLPP------------ 57

Query: 96  YEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTN-EPHMSHGMINFDY 154
           Y F A +   +L   G +  DG ++ R+     D    K   Q++  +P M       D+
Sbjct: 58  YAFSALFGTNQLFAQGNLDNDGAVSTRLNYRWGDRTISKVQFQISGGQPDMCQ--FEHDH 115

Query: 155 KGKDYRTQFQ-----FGNGALFG---ASYIQNVSPHLSLGGEVFW 191
            G D+    +     F    L G    SY+Q+V+P L LG E  W
Sbjct: 116 LGDDFSASLKAINPSFLEKGLTGIFVGSYLQSVTPRLGLGLEALW 160

The mitochondrial protein translocase (MPT) family, which brings nuclearly encoded preproteins into mitochondria, is very complex with 19 currently identified protein constituents.These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins [Transport and binding proteins, Amino acids, peptides and amines]. Length = 161

>gnl|CDD|132765 cd07303, Porin3, Eukaryotic porin family that forms channels in the mitochondrial outer membrane

 Score = 51.5 bits (123), Expect = 7e-08
 Identities = 26/176 (14%), Positives = 47/176 (26%), Gaps = 11/176 (6%)

Query: 37  YEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTE---IPSQSTETIKIPT 93
           Y E+ + A          G++ D       +F+ S S      E       S ET    +
Sbjct: 2   YAELGKSARDLFTKGYGGGIKLDVKTKSELEFTSSGSANTETIESTTKVGGSLETKYRWS 61

Query: 94  AHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFD 153
            +                       L   V+  LS  L    ++  +      +  I   
Sbjct: 62  PYGLT--------FTEKWNTDNTLGLEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTG 113

Query: 154 YKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYEND 209
           YK  +      F          +         G ++ +    R +   +A  Y+ D
Sbjct: 114 YKRINLGCDVDFDIAGPLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVGYKTD 169

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane. Length = 274

>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer mitochondrial membrane

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 30/134 (22%)

Query: 106 KLMLIGRV--LTDGRLNARVKCDLS-DNLSLKANAQLTNEPHMSH------------GMI 150
           KL L       T  + + ++K     D +++ A+  L   P +                +
Sbjct: 91  KLTLDTTFPPNTGKK-SGKLKAGYKHDPININADVDLNKGPLVGASAVLGYKGFLLGAEV 149

Query: 151 NFD--------------YKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHR 196
            +D              Y   D+    +  NG     SY   VSP L++G +V W     
Sbjct: 150 VYDTAKSKFTKYNFALGYTNGDFELSLKLNNGKTLRGSYFHKVSPRLAVGAKVTWYSGTN 209

Query: 197 KSGIGYAARYENDK 210
           ++      +Y  D 
Sbjct: 210 ETTFAVGGQYALDP 223

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies. Length = 276

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
TIGR00989	161	3a0801s07tom40 mitochondrial import receptor subun	100.0
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	100.0
KOG3296	308	consensus Translocase of outer mitochondrial membr	100.0
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	100.0
cd07303	274	Porin3 Eukaryotic porin family that forms channels	100.0
cd07305	279	Porin3_Tom40 Translocase of outer mitochondrial me	99.72
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	99.15
cd07306	276	Porin3_VDAC Voltage-dependent anion channel of the	99.05
PF01459	273	Porin_3: Eukaryotic porin; InterPro: IPR001925 The	98.91
cd07303	274	Porin3 Eukaryotic porin family that forms channels	98.62
KOG3126	281	consensus Porin/voltage-dependent anion-selective	97.93
PF12519	260	DUF3722: Protein of unknown function (DUF3722) ; I	97.14
KOG3296	308	consensus Translocase of outer mitochondrial membr	94.98

>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40

Probab=100.00  E-value=4.9e-55  Score=363.56  Aligned_cols=149  Identities=30%  Similarity=0.495  Sum_probs=139.3

Q ss_pred             CCCCCCHHHHHHHH-hhc-cCccccceEEEEeccc--CCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCc
Q 026413           31 LPCPIPYEEIHREA-LMS-LKPELFEGLRFDFTKG--LNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK  106 (239)
Q Consensus        31 L~nPG~~E~l~re~-k~~-l~~~~FeG~R~dv~K~--ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k  106 (239)
                      |+|||+|||||||| |++ +.|+.|||+|+|++|+  |||+|||||+|+||+...|            .|+|||+|++++
T Consensus         1 l~nPGt~E~l~re~~rdv~l~~~~FeG~R~d~~K~~~ls~~FqvSHs~~mgs~~~p------------~Y~FgA~y~~~~   68 (161)
T TIGR00989         1 LSNPGTIENLAKEVSRDTLLSNYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQRLP------------PYAFSALFGTNQ   68 (161)
T ss_pred             CcCCccHHHHHHHHhhhcccCccccccEEEEEecccccCCceeEEEEEEeCCCCCC------------CceeeeEecCCc
Confidence            78999999999999 553 6788999999999999  5999999999999986533            799999999999


Q ss_pred             eEEEEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEEEeCCC--------eeEEeEEEe
Q 026413          107 LMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGA--------LFGASYIQN  178 (239)
Q Consensus       107 ~~l~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK~~n~~--------~~~~syLQS  178 (239)
                      ++|+|+||+||+|+||++|+|++++++|+++|++++ +..++|+|+||+|+||+++||++||+        ++++|||||
T Consensus        69 ~~l~G~id~dG~l~ar~~~~~~~~~~~K~~~Q~~~~-~~~~~Q~e~DY~G~Dft~~lk~~Np~~~~~~~sGi~v~sylQs  147 (161)
T TIGR00989        69 LFAQGNLDNDGAVSTRLNYRWGDRTISKVQFQISGG-QPDMCQFEHDHLGDDFSASLKAINPSFLEKGLTGIFVGSYLQS  147 (161)
T ss_pred             EEEEEEeCCCCCEEEEEEEeeCcceeEEEEEEecCC-CCceEEEEEEecCCeEEEEEEEcCcccccccceEEEEEeeeeh
Confidence            999999999999999999999999999999999875 46899999999999999999999987        689999999


