Citrus Sinensis ID: 026548

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MNEEMSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCSC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHccccccccHHHcccccccHHHcEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
mneemsgdatdhrhqqqenmipdkidYVFKVVVIGdsavgksqilsrftknefffdskstigvefqtRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAedqglffseasalngdnvDTAFFRLLQEIYGAVSkkelecgngkvdgppmlagskidvisgaDLEIsemkklstcsc
Flexible Loop (DISEMBL)
mneemsgdatdhrhqqqenmipdKIDYVFKVVVIGDSAVgksqilsrftknefffdskstigvefqtrtvtingkiikaqiwdtagQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELrahadssiriiLIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEisemkklstcsc
Low Complexity Region (SEG)
MNEEMSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCSC
Disordered region (IsUnstruct)
*********************PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKV**********IDVI******************
Disordered Region (DISOPRED)
************************IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY****************************************KLSTCSC
Disordered Region (DISEMBL)
****************QENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEM********
Disordered Region (DISPRO)
*******************MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKE****************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNEEMSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q9LNK1	237	Ras-related protein RABA3	yes	no	0.987	0.987	0.695	9e-91
Q9FJN8	226	Ras-related protein RABA4	no	no	0.839	0.880	0.675	1e-74
Q9SMQ6	224	Ras-related protein RABA4	no	no	0.877	0.928	0.655	5e-74
Q40522	222	Ras-related protein Rab11	N/A	no	0.886	0.945	0.635	3e-72
Q40191	226	Ras-related protein Rab11	N/A	no	0.877	0.920	0.652	5e-72
P25766	226	Ras-related protein RGP1	no	no	0.890	0.933	0.642	2e-71
Q9FE79	223	Ras-related protein RABA4	no	no	0.848	0.901	0.656	1e-70
Q9LH50	222	Ras-related protein RABA4	no	no	0.831	0.887	0.646	4e-70
Q40520	222	Ras-related protein Rab11	N/A	no	0.822	0.878	0.653	3e-69
Q9SN35	214	Ras-related protein RABA1	no	no	0.869	0.962	0.565	1e-64

>sp|Q9LNK1|RABA3_ARATH Ras-related protein RABA3 OS=Arabidopsis thaliana GN=RABA3 PE=2 SV=1

 Score =  333 bits (853), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 167/240 (69%), Positives = 197/240 (82%), Gaps = 6/240 (2%)

Query: 1   MNEEMSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST 60
           MNEEMSG++ ++    ++  +P+KIDYVFKVVVIGDSAVGK+Q+LSRFT NEF +DSKST
Sbjct: 1   MNEEMSGESPENNKHVKKPTMPEKIDYVFKVVVIGDSAVGKTQLLSRFTHNEFCYDSKST 60

Query: 61  IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
           IGVEFQTRT+T+ GK++KAQIWDTAGQERYRAVTSAYYRGALGA+VVYDITKR SFDHVA
Sbjct: 61  IGVEFQTRTITLRGKLVKAQIWDTAGQERYRAVTSAYYRGALGAMVVYDITKRLSFDHVA 120

Query: 121 RWVEELRAHADSSIRIILIGNKSDL-VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179
           RWVEELRAHAD S  I+L+GNK+DL V  RAV  EDAVEFAE Q LFFSE SAL+G NVD
Sbjct: 121 RWVEELRAHADDSAVIMLVGNKADLSVGKRAVPTEDAVEFAETQRLFFSEVSALSGGNVD 180

Query: 180 TAFFRLLQEIYG--AVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCSC 237
            AFFRLL+EI+    VS+K +E   G       L GS+IDVISG+DLE S +K+ ++CSC
Sbjct: 181 EAFFRLLEEIFSRVVVSRKAMESDGG---ATVKLDGSRIDVISGSDLETSNIKEQASCSC 237

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJN8|RAA4A_ARATH Ras-related protein RABA4a OS=Arabidopsis thaliana GN=RABA4A PE=2 SV=1

 Score =  279 bits (713), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/200 (67%), Positives = 163/200 (81%), Gaps = 1/200 (0%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
           KIDYVFKVV+IGDSAVGKSQIL+R+ ++EF  DSK+TIGVEFQTRT+ I+ K +KAQIWD
Sbjct: 13  KIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSVKAQIWD 72

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYDIT+RQ+FDH+ RW+EELRAHAD +I IILIGNKS
Sbjct: 73  TAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVIILIGNKS 132

Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203
           DLVD RA+  EDA EFAE +GLFF E SA N  NV++AF  +L EI+  V+KK L     
Sbjct: 133 DLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKKSLAASED 192

Query: 204 KVDGPP-MLAGSKIDVISGA 222
           + +G P  LAG KID++ G 
Sbjct: 193 QENGNPGSLAGKKIDIVPGP 212

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMQ6|RAA4B_ARATH Ras-related protein RABA4b OS=Arabidopsis thaliana GN=RABA4B PE=2 SV=1

 Score =  277 bits (708), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 139/212 (65%), Positives = 167/212 (78%), Gaps = 4/212 (1%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
           K+DYVFKVV+IGDSAVGKSQ+L+RF ++EF  DSK+TIGVEFQTRT++I  K IKAQIWD
Sbjct: 13  KVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSIKAQIWD 72

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYD+TKR++F+H+ RW+EELRAHAD +I IILIGNKS
Sbjct: 73  TAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVIILIGNKS 132

Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203
           DL D RAV  EDA EFAE +GLFF E SALN  NV+ +F  L+ +IY  V+KK L    G
Sbjct: 133 DLEDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKNL-ASEG 191

Query: 204 KVDGPPMLAGSKIDVISGADLEISEMKKLSTC 235
             + P  LAG KI +I G+  EI    K STC
Sbjct: 192 DSNNPGSLAGKKI-LIPGSGQEIP--AKTSTC 220

Regulator of membrane trafficking. May be required for secretion of cell wall components in cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40522|RB11D_TOBAC Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1

 Score =  271 bits (693), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 136/214 (63%), Positives = 165/214 (77%), Gaps = 4/214 (1%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
           KIDYVFKVV+IGDSAVGKSQIL+RF +NEF  DSK+TIGVEFQTRT+ I  K +KAQIWD
Sbjct: 11  KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWD 70

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYDITKRQ+FDH+ RW+EELRAHAD +I I+LIGNK+
Sbjct: 71  TAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKT 130

Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203
           DL D RAV  EDA EFA+ +GLFF E SA+   N++ AF  +L EI+  V+KK L   + 
Sbjct: 131 DLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDN 190

Query: 204 KVDG-PPMLAGSKIDVISGADLEISEMKKLSTCS 236
           + +G P  L G KI ++ G    I E K  + CS
Sbjct: 191 QSNGNPASLTGKKI-LVPGPGQVIPEKK--ACCS 221

Nicotiana tabacum (taxid: 4097)

>sp|Q40191|RB11A_LOTJA Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1

 Score =  270 bits (691), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 137/210 (65%), Positives = 162/210 (77%), Gaps = 2/210 (0%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
           KIDYVFKVV+IGDSAVGKSQIL+RF +NEF  DSKSTIGVEFQTRT+ I+ K +KAQIWD
Sbjct: 13  KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWD 72

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYDITKRQ+FDH+ RW+EELR HAD +I IILIGNK 
Sbjct: 73  TAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKC 132

Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203
           DLV+ R V  EDA EFAE +GLFF E SAL   NV++AF  +L EIY  V+KK L     
Sbjct: 133 DLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADES 192

Query: 204 KVDG-PPMLAGSKIDVISGADLEISEMKKL 232
           + +G    L+G KI +I G   EI   + +
Sbjct: 193 QGNGNSASLSGQKI-IIPGPAQEIPAKRNM 221

Lotus japonicus (taxid: 34305)

>sp|P25766|RLGP1_ORYSJ Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2

 Score =  268 bits (686), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 140/218 (64%), Positives = 165/218 (75%), Gaps = 7/218 (3%)

Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ 80
           +  KIDYVFKVV+IGDSAVGKSQ+L+RF +NEF  DSK+TIGVEFQTRT+ I+ + +KAQ
Sbjct: 11  VGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQ 70

Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIG 140
           IWDTAGQERYRAVTSAYYRGA+GA++VYDITKRQSFDHVARW+EELR HAD +I I+LIG
Sbjct: 71  IWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIG 130

Query: 141 NKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELEC 200
           NKSDL  +R V  EDA EFAE + LFF E SAL   NV+ AF  +L EIY  VSKK L  
Sbjct: 131 NKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNL-V 189

Query: 201 GNGKVD---GPPMLAGSKIDVISGADLEISEMKKLSTC 235
            N +VD      +L G+KI V+ G   E +   K S C
Sbjct: 190 ANEEVDSSGNSSLLKGTKI-VVPGQ--EPAPPTKASCC 224

May play an important role in plant growth and development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FE79|RAA4C_ARATH Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1

 Score =  266 bits (679), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 134/204 (65%), Positives = 163/204 (79%), Gaps = 3/204 (1%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
           KIDYVFKVV+IGDSAVGKSQ+L+RF++NEF  +SK+TIGVEFQTRT+ I+ K IKAQIWD
Sbjct: 11  KIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEIDRKTIKAQIWD 70

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYDITKRQSFDHVARW+EELR HAD +I I+LIGNK+
Sbjct: 71  TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKT 130

Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203
           DL  +RAV  EDA EFA+ + LFF E SAL+ +NV+ +F  +L EIY  VSKK L     
Sbjct: 131 DLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKKNLVANEE 190

Query: 204 KVDG--PPMLAGSKIDVISGADLE 225
              G    +L G+KI V++G + E
Sbjct: 191 GESGGDSSLLQGTKI-VVAGEETE 213

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LH50|RAA4D_ARATH Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1

 Score =  264 bits (675), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/198 (64%), Positives = 158/198 (79%), Gaps = 1/198 (0%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
           KIDYVFKVV+IGDSAVGK+Q+L+RF +NEF  DSK+TIGVEFQT+T+ I+ K +KAQIWD
Sbjct: 11  KIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVIDNKTVKAQIWD 70

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYD+TKRQSFDH+A+W+EELR HAD +I I+LIGNK 
Sbjct: 71  TAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKNIVIMLIGNKC 130

Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203
           DL  +RAV  EDA EFA+ + LFF E SAL   NV+TAF  +L EIY  +SKK L   + 
Sbjct: 131 DLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKSLTADDD 190

Query: 204 KVDG-PPMLAGSKIDVIS 220
             DG   +L G++I + S
Sbjct: 191 DADGNSSLLKGTRIIIPS 208

Intracellular vesicle trafficking and protein transport. Plays an important role in the regulation of pollen tube tip growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40520|RB11C_TOBAC Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1

 Score =  261 bits (666), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/196 (65%), Positives = 152/196 (77%), Gaps = 1/196 (0%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
           KIDYVFKVV+IGDSAVGK+QIL+RF +NEF  DSK+TIGVEFQTRT+ I  K +KAQIWD
Sbjct: 11  KIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWD 70

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYDITKRQ+FDH+ RW+EELRAHAD +I I+L GNK+
Sbjct: 71  TAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKT 130

Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECG-N 202
           DL D RAV  EDA EFA+ +GLFF E SA+    ++ AF  +L EI+  V+KK L    N
Sbjct: 131 DLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADEN 190

Query: 203 GKVDGPPMLAGSKIDV 218
                P  L G KI V
Sbjct: 191 QSNSNPASLTGKKILV 206

Nicotiana tabacum (taxid: 4097)

>sp|Q9SN35|RAA1D_ARATH Ras-related protein RABA1d OS=Arabidopsis thaliana GN=RABA1D PE=2 SV=1

 Score =  246 bits (627), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 121/214 (56%), Positives = 156/214 (72%), Gaps = 8/214 (3%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
           D  DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ +N K+IKAQIW
Sbjct: 8   DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEKVIKAQIW 67

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
           DTAGQERYRA+TSAYYRGA+GA++VYD+T+  +F++V RW+ ELR H D +I ++L+GNK
Sbjct: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLVGNK 127

Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 202
           SDL  + AV  EDA  FAE++ L+F E SAL   NV+ AF  +L +IY  VSKK +E G 
Sbjct: 128 SDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSKKAMEAGE 187

Query: 203 GKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS 236
              + P    G KIDV      ++S +KK   CS
Sbjct: 188 DSGNVPS--KGEKIDV------DVSAVKKTGCCS 213

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
255585255	231	protein with unknown function [Ricinus c	0.966	0.991	0.794	1e-103
296088976	239	unnamed protein product [Vitis vinifera]	0.991	0.983	0.780	1e-101
359489460	235	PREDICTED: ras-related protein RABA3-lik	0.970	0.978	0.790	1e-100
358248878	236	uncharacterized protein LOC100787725 [Gl	0.983	0.987	0.762	1e-100
356520251	245	PREDICTED: ras-related protein RABA3-lik	1.0	0.967	0.742	5e-99
356573249	236	PREDICTED: ras-related protein RABA3-lik	0.983	0.987	0.75	1e-98
356559913	244	PREDICTED: ras-related protein RABA3-lik	1.0	0.971	0.741	2e-98
255644772	236	unknown [Glycine max]	0.983	0.987	0.745	8e-98
224127991	219	predicted protein [Populus trichocarpa]	0.915	0.990	0.808	1e-96
1370144	242	RAB11B [Lotus japonicus]	0.995	0.975	0.745	4e-96

>gi|255585255|ref|XP_002533328.1| protein with unknown function [Ricinus communis] gi|223526833|gb|EEF29049.1| protein with unknown function [Ricinus communis]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/239 (79%), Positives = 208/239 (87%), Gaps = 10/239 (4%)

Query: 1   MNEEMSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST 60
           MN+EM+GD        QEN+  +KIDYVFKVVVIGDSAVGK+Q+LSRFTKNEF FDSKST
Sbjct: 1   MNQEMNGD-------DQENL-QEKIDYVFKVVVIGDSAVGKTQLLSRFTKNEFCFDSKST 52

Query: 61  IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
           IGVEFQTRTVTI GK++KAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKR +FDHVA
Sbjct: 53  IGVEFQTRTVTIKGKVVKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRATFDHVA 112

Query: 121 RWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT 180
           RWVEELRAHAD+SI I LIGNK+DLVD RAV  EDAVEFAEDQGLFFSE SAL+GDNVD 
Sbjct: 113 RWVEELRAHADNSIVITLIGNKADLVDQRAVPTEDAVEFAEDQGLFFSETSALSGDNVDR 172

Query: 181 AFFRLLQEIYGAVSKKELECGNGKVDGPP--MLAGSKIDVISGADLEISEMKKLSTCSC 237
           AFFRLL+EIYG +SKK LECG  K +G    ML GSKIDVISG+DLEISEMKKLS CSC
Sbjct: 173 AFFRLLEEIYGVISKKSLECGGHKTNGADSVMLRGSKIDVISGSDLEISEMKKLSACSC 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088976|emb|CBI38679.3| unnamed protein product [Vitis vinifera]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/241 (78%), Positives = 211/241 (87%), Gaps = 6/241 (2%)

Query: 1   MNEEMSGDAT--DHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK 58
           M +EM+G  +  D  HQ QEN   +KIDYVFKVVVIGDSAVGK+QILSRFTKNEF FDSK
Sbjct: 1   MKDEMNGAGSHGDQSHQNQENG-HEKIDYVFKVVVIGDSAVGKTQILSRFTKNEFCFDSK 59

Query: 59  STIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH 118
           STIGVEFQTRTVTI  K+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQ+FDH
Sbjct: 60  STIGVEFQTRTVTIKSKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQTFDH 119

Query: 119 VARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178
           VARWVEELRAHAD+SI I+L+GNK+DLVD RAV +EDAVEF+EDQGLFFSE SALNGDNV
Sbjct: 120 VARWVEELRAHADTSIVIMLVGNKADLVDQRAVPSEDAVEFSEDQGLFFSETSALNGDNV 179

Query: 179 DTAFFRLLQEIYGAVSKKELECGNGKVDG--PPMLAGSKIDVISGADLEISEMKKLSTCS 236
           +TAFFR+L+EIYG VSKK LEC +GK +G     L GSKIDVIS +DLEISE+KKLS C+
Sbjct: 180 ETAFFRVLEEIYGVVSKKALEC-DGKSNGCDASNLKGSKIDVISASDLEISEVKKLSACT 238

Query: 237 C 237
           C
Sbjct: 239 C 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489460|ref|XP_002262618.2| PREDICTED: ras-related protein RABA3-like [Vitis vinifera]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/234 (79%), Positives = 206/234 (88%), Gaps = 4/234 (1%)

Query: 6   SGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEF 65
           +G   D  HQ QEN   +KIDYVFKVVVIGDSAVGK+QILSRFTKNEF FDSKSTIGVEF
Sbjct: 4   AGSHGDQSHQNQENG-HEKIDYVFKVVVIGDSAVGKTQILSRFTKNEFCFDSKSTIGVEF 62

Query: 66  QTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE 125
           QTRTVTI  K+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQ+FDHVARWVEE
Sbjct: 63  QTRTVTIKSKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQTFDHVARWVEE 122

Query: 126 LRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
           LRAHAD+SI I+L+GNK+DLVD RAV +EDAVEF+EDQGLFFSE SALNGDNV+TAFFR+
Sbjct: 123 LRAHADTSIVIMLVGNKADLVDQRAVPSEDAVEFSEDQGLFFSETSALNGDNVETAFFRV 182

Query: 186 LQEIYGAVSKKELECGNGKVDG--PPMLAGSKIDVISGADLEISEMKKLSTCSC 237
           L+EIYG VSKK LEC +GK +G     L GSKIDVIS +DLEISE+KKLS C+C
Sbjct: 183 LEEIYGVVSKKALEC-DGKSNGCDASNLKGSKIDVISASDLEISEVKKLSACTC 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248878|ref|NP_001239700.1| uncharacterized protein LOC100787725 [Glycine max] gi|255639774|gb|ACU20180.1| unknown [Glycine max]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/240 (76%), Positives = 210/240 (87%), Gaps = 7/240 (2%)

Query: 1   MNEEMSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST 60
           MN+EM+G       ++ +  + DKIDYVFKVVVIGDSAVGK+QILSRF KNEF FDSKST
Sbjct: 1   MNQEMNGVEA----ERVKVNVHDKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKST 56

Query: 61  IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
           IGVEFQTRTVTINGK+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDI+KRQSFDHVA
Sbjct: 57  IGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDISKRQSFDHVA 116

Query: 121 RWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT 180
           RWV+ELRAHADSSI I+LIGNK DLVD R V AEDAVEFAEDQGLFFSE SAL+G+NV++
Sbjct: 117 RWVDELRAHADSSIVIMLIGNKGDLVDQRVVHAEDAVEFAEDQGLFFSETSALSGENVES 176

Query: 181 AFFRLLQEIYGAVSKKELECGNGKVDGPPMLA---GSKIDVISGADLEISEMKKLSTCSC 237
           AFF+LL+EI+  +SK+ LECGNGK +    LA   GSKIDVISGA+LEI++MKKLS+CSC
Sbjct: 177 AFFKLLEEIHRVISKRSLECGNGKANADNNLATLKGSKIDVISGAELEITDMKKLSSCSC 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520251|ref|XP_003528777.1| PREDICTED: ras-related protein RABA3-like [Glycine max]

 Score =  366 bits (939), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 182/245 (74%), Positives = 208/245 (84%), Gaps = 8/245 (3%)

Query: 1   MNEEMSGDATDHR----HQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD 56
           MN+EM+G   + R    H++ +  + +KIDYVFKVVVIGDSAVGK+QILSRF KNEF FD
Sbjct: 1   MNQEMNGVEAEKRQENGHEKVDYDVQEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFD 60

Query: 57  SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF 116
           SKSTIGVEFQTRTVTINGK+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQSF
Sbjct: 61  SKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSF 120

Query: 117 DHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD 176
           DHVARWVEELRAHADSSI I+L+GNK+DLVD R V  EDAVEFAEDQGLFFSE SAL+GD
Sbjct: 121 DHVARWVEELRAHADSSIVIMLVGNKADLVDQRMVPTEDAVEFAEDQGLFFSETSALSGD 180

Query: 177 NVDTAFFRLLQEIYGAVSKKELECGNGKVDGP----PMLAGSKIDVISGADLEISEMKKL 232
           NV++AF +LL+EI   VSKK LECG GK +G       L G+K+D+I G +LEISEMKKL
Sbjct: 181 NVESAFLKLLEEINRVVSKKALECGYGKENGDNNVVASLNGTKVDIILGPELEISEMKKL 240

Query: 233 STCSC 237
           S+CSC
Sbjct: 241 SSCSC 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573249|ref|XP_003554775.1| PREDICTED: ras-related protein RABA3-like [Glycine max]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 180/240 (75%), Positives = 208/240 (86%), Gaps = 7/240 (2%)

Query: 1   MNEEMSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST 60
           MN+EM+G       ++ +  + DKIDYVFKVVVIGDSAVGK+QILSRF KNEF F+SKST
Sbjct: 1   MNQEMNGVEA----ERVKVNVHDKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFNSKST 56

Query: 61  IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
           IGVEFQTR+VTINGK+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQSFDHVA
Sbjct: 57  IGVEFQTRSVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVA 116

Query: 121 RWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT 180
           RWV+ELRAHADSSI I+LIGNK DLVD R V AEDAVEFAEDQGLFFSE SAL+G+NV++
Sbjct: 117 RWVDELRAHADSSIVIMLIGNKGDLVDQRVVHAEDAVEFAEDQGLFFSETSALSGENVES 176

Query: 181 AFFRLLQEIYGAVSKKELECGNGKVDGP---PMLAGSKIDVISGADLEISEMKKLSTCSC 237
           +FF+LL+EI+  +SK+ LEC NGK +       L GSKIDVISGA+LEI+EMKKLS+CSC
Sbjct: 177 SFFKLLEEIHRVISKRSLECDNGKANADNNVATLKGSKIDVISGAELEIAEMKKLSSCSC 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559913|ref|XP_003548240.1| PREDICTED: ras-related protein RABA3-like [Glycine max]

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/244 (74%), Positives = 207/244 (84%), Gaps = 7/244 (2%)

Query: 1   MNEEMSGDATDHR----HQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD 56
           MN EM+G   + R    H++ +  + +KIDYVFKVVVIGDSAVGK+QILSRF KNEF FD
Sbjct: 1   MNPEMNGVEAEKRQENGHEKVDYDVQEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFD 60

Query: 57  SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF 116
           SKSTIGVEFQTRTVTIN K+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQSF
Sbjct: 61  SKSTIGVEFQTRTVTINAKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSF 120

Query: 117 DHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD 176
           DHVARWVEELRAHADSSI I+L+GNK+DLVD R V  EDAVEFAEDQGLFFSE SAL+GD
Sbjct: 121 DHVARWVEELRAHADSSIVIMLVGNKADLVDQRMVPTEDAVEFAEDQGLFFSETSALSGD 180

Query: 177 NVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLA---GSKIDVISGADLEISEMKKLS 233
           NV++AF +LL+EI   VSKK LECG GK +G   +A   G+K+D+I G +LEISEMKKLS
Sbjct: 181 NVESAFLKLLEEINRVVSKKALECGLGKENGDTNVASLKGTKVDIILGPELEISEMKKLS 240

Query: 234 TCSC 237
           +CSC
Sbjct: 241 SCSC 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644772|gb|ACU22888.1| unknown [Glycine max]

 Score =  362 bits (929), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 179/240 (74%), Positives = 207/240 (86%), Gaps = 7/240 (2%)

Query: 1   MNEEMSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST 60
           MN+EM+G       ++ +  + DKIDYVFKVVVIGDSAVGK+QILSRF KNEF F+SKST
Sbjct: 1   MNQEMNGVEA----ERVKVNVHDKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFNSKST 56

Query: 61  IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
           IGVEFQTR+VTINGK+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQSFDHVA
Sbjct: 57  IGVEFQTRSVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVA 116

Query: 121 RWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT 180
           RWV+ELRAHADSSI I+LIGNK DLVD R V AEDAVEFAEDQGLFFSE SAL+G+NV++
Sbjct: 117 RWVDELRAHADSSIVIMLIGNKGDLVDQRVVHAEDAVEFAEDQGLFFSETSALSGENVES 176

Query: 181 AFFRLLQEIYGAVSKKELECGNGKVDGP---PMLAGSKIDVISGADLEISEMKKLSTCSC 237
           +FF+LL+EI+  +SK+ LEC NGK +       L GSKIDVISGA+LEI+EMKK S+CSC
Sbjct: 177 SFFKLLEEIHRVISKRSLECDNGKANADNNVATLKGSKIDVISGAELEIAEMKKSSSCSC 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127991|ref|XP_002320214.1| predicted protein [Populus trichocarpa] gi|222860987|gb|EEE98529.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 177/219 (80%), Positives = 192/219 (87%), Gaps = 2/219 (0%)

Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ 80
           + +KIDYVFKVVVIGDSAVGK+QILSRFTKNEF FDSKSTIGVEFQTRTV I  K+IKAQ
Sbjct: 1   VQEKIDYVFKVVVIGDSAVGKTQILSRFTKNEFCFDSKSTIGVEFQTRTVIIKDKVIKAQ 60

Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIG 140
           IWDTAGQERYRAVTSAYYRGALGA++VYDITKR +FDHVARWVEELRAHAD+SI I+LIG
Sbjct: 61  IWDTAGQERYRAVTSAYYRGALGAMLVYDITKRPTFDHVARWVEELRAHADNSIVIMLIG 120

Query: 141 NKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELEC 200
           NK+DLVD+RAV  EDAVEFAE+QGLFFSE SAL+GDNVD AFFRLL+EIYG + KK LEC
Sbjct: 121 NKADLVDLRAVPTEDAVEFAEEQGLFFSETSALSGDNVDGAFFRLLEEIYGVICKKSLEC 180

Query: 201 GNGKVDGPP--MLAGSKIDVISGADLEISEMKKLSTCSC 237
           GNG         L GSKID ISG DLEISEMKKLS CSC
Sbjct: 181 GNGNPHAADAITLRGSKIDGISGTDLEISEMKKLSACSC 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370144|emb|CAA98178.1| RAB11B [Lotus japonicus]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 179/240 (74%), Positives = 206/240 (85%), Gaps = 4/240 (1%)

Query: 1   MNEEMSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST 60
           MN+EM+G   +  H Q++N + DKIDYVFKVVVIGDSAVGK+QILSRF KNEF FDSK+T
Sbjct: 1   MNQEMNGVEAEKLHLQEKN-VHDKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKAT 59

Query: 61  IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
           IGVEFQTRTVTIN K+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQSFDHVA
Sbjct: 60  IGVEFQTRTVTINAKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVA 119

Query: 121 RWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT 180
           RWVEELRAHADSSI I+LIGNK DLVD R V +EDAVEFAE+QGLFFSE SAL G+NV++
Sbjct: 120 RWVEELRAHADSSIVIMLIGNKGDLVDQRVVLSEDAVEFAEEQGLFFSETSALTGENVES 179

Query: 181 AFFRLLQEIYG-AVSKKEL-ECGNG-KVDGPPMLAGSKIDVISGADLEISEMKKLSTCSC 237
           AF +LLQEI    VSK+ L +C +G K +G   L GSKIDVISG +LEI+E+KK+ +CSC
Sbjct: 180 AFLKLLQEINTRVVSKRSLSDCNHGKKTNGGNSLKGSKIDVISGPELEITEVKKVPSCSC 239

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2035302	237	RABA3 "RAB GTPase homolog A3"	0.987	0.987	0.695	2.2e-82
TAIR|locus:2171790	226	RABA4a "RAB GTPase homolog A4A	0.835	0.876	0.678	2.7e-68
TAIR|locus:2140079	224	RABA4B "RAB GTPase homolog A4B	0.877	0.928	0.655	2.4e-67
TAIR|locus:2152753	223	RABA4C "RAB GTPase homolog A4C	0.848	0.901	0.661	5.2e-65
TAIR|locus:2082269	222	RABA4D "RAB GTPase homolog A4D	0.831	0.887	0.646	3.7e-64
TAIR|locus:2124092	214	RABA1d "RAB GTPase homolog A1D	0.869	0.962	0.565	1.3e-59
TAIR|locus:2015576	216	RABA1b "RAB GTPase homolog A1B	0.881	0.967	0.552	2.7e-59
TAIR|locus:2159285	217	RABA1f "RAB GTPase homolog A1F	0.877	0.958	0.562	4.5e-59
TAIR|locus:2086290	217	RABA1g "RAB GTPase homolog A1G	0.881	0.963	0.551	1.9e-58
TAIR|locus:2018698	218	RABA1i "RAB GTPase homolog A1I	0.886	0.963	0.560	2.5e-58

TAIR|locus:2035302 RABA3 "RAB GTPase homolog A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 167/240 (69%), Positives = 197/240 (82%)

Query:     1 MNEEMSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST 60
             MNEEMSG++ ++    ++  +P+KIDYVFKVVVIGDSAVGK+Q+LSRFT NEF +DSKST
Sbjct:     1 MNEEMSGESPENNKHVKKPTMPEKIDYVFKVVVIGDSAVGKTQLLSRFTHNEFCYDSKST 60