Q ss_pred             eCCceeeeeeEEEe
Q 026413          179 VSPHLSLGGEVFWA  192 (239)
Q Consensus       179 VTprLsLG~E~~y~  192 (239)
                      ||||||||+|++||
T Consensus       148 VTp~LaLG~E~~yq  161 (161)
T TIGR00989       148 VTPRLGLGLEALWQ  161 (161)
T ss_pred             hCcceeeeeeeEeC
Confidence            99999999999996

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=100.00  E-value=4.2e-50  Score=361.09  Aligned_cols=190  Identities=34%  Similarity=0.609  Sum_probs=177.2

Q ss_pred             CCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCc--eE
Q 026413           31 LPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK--LM  108 (239)
Q Consensus        31 L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k--~~  108 (239)
                      |||||+|||||||||+++.++.|||+|+|++|.|||+||++|+|+||+..+           ++.|+|+++|++++  .+
T Consensus         1 ~~nPg~~e~l~~e~k~~~~~~~~~G~r~~~~k~ls~~f~~shs~~lg~~~~-----------~~~y~f~a~y~~~~~~~~   69 (279)
T cd07305           1 LPNPGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSSSL-----------TSSYQFGATYVGDKQYPF   69 (279)
T ss_pred             CcCCccHHHHHHHHHHhcCccccccEEEEEccccCcCeeEEEEEEECCCCC-----------CCCcEeeeEEecCCCcEE
Confidence            699999999999999987778888999999999999999999999998642           24899999999999  99


Q ss_pred             EEEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEEEeCC------CeeEEeEEEeeCCc
Q 026413          109 LIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNG------ALFGASYIQNVSPH  182 (239)
Q Consensus       109 l~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK~~n~------~~~~~syLQSVTpr  182 (239)
                      ++|+||++|+|++|++++|++++++|+++|+.++ +.+.+|+++||+|+||++++|+.|+      ++++++|||+|||+
T Consensus        70 ~~~~id~~g~l~~~~~~~~~~~~~~k~~~~~~~~-~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~  148 (279)
T cd07305          70 LQGDIDNDGNLNARIIHQLGDRLRSKLQAQLQDS-KFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPK  148 (279)
T ss_pred             EEEEeCCCCceeEEEEeccCcceEEEEEEEecCC-CceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCc
Confidence            9999999999999999999999999999999876 6789999999999999999999999      46899999999999


Q ss_pred             eeeeeeEEEe--ccCCcceeEEEEEeeCCCeEEEeeeccc-eeeeEEEEEcCc
Q 026413          183 LSLGGEVFWA--GQHRKSGIGYAARYENDKMVMYFICVLH-MMFAVIWSITPA  232 (239)
Q Consensus       183 LsLG~E~~y~--~~~~~s~~s~aaRY~~~~~iasa~l~~~-~~~~sy~~~~~~  232 (239)
                      |+||+|++|+  ...+.+.+++++||++++|+++++++.. .+.+||||.-.-
T Consensus       149 l~lG~E~~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~~~l~asY~~kvs~  201 (279)
T cd07305         149 LALGGELVYQRVPGNGISVLSYAARYTAGNWIASGQLGAQGGLHLSYYRKLSD  201 (279)
T ss_pred             EEEEEEEEEEEcCCCCceeEEEEEEEccCCEEEEEEEcCCCeEEEEEEEEccc
Confidence            9999999999  4677899999999999999999999995 999999997543

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-44  Score=325.53  Aligned_cols=203  Identities=31%  Similarity=0.482  Sum_probs=175.8

Q ss_pred             CchhhhccCCCCCCCCHHHHHHHHhhccCccccceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeE
Q 026413           21 KEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGA  100 (239)
Q Consensus        21 ~~~~~~~~~~L~nPG~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga  100 (239)
                      ...+.+...+++|||++|+||+||+  ++|..+||++++++|.||++|||+|++.|++....    ...+-|++.|.|++
T Consensus        17 ~~~~~~~~~~~~Npgt~e~L~~~~~--~~p~~~~g~kl~v~k~Ls~~fqvs~t~~ls~~~~s----g~~fg~ty~~~~q~   90 (308)
T KOG3296|consen   17 SNLSRRACYNLLNPGTVEELHSEAS--VDPTLSEGVKLGVNKGLSNHFQVSPTFVLSHIAAS----GYRFGPTYVYTFQA   90 (308)
T ss_pred             cccccccccccCCcHHHHHhhhhhc--cCceeecceEeeecccccCceEeccceecccCccc----cceeccceeeeecc
Confidence            3446677789999999999999998  79999999999999999999999999999976411    01112233344444


Q ss_pred             EEeCCceEEEEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEEEeCCC-----eeEEeE
Q 026413          101 NYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGA-----LFGASY  175 (239)
Q Consensus       101 ~y~~~k~~l~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK~~n~~-----~~~~sy  175 (239)
                      .|...+.+++|+||+||+|+++++|+|++++++|+++|++++ +....|++.||+|.||++.++.+|+.     +++++|
T Consensus        91 ~~~~~~~il~G~vD~~Gslna~l~~~l~~~Lr~K~~~q~~~~-k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~  169 (308)
T KOG3296|consen   91 SPTEAFLILRGDVDNDGSLNARLIHQLTDNLRSKVALQIQQS-KEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASY  169 (308)
T ss_pred             ccCCCcceEEEecCCCCchhheeecccchhhHHHHHHHhcch-hhhccccccceecccccccccccCcccccchHHHHHH
Confidence            444455799999999999999999999999999999999975 68889999999999999999999986     378899