Query:    61 IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
             IGVEFQTRT+T+ GK++KAQIWDTAGQERYRAVTSAYYRGALGA+VVYDITKR SFDHVA
Sbjct:    61 IGVEFQTRTITLRGKLVKAQIWDTAGQERYRAVTSAYYRGALGAMVVYDITKRLSFDHVA 120

Query:   121 RWVEELRAHADSSIRIILIGNKSDL-VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179
             RWVEELRAHAD S  I+L+GNK+DL V  RAV  EDAVEFAE Q LFFSE SAL+G NVD
Sbjct:   121 RWVEELRAHADDSAVIMLVGNKADLSVGKRAVPTEDAVEFAETQRLFFSEVSALSGGNVD 180

Query:   180 TAFFRLLQEIYG--AVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCSC 237
              AFFRLL+EI+    VS+K +E   G       L GS+IDVISG+DLE S +K+ ++CSC
Sbjct:   181 EAFFRLLEEIFSRVVVSRKAMESDGGAT---VKLDGSRIDVISGSDLETSNIKEQASCSC 237

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

TAIR|locus:2171790 RABA4a "RAB GTPase homolog A4A" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 135/199 (67%), Positives = 163/199 (81%)

Query:    24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
             KIDYVFKVV+IGDSAVGKSQIL+R+ ++EF  DSK+TIGVEFQTRT+ I+ K +KAQIWD
Sbjct:    13 KIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSVKAQIWD 72

Query:    84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS 143
             TAGQERYRAVTSAYYRGA+GA++VYDIT+RQ+FDH+ RW+EELRAHAD +I IILIGNKS
Sbjct:    73 TAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVIILIGNKS 132

Query:   144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203
             DLVD RA+  EDA EFAE +GLFF E SA N  NV++AF  +L EI+  V+KK L     
Sbjct:   133 DLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKKSLAASED 192

Query:   204 KVDGPP-MLAGSKIDVISG 221
             + +G P  LAG KID++ G
Sbjct:   193 QENGNPGSLAGKKIDIVPG 211

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2140079 RABA4B "RAB GTPase homolog A4B" [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 139/212 (65%), Positives = 167/212 (78%)

Query:    24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
             K+DYVFKVV+IGDSAVGKSQ+L+RF ++EF  DSK+TIGVEFQTRT++I  K IKAQIWD
Sbjct:    13 KVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSIKAQIWD 72

Query:    84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS 143
             TAGQERYRAVTSAYYRGA+GA++VYD+TKR++F+H+ RW+EELRAHAD +I IILIGNKS
Sbjct:    73 TAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVIILIGNKS 132

Query:   144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203
             DL D RAV  EDA EFAE +GLFF E SALN  NV+ +F  L+ +IY  V+KK L    G
Sbjct:   133 DLEDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKNL-ASEG 191

Query:   204 KVDGPPMLAGSKIDVISGADLEISEMKKLSTC 235
               + P  LAG KI +I G+  EI    K STC
Sbjct:   192 DSNNPGSLAGKKI-LIPGSGQEIPA--KTSTC 220

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019900 "kinase binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0032456 "endocytic recycling" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

TAIR|locus:2152753 RABA4C "RAB GTPase homolog A4C" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 135/204 (66%), Positives = 165/204 (80%)

Query:    24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
             KIDYVFKVV+IGDSAVGKSQ+L+RF++NEF  +SK+TIGVEFQTRT+ I+ K IKAQIWD
Sbjct:    11 KIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEIDRKTIKAQIWD 70

Query:    84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS 143
             TAGQERYRAVTSAYYRGA+GA++VYDITKRQSFDHVARW+EELR HAD +I I+LIGNK+
Sbjct:    71 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKT 130

Query:   144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN- 202
             DL  +RAV  EDA EFA+ + LFF E SAL+ +NV+ +F  +L EIY  VSKK L     
Sbjct:   131 DLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKKNLVANEE 190

Query:   203 GKVDGPP-MLAGSKIDVISGADLE 225
             G+  G   +L G+KI V++G + E
Sbjct:   191 GESGGDSSLLQGTKI-VVAGEETE 213

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2082269 RABA4D "RAB GTPase homolog A4D" [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 128/198 (64%), Positives = 158/198 (79%)

Query:    24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
             KIDYVFKVV+IGDSAVGK+Q+L+RF +NEF  DSK+TIGVEFQT+T+ I+ K +KAQIWD
Sbjct:    11 KIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVIDNKTVKAQIWD 70

Query:    84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS 143
             TAGQERYRAVTSAYYRGA+GA++VYD+TKRQSFDH+A+W+EELR HAD +I I+LIGNK 
Sbjct:    71 TAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKNIVIMLIGNKC 130

Query:   144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203
             DL  +RAV  EDA EFA+ + LFF E SAL   NV+TAF  +L EIY  +SKK L   + 
Sbjct:   131 DLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKSLTADDD 190

Query:   204 KVDG-PPMLAGSKIDVIS 220
               DG   +L G++I + S
Sbjct:   191 DADGNSSLLKGTRIIIPS 208

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0070382 "exocytic vesicle" evidence=IDA

GO:0048868 "pollen tube development" evidence=IGI;RCA

GO:0019900 "kinase binding" evidence=IPI

GO:0080092 "regulation of pollen tube growth" evidence=IMP

GO:0090404 "pollen tube tip" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

TAIR|locus:2124092 RABA1d "RAB GTPase homolog A1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 121/214 (56%), Positives = 156/214 (72%)

Query:    23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
             D  DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ +N K+IKAQIW
Sbjct:     8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEKVIKAQIW 67

Query:    83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
             DTAGQERYRA+TSAYYRGA+GA++VYD+T+  +F++V RW+ ELR H D +I ++L+GNK
Sbjct:    68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLVGNK 127

Query:   143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 202
             SDL  + AV  EDA  FAE++ L+F E SAL   NV+ AF  +L +IY  VSKK +E G 
Sbjct:   128 SDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSKKAMEAGE 187

Query:   203 GKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS 236
                + P    G KIDV      ++S +KK   CS
Sbjct:   188 DSGNVPSK--GEKIDV------DVSAVKKTGCCS 213

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2015576 RABA1b "RAB GTPase homolog A1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 120/217 (55%), Positives = 160/217 (73%)

Query:    21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ 80
             + D  DY+FKVV+IGDS VGKS +LSRFTKNEF  +SKSTIGVEF TRT+ ++GK++KAQ
Sbjct:     6 VEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQ 65

Query:    81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIG 140
             IWDTAGQERYRA+TSAYYRGA+GA++VYD+T+R +F++V RW++EL+ H D +I ++L+G
Sbjct:    66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVG 125

Query:   141 NKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELEC 200
             NKSDL  + AV  ED   +AE + L F E SAL   NV+ AF  +L +IY   SKK++E 
Sbjct:   126 NKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEA 185

Query:   201 G-NGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS 236
             G +G    P    G KI+V +    ++S +KKL  CS
Sbjct:   186 GEDGNASVPK---GEKIEVKN----DVSALKKLGCCS 215

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=IMP

TAIR|locus:2159285 RABA1f "RAB GTPase homolog A1F" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 121/215 (56%), Positives = 161/215 (74%)

Query:    23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
             D+ DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++ KI+KAQIW
Sbjct:     8 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKIVKAQIW 67

Query:    83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
             DTAGQERYRA+TSAYYRGA+GA++VYD+T+  +F++V RW++ELR H D++I I+ +GNK
Sbjct:    68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMFVGNK 127

Query:   143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 202
             +DL  +RAVS EDA  FAE +  FF E SAL   NV+ AF  +L +IY  VS+K L+ G 
Sbjct:   128 ADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSRKALDIG- 186

Query:   203 GKVDGPPMLA-GSKIDVISGADLEISEMKKLSTCS 236
                D P  L  G  I+V  G+  ++S +KK+  CS
Sbjct:   187 ---DDPAALPKGQTINV--GSKDDVSAVKKVGCCS 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2086290 RABA1g "RAB GTPase homolog A1G" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 118/214 (55%), Positives = 161/214 (75%)

Query:    23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
             D  D+++KVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++ KI+KAQIW
Sbjct:     8 DDYDFLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDEKIVKAQIW 67

Query:    83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
             DTAGQERYRA+TSAYYRGA+GA++VYD+T+  +F++V RW++ELR H +++I I+L+GNK
Sbjct:    68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTEANIVIMLVGNK 127

Query:   143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 202
             +DL  +RAVS EDA  FAE +  FF E SAL   NV+ AF  +L +IY   SKK L+ G+
Sbjct:   128 ADLRHLRAVSTEDAKAFAERENTFFMETSALEALNVENAFTEVLSQIYRVASKKALDIGD 187

Query:   203 GKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS 236
                D   +  G  I+V  G+  ++SE+KK+  CS
Sbjct:   188 ---DHTTLPKGQSINV--GSKDDVSEVKKVGCCS 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2018698 RABA1i "RAB GTPase homolog A1I" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 120/214 (56%), Positives = 157/214 (73%)

Query:    23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
             D  DY+FKVV+ GDS VGKS +LSRFT+N+F  DS++TIGVEF TR++  + KI+KAQIW
Sbjct:     8 DDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRATIGVEFATRSIQCDDKIVKAQIW 67

Query:    83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
             DTAGQERYRA+TSAYYRGA+GA++VYD+T+  +F++V RW++ELR H D++I I+L+GNK
Sbjct:    68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNK 127

Query:   143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 202
             +DL  +RA+S E+A  FAE +  FF E SAL   NVD AF  +L +IY  VSKK LE G+
Sbjct:   128 ADLRHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSKKALEAGD 187

Query:   203 GKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS 236
                   P   G  I+V  G D +IS +KK   CS
Sbjct:   188 DPTTALPK--GQMINV-GGRD-DISAVKKPGCCS 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40522	RB11D_TOBAC	No assigned EC number	0.6355	0.8860	0.9459	N/A	no
Q40520	RB11C_TOBAC	No assigned EC number	0.6530	0.8227	0.8783	N/A	no
Q40521	RB11B_TOBAC	No assigned EC number	0.5700	0.8776	0.9585	N/A	no
Q5R9M7	RB11A_PONAB	No assigned EC number	0.6306	0.7426	0.8148	yes	no
Q40194	RB11D_LOTJA	No assigned EC number	0.5488	0.8818	0.9587	N/A	no
Q40193	RB11C_LOTJA	No assigned EC number	0.5909	0.8354	0.9166	N/A	no
Q40191	RB11A_LOTJA	No assigned EC number	0.6523	0.8776	0.9203	N/A	no
P17610	YPT3_SCHPO	No assigned EC number	0.5539	0.8818	0.9766	yes	no
P62491	RB11A_HUMAN	No assigned EC number	0.6306	0.7426	0.8148	yes	no
Q01111	YPT3_NICPL	No assigned EC number	0.5560	0.8860	0.9633	N/A	no
Q5ZJN2	RB11A_CHICK	No assigned EC number	0.6306	0.7426	0.8148	yes	no
Q9LNK1	RABA3_ARATH	No assigned EC number	0.6958	0.9873	0.9873	yes	no
P22129	RB11B_DIPOM	No assigned EC number	0.5763	0.8143	0.8853	N/A	no
Q3MHP2	RB11B_BOVIN	No assigned EC number	0.5812	0.8143	0.8853	yes	no
P38555	YPT31_YEAST	No assigned EC number	0.5416	0.8776	0.9327	yes	no
P62494	RB11A_RAT	No assigned EC number	0.6306	0.7426	0.8148	yes	no
Q39572	YPTC6_CHLRE	No assigned EC number	0.595	0.8312	0.9120	N/A	no
Q52NJ1	RB11A_PIG	No assigned EC number	0.6306	0.7426	0.8148	yes	no
Q39434	RB2BV_BETVU	No assigned EC number	0.5688	0.8902	0.9859	N/A	no
P62490	RB11A_CANFA	No assigned EC number	0.6306	0.7426	0.8148	yes	no
P62493	RB11A_RABIT	No assigned EC number	0.6306	0.7426	0.8148	yes	no
P62492	RB11A_MOUSE	No assigned EC number	0.6306	0.7426	0.8148	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026127001 SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (239 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-113
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-91
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	5e-88
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	5e-82
pfam00071	162	pfam00071, Ras, Ras family	8e-82
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-72
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	8e-68
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	9e-67
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	5e-66
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-64
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-62
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-61
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	4e-60
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	8e-59
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-58
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	5e-57
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-52
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	8e-52
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-49
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	9e-48
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-46
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	5e-45
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-44
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	3e-44
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	6e-44
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-43
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	8e-43
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	6e-40
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	8e-40
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-39
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	5e-38
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-36
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-36
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-36
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	7e-36
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	7e-36
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	8e-36
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	7e-35
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	3e-34
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-32
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-31
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-30
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-30
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-30
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	6e-30
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-28
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	3e-28
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	4e-28
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	6e-28
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	3e-27
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-26
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-26
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-26
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	3e-26
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-24
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-23
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	6e-23
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-22
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	4e-22
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-21
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-21
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	5e-21
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-19
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	5e-19
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	4e-18
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	7e-18
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-17
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	5e-17
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	6e-17
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-16
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	7e-16
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-15
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-15
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-15
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	4e-15
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	5e-15
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	7e-15
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	2e-14
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	4e-13
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-12
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	4e-12
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	9e-12
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-11
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-11
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	5e-11
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	8e-11
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-10
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-10
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	4e-10
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-09
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-09
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	6e-09
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	9e-09
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	4e-08
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	6e-08
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-07
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	4e-06
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	1e-05
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	2e-05
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-05
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	1e-04
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-04
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	6e-04
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	0.002
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	0.003

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  321 bits (824), Expect = e-113
 Identities = 114/165 (69%), Positives = 139/165 (84%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+V+IGDS VGKS +LSRFT+NEF  DSKSTIGVEF TRT+ I+GK IKAQIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQERYRA+TSAYYRGA+GA++VYDITK+ +F++V RW++ELR HADS+I I+L+GNKSDL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
             +RAV  E+A  FAE  GL F E SAL+G NV+ AF +LL EIY
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  265 bits (681), Expect = 2e-91
 Identities = 90/162 (55%), Positives = 125/162 (77%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+++IGDS VGKS +LSRFT  +F    KSTIGV+F+T+T+ ++GK +K QIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++TS+YYRGA+GA++VYDIT R+SF+++  W++ELR +A  ++ I+L+GNKSDL + 
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           R VS E+A  FAE+ GL F E SA    NV+ AF  L +EI 
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREIL 162

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  259 bits (662), Expect = 5e-88
 Identities = 117/193 (60%), Positives = 145/193 (75%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+V+IGDS VGKS ILSRFT+NEF  +SKSTIGVEF TRT+ + GK +KAQIWDTA
Sbjct: 10  DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 69

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQERYRA+TSAYYRGA+GA++VYDITKRQ+FD+V RW+ ELR HADS+I I++ GNKSDL
Sbjct: 70  GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDL 129

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKV 205
             +R+V+ ED    AE +GL F E SAL   NV+ AF  +L EIY  +SKK L       
Sbjct: 130 NHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAAA 189

Query: 206 DGPPMLAGSKIDV 218
           +      G+ I+V
Sbjct: 190 NSGLPGQGTTINV 202

Length = 216

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  241 bits (618), Expect = 5e-82
 Identities = 88/159 (55%), Positives = 125/159 (78%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V+IGDS VGK+ +L RF  N+F  + KSTIGV+F+++T+ ++GK +K QIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++TS+YYRGA GA++VYD+T R+SF+++ +W+ EL+ +A  +I IIL+GNKSDL D 
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
           R VS E+A +FA++ GL F E SA  G+NVD AF  L +
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  241 bits (617), Expect = 8e-82
 Identities = 83/161 (51%), Positives = 115/161 (71%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD  VGKS +L RFT+N+F  +   TIGV+F T+T+ ++GK +K QIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149
           +RA+   YYRGA G ++VYDIT R SF++V +W+EE+  HAD ++ I+L+GNK DL D R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 150 AVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            VS E+    A++ GL F E SA   +NV+ AF  L +EI 
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  216 bits (553), Expect = 4e-72
 Identities = 81/162 (50%), Positives = 112/162 (69%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GDS+VGKS I+ RF KNEF  + +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RYR++   YYRGA  A+VVYDIT  +SF+    WV+EL+ H   +I I L GNK+DL   
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           R VS E+A E+A++ GL F E SA  G+NV+  F  + +++ 
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  206 bits (525), Expect = 8e-68
 Identities = 85/164 (51%), Positives = 115/164 (70%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
           Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+GK IK QIWDTAG
Sbjct: 3   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 62

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
           QE +R++T +YYRGA GA++VYDIT+R++F+H+  W+E+ R H++S++ I+LIGNK DL 
Sbjct: 63  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
             R VS E+   FA + GL F E SA    NV+ AF    +EIY
Sbjct: 123 SRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 166

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  203 bits (518), Expect = 9e-67
 Identities = 84/164 (51%), Positives = 118/164 (71%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
           Y+FK ++IGD  VGKS +L +FT+ +F  D   TIGVEF TR + +NG+ IK QIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
           QER+RAVT +YYRGA GA++VYDIT+R +++H++ W+ + R   + +  I LIGNK+DL 
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
             R V+ E+A +FA++ GL F E SA  G+NV+ AF    ++IY
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIY 164

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  201 bits (513), Expect = 5e-66
 Identities = 78/163 (47%), Positives = 118/163 (72%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
           Y+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK +K QIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
           QER+R +TS+YYRGA G ++VYD+T ++SF++V +W++E+  +A  ++  +L+GNK DL 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           D + V   +A EFA++ G+ F E SA N  NV+ AF  + +EI
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  197 bits (504), Expect = 1e-64
 Identities = 76/164 (46%), Positives = 114/164 (69%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF+++ F     STIG++F+ RT+ ++GK IK QIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T++YYRGA+G ++VYDIT  +SF+++  W+  +  HA   +  +L+GNK D+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            + R VS E+    A + G+ F E SA    NV+ AF  L ++I
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  191 bits (488), Expect = 3e-62
 Identities = 83/161 (51%), Positives = 112/161 (69%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK ++IG +  GKS +L +F +N+F  DS  TIGVEF +R V + GK +K QIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R+VT +YYRGA GA++VYDIT R+SF+ +  W+ + R  A   I IIL+GNK DL D 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R V+  +A  FA++ GL F E SAL G+NV+ AF +  + I
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  192 bits (488), Expect = 1e-61
 Identities = 86/165 (52%), Positives = 119/165 (72%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+ K IK QIWDTA
Sbjct: 4   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQE +R++T +YYRGA GA++VYDIT+R++F+H+A W+E+ R HA++++ I+LIGNK DL
Sbjct: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
              RAVS E+  +FA++ GL F EASA    NV+ AF +   +IY
Sbjct: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIY 168

Length = 210

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  186 bits (474), Expect = 4e-60
 Identities = 75/165 (45%), Positives = 108/165 (65%), Gaps = 1/165 (0%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D++FK+++IGDS VGK+ ++ RF    F     +TIGV+F  +T+ I GK +K QIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T +YYR A GA++ YDIT+R SF+ V  W+EE+  +  S++ ++LIGNK DL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 146 VDMRAVSAEDAVEFAEDQGLFFS-EASALNGDNVDTAFFRLLQEI 189
            + R V  E+A   AE  G+    E SA    NV+ AF  +  E+
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  184 bits (469), Expect = 8e-59
 Identities = 85/179 (47%), Positives = 120/179 (67%), Gaps = 2/179 (1%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTA 85
           Y F+++VIGDS VGKS +L RFT+  F   S  T+GV+F +R + I  G  IK Q+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSD 144
           GQER+R++T +YYR ++G ++V+DIT R+SF+HV  W+EE R+H        IL+G+K D
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120

Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203
           L   R V+ E+A + A+D G+ + E SA  GDNV+ AF  L QEIY  + + EL   +G
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDG 179

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  182 bits (464), Expect = 1e-58
 Identities = 74/162 (45%), Positives = 109/162 (67%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K+++IGDS VGKS +L RFT + F  D  STIGV+F+ +TVT++GK +K  IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
           R+R +TS+YYRGA G ++VYD+T+R +FD++  W+ EL  ++ +     +L+GNK D  +
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V+ E+  +FA    + F E SA     V  AF  L+++I
Sbjct: 121 -REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  178 bits (453), Expect = 5e-57
 Identities = 66/161 (40%), Positives = 108/161 (67%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K+V +GD +VGK+ I++RF  + F    ++TIG++F ++T+ ++ K ++ Q+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT RQSFD+  +W++++R    + + I+L+GNK+DL D 
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R VS E+  + A++    F E SA  G NV   F ++ Q +
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  168 bits (427), Expect = 1e-52
 Identities = 76/157 (48%), Positives = 106/157 (67%), Gaps = 1/157 (0%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D++FK+++IGDS VGKS +L RF  N F     +TIGV+F+ RTV ING+ +K QIWDTA
Sbjct: 4   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTA 63

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS YYRG  G +VVYD+T  +SF +V RW++E+  + D  +  +L+GNK+D 
Sbjct: 64  GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDD 122

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
            + + V  EDA +FA   G+   E SA    NV+  F
Sbjct: 123 PERKVVETEDAYKFAGQMGISLFETSAKENINVEEMF 159

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  165 bits (419), Expect = 8e-52
 Identities = 67/161 (41%), Positives = 98/161 (60%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FKVV++G+  VGK+ ++ R+ +N+F    +ST    F  +TV I GK I   IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY A+   YYR A GA++VYDIT   SF  V +W++EL+    ++I ++++GNK DL   
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R VS  +A E+A+  G    E SA  G  ++  F  L + +
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  160 bits (405), Expect = 1e-49
 Identities = 71/164 (43%), Positives = 109/164 (66%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D++FK+V+IG++ VGK+ ++ RFT+  F     +TIGV+F  +TV I G+ IK QIWDTA
Sbjct: 5   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R++T +YYR A   ++ YDIT  +SF  +  W+ E+  +A++ +  IL+GNK DL
Sbjct: 65  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDL 124

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            + R VS + A EF++ Q +++ E SA   DNV+  F  L   +
Sbjct: 125 AERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  155 bits (392), Expect = 9e-48
 Identities = 74/162 (45%), Positives = 109/162 (67%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           +FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +TV  N K IK QIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147
           ERYR +T+AYYRGA+G +++YDIT  +SF+ V  W  +++ ++  + ++IL+GNK D+ D
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R VSAE   + A+  G  F EASA    NV   F RL+  I
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  152 bits (386), Expect = 1e-46
 Identities = 61/160 (38%), Positives = 101/160 (63%), Gaps = 7/160 (4%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            KV+++GDS VGK+ +++++   +F    K+TIG +F T+ VT++ +++  QIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSD 144
           R++++  A+YRGA   V+VYD+T  +SF+ +  W +E    A      +   +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 145 LVDMRAVSAEDAVEFAEDQGL--FFSEASALNGDNVDTAF 182
           L + R VS + A ++ + +G   +F E SA    NVD AF
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYF-ETSAKEAINVDQAF 159

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  148 bits (376), Expect = 5e-45
 Identities = 71/162 (43%), Positives = 107/162 (66%), Gaps = 1/162 (0%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           FKV+++GDS VGK+ +L RF    F   S   T+G++F  + VT++G  +K QIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147
           ER+R+VT AYYR A   +++YD+T + SFD++  W+ E+  +A S + I+L+GNK+D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  ED    A++ G+ F E SA  G NV+ AF  + +E+
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  147 bits (371), Expect = 1e-44
 Identities = 69/157 (43%), Positives = 103/157 (65%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           F++++IGDS VGK+ +L RFT NEF     STIGV+F+ +T+ ++G  ++ QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY+ +T  YYR A G  +VYDI+  +S+ H+ +WV ++  +A   ++ ILIGNK+D    
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
           R V  E   + A++ G+ F E SA    N+  +F RL
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRL 157

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  146 bits (370), Expect = 3e-44
 Identities = 71/175 (40%), Positives = 109/175 (62%), Gaps = 11/175 (6%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN----------GK 75
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  N            
Sbjct: 2   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAF 61

Query: 76  IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SI 134
            +  Q+WDTAGQER+R++T+A++R A+G ++++D+T  QSF +V  W+ +L+AHA   + 
Sbjct: 62  RVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENP 121

Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            I+LIGNK+DL D R VS   A E A+  G+ + E SA  G NV+ A   LL  I
Sbjct: 122 DIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 176

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  146 bits (369), Expect = 6e-44
 Identities = 69/161 (42%), Positives = 109/161 (67%), Gaps = 1/161 (0%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           +V++IG   VGK+ ++ RFT + F    KST+GV+F+ +TV + GK I+ QIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149
           + ++TSAYYR A G ++VYDITK+++FD + +W++ +  +A     ++L+GNK D    R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 150 AVSAEDAVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
            ++ +   +FA+   G+ F EASA +  NVD  F +L+ +I
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 162

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  145 bits (367), Expect = 1e-43
 Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 15/200 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQIWDTAGQ 87
           FKV+VIGD  VGK+ I+ R+    F    K+TIGV+F  + +      +++ Q+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL----RAHADSSIRIILIGNKS 143
           ER+  +T  YY+GA+GA++V+D+T+  +F+ V +W  +L           I  +L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 144 DLVDMR-AVSAEDAVEFAEDQGLFFS---EASALNGDNVDTAFFRLLQEIY----GAVSK 195
           DL   R A   E   +F ++ G  F    E SA    N++ A   L++ I     G  S 
Sbjct: 121 DLKKERLAKDPEQMDQFCKENG--FIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSP 178

Query: 196 KELECGNGKVDGPPMLAGSK 215
           +  E     +      + SK
Sbjct: 179 EPDEDNVIDLKQETTTSKSK 198

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  142 bits (360), Expect = 8e-43
 Identities = 67/164 (40%), Positives = 97/164 (59%), Gaps = 5/164 (3%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           +FK++VIGDS VGK+ +  RF    F   +++TIGV+F+ RTV I+G+ IK Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQ 61

Query: 88  ERYR-AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDL 145
           ER+R ++   YYR     V VYD+T   SF  +  W+EE   H+  + +  IL+GNK DL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL 121

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALN---GDNVDTAFFRLL 186
            +   V  + A  FA+   +   E SA +    D+V+  F  L 
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLA 165

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  134 bits (340), Expect = 6e-40
 Identities = 60/161 (37%), Positives = 87/161 (54%), Gaps = 2/161 (1%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+VV+G   VGKS +  RF   EF  +   TI  +   + + ++G+     I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDM 148
           + A+   Y R   G ++VY IT R+SF+ +    E+ LR      + I+L+GNK DL + 
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R VS E+    AE+ G  F E SA    N+D  F  L++EI
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  136 bits (343), Expect = 8e-40
 Identities = 69/190 (36%), Positives = 96/190 (50%), Gaps = 18/190 (9%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
             FK+VV+GD  VGK+ +L+R   +EF      TIG     +T+    + IK Q+WDTAG
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSDL 145
           QE YR++   YYRGA G ++VYD T R+S D +   W+EELR  A   + I+L+GNK DL
Sbjct: 64  QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123

Query: 146 VD------------MRAVSAEDAVEFAEDQGLFFSE-----ASALNGDNVDTAFFRLLQE 188
            D             R V        A    +         A +L G NV+  F  LL++
Sbjct: 124 FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183

Query: 189 IYGAVSKKEL 198
           +   + K  L
Sbjct: 184 LLEEIEKLVL 193

Length = 219

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  133 bits (337), Expect = 2e-39
 Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 4/157 (2%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
            K+V++GD  VGKS +L+R   N+      K      + T  +  +GK  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQS--FDHVARWVEELRAHADSSIRIILIGNKSDL 145
           E Y A+   YYR    ++ V+DI        + + +  +E+  HA+S + IIL+GNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
            D + +    A  FA+  G      SA  G N+D+AF
Sbjct: 122 RDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  131 bits (330), Expect = 5e-38
 Identities = 68/166 (40%), Positives = 106/166 (63%), Gaps = 3/166 (1%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D  FK+++IGDS VGKS +L  F  +    D   TIGV+F+ + +T+ GK +K  IWDTA
Sbjct: 12  DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTA 70

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRI-ILIGNKS 143
           GQER+R +TS+YYR A G ++VYD+T+R++F +++  W +E+  ++ +   + +L+GNK 
Sbjct: 71  GQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKV 130

Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           D    R VS E+ +  A++ G  F E SA   +NV+  F  L  +I
Sbjct: 131 DRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKI 176

Length = 211

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  126 bits (319), Expect = 1e-36
 Identities = 63/162 (38%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F  D   TI  +   + + I+G++    I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
            + A+   Y R   G ++VY IT RQSF+ + ++ E+ LR      + I+L+GNK DL  
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R VS E+  E A   G  F E SA    NVD AF+ L++EI
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  126 bits (317), Expect = 2e-36
 Identities = 62/159 (38%), Positives = 100/159 (62%), Gaps = 3/159 (1%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KV+V+GD +VGK+ +++RF K+ F  + K+TIGV+F+     + G     Q+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLV-- 146
           ++ + S YYRGA   ++V+D+T   S +H  +W+E+ L+ +  SS+ + L+G K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
              A+  +DA++ A +    +   SAL G+NV   FFR+
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRV 160