Q ss_pred             EEeeCCceeeeeeEEEec--cCCcceeEEEEEeeCCCeEEEeeeccceeeeEEEEEc
Q 026413          176 IQNVSPHLSLGGEVFWAG--QHRKSGIGYAARYENDKMVMYFICVLHMMFAVIWSIT  230 (239)
Q Consensus       176 LQSVTprLsLG~E~~y~~--~~~~s~~s~aaRY~~~~~iasa~l~~~~~~~sy~~~~  230 (239)
                      ||||||+||||+|++|++  +..++++||++||.+.+|++++++++.+++++||+..
T Consensus       170 lqsvT~~LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~~g~~~~y~~r~  226 (308)
T KOG3296|consen  170 LQSVTPRLSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQQGLTGTYYQRA  226 (308)
T ss_pred             HhhhcccccccceeEeccCCCccccceeeeeeeeecceeeEEecccccceehhhhhh
Confidence            999999999999999999  4578999999999999999999999999999999853

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=100.00  E-value=1.2e-34  Score=255.81  Aligned_cols=188  Identities=33%  Similarity=0.541  Sum_probs=161.8

Q ss_pred             CCCCHHHHHHHHhhccCcc-ccceEEEEecc--cCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCceEE
Q 026413           33 CPIPYEEIHREALMSLKPE-LFEGLRFDFTK--GLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLML  109 (239)
Q Consensus        33 nPG~~E~l~re~k~~l~~~-~FeG~R~dv~K--~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k~~l  109 (239)
                      |||+||||+||+|+++..+ +|||+|+|++|  .++++|+++|+++++...            +..|+|++.|.+.+..+
T Consensus         1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~   68 (273)
T PF01459_consen    1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSV------------PSSYSFGAKYKGPKLTV   68 (273)
T ss_dssp             -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--------------EEEEEEEEEECEEEEE
T ss_pred             CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCC------------ccceEEEEEEeCceeeE
Confidence            7999999999999877766 79999999999  899999999999999852            35899999999988999


Q ss_pred             EEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEEEeC--CCeeEEeEEEeeCCceeeee
Q 026413          110 IGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN--GALFGASYIQNVSPHLSLGG  187 (239)
Q Consensus       110 ~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK~~n--~~~~~~syLQSVTprLsLG~  187 (239)
                      ++++|++|++++++.+.+.+++++|+.+++.++......++++||++++|++++++.+  ..++.++|+|+|+|+|+||+
T Consensus        69 ~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~  148 (273)
T PF01459_consen   69 KGDTDNDGNLEASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGA  148 (273)
T ss_dssp             EEETTTEEEEEEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEE
T ss_pred             EEEeCCcccEEEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEE
Confidence            9999999999999999999999999999998765457899999999999999999998  66799999999999999999


Q ss_pred             eEEEeccCCcce-----eEEEEEeeCCCeEEEeeec--cceeeeEEEEEcCc
Q 026413          188 EVFWAGQHRKSG-----IGYAARYENDKMVMYFICV--LHMMFAVIWSITPA  232 (239)
Q Consensus       188 E~~y~~~~~~s~-----~s~aaRY~~~~~iasa~l~--~~~~~~sy~~~~~~  232 (239)
                      |++|........     ++|++||.+++|++++++.  ...+.+||||....
T Consensus       149 e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~  200 (273)
T PF01459_consen  149 EATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVND  200 (273)
T ss_dssp             EEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESST
T ss_pred             EEEEecccCCcCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEecc
Confidence            999998876554     9999999999999999996  45999999998643

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=100.00  E-value=2.8e-32  Score=245.29  Aligned_cols=183  Identities=13%  Similarity=0.082  Sum_probs=165.1

Q ss_pred             CHHHHHHHHhhccCccccceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCc--------e
Q 026413           36 PYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK--------L  107 (239)
Q Consensus        36 ~~E~l~re~k~~l~~~~FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k--------~  107 (239)
                      +|+||+|+||+++.++.|+|+|+|++|.++++|+++|++.+++.             ++.|.|+++|...+        .
T Consensus         1 ~~~digk~ardll~~~~~~g~k~~v~~~~~~~f~~s~~~~~~~~-------------~~~~~~~~~~~~k~~~~~~~~t~   67 (274)
T cd07303           1 TYAELGKSARDLFTKGYGGGIKLDVKTKSELEFTSSGSANTETI-------------ESTTKVGGSLETKYRWSPYGLTF   67 (274)
T ss_pred             ChhHhhhhhHHhcccCCCCCEEEEEEecCCCccEEccccccccc-------------CCCceEEEEEEEeeeecCCCeEE
Confidence            59999999999888898889999999999999999999999974             24899999999754        3


Q ss_pred             EEEEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEEEeCCCeeEEeEEEeeCCceeeee
Q 026413          108 MLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGG  187 (239)
Q Consensus       108 ~l~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK~~n~~~~~~syLQSVTprLsLG~  187 (239)
                      ++++++|++|+++++++++|.+++++|+++|+.++......|+++||+++|+++++++.+.++++.+|+|++||+|+||+
T Consensus        68 ~~~~~~dn~~~~~~~~~~~~~~glk~~~~~~~~~~~~~~~~q~~~~y~~~~~~~~l~~~~~gp~v~~~~~~g~~~~~~G~  147 (274)
T cd07303          68 TEKWNTDNTLGLEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFDIAGPLIRGALVLGYEGWLAGY  147 (274)
T ss_pred             EEEEEcCCcceEEEEEecccCCCeEEEEEEEECCCCccEEEEEeccEEcCCeeEEEEeecCCCEEEEEEEEeecceEEEE
Confidence            89999999999999999999999999999999875567789999999999999999998888888899999999999999