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  125 bits (317), Expect = 2e-36
 Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F  +   TI  +   + + I+G++    I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
            + A+   Y R   G ++VY IT RQSF+ +A++ E+ LR      + I+L+GNK DL +
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R VS E+  E A   G  F E SA    NVD AF+ L++EI
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  125 bits (315), Expect = 7e-36
 Identities = 62/164 (37%), Positives = 101/164 (61%), Gaps = 9/164 (5%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRF----TKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
           DY+ K +++GDS VGK +IL+      T++ + ++     G++++T T+ ++G+ +K Q+
Sbjct: 4   DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNM----GIDYKTTTILLDGRRVKLQL 59

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDT+GQ R+  +  +Y RGA G ++VYDIT R SFD + RW++E+  HA   +  IL+GN
Sbjct: 60  WDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGN 118

Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
           +  L   R V+ E A  +AE  G+ F E S L   N+  +F  L
Sbjct: 119 RLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  124 bits (313), Expect = 7e-36
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 4/163 (2%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--GKIIKAQIWDTAGQ 87
           KV+V+G+  VGKS ++ RF K  F  D K TIGV+F  + + +    + ++  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147
           E + A+T AYYRGA   ++V+  T R+SF+ +  W E++ A     I ++L+  K DL+D
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLD 120

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
              ++ E+A   A+   L     S  +  NV T  F  L E  
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNV-TELFEYLAEKC 162

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  125 bits (315), Expect = 8e-36
 Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 6/158 (3%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           KVV++G  +VGK+ ++ R+  + F     ++TIG  F  + + +  +++   IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV-- 146
           RY A++  YYRGA  A+V YD+T   SF+    WV+EL+ + +   +I L G KSDL+  
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ-NLEEHCKIYLCGTKSDLIEQ 120

Query: 147 --DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
              +R V   D  +FA++      E S+  G NVD  F
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  122 bits (307), Expect = 7e-35
 Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 5/165 (3%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KV+ +G+S VGKS I+ R+ +  F      TIG+++  + V++  K ++   +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-----SIRIILIGNKSD 144
           Y  V + +Y+   G ++VYD+T RQSF+ +  W++E++          +I +++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           L   RAVS ++   +AE +G  + E SA  G+ V+  F  L   I
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  120 bits (302), Expect = 3e-34
 Identities = 58/167 (34%), Positives = 100/167 (59%), Gaps = 6/167 (3%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + KV+++GD  VGKS +++R+  N+F      TIGVEF  + + ++G  +  QIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKS 143
           ER+R++ + +YRG+   ++ + +   QSF +++ W +E   +AD     S   +++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 144 DLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEI 189
           D+ + R VS E+A  +  D G + + E SA +  NV  AF   ++ +
Sbjct: 125 DIPE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  116 bits (293), Expect = 2e-32
 Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 5/176 (2%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI-IKAQIWDTAGQ 87
            K+VV+GD A GK+ ++ RF +  F    K TIG++F +R +T+ G + +  Q+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
           +    +   Y  GA    +VYDIT  QSF+++  W+  ++   + S     ++L+GNK+D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGA-VSKKELE 199
           L   R V+AE    FA++  +     SA  GD V   F R+  E+ G  +S+ ELE
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELE 176

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  112 bits (282), Expect = 3e-31
 Identities = 62/163 (38%), Positives = 96/163 (58%), Gaps = 2/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++G+ ++  I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQLNILDTAGQE 59

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
            Y A+   Y+R   G ++V+ IT  +SF  +A + E+ LR   D ++ ++L+GNK DL D
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            R VS E+A   AE  G+ + E SA    NVD  FF L++EI 
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIR 162

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  110 bits (277), Expect = 1e-30
 Identities = 49/132 (37%), Positives = 88/132 (66%)

Query: 58  KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFD 117
           +STIG++F ++T+ ++   ++ Q+WDTAGQER+R++  +Y R +  A+VVYDIT RQSF+
Sbjct: 10  QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFE 69

Query: 118 HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN 177
           +  +W++++       + I L+GNK+DL D+R V+ E+ ++ A++    F E SA  G N
Sbjct: 70  NTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHN 129

Query: 178 VDTAFFRLLQEI 189
           +   F ++  ++
Sbjct: 130 IKVLFKKIAAKL 141

Length = 176

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  110 bits (278), Expect = 2e-30
 Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 4/162 (2%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+ V+G  +VGKS +  +F +  F      TI   F ++ +T  G+    +I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE--LRAHADSSIRIILIGNKSDLVD 147
           Y  +   Y  G  G ++VY +T R+SF+ V + + +  L      S+ I+L+GNKSDL  
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFE-VVKVIYDKILDMLGKESVPIVLVGNKSDLHM 120

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R VSAE+  + AE  G  F E+SA   +NV+ AF  L++EI
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  110 bits (277), Expect = 2e-30
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 15/166 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+VV+GD AVGK+ +L  +T N+F  +   T+  +  +  VT++GK +   +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSDLVDM 148
           Y  +    Y      ++ + +    SF++V   W  E++ +   ++ IIL+G K DL D 
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYC-PNVPIILVGTKIDLRDD 119

Query: 149 RA-----------VSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                        ++ E+  + A++ G   + E SAL  + +   F
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  109 bits (273), Expect = 6e-30
 Identities = 58/163 (35%), Positives = 89/163 (54%), Gaps = 2/163 (1%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
            +K+VV+G   VGKS +  +F ++ F  D   TI   + T+   I+G+  +  I DTAGQ
Sbjct: 2   TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQ 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLV 146
           E + A+   Y R   G ++V+ +T R SF+ V ++  + LR        +IL+GNK+DL 
Sbjct: 61  EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             R VS E+  E A    + + E SA +  NVD AF  L++ I
Sbjct: 121 HQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  105 bits (264), Expect = 1e-28
 Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 9/168 (5%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K++++GDSAVGKS+++ RF  + +     ST  +          GK I    WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149
           ++ + ++YY  A   ++V+D+T++ ++ ++++W EELR +    I  I++ NK DL D  
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDL-DPS 119

Query: 150 AVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE-IYGAVSKK 196
               +    FAE   L     SA +G NV     +L Q+ I  AVS K
Sbjct: 120 VT--QKKFNFAEKHNLPLYYVSAADGTNV----VKLFQDAIKLAVSYK 161

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  104 bits (261), Expect = 3e-28
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I  R+SF+ +  + E+  R      + ++L+GNK DL  
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R VS     + A+  G+ + E SA     V+ AF+ L++EI
Sbjct: 121 -RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  104 bits (261), Expect = 4e-28
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +N F      TI   ++   V I+G+    +I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRK-QVEIDGRQCDLEILDTAGTE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G ++VY +T   S + +    E+ LR     ++ ++L+GNK+DL D
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 148 MRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEI 189
            R VS ED V  ++  G   F E SA    NVD  F  L+++I
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  103 bits (260), Expect = 6e-28
 Identities = 59/165 (35%), Positives = 88/165 (53%), Gaps = 6/165 (3%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+ V+G S VGKS +  RF    F  + +  +   + +R VTI+G+ +  +I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 90  YRAV--TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA--DSSIRIILIGNKSDL 145
                      R A G V+VY IT R SFD V++ ++ +R     D  I +IL+GNK+DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASA-LNGDNVDTAFFRLLQEI 189
           +  R VS E+  + A + G  F E SA  N   V   F  L +E+
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREV 164

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  103 bits (257), Expect = 3e-27
 Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +N F  +   TI   ++ +   I+ +     I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
            Y A+   Y R   G + VY IT R SF+ +A + E+ LR      + +IL+GNK DL  
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R VS  +  E A+  G+ F E SA    NVD AF+ L++EI
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  101 bits (253), Expect = 1e-26
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 16/166 (9%)

Query: 31  VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY 90
           +VV+GD AVGK+ +L  +T N F  D   T+   +    V ++GK ++  +WDTAGQE Y
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSA-DVEVDGKPVELGLWDTAGQEDY 59

Query: 91  RAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDL---- 145
             +    Y      ++ + +    SF++V  +W  E++     ++ IIL+G K DL    
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNVPIILVGTKLDLRNDK 118

Query: 146 --------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                        V+ E     A+  G   + E SAL  + V   F
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  100 bits (251), Expect = 2e-26
 Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 9/182 (4%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+VV+GD  VGK+ +  +   N F      TI   ++ + V ++G+    ++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS---IRIILIGNKSDLV 146
           Y A+   + R   G ++VY IT R +F+ V R+ E+++   D S   + I+++GNK D V
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVD 206
             R VS E+    A   G  F EASA    NV+ AF+ L++ +     +++ + G G   
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL-----RQQRQGGQGPKG 174

Query: 207 GP 208
           GP
Sbjct: 175 GP 176

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =   99 bits (249), Expect = 2e-26
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 5/158 (3%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKS--TIGVEFQTRTVTI--NGKIIKAQIWDTA 85
           +  V+GD AVGKS ++  F  +   F      T G +   +TV +      ++  I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRI-ILIGNKSD 144
           GQE +  +    +       VVYD+T   SF++ +RW+  +R H+       +L+GNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
           L D R V A  A   A+   L F E SA  G   +  F
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPF 159

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 99.3 bits (248), Expect = 3e-26
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   I+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY     A++++D+T R ++ +V  W  +L      +I I+L GNK D+   
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI--K 117

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
                   + F   + L + E SA +  N +  F  L +++ G
Sbjct: 118 DRKVKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 95.2 bits (237), Expect = 1e-24
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 13/165 (7%)

Query: 32  VVIGDSAVGKSQILSRFTKNEFFFDSK---STIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           VV+G   VGKS +L+     E    S    +T   +       ++   +K  + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLD 58

Query: 89  RY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS 143
            +       +     RGA   ++V D T R+S +        LR      I IIL+GNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKL--LILRRLRKEGIPIILVGNKI 116

Query: 144 DLVDMRAVSAED-AVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
           DL++ R V       E A+  G+   E SA  G+ VD  F +L++
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 93.3 bits (232), Expect = 3e-23
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF    + TIGVE        N   I+   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY     A++++D+T R ++ +V  W  +L    + +I I+L GNK D+ + 
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + E SA +  N +  F  L +++ G
Sbjct: 132 RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173

Length = 219

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 91.1 bits (226), Expect = 6e-23
 Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI  +   + + ++ +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT +QSF+ +    E+ LR      + +IL+GNK DL D
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 148 MRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEI 189
            R VS E+    A   G   F E SA +  NVD  F+ L+++I
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 90.7 bits (225), Expect = 1e-22
 Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 8/174 (4%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
            +K+V++G   VGKS +  +F  + F      TI   ++T+   I+ +     I DTAGQ
Sbjct: 2   EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQ 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL--RAHADSSIRIILIGNKSDL 145
             + A+   Y R   G ++ Y +T R SF   A   +EL  R      I ++L+GNK DL
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSF-QEASEFKELITRVRLTEDIPLVLVGNKVDL 119

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 199
              R V+ E+    A +    F E SA     +D AF  L++EI     +KE  
Sbjct: 120 EQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREI----RRKESM 169

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 88.7 bits (220), Expect = 4e-22
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI   ++ + V ++G+    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G V+VY IT + +F+ +    E+ LR      + +IL+GNK DL D
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  E     A   G  F E SA    NV+  F+ L+++I
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 87.2 bits (216), Expect = 1e-21
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +KVVV+G   VGKS +  +F    F      TI  +F  + + ++      +I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ ++   Y +   G +VVY +  +Q+F  +    ++ +R      + IIL+GNK DL  
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R VS+ +    AE+ G  F E SA +   V+  F  +++++
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 87.8 bits (218), Expect = 2e-21
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 17/172 (9%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQIWDT 84
           D   K+VV+GD   GK+ +L  + +  F  +   T+  E    T+ + NGKII+  +WDT
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDT 59

Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKS 143
           AGQE Y  +    Y      ++ Y +    S D+V  +W  E+  H      I+L+G K+
Sbjct: 60  AGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVGLKT 118

Query: 144 DL-------VDMRA-----VSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
           DL         +RA     V+ E     A+  G   + E SA   +NVD  F
Sbjct: 119 DLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 87.1 bits (216), Expect = 5e-21
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 18/182 (9%)

Query: 15  QQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING 74
            QQ + +P+     FK++++GD  VGK+  + R    EF      T+GVE        N 
Sbjct: 1   MQQMDEVPE-----FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNC 55

Query: 75  KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD--- 131
             I   +WDTAGQE++  +   YY     A++++D+T R ++ +V  W      H D   
Sbjct: 56  GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNW------HRDIVR 109

Query: 132 --SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              +I I+L+GNK D+ D R V A   + F   + L + + SA +  N +  F  L + +
Sbjct: 110 VCENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFLWLARRL 167

Query: 190 YG 191
             
Sbjct: 168 TN 169

Length = 215

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 82.8 bits (204), Expect = 2e-19
 Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 3/158 (1%)

Query: 34  IGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV 93
           +GD   GK+  + R    EF     +T+GVE        N   I+  +WDTAGQE++  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 94  TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSA 153
              YY     A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D R V A
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKD-RKVKA 118

Query: 154 EDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           + ++ F   + L + + SA +  N +  F  L +++ G
Sbjct: 119 K-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 80.7 bits (199), Expect = 5e-19
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 14/165 (8%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K V +GD AVGK+ +L  +T N F  D   T+   F +  V ++G  +   +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM 148
           Y  +    YRGA   ++ + +  + S+++V  +W+ ELR +A   + I+L+G K DL D 
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA-PGVPIVLVGTKLDLRDD 120

Query: 149 RAVSAE--DAVEFAEDQGL---------FFSEASALNGDNVDTAF 182
           +   A+   AV     QG           + E S+    NV   F
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 79.6 bits (196), Expect = 4e-18
 Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 53/198 (26%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEF---QTRTVTINGKIIKAQIWDTAG 86
           KVV++GD  VGK+ +L R+ +  F  D+ ST+G  F   Q     I+       IWDTAG
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQWGPYNIS-------IWDTAG 53

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDL 145
           +E++  + S Y RGA   ++ YD++  QS + +  R++       +  +  + +GNK DL
Sbjct: 54  REQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAV-VGNKLDL 112

Query: 146 V-------------------DMRAVSAEDAVEFAE----------------DQGLFFSEA 170
                               D R V+ EDA  F +                ++  F  E 
Sbjct: 113 TEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCF--ET 170