Q ss_pred             eEEEeccC----CcceeEEEEEeeCCCeEEEeeecc-ceeeeEEEEEcCce
Q 026413          188 EVFWAGQH----RKSGIGYAARYENDKMVMYFICVL-HMMFAVIWSITPAC  233 (239)
Q Consensus       188 E~~y~~~~----~~s~~s~aaRY~~~~~iasa~l~~-~~~~~sy~~~~~~~  233 (239)
                      |++|....    ...+++|++||  ++|++++++.. ..+.+||||.-.-.
T Consensus       148 e~~yd~~~~~~~~~~~~~y~~~y--~d~~~s~~l~~~~~l~~Sy~hkvs~~  196 (274)
T cd07303         148 QMVFETVSRVTQSNFAVGYKTDY--NEFQAHTNVNDGTEFGGSIYHKVNDK  196 (274)
T ss_pred             EEEEeccccccccceEEEEEccC--CCeEEEEEEcCCCeEEEEEEEEcCCc
Confidence            99999743    35579999999  89999999988 59999999876543

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40)

Probab=99.72  E-value=2.3e-15  Score=135.69  Aligned_cols=166  Identities=13%  Similarity=0.071  Sum_probs=141.1

Q ss_pred             cccceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCceEEEEE-ecC-----CCceeEEEE
Q 026413           51 ELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGR-VLT-----DGRLNARVK  124 (239)
Q Consensus        51 ~~FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k~~l~g~-vD~-----~G~L~ar~~  124 (239)
                      |.---+...+++.++++|.+.|++.+....            ...|+|...|.+++..+--. .++     .|.+.++++
T Consensus        75 d~~g~l~~~~~~~~~~~~~~k~~~~~~~~~------------~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~yl  142 (279)
T cd07305          75 DNDGNLNARIIHQLGDRLRSKLQAQLQDSK------------FNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYL  142 (279)
T ss_pred             CCCCceeEEEEeccCcceEEEEEEEecCCC------------ceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEE
Confidence            333446788888999999999999997542            35899999999988533333 333     599999999


Q ss_pred             eecCCCceEEEEEEEc--CCCCcceeEEEEEEecCceEEEEEEeCCCeeEEeEEEeeCCceeeeeeEEEeccCCcceeEE
Q 026413          125 CDLSDNLSLKANAQLT--NEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGY  202 (239)
Q Consensus       125 ~~l~~~l~~K~~~ql~--~~~~~~~~q~e~Dy~G~d~taslK~~n~~~~~~syLQSVTprLsLG~E~~y~~~~~~s~~s~  202 (239)
                      +.++++|.++..++..  .+.......+.++|+++||++++++.+.+.+.++|.|.|+++|++|+|+.|....+++.+++
T Consensus       143 q~vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tv  222 (279)
T cd07305         143 QSVTPKLALGGELVYQRVPGNGISVLSYAARYTAGNWIASGQLGAQGGLHLSYYRKLSDKLQLGVELELNLRTRESTATL  222 (279)
T ss_pred             EEccCcEEEEEEEEEEEcCCCCceeEEEEEEEccCCEEEEEEEcCCCeEEEEEEEEcccceEeeeeeeecccCCceeEEE
Confidence            9999999999999877  55667788899999999999999999988899999999999999999999999889999999


Q ss_pred             EEEeeCCCeEEEeeeccceeeeEEEE
Q 026413          203 AARYENDKMVMYFICVLHMMFAVIWS  228 (239)
Q Consensus       203 aaRY~~~~~iasa~l~~~~~~~sy~~  228 (239)
                      ++||.-+++++.+++.....-...|+
T Consensus       223 g~~y~~~~~~~k~~ids~g~v~~~~e  248 (279)
T cd07305         223 GYQYDFRQSRFRGSIDSNGKVSAVLE  248 (279)
T ss_pred             EEEEEcCCCEEEEEEcCCCEEEEEEE
Confidence            99999999999999988855555553

Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=99.15  E-value=2.9e-08  Score=89.43  Aligned_cols=134  Identities=16%  Similarity=0.231  Sum_probs=102.1

Q ss_pred             ceEEeEEEeCCceEEEEEecCC--CceeEEEEeecCCCceEEEEEEEcCC-CCcceeEEEEEEecCceEEEEEEeCCCee
Q 026413           95 HYEFGANYIDPKLMLIGRVLTD--GRLNARVKCDLSDNLSLKANAQLTNE-PHMSHGMINFDYKGKDYRTQFQFGNGALF  171 (239)
Q Consensus        95 ~Y~fga~y~~~k~~l~g~vD~~--G~L~ar~~~~l~~~l~~K~~~ql~~~-~~~~~~q~e~Dy~G~d~taslK~~n~~~~  171 (239)
                      +..+.+.|..+..-+-++||..  =.+++.+.... ++|.+=..+...-. .+.....+-+-|+++||++++++.|...+
T Consensus       106 s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~-~~~~~G~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~~~~l  184 (276)
T cd07306         106 SGKLKAGYKHDPININADVDLNKGPLVGASAVLGY-KGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKLNNGKTL  184 (276)
T ss_pred             eEEEEEEEecCCeeEEEEecccCCCeeEEEEEecc-cceEEEEEEEEeccCCcEeeEEEEEEEecCCeEEEEEECCCCEE
Confidence            4566777777766666666543  23444444332 55554444433211 24566778889999999999999998889