Query: 171 SALNGDNVDTAF---FRL 185
           SA  G NVD  F   F L
Sbjct: 171 SAKTGYNVDELFEYLFNL 188

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 78.6 bits (194), Expect = 7e-18
 Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 1/155 (0%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           ++VV++GDS VGKS + + FT   +   +    G +   RTV+++G+     ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIILIGNKSDLVD 147
               +  +  +     V+VY +T R SF+  +    +LR A     I IIL+GNKSDLV 
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
            R VS ++    A      F E SA    NVD  F
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELF 155

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 77.4 bits (191), Expect = 1e-17
 Identities = 42/169 (24%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+ ++GD+ +GK+ ++ ++ + EF  +   T+GV F  +T++I G  I   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL-VDM 148
           +  +     + A+  + ++D+T++ + + +  W  + R    ++I  IL+G K DL  D+
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADL 120

Query: 149 RAVSAEDAVEFAEDQG------LFFSEASALNGDNVDTAFFRLLQEIYG 191
                E+  + A          L F   S  +  NV   F  +L +++ 
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIFCSTS--HSINVQKIFKFVLAKVFD 167

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 75.2 bits (185), Expect = 5e-17
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 4/161 (2%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           ++VVV G   VGKS ++ RF K  F      TI   ++ + ++ +  I   QI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVE---ELRAHADSSIRIILIGNKSDL 145
           ++ A+           ++VY IT +QS + +    E   E++ +    I I+L+GNK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186
              R VS+ +    A      F E SA    NV   F  LL
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 75.1 bits (185), Expect = 6e-17
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 16/167 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K V++GD AVGK+ ++  +T N +  +   T    F    V ++GK ++ Q+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           +  +    Y      ++ + +    SF +++ +W+ E+R H   +  IIL+G ++DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKA-PIILVGTQADLRTD 119

Query: 148 -----------MRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                       + VS   A   AE  G   + E SAL   N+   F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 73.3 bits (180), Expect = 3e-16
 Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 30/174 (17%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEF-------FFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
           K VV+GD AVGK+ +L  +T N F        FD+ S          V ++GK +   +W
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--------NVMVDGKPVNLGLW 54

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGN 141
           DTAGQE Y  +    Y      ++ + +    SF++V A+W  E+R H   +  IIL+G 
Sbjct: 55  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGT 113

Query: 142 KSDLVD------------MRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
           K DL D            +  ++    +  A++ G   + E SAL    + T F
Sbjct: 114 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 72.9 bits (179), Expect = 7e-16
 Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 14/165 (8%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  FT  EF  +   T+   + T    ++GK ++  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQEE 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y  A   ++ + I    S ++V  +W+EE+R +   ++ +IL+G K DL   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQE 120

Query: 146 -------VDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVDTAF 182
                       V  + A   A   G   + E SAL G+ VD  F
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQE 88
           K++++G   VGK+ +  +    +F  D  ST G+  Q   +     K I+  +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 89  RYRAV------TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
            Y A       + + Y      ++V+D+        V  W+ +++A    S  +IL+G  
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAFGGVS-PVILVGTH 115

Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD 179
            D      +  +   +            S  NG  + 
Sbjct: 116 IDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIA 152

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 72.2 bits (177), Expect = 1e-15
 Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 3/161 (1%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           ++V +G + VGK+ ++ RF  + F    + T+  E  ++   + G  +   I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDM 148
           + A+     +      +VY +   +SF+ V R  EE L    D  + I+++GNK D +  
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 149 RAVSAEDAVEFAE-DQGLFFSEASALNGDNVDTAFFRLLQE 188
           R V A DA+   E D    F EASA + +NV   F  LLQ+
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQ 160

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 69.7 bits (171), Expect = 2e-15
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 14/121 (11%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ-----IWDT 84
           KVVVIGD   GKS +LS+    EF         +E Q  T+ ++   +        IWD 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEF-----PPEPLEIQGDTLAVDTLEVDGDTGLLNIWDF 55

Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR---WVEELRAHADSSIRIILIGN 141
            G+E  +     + + A   ++VYD+T R+S + V+R   W+  LR      I +IL+GN
Sbjct: 56  GGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIPVILVGN 114

Query: 142 K 142
           K
Sbjct: 115 K 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 72.1 bits (177), Expect = 4e-15
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 11/167 (6%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +++VV+G S VGK+ I+SRF    F      TI  +F  +  +I G++ +  I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRA---------HADSSIRIILI 139
            + A+           ++V+ +  R+SF+ V R  E++             +  I +++ 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 140 GNKSDLVDMRAVSAEDAVEF-AEDQGLFFSEASALNGDNVDTAFFRL 185
           GNK+D    R V  ++  +    D+   + E SA    N+D  F  L
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRAL 166

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 70.7 bits (173), Expect = 5e-15
 Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 12/166 (7%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KVVV+GD A GK+ +L+ FT+  F    + T+  E     + ++G  ++  +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM 148
           +  + S  Y      ++ + +    S ++V ++W+ E+R H    ++++L+  K DL + 
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCP-GVKLVLVALKCDLREP 119

Query: 149 RAVSAEDAVEFAEDQGLF---------FSEASALNGDNVDTAFFRL 185
           R          + ++GL          + E SA     V+ AF   
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEA 165

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 69.5 bits (171), Expect = 7e-15
 Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 9/162 (5%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           +++++G    GK+ IL +  K      +  TIG  F   TV          +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKL-KLGEVVTTIPTIG--FNVETVEYKNVKF--TVWDVGGQDK 55

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVDM 148
            R +   YY    G + V D + R+  +     + +L    +     +LI  NK DL   
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGA 115

Query: 149 RAVSA-EDAVEFAEDQGL--FFSEASALNGDNVDTAFFRLLQ 187
              S   + +     +G        SA+ GD +D     L++
Sbjct: 116 LTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIE 157

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 16/182 (8%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+   +  +T  ++G+ +   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT-AVDGRTVSLNLWDTAGQEE 63

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  + +  Y      ++ + I    S+++V  +W  E+  H   ++ I+L+G K DL + 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRND 122

Query: 148 ---MRAVSAEDAVEFAEDQG---------LFFSEASALNGDNVDTAFFRLLQEIYGAVSK 195
              ++ +  +        QG         + + E SALN D V   F   ++ +      
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPI 182

Query: 196 KE 197
           K+
Sbjct: 183 KD 184

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GDS  GK+ +L  F K+ F  +   T+  E  T +  ++ + I+  +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSDL 145
           Y  V    Y  +   ++ +DI++ ++ D V + W  E+R     +  ++L+G KSDL
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDL 117

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 16/167 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H       +L+G + DL D 
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 120

Query: 148 -----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                       + ++ E   + A D   + + E SAL    +   F
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+    AE  G F + E SA   + V   F
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 61.8 bits (150), Expect = 9e-12
 Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 34/185 (18%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-----KIIKAQIWDT 84
           KV+V+GDS VGKS ++    KN+   +   T+G     R  T        K    ++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 85  AGQ----ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAH----------- 129
            G     E  ++  + +Y    G + V+D+T ++S  ++ RW  E               
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 130 --------ADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA 181
                   A + + +++IG K D +       E    +   +  F SE       N+D  
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLDQI------PEAKRNWVLTRTAFLSEDFNAEEINLDCT 175

Query: 182 FFRLL 186
             RLL
Sbjct: 176 NGRLL 180

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 60.5 bits (146), Expect = 2e-11
 Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 3/117 (2%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+VV+GDS  GK+ +L  F K+ F  +   T+  E  T +  I+ + I+  +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSDL 145
           Y  V    Y  +   ++ +DI++ ++ D V + W  E++    ++ +++L+G KSDL
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDL 121

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 59.5 bits (145), Expect = 3e-11
 Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 13/167 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G    GK+ IL +  K      +  TIG  F   TVT     +K  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKL-KLGEIVTTIPTIG--FNVETVTYKN--VKFTVWDVGGQE 69

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVD 147
             R +   Y+      + V D   R   +     +  L    + +   +LI  NK DL  
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG 129

Query: 148 MRAVSAEDAVEFAEDQGL-----FFSEASALNGDNVDTAFFRLLQEI 189
             A+S  +  E      L          SA+ G+ +D     L   I
Sbjct: 130 --AMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 61.0 bits (148), Expect = 5e-11
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-----NGKIIKA----- 79
           +V+V+GDS VGKS ++    K         TIG     + +T      +   IK      
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 80  ---QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS--- 133
              ++WD +G ERY+   S +Y    G + V+D+++R++   + +W  E+ A    S   
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPL 142

Query: 134 ---------IRIILIGNKSDLV--DMRAVSAEDAVEFA----EDQGL 165
                    +  I+IGNK+D+   +    S+ + V+ A    E QGL
Sbjct: 143 GSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189

Length = 334

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 59.1 bits (143), Expect = 8e-11
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 25/139 (17%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD----- 83
            +V V+G   VGK+ I+ +F   EF  +   T         V ++G++    I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 84  ----TAGQE----RYRAV--TSAYYRGALGAVVVYDITKRQSFDHVA---RWVEELRAHA 130
               TAGQE    R+R +  + A+       ++VYDI    SF +V    + + E R   
Sbjct: 61  RYPGTAGQEWMDPRFRGLRNSRAF-------ILVYDICSPDSFHYVKLLRQQILETRPAG 113

Query: 131 DSSIRIILIGNKSDLVDMR 149
           +    I+++GNK D    R
Sbjct: 114 NKEPPIVVVGNKRDQQRHR 132

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 24/167 (14%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKS-----TIGVEFQTRTVTINGKIIKAQIWDT 84
           ++V+IGD  VGKS ++      EF  +        TI  +     V          I DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTT-------IVDT 56

Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKS 143
           + + + RA  +A  R A    +VY + +  + + +  +W+  +R      + IIL+GNKS
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKS 115

Query: 144 DLVDMR-AVSAEDAV-----EFAE-DQGLFFSEASALNGDNVDTAFF 183
           DL D       E+ +     EF E +  +   E SA    NV   F+
Sbjct: 116 DLRDGSSQAGLEEEMLPIMNEFREIETCV---ECSAKTLINVSEVFY 159

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 15/166 (9%)

Query: 30  KVVVIG-DSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +V+++G DSA GKS +L +  K+     +  T+G  F    + +   +    +WD  GQE
Sbjct: 1   QVLLLGLDSA-GKSTLLYKL-KHAELVTTIPTVG--FNVEMLQLEKHL-SLTVWDVGGQE 55

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
           + R V   Y     G V V D +     D   + ++  L+      + ++L+ NK DL  
Sbjct: 56  KMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115

Query: 148 MRAVSAEDAVE------FAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
             A++AE+         +  D+  +    SA+ G+ +  AF +L  
Sbjct: 116 --ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 58.1 bits (140), Expect = 1e-10
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 16/168 (9%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +  + F  +   T+   +   +VT+ GK     ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQE 59

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF +V   WV EL+ +A  ++  +LIG + DL D
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPYLLIGTQIDLRD 118

Query: 148 ------------MRAVSAEDAVEFAEDQGL-FFSEASALNGDNVDTAF 182
                        + ++ E   + A++ G   + E SAL    + T F
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 31  VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY 90
           + ++G    GK+ +++     +F  D+  T+G  F  R VT     IK  +WD  GQ R+
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRF 57

Query: 91  RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLV 146
           R++   Y RG    V V D   R+  + VA+   EL    +      I ++++GNK+DL 
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLE-VAK--NELHDLLEKPSLEGIPLLVLGNKNDLP 114

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEA-----SALNGDNVDT 180
              A+S ++ +E    + +   E      SA    N+D 
Sbjct: 115 G--ALSVDELIEQMNLKSITDREVSCYSISAKEKTNIDI 151

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 7/140 (5%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+VV+GD+  GK+ +L  F K+ +      T+  E  T +  I+   I+  +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNK----SD 144
           Y  V    Y  +   ++ +DI++ ++ D V  +W  E +    ++ +++L+G K    +D
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNA-KLVLVGCKLDMRTD 120

Query: 145 LVDMRAVSAEDAVEFAEDQG 164
           L  +R +S +  +    +QG
Sbjct: 121 LSTLRELSKQRLIPVTHEQG 140

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTI-GVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +++++G  A GK+ IL +         S +TI  V F   TVT   K +K  +WD  GQ+
Sbjct: 11  RILMLGLDAAGKTTILYKLKLG----QSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 64

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSDL 145
           + R +   YY G  G + V D   R   D  AR  E  R   D  +R   +++  NK DL
Sbjct: 65  KIRPLWRHYYTGTQGLIFVVDSADRDRIDE-AR-QELHRIINDREMRDALLLVFANKQDL 122

Query: 146 VD 147
            D
Sbjct: 123 PD 124

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 18/137 (13%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG--VEFQTRTVTINGKIIKAQIWDTAG 86
           +KV+++G    GK+ IL +F   E    +  TIG  VE       I  K I+  +WD  G
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVV-HTSPTIGSNVE------EIVYKNIRFLMWDIGG 68

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR---AHADSSIRIILI-GNK 142
           QE  R+  + YY      ++V D T R+    + +  EEL    AH D    ++L+  NK
Sbjct: 69  QESLRSSWNTYYTNTDAVILVIDSTDRERLP-LTK--EELYKMLAHEDLRKAVLLVLANK 125

Query: 143 SDLVDMRAVSAEDAVEF 159
            DL    A++  +  E 
Sbjct: 126 QDLKG--AMTPAEISES 140

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 53.0 bits (127), Expect = 9e-09
 Identities = 47/140 (33%), Positives = 64/140 (45%), Gaps = 17/140 (12%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           +++++G  A GK+ IL +    E    +  TIG  F   TVT   K I   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESV-TTIPTIG--FNVETVTY--KNISFTVWDVGGQDK 69

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSIR---IILIGNKSDL 145
            R +   YY    G + V D   R   D  AR  EEL R   +  +R   I++  NK DL
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDE-AR--EELHRMLNEDELRDAVILVFANKQDL 126

Query: 146 VDMRAVSAEDAVEFAEDQGL 165
            D     A  A E  E  GL
Sbjct: 127 PD-----AMKAAEITEKLGL 141

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 12/166 (7%)

Query: 30  KVVVIGDSAVGKS---QILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKII-----KAQ 80
           K+VVIG    GK+   + LS         D+ S  G   +  TV ++ G I         
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVH 71

Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIG 140
           ++ T GQER++ +     RGA+GA+V+ D ++  +F H    ++ L +     I +++  
Sbjct: 72  LFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAI 128

Query: 141 NKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186
           NK DL D             E   +   E  A  G+        LL
Sbjct: 129 NKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLL 174

Length = 187

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 11/169 (6%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI---NGKIIKAQIWDTA 85
             +V++G  + GK+ +L R   NEF  ++  T G  F T  + +   N K +    WD  
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVG 60

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSIRIILIGNKSD 144
           GQE+ R +  +Y R   G V V D    +  +     + ++ +   +  + ++++ NK D
Sbjct: 61  GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQD 120