Q ss_pred             EEeEEEeeCCceeeeeeEEEeccCCcceeEEEEEeeCCC-eEEEeeeccc-eeeeEEEEE
Q 026413          172 GASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK-MVMYFICVLH-MMFAVIWSI  229 (239)
Q Consensus       172 ~~syLQSVTprLsLG~E~~y~~~~~~s~~s~aaRY~~~~-~iasa~l~~~-~~~~sy~~~  229 (239)
                      .+||+|.|+++|++|+|+.|.....++.+++++||.-++ +++-|++... .+.++|++.
T Consensus       185 ~~S~~~kv~~~l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vkakv~~~g~v~~~y~~k  244 (276)
T cd07306         185 RGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGLSYQHK  244 (276)
T ss_pred             EEEEEEEcCCCeEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEEEEECCCceEEEEEEEE
Confidence            999999999999999999999887889999999998775 9999999887 899999884

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane

Probab=99.05  E-value=1.2e-07  Score=85.29  Aligned_cols=188  Identities=18%  Similarity=0.204  Sum_probs=133.8

Q ss_pred             CCCHHHHHHHHhhccCc-cccceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCceEEEEE
Q 026413           34 PIPYEEIHREALMSLKP-ELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGR  112 (239)
Q Consensus        34 PG~~E~l~re~k~~l~~-~~FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k~~l~g~  112 (239)
                      |+.|-||.|.||++|.. ..|...++|++-.-.+.+.++-.-......           ....=.+.+.|....+.+-=.
T Consensus         1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~-----------~~~~g~~e~k~~~~~~t~~~k   69 (276)
T cd07306           1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDT-----------GKVSGSLEAKYKIKGLTLTQK   69 (276)
T ss_pred             CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCC-----------ceEEEEEEEEEEeCCEEEEEE
Confidence            78999999999987654 555788999887655444333222222110           011234555555556677778


Q ss_pred             ecCCCceeEEEEee--cCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEEEeC--CCeeEEeEEEeeCCceeeeee
Q 026413          113 VLTDGRLNARVKCD--LSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQFGN--GALFGASYIQNVSPHLSLGGE  188 (239)
Q Consensus       113 vD~~G~L~ar~~~~--l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK~~n--~~~~~~syLQSVTprLsLG~E  188 (239)
                      ++.++.|.+.+-..  +.+.+.+-+...+.+........++++|..+...+...+.-  +..+.++-.... ++|++|+|
T Consensus        70 ~~t~n~l~t~v~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~-~~~~~G~e  148 (276)
T cd07306          70 WNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLGY-KGFLLGAE  148 (276)
T ss_pred             EeCCCceeEEEEECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEecc-cceEEEEE
Confidence            89899988887654  33666666655555422334567899999998888776554  445666777765 89999999


Q ss_pred             EEEeccC-CcceeEEEEEeeCCCeEEEeeeccc-eeeeEEEEEcCce
Q 026413          189 VFWAGQH-RKSGIGYAARYENDKMVMYFICVLH-MMFAVIWSITPAC  233 (239)
Q Consensus       189 ~~y~~~~-~~s~~s~aaRY~~~~~iasa~l~~~-~~~~sy~~~~~~~  233 (239)
                      +.|.... ..+..++++||++++|++++++... .+.+||||-..-+
T Consensus       149 ~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~~~~l~~S~~~kv~~~  195 (276)
T cd07306         149 VVYDTAKSKFTKYNFALGYTNGDFELSLKLNNGKTLRGSYFHKVSPR  195 (276)
T ss_pred             EEEeccCCcEeeEEEEEEEecCCeEEEEEECCCCEEEEEEEEEcCCC
Confidence            9998775 4678999999999999999999874 9999999976544

The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.

>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]

Probab=98.91  E-value=6e-07  Score=79.21  Aligned_cols=160  Identities=21%  Similarity=0.226  Sum_probs=116.8

Q ss_pred             EEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCceEEEEEecC--CCceeEEEEeecCCCceE
Q 026413           56 LRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPKLMLIGRVLT--DGRLNARVKCDLSDNLSL  133 (239)
Q Consensus        56 ~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k~~l~g~vD~--~G~L~ar~~~~l~~~l~~  133 (239)
                      +.+++...+.+.+.+.-...+....           -...+++.+.|.++...+..+++.  .+.+.+.+.+.++++|.+
T Consensus        78 ~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~l  146 (273)
T PF01459_consen   78 LEASVRNKLSPGLKLKLSAQLSPGS-----------GKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLAL  146 (273)
T ss_dssp             EEEEEESSTTTTEEEEEEEEE-TTT-----------S-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEE
T ss_pred             EEEEEecccCcceEEEEEEEEeecC-----------CceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEE
Confidence            3444444455555555444443321           014899999999999877777776  899999999999999998


Q ss_pred             EEEEEEcCCC-CcceeEEEEEEecC----ceEEEEEEe-CCCeeEEeEEEeeCCceeeeeeEEEeccCCcceeEEEEEee
Q 026413          134 KANAQLTNEP-HMSHGMINFDYKGK----DYRTQFQFG-NGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYE  207 (239)
Q Consensus       134 K~~~ql~~~~-~~~~~q~e~Dy~G~----d~taslK~~-n~~~~~~syLQSVTprLsLG~E~~y~~~~~~s~~s~aaRY~  207 (239)
                      =..+...... ......+.+-|.++    ||++++++. +...+.++|.|.|+++|++|.|+.|.....++.+++++||.
T Consensus       147 G~e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~~  226 (273)
T PF01459_consen  147 GAEATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQYK  226 (273)
T ss_dssp             EEEEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEEE
T ss_pred             EEEEEEecccCCcCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEEE
Confidence            8777654332 22223345666666    999999996 56778999999999999999999999888899999999999


Q ss_pred             CCCe-EEEeeeccc-eeeeEE
Q 026413          208 NDKM-VMYFICVLH-MMFAVI  226 (239)
Q Consensus       208 ~~~~-iasa~l~~~-~~~~sy  226 (239)
                      -+++ .+-+.+... -+.++|
T Consensus       227 l~~~~~vk~kvds~g~v~~~~  247 (273)
T PF01459_consen  227 LDDSSTVKAKVDSNGRVSASY  247 (273)
T ss_dssp             ECTTEEEEEEEETTSEEEEEE
T ss_pred             cCcccEEEEEEcCCCEEEEEE
Confidence            8888 777888887 444444

The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.