Query: 145 LVDMRAVSAEDAV----EFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           L +   VS  + +    E +         A A+ G+ +     +L + I
Sbjct: 121 LPNALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMI 169

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 3/117 (2%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD   GK+ +L    K+ +      T+  E  T  +    + ++  +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDH-VARWVEELRAHADSSIRIILIGNKSDL 145
           Y  V    Y  +   ++ +DI++ + FD  + +W  E+  +  S+ RI+LIG K+DL
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPST-RILLIGCKTDL 129

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 17/164 (10%)

Query: 31  VVVIGDSAVGKS----QILSRFTKN-EFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           V+++G    GK+    Q  ++F+KN +    SK T  V     T+ +    +    WD  
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLM--FWDLG 59

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSD 144
           GQE  R++   YY  + G + V D T R+ F+      E++  +     + ++++ NK D
Sbjct: 60  GQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQD 119

Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEA-------SALNGDNVDTA 181
           L D  A+S  +  E  +D               SAL G+ V+  
Sbjct: 120 LPD--ALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           +VV +G    GK+ IL +  ++EF      TIG   +T    +  K +K  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVET----VEYKNLKFTIWDVGGKHK 55

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVDM 148
            R +   YY      V V D + R         + +L    +    ++LI  NK D+   
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG- 114

Query: 149 RAVSAEDAVEF 159
            A+S E+  E 
Sbjct: 115 -ALSVEEMTEL 124

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 29/174 (16%)

Query: 31  VVVIGDSAVGKSQILSRF-TKNEFFFDSKSTIG--VE-FQTRTVTINGKIIKAQIWDTAG 86
           ++V+G    GK+ I+++    N    +   T+G  VE F+   ++          +D +G
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSF-------TAFDMSG 54

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI---GNKS 143
           Q +YR +   YY+   G + V D + R         +E L  H D   R I I    NK 
Sbjct: 55  QGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKM 114

Query: 144 DLVDMRAVSAEDAVEFAEDQGL---------FFSEASALNGDNVDTAFFRLLQE 188
           DL D     A  AV+  +   L          F+ +SAL G+ +D     L  +
Sbjct: 115 DLPD-----ALTAVKITQLLCLENIKDKPWHIFA-SSALTGEGLDEGVDWLQAQ 162

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 14/133 (10%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           +++++G  A GK+ IL +    E    +  TIG  F   TV    K +K  +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEVV-TTIPTIG--FNVETVEY--KNLKFTMWDVGGQDK 73

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSIR---IILIGNKSDL 145
            R +   YY+   G + V D   R+     AR  EEL R  ++  +R   +++  NK DL
Sbjct: 74  LRPLWRHYYQNTNGLIFVVDSNDRERIGD-AR--EELERMLSEDELRDAVLLVFANKQDL 130

Query: 146 VDMRAVSAEDAVE 158
            +  A+S  +  E
Sbjct: 131 PN--AMSTTEVTE 141

Length = 182

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 40/190 (21%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDS----------------KSTIGVEFQTRTVTI 72
            K VV+GD+AVGK++++     N+                     +    V  ++R V +
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDV-V 61

Query: 73  NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-WVEELRAHAD 131
           +G  +  ++WDT G +  +    AY R  +  ++ + I    S  +V   W  E+R    
Sbjct: 62  DGVSVSLRLWDTFG-DHDKDRRFAYGRSDV-VLLCFSIASPNSLRNVKTMWYPEIRHFC- 118

Query: 132 SSIRIILIGNKSDLVDM-------------------RAVSAEDAVEFAEDQGLFFSEASA 172
             + +IL+G K DL                        +  E     A++ G+ + E S 
Sbjct: 119 PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSV 178

Query: 173 LNGDNVDTAF 182
           +    V   F
Sbjct: 179 VTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 17/140 (12%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSIR---IILIGNKSDL 145
            R +   Y++   G + V D   R   D V    +EL R   +  +R   +++  NK DL
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130

Query: 146 VDMRAVSAEDAVEFAEDQGL 165
            +     A +A E  +  GL
Sbjct: 131 PN-----AMNAAEITDKLGL 145

Length = 181

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           +++++G  A GK+ IL +    E    +  TIG  F   TV    K I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 56

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDL 145
            R +   Y++   G + V D   R+        ++ +    +    ++L+  NK DL
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           +++++G    GK+ IL +   +E       T G  F  + V  +G   K  +WD  GQ +
Sbjct: 17  RILLLGLDNAGKTTILKQLA-SEDISHITPTQG--FNIKNVQADG--FKLNVWDIGGQRK 71

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDM 148
            R     Y+      + V D   R+ F+   + + EL      + + +++  NK DL+  
Sbjct: 72  IRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLT- 130

Query: 149 RAVSAEDAVE 158
            A  AE+  E
Sbjct: 131 -AAPAEEVAE 139

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 17/140 (12%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           +++++G    GK+ IL R    E    +  TIG  F   TVT   K +K Q+WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTY--KNLKFQVWDLGGQTS 55

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS----SIRIILIGNKSDL 145
            R     YY      + V D T R   D +     EL A  +        +++  NK D+
Sbjct: 56  IRPYWRCYYSNTDAIIYVVDSTDR---DRLGISKSELHAMLEEEELKDAVLLVFANKQDM 112

Query: 146 VDMRAVSAEDAVEFAEDQGL 165
                  A    E AE  GL
Sbjct: 113 PG-----ALSEAEVAEKLGL 127

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 38/153 (24%), Positives = 55/153 (35%), Gaps = 31/153 (20%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGKIIKAQIWDTAG 86
           VF   V+G    GKS +L  F    F  ++ S TI   +   TV            +  G
Sbjct: 4   VFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTV------------EVPG 51

Query: 87  QERY---RAVTSAYYRGALG---------AVVVYDITKRQSFDHVARWVEELRAH--ADS 132
           QE+Y   R V        L          A +VYD +   SF + A    E+        
Sbjct: 52  QEKYLILREVGEDEEAILLNDAELAACDVACLVYDSSDPNSFSYCA----EVYKKYFMLG 107

Query: 133 SIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL 165
            I  + +  K+DL + +  +     EF    GL
Sbjct: 108 EIPCLFVAAKADLDEQQQRAEVQPDEFCRKLGL 140

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.98
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.98
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.98
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.98
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.98
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.97
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.97
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.97
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.97
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.97
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.97
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.96
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.96
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.96
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.96
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
PLN00223	181	ADP-ribosylation factor; Provisional	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.95
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.95
PTZ00133	182	ADP-ribosylation factor; Provisional	99.95
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.95
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.95
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.95
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.94
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.94
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.94
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.94
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.94
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.94
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.94
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.94
PTZ00099	176	rab6; Provisional	99.94
PLN00023	334	GTP-binding protein; Provisional	99.94
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.93
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.93
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.93
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.92
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.92
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.92
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.92
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.92
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.92
PRK12299	335	obgE GTPase CgtA; Reviewed	99.91
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.91
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.91
COG1100	219	GTPase SAR1 and related small G proteins [General	99.91
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.9
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.9
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.9
PRK04213	201	GTP-binding protein; Provisional	99.9
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.9
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.89
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.89
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.88
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.88
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.88
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.88
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.88
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.88
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.88
KOG1673	205	consensus Ras GTPases [General function prediction	99.88
PRK15494	339	era GTPase Era; Provisional	99.87
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.87
PRK12297	424	obgE GTPase CgtA; Reviewed	99.87
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.87
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.87
PRK11058	426	GTPase HflX; Provisional	99.87
cd00881	189	GTP_translation_factor GTP translation factor fami	99.87
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.87
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
PRK03003	472	GTP-binding protein Der; Reviewed	99.86
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.86
PRK12296	500	obgE GTPase CgtA; Reviewed	99.86
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.86
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.85
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.85
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.85
PRK12298	390	obgE GTPase CgtA; Reviewed	99.85
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.84
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.84
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.84
PRK00089	292	era GTPase Era; Reviewed	99.84
COG1159	298	Era GTPase [General function prediction only]	99.84
CHL00189	742	infB translation initiation factor 2; Provisional	99.83
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.83
PRK05306	787	infB translation initiation factor IF-2; Validated	99.83
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.83
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.83
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.82
PRK00093	435	GTP-binding protein Der; Reviewed	99.82
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.82
PRK00093	435	GTP-binding protein Der; Reviewed	99.82
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
PRK05433	600	GTP-binding protein LepA; Provisional	99.82
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.82
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.81
COG2229	187	Predicted GTPase [General function prediction only	99.81
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.8
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.79
COG0486	454	ThdF Predicted GTPase [General function prediction	99.79
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.79
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.79
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.78
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.78
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.77
COG2262	411	HflX GTPases [General function prediction only]	99.77
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.77
PRK12317	425	elongation factor 1-alpha; Reviewed	99.77
PRK10218	607	GTP-binding protein; Provisional	99.77
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.77
PRK04004	586	translation initiation factor IF-2; Validated	99.76
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.76
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.75
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.75
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.75
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.75
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.75
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.74
COG0218	200	Predicted GTPase [General function prediction only	99.74
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.74
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.74
COG1084	346	Predicted GTPase [General function prediction only	99.73
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.72
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.72
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.72
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.72
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.71
PRK12736	394	elongation factor Tu; Reviewed	99.7
PRK12735	396	elongation factor Tu; Reviewed	99.69
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.69
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.69
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.68
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.68
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.68
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.66
CHL00071	409	tufA elongation factor Tu	99.66
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.66
PLN03126	478	Elongation factor Tu; Provisional	99.66
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.65
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.65
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.64
COG0536	369	Obg Predicted GTPase [General function prediction	99.63
KOG1145	683	consensus Mitochondrial translation initiation fac	99.63
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.63
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.63
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.63
PLN00043	447	elongation factor 1-alpha; Provisional	99.62
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.62
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.62
COG1163	365	DRG Predicted GTPase [General function prediction	99.62
PRK13351	687	elongation factor G; Reviewed	99.62
PRK00049	396	elongation factor Tu; Reviewed	99.61
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.61
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.61
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.6
PLN03127	447	Elongation factor Tu; Provisional	99.6
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.6
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.6
PTZ00141	446	elongation factor 1- alpha; Provisional	99.59
COG3596	296	Predicted GTPase [General function prediction only	99.58
PRK12739	691	elongation factor G; Reviewed	99.58
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.57
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.56
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.56
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.54
PRK09602	396	translation-associated GTPase; Reviewed	99.53
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.52
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.52
PRK09866	741	hypothetical protein; Provisional	99.52
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.52
PRK12740	668	elongation factor G; Reviewed	99.48
PRK00007	693	elongation factor G; Reviewed	99.48
PRK14845	1049	translation initiation factor IF-2; Provisional	99.45
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.44
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.43
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.42
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.42
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.42
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.42
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.41
PTZ00258	390	GTP-binding protein; Provisional	99.4
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.4
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.39
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.35
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.34
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.34
KOG0090	238	consensus Signal recognition particle receptor, be	99.34
PRK07560	731	elongation factor EF-2; Reviewed	99.32
PRK09601	364	GTP-binding protein YchF; Reviewed	99.32
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.31
PRK13768	253	GTPase; Provisional	99.31
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.31
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.31
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.31
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.31
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.31
PTZ00416	836	elongation factor 2; Provisional	99.29
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.28
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.26
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.25
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.24
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.23
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.22
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.22
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.22
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.19
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.17
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.16
KOG0410	410	consensus Predicted GTP binding protein [General f	99.15
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.14
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.12
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.12
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.12
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.11
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.11
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.09
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.09
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.06
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.04
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.03
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.03
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.01
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.98
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.96
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.95
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.94
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.93
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.93
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.9
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.89
PRK12289	352	GTPase RsgA; Reviewed	98.86
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.86
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.86
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.83
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.81
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.81
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.78
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.77
PRK12288	347	GTPase RsgA; Reviewed	98.74
PRK00098	298	GTPase RsgA; Reviewed	98.73
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.72
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.7
KOG2486	320	consensus Predicted GTPase [General function predi	98.7
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.67
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.61
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.61
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.61
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.6
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.6
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.54
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.53
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.51
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.5
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.5
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.47
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.47
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.43
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.42
COG1161	322	Predicted GTPases [General function prediction onl	98.41
KOG1143	591	consensus Predicted translation elongation factor	98.41
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.41
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.41
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.41
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.4
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.38
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.37
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.36
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.36
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.35
cd03112	158	CobW_like The function of this protein family is u	98.34
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.32
PRK10416	318	signal recognition particle-docking protein FtsY;	98.31
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.3
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.3
PRK14974	336	cell division protein FtsY; Provisional	98.29
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.27
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.27
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.27
PRK12288	347	GTPase RsgA; Reviewed	98.24
PRK01889	356	GTPase RsgA; Reviewed	98.21
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.2
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.2
KOG0460	449	consensus Mitochondrial translation elongation fac	98.19
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.17
COG3523	1188	IcmF Type VI protein secretion system component Va	98.17
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.16
PRK12289	352	GTPase RsgA; Reviewed	98.16
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.15
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.15
PRK13796	365	GTPase YqeH; Provisional	98.14
PRK13796	365	GTPase YqeH; Provisional	98.11
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.11
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.1
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.08
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.07
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.07
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.06
COG1162	301	Predicted GTPases [General function prediction onl	98.06
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.95
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.94
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.93
PRK00098	298	GTPase RsgA; Reviewed	97.92
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.91
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.87
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.86
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.86
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.84
cd03114	148	ArgK-like The function of this protein family is u	97.83
COG1162	301	Predicted GTPases [General function prediction onl	97.82
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.82
PRK13695	174	putative NTPase; Provisional	97.8
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.79
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.77
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.76
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.76
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.74
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.74
COG0523	323	Putative GTPases (G3E family) [General function pr	97.74
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.7
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.69
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.66
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.63
TIGR00959	428	ffh signal recognition particle protein. This mode	97.63
PRK10867	433	signal recognition particle protein; Provisional	97.63
KOG2484	435	consensus GTPase [General function prediction only	97.61
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.57
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.45
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.42
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.41
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.4
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.38
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.38
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.31
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.28
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.24
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.23
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.22
cd03111	106	CpaE_like This protein family consists of proteins	97.16
PRK08118	167	topology modulation protein; Reviewed	97.15
cd03110	179	Fer4_NifH_child This protein family's function is	97.14
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.12
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.11
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.11
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.1
PRK07261	171	topology modulation protein; Provisional	97.07
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.02
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.01
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.0
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.96
KOG1534	273	consensus Putative transcription factor FET5 [Tran	96.96
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	96.95
KOG1533	290	consensus Predicted GTPase [General function predi	96.95
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.95
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.94
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.9
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.9
PRK14737	186	gmk guanylate kinase; Provisional	96.9
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.89
PRK01889	356	GTPase RsgA; Reviewed	96.84
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.8
smart00382	148	AAA ATPases associated with a variety of cellular	96.79
cd02036	179	MinD Bacterial cell division requires the formatio	96.79
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.77
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.76
PRK10646	153	ADP-binding protein; Provisional	96.76
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.74
PRK14738	206	gmk guanylate kinase; Provisional	96.73
PF00004	132	AAA: ATPase family associated with various cellula	96.73
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.73
PRK06217	183	hypothetical protein; Validated	96.71
PRK04195	482	replication factor C large subunit; Provisional	96.69
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.69
PRK14530	215	adenylate kinase; Provisional	96.65
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	96.64
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.63
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.62
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.61
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.6
COG0802	149	Predicted ATPase or kinase [General function predi	96.58
PRK03839	180	putative kinase; Provisional	96.58
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.56
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.55
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.55
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.54
KOG4181	491	consensus Uncharacterized conserved protein [Funct	96.51
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.51
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.5
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.49
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.47
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.47
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.47
PRK13949	169	shikimate kinase; Provisional	96.46
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.45
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.44
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.44
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.43
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.43
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.42
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.42
PRK14531	183	adenylate kinase; Provisional	96.42
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.41
PRK14532	188	adenylate kinase; Provisional	96.41