>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane

Probab=98.62  E-value=2.2e-05  Score=70.98  Aligned_cols=131  Identities=14%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             eEEeEEEeCCceEEEEEecCCCceeEEEEeecCCCceEEEEEEEcCCCCcceeEEEEEEec--CceEEEEEEeCCCeeEE
Q 026413           96 YEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKG--KDYRTQFQFGNGALFGA  173 (239)
Q Consensus        96 Y~fga~y~~~k~~l~g~vD~~G~L~ar~~~~l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G--~d~taslK~~n~~~~~~  173 (239)
                      -++..-|.++...+-..+|..|-+-.......+++|.+=..+-..-........+.+-|.+  +||++++++.|.+.+.+
T Consensus       108 ~q~~~~y~~~~~~~~l~~~~~gp~v~~~~~~g~~~~~~G~e~~yd~~~~~~~~~~~~~y~~~y~d~~~s~~l~~~~~l~~  187 (274)
T cd07303         108 AKIKTGYKRINLGCDVDFDIAGPLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVGYKTDYNEFQAHTNVNDGTEFGG  187 (274)
T ss_pred             EEEeccEEcCCeeEEEEeecCCCEEEEEEEEeecceEEEEEEEEeccccccccceEEEEEccCCCeEEEEEEcCCCeEEE
Confidence            3555556666555555566666655555555567776655443321112234456677888  89999999988777899


Q ss_pred             eEEEeeCCceeeeeeEEEeccCCcceeEEEEEeeCCC-eEEEeeeccc-eeeeEE
Q 026413          174 SYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK-MVMYFICVLH-MMFAVI  226 (239)
Q Consensus       174 syLQSVTprLsLG~E~~y~~~~~~s~~s~aaRY~~~~-~iasa~l~~~-~~~~sy  226 (239)
                      ||.|.|+++|++|+|+.|....+++.+++++||.-++ .++-|++... -+-+.|
T Consensus       188 Sy~hkvs~~~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~vkakids~g~v~~~~  242 (274)
T cd07303         188 SIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNNSSLVGLGY  242 (274)
T ss_pred             EEEEEcCCceEEEEEEEeeccCCccEEEEEEEEecCCCCEEEEEECCCceEEEEE
Confidence            9999999999999999999777889999999999876 7777888877 344444

The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.

>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]

Probab=97.93  E-value=0.0015  Score=59.71  Aligned_cols=85  Identities=16%  Similarity=0.208  Sum_probs=67.0

Q ss_pred             cceeEEEEEEecCceEEEEEEeCCCeeEEeEEEeeCCceeeeeeEEEeccCCcceeEEEEEeeCCC-eEEEeeeccc-ee
Q 026413          145 MSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK-MVMYFICVLH-MM  222 (239)
Q Consensus       145 ~~~~q~e~Dy~G~d~taslK~~n~~~~~~syLQSVTprLsLG~E~~y~~~~~~s~~s~aaRY~~~~-~iasa~l~~~-~~  222 (239)
                      ....-+.+-|..+|+++.+++.|...+.+++-|.|..++..|.++.|.+......+++++||.-+. ..+-|.+..- -+
T Consensus       163 ~t~~n~~lgy~~~d~~l~~~~nn~~~~~~s~yq~v~~~~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t~VkAKVnn~g~~  242 (281)
T KOG3126|consen  163 LTKYNAALGYTTEDFTLHLNLNNGTEFLASIYQRVNEKLETGANAEWIAGSSNTRFTIGTKYALDPDTSVKAKVNNAGLA  242 (281)
T ss_pred             EeeEEEEEEeecCCcEEEEEecccchhhhhhhhhhcchheeeeeEEEeecCCccEEEEEEEeccCCCceeeeeecCCcee
Confidence            344556788999999999999888778889999999999999999999887788999999998553 5555666644 44


Q ss_pred             eeEEEEE
Q 026413          223 FAVIWSI  229 (239)
Q Consensus       223 ~~sy~~~  229 (239)
                      -+.|-|.
T Consensus       243 gl~yq~~  249 (281)
T KOG3126|consen  243 GLGYQQT  249 (281)
T ss_pred             eEEEEEe
Confidence            4455443

>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes

Probab=97.14  E-value=0.0069  Score=54.75  Aligned_cols=123  Identities=17%  Similarity=0.232  Sum_probs=90.7

Q ss_pred             ceEEEEEec-CCCceeEEEEeecCCCceEEEEEEEcCC---CCcceeEEEEEEecCceEEEEEEeCC-CeeEEeEEEee-
Q 026413          106 KLMLIGRVL-TDGRLNARVKCDLSDNLSLKANAQLTNE---PHMSHGMINFDYKGKDYRTQFQFGNG-ALFGASYIQNV-  179 (239)
Q Consensus       106 k~~l~g~vD-~~G~L~ar~~~~l~~~l~~K~~~ql~~~---~~~~~~q~e~Dy~G~d~taslK~~n~-~~~~~syLQSV-  179 (239)
                      +.++-|+|- +...|+|=+++++++.+.+.+.+--...   +......+-+.+....|...+-.... +++|+-.|... 
T Consensus        84 ~sLlYGRmylP~s~LeAl~ikRlsp~~Ql~~~~vS~~~~~~~~~~~ll~~lQ~dtgk~~~E~lyStd~~L~G~R~L~NFg  163 (260)
T PF12519_consen   84 PSLLYGRMYLPSSRLEALYIKRLSPTTQLLLKAVSSPHSGLPNGGTLLGYLQHDTGKYSQEYLYSTDDALLGFRGLYNFG  163 (260)
T ss_pred             ceEEEEEEecChhhhhhhhhhcCCHhHheeeeeeecccccCCCCCeEEEEEEecCCCCceEEEEEcCCceEEEEEEEecC
Confidence            379999998 5789999999999998766554432211   23445556777777888888766654 46665555521 


Q ss_pred             -------------------------CCceeeeeeEEEeccCCcceeEEEEEee------CCCeEEEeeeccc--eeeeEE
Q 026413          180 -------------------------SPHLSLGGEVFWAGQHRKSGIGYAARYE------NDKMVMYFICVLH--MMFAVI  226 (239)
Q Consensus       180 -------------------------TprLsLG~E~~y~~~~~~s~~s~aaRY~------~~~~iasa~l~~~--~~~~sy  226 (239)
                                               -.+|++|+|+.|.......++|.+.||.      +...++|+++.+-  -+.++|
T Consensus       164 ~~~~~~~~~~~~~~~~~s~~~~~~~~~r~S~GaE~yys~~~ks~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstY  243 (260)
T PF12519_consen  164 PDPSKSNNSPNNSLYNNSRVDEERIYGRFSAGAELYYSALNKSPGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTY  243 (260)
T ss_pred             CCccccccccccccccccccccccccceEeeccEEEEEeeccCCcccceeEEEecCCCCCCCeEEEEEeccccccchhee
Confidence                                     1199999999999888889999999994      4569999999988  666777


Q ss_pred             EE
Q 026413          227 WS  228 (239)
Q Consensus       227 ~~  228 (239)
                      =-
T Consensus       244 s~  245 (260)
T PF12519_consen  244 SV  245 (260)
T ss_pred             ee
Confidence            43

Proteins in this family are typically between 415 and 473 amino acids in length.

>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.98  E-value=0.051  Score=50.31  Aligned_cols=98  Identities=16%  Similarity=0.182  Sum_probs=58.6

Q ss_pred             CCceeEEEEeecCCCceEEEEEEEcC--CCCcceeEEEEEEecCceEEEEEEeCCCeeEEeEEEeeCCceeeeeeEEEec
Q 026413          116 DGRLNARVKCDLSDNLSLKANAQLTN--EPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAG  193 (239)
Q Consensus       116 ~G~L~ar~~~~l~~~l~~K~~~ql~~--~~~~~~~q~e~Dy~G~d~taslK~~n~~~~~~syLQSVTprLsLG~E~~y~~  193 (239)
                      .|.+-+.++..++++|.+-..+-...  ++.....-+-.-|.-.+|.+.+.++-.+ ..+.|-|.+.++++.|.|+-+-+
T Consensus       162 sgi~v~~~lqsvT~~LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~~g-~~~~y~~r~~~~~~~~ve~~~~~  240 (308)
T KOG3296|consen  162 SGIYVASYLQSVTPRLSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQQG-LTGTYYQRAVEKLQMGVEFETNT  240 (308)
T ss_pred             chHHHHHHHhhhcccccccceeEeccCCCccccceeeeeeeeecceeeEEeccccc-ceehhhhhhhhhhccceeEeeec
Confidence            34444445555555555433332222  1122222234466666777777776666 44599999999999999999987


Q ss_pred             cCC--cceeEEEEEeeCCCeEEE
Q 026413          194 QHR--KSGIGYAARYENDKMVMY  214 (239)
Q Consensus       194 ~~~--~s~~s~aaRY~~~~~ias  214 (239)
                      .-+  +..++|..+|...+.++=
T Consensus       241 ~~~~~~~t~a~~~~l~~~~s~~r  263 (308)
T KOG3296|consen  241 RLQSTDVTAAYGYDLPTAQSVFR  263 (308)
T ss_pred             ccCCcceEEEEEeeccCccceEE
Confidence            644  456777777755443333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
3emn_X	295	Voltage-dependent anion-selective channel protein;	6e-11

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A Length = 295

 Score = 60.2 bits (145), Expect = 6e-11
 Identities = 28/202 (13%), Positives = 58/202 (28%), Gaps = 17/202 (8%)

Query: 23  EEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIP 82
                + ++  P  Y ++ + A               +  GL  K  L      G  E  
Sbjct: 5   HHHHHHGSMAVPPTYADLGKSARDVFTK--------GYGFGL-IKLDLKTKSENGL-EFT 54

Query: 83  SQSTETIKIPTAHYEFGANYIDPK--LMLIGRVLTDGRLNARVKCD--LSDNLSLKANAQ 138
           S  +   +    +      Y   +  L    +  TD  L   +  +  L+  L L  ++ 
Sbjct: 55  SSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSS 114

Query: 139 LTNEPHMSHGMINFDYKGKDYRTQFQFGNGALFGASYIQNV--SPHLSLGGEV-FWAGQH 195
            +      +  I   YK +               +     V        G ++ F   + 
Sbjct: 115 FSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKS 174

Query: 196 RKSGIGYAARYENDKMVMYFIC 217
           R +   +A  Y+ D+  ++   
Sbjct: 175 RVTQSNFAVGYKTDEFQLHTNV 196

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
3emn_X	295	Voltage-dependent anion-selective channel protein;	99.42
3emn_X	295	Voltage-dependent anion-selective channel protein;	98.89

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=99.42  E-value=1e-10  Score=105.53  Aligned_cols=189  Identities=13%  Similarity=0.166  Sum_probs=137.3

Q ss_pred             CCCCCCCCHHHHHHHHhhccC-ccccceEEEEecccCCCCeeeEEEEEeCCCCCCCCCccccccCCcceEEeEEEeCCc-
Q 026413           29 MNLPCPIPYEEIHREALMSLK-PELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK-  106 (239)
Q Consensus        29 ~~L~nPG~~E~l~re~k~~l~-~~~FeG~R~dv~K~ls~~FqvsHs~~lgs~~~p~~~~~~~k~p~~~Y~fga~y~~~k-  106 (239)
                      ...-+|+.|-||-|.+|++|. .+.|+..+||+.-.-++-+.++=+-.-....           ..-.=.+.+.|...+ 
T Consensus        11 ~~~~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~-----------~~v~g~le~kyk~~~~   79 (295)
T 3emn_X           11 GSMAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTET-----------TKVNGSLETKYRWTEY   79 (295)
T ss_dssp             --CCSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTT-----------CCEEEEEEEEEEETTT
T ss_pred             CCcCCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCC-----------CceeeEEEEEEEecCC
Confidence            356789999999999998764 4677779999976544433333222211100           011346777887776 


Q ss_pred             -eEEEEEecCCCceeEEEEee--cCCCceEEEEEEEcCCCCcceeEEEEEEecCceEEEEE--E--eCCCeeEEeEEEee
Q 026413          107 -LMLIGRVLTDGRLNARVKCD--LSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQ--F--GNGALFGASYIQNV  179 (239)
Q Consensus       107 -~~l~g~vD~~G~L~ar~~~~--l~~~l~~K~~~ql~~~~~~~~~q~e~Dy~G~d~taslK--~--~n~~~~~~syLQSV  179 (239)
                       +.+-=.+|++++|...+...  +.+.+.+-+.+.+.++......+++++|+.+++++...  +  .||.+...-.+  -
T Consensus        80 g~t~~~kw~t~n~l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~--g  157 (295)
T 3emn_X           80 GLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVL--G  157 (295)
T ss_dssp             TEEEEEEEETTSCEEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEE--E
T ss_pred             cEEEEEEEeCCCcEEEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEE--e
Confidence             56666999999999887654  78888877777775543344688999999999999543  3  66754332222  3


Q ss_pred             CCceeeeeeEEEeccCC-cceeEEEEEeeCCCeEEEeeeccc-eeeeEEEEEc
Q 026413          180 SPHLSLGGEVFWAGQHR-KSGIGYAARYENDKMVMYFICVLH-MMFAVIWSIT  230 (239)
Q Consensus       180 TprLsLG~E~~y~~~~~-~s~~s~aaRY~~~~~iasa~l~~~-~~~~sy~~~~  230 (239)
                      +|+|++|+|+.|..... .+..++++||..++|+++++++.. .+.+||||.-
T Consensus       158 ~~~~~~G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~~~~~~aSy~qkv  210 (295)
T 3emn_X          158 YEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKV  210 (295)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEETTTEEEEEEEEEC
T ss_pred             eCCEEEEEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECCCCeEEEEEEEEC
Confidence            69999999999998644 467999999999999999999875 9999999975

>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A

Probab=98.89  E-value=5.6e-07  Score=81.02  Aligned_cols=135  Identities=13%  Similarity=0.190  Sum_probs=104.3

Q ss_pred             ceEEeEEEeCCceEEEEEecCC-C--ceeEEEEeecCCCceEEEEEEEcC-CCCcceeEEEEEEecCceEEEEEEeCCCe
Q 026413           95 HYEFGANYIDPKLMLIGRVLTD-G--RLNARVKCDLSDNLSLKANAQLTN-EPHMSHGMINFDYKGKDYRTQFQFGNGAL  170 (239)
Q Consensus        95 ~Y~fga~y~~~k~~l~g~vD~~-G--~L~ar~~~~l~~~l~~K~~~ql~~-~~~~~~~q~e~Dy~G~d~taslK~~n~~~  170 (239)
                      .-++.+.|..+..-+-++||-+ .  .+++..... .++|.+=..+...- ........+-+.|+++||++++++.|+..
T Consensus       123 s~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g-~~~~~~G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~~~~  201 (295)
T 3emn_X          123 NAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG-YEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTE  201 (295)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEETTTE
T ss_pred             ceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe-eCCEEEEEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECCCCe
Confidence            5688888998887776666552 1  333332221 36666555544332 22345667889999999999999999888


Q ss_pred             eEEeEEEeeCCceeeeeeEEEeccCCcceeEEEEEeeC-CCeEEEeeeccc-eeeeEEEEEc
Q 026413          171 FGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYEN-DKMVMYFICVLH-MMFAVIWSIT  230 (239)
Q Consensus       171 ~~~syLQSVTprLsLG~E~~y~~~~~~s~~s~aaRY~~-~~~iasa~l~~~-~~~~sy~~~~  230 (239)
                      +.+||.|.|++++++|+|+.|....++..+++++||.- +++++-|++... -+-+.|++.-
T Consensus       202 ~~aSy~qkvs~~~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakvn~~g~v~~~y~~kl  263 (295)
T 3emn_X          202 FGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTL  263 (295)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEEETTSEEEEEEEEEE
T ss_pred             EEEEEEEECCCceEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEECCCCEEEEEEEEec
Confidence            99999999999999999999998778899999999987 589999999998 7888887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00