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.8e-41  Score=248.89  Aligned_cols=176  Identities=48%  Similarity=0.813  Sum_probs=169.2

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  101 (237)
                      ....++.+||+|+|+.|+|||.|+.||.++.|...+..|+++++..+.+.++|+.+++++|||+|+++|+.....+++++
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHHH
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDT  180 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  180 (237)
                      +++|+|||+++.+||..+..|+.++..+...++|.++|+||+|+.+.+.++.++++.|+..++++ ++++||+++.++++
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHhhhccc
Q 026548          181 AFFRLLQEIYGAVSKKE  197 (237)
Q Consensus       181 ~~~~l~~~i~~~~~~~~  197 (237)
                      +|..+...+.++....-
T Consensus       163 ~F~~la~~lk~~~~~~~  179 (205)
T KOG0084|consen  163 AFLTLAKELKQRKGLHV  179 (205)
T ss_pred             HHHHHHHHHHHhcccCC
Confidence            99999999988877543

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.8e-39  Score=233.50  Aligned_cols=203  Identities=38%  Similarity=0.654  Sum_probs=176.0

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ......+||+++|..|+|||||+.+|..+.|++....+++.++.++.+.++|..+++.||||+|+++|+.+...|++++.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            34567899999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      ++|+|||++.+++|..+..|+.++..++. .++..++|+||+|....+.+..++...|++++++.|+++||++.+++...
T Consensus        86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            99999999999999999999999999887 77888999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccccccCCCccCCCCCCCCCcccccCCcccccccccccCccCC
Q 026548          182 FFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCSC  237 (237)
Q Consensus       182 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (237)
                      |+.++.+|++--.--+    .++       .+...++.++|.. +..--.++||+|
T Consensus       166 FeelveKIi~tp~l~~----~~n-------~~~~~~i~~~p~~-~~~~~~g~~Cs~  209 (209)
T KOG0080|consen  166 FEELVEKIIETPSLWE----EGN-------SSAGLDIASDPDG-EASAHQGGCCSC  209 (209)
T ss_pred             HHHHHHHHhcCcchhh----ccC-------CccccccccCCCc-ccccccCCccCC
Confidence            9999998876432111    111       1223444443332 223446789998

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-38  Score=239.53  Aligned_cols=179  Identities=44%  Similarity=0.791  Sum_probs=171.5

Q ss_pred             cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR   99 (237)
Q Consensus        20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   99 (237)
                      |...++++.+||+++|++|+|||+|+.+|..+.+...+..|.++++..+.+.+++..+.+++|||+|+++|..+...|++
T Consensus         4 ~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyr   83 (207)
T KOG0078|consen    4 MAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYR   83 (207)
T ss_pred             cccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHh
Confidence            34448889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      +|+++++|||+++..+|+++..|+..+..+...++|+++|+||+|+...++++.+..+++|.++|+.++||||++|.||+
T Consensus        84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~  163 (207)
T KOG0078|consen   84 GAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIE  163 (207)
T ss_pred             hcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence            99999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccc
Q 026548          180 TAFFRLLQEIYGAVSKKEL  198 (237)
Q Consensus       180 ~~~~~l~~~i~~~~~~~~~  198 (237)
                      ++|..|++.+.++..+.+.
T Consensus       164 eaF~~La~~i~~k~~~~~~  182 (207)
T KOG0078|consen  164 EAFLSLARDILQKLEDAEL  182 (207)
T ss_pred             HHHHHHHHHHHhhcchhhh
Confidence            9999999999998876543

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.1e-39  Score=237.24  Aligned_cols=172  Identities=46%  Similarity=0.769  Sum_probs=162.9

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...+||+|+|+.++|||||+.|+..+.|.....+|++..|..+.+.+++..+++.||||+|+++|..+...|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            35789999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|||+++.+||..++.|+..+.+...+++.+.|++||+|+.+.+++..+++..++...+..++++||+++.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999887788888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccc
Q 026548          186 LQEIYGAVSKKE  197 (237)
Q Consensus       186 ~~~i~~~~~~~~  197 (237)
                      .+.+........
T Consensus       163 a~~lp~~~~~~~  174 (200)
T KOG0092|consen  163 AEKLPCSDPQER  174 (200)
T ss_pred             HHhccCcccccc
Confidence            998877666443

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-38  Score=238.51  Aligned_cols=217  Identities=59%  Similarity=0.937  Sum_probs=192.1

Q ss_pred             cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR   99 (237)
Q Consensus        20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   99 (237)
                      ..+...++.+||+++|++++|||-|+.++..+.|...+.+|++.++....+.++++.++.+||||+|+++|+.....+++
T Consensus         6 ~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr   85 (222)
T KOG0087|consen    6 DKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR   85 (222)
T ss_pred             CCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      ++.++++|||++...+|+.+.+|+.+++.+.+.++++++|+||+||.+.+.+..++++.++.+.+..++++||.+..+++
T Consensus        86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe  165 (222)
T KOG0087|consen   86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVE  165 (222)
T ss_pred             ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHH
Confidence            99999999999999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccccCCCccCCCCCCCCCcccccCCcccccccccccCccC
Q 026548          180 TAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS  236 (237)
Q Consensus       180 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (237)
                      .+|..++..|+....++-..........+....+.++.+.+.+..+.+...+..||+
T Consensus       166 ~aF~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~cc~  222 (222)
T KOG0087|consen  166 KAFERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGCCS  222 (222)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCCCC
Confidence            999999999999998775554433222223344566666555555555555667774

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-37  Score=228.54  Aligned_cols=173  Identities=51%  Similarity=0.856  Sum_probs=166.7

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      ...+.+|++++|+.|+|||+|+.+++...|.+.+..|.++++..+.+++++..+++++|||+|++.|++....|++++-+
T Consensus         2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G   81 (216)
T KOG0098|consen    2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG   81 (216)
T ss_pred             CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      +|+|||+++.++|..+..|+..++.+...++.++|++||+|+...+.+..++...||+++|..++++||+++.||+++|.
T Consensus        82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence            99999999999999999999999999878999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcc
Q 026548          184 RLLQEIYGAVSKK  196 (237)
Q Consensus       184 ~l~~~i~~~~~~~  196 (237)
                      .....|+......
T Consensus       162 nta~~Iy~~~q~g  174 (216)
T KOG0098|consen  162 NTAKEIYRKIQDG  174 (216)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988743

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-37  Score=229.20  Aligned_cols=171  Identities=37%  Similarity=0.660  Sum_probs=159.8

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      ..-+..||+++|+.++||||||.+++.+.|+..|.+|+++++..+.+.+.+..+.++||||+|+++|+.+...|++++.+
T Consensus        18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v   97 (221)
T KOG0094|consen   18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   97 (221)
T ss_pred             ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence            34445999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      +|+|||+++..+|+...+|++.+....+. ++.+++|+||.||.+++++..++....++++++.|+++||+.|.||..+|
T Consensus        98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF  177 (221)
T KOG0094|consen   98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLF  177 (221)
T ss_pred             EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence            99999999999999999999999998875 58899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 026548          183 FRLLQEIYGAVS  194 (237)
Q Consensus       183 ~~l~~~i~~~~~  194 (237)
                      ..|...+.+...
T Consensus       178 rrIaa~l~~~~~  189 (221)
T KOG0094|consen  178 RRIAAALPGMEV  189 (221)
T ss_pred             HHHHHhccCccc
Confidence            887666655544

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=7.1e-37  Score=225.10  Aligned_cols=173  Identities=33%  Similarity=0.627  Sum_probs=160.3

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ..+...+||+++|++|+|||||+++|...+|...+..|++.++..+.+.+++..+.++||||+|+++|.++...+++++|
T Consensus         4 ~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaD   83 (210)
T KOG0394|consen    4 LRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGAD   83 (210)
T ss_pred             cCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCc
Confidence            34556899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCC--CcCCCHHHHHHHHHHcC-CeEEEEcCCCC
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVD--MRAVSAEDAVEFAEDQG-LFFSEASALNG  175 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  175 (237)
                      .++++||++++.+|+.+..|.+++.....    ...|+||++||+|+.+  .++++.+.++.++...| +||||+||+..
T Consensus        84 cCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~  163 (210)
T KOG0394|consen   84 CCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA  163 (210)
T ss_pred             eEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence            99999999999999999999999887765    4589999999999865  37899999999999765 89999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhhc
Q 026548          176 DNVDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       176 ~gi~~~~~~l~~~i~~~~~~  195 (237)
                      .+|+++|+.+.+.+++....
T Consensus       164 ~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  164 TNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             ccHHHHHHHHHHHHHhccch
Confidence            99999999999988877653

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.1e-35  Score=230.59  Aligned_cols=167  Identities=41%  Similarity=0.755  Sum_probs=153.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +.|+++|..|+|||||+++|..+.+...+.++.+.++..+.+.+++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46999999999999999999999998888899998988888999998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      |++++.+++.+..|+..+......++|++||+||+|+...+++..+++.++++++ ++.|++|||++|.||+++|.++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887776568999999999999877888888899999885 788999999999999999999999


Q ss_pred             HHHHhhhc
Q 026548          188 EIYGAVSK  195 (237)
Q Consensus       188 ~i~~~~~~  195 (237)
                      .+.+....
T Consensus       161 ~~~~~~~~  168 (202)
T cd04120         161 DILKKMPL  168 (202)
T ss_pred             HHHHhCcc
Confidence            98876543

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=5.5e-35  Score=231.27  Aligned_cols=173  Identities=65%  Similarity=1.027  Sum_probs=158.3

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      .++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            44679999999999999999999999998878889999998888899999889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988876668999999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHhhhccc
Q 026548          185 LLQEIYGAVSKKE  197 (237)
Q Consensus       185 l~~~i~~~~~~~~  197 (237)
                      +++.+.+....+.
T Consensus       169 l~~~i~~~~~~~~  181 (216)
T PLN03110        169 ILLEIYHIISKKA  181 (216)
T ss_pred             HHHHHHHHhhccc
Confidence            9999988755433

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=6.5e-35  Score=225.75  Aligned_cols=169  Identities=36%  Similarity=0.644  Sum_probs=155.5

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      .+..+||+|+|..|+|||||+.+|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++.+|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            34679999999999999999999999988877778888888878888899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |+|||++++.+++.+..|+..+.... .++|++||+||.|+.+.+.+..++++++++.++++|++|||++|.||+++|++
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999997765 58999999999999887788899999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 026548          185 LLQEIYGAVS  194 (237)
Q Consensus       185 l~~~i~~~~~  194 (237)
                      +++.+..+-.
T Consensus       162 l~~~i~~~~~  171 (189)
T cd04121         162 LARIVLMRHG  171 (189)
T ss_pred             HHHHHHHhcC
Confidence            9998876444

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.1e-34  Score=227.23  Aligned_cols=171  Identities=35%  Similarity=0.638  Sum_probs=152.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      +||+|+|++|+|||||+++|.++.+...+.++.+.++....+.++ +..+.+.||||||++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999888888998888887888887 7788999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHA----DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF  182 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~  182 (237)
                      ||++++.+++.+..|+..+....    ..++|++||+||+|+...+....+++.++++..+ ..++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998876542    2578999999999997666778889999999998 689999999999999999


Q ss_pred             HHHHHHHHHhhhccccc
Q 026548          183 FRLLQEIYGAVSKKELE  199 (237)
Q Consensus       183 ~~l~~~i~~~~~~~~~~  199 (237)
                      ++|++.+.+........
T Consensus       161 ~~l~~~l~~~~~~~~~~  177 (201)
T cd04107         161 RFLVKNILANDKNLQQA  177 (201)
T ss_pred             HHHHHHHHHhchhhHhh
Confidence            99999998776554433

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-35  Score=209.87  Aligned_cols=180  Identities=41%  Similarity=0.714  Sum_probs=169.8

Q ss_pred             hcccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHh
Q 026548           17 QENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSA   96 (237)
Q Consensus        17 ~~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   96 (237)
                      +....++..++.+|++++|+..+|||||+.++.+..+.+.+.+|.++++..+.+.-....+.+++|||+|++.|+.+...
T Consensus        10 ~~~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTa   89 (193)
T KOG0093|consen   10 SKDSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTA   89 (193)
T ss_pred             ccccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHH
Confidence            34456678889999999999999999999999999999999999999999998888888899999999999999999999


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548           97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD  176 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  176 (237)
                      ++++++++|++||+++.+++..+..|.-++..++-.+.|+|+++||||+.+++.++.+..+.++.++|..||++||+.+.
T Consensus        90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Ni  169 (193)
T KOG0093|consen   90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENI  169 (193)
T ss_pred             HhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccc
Confidence            99999999999999999999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhcc
Q 026548          177 NVDTAFFRLLQEIYGAVSKK  196 (237)
Q Consensus       177 gi~~~~~~l~~~i~~~~~~~  196 (237)
                      ++.++|+.++..|-+.+..+
T Consensus       170 nVk~~Fe~lv~~Ic~kmses  189 (193)
T KOG0093|consen  170 NVKQVFERLVDIICDKMSES  189 (193)
T ss_pred             cHHHHHHHHHHHHHHHhhhh
Confidence            99999999999998877643

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.1e-33  Score=219.39  Aligned_cols=169  Identities=45%  Similarity=0.749  Sum_probs=153.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999988778888888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      |++++.++..+..|+..+.......+|++|++||.|+.+...+..+++..++...+++++++||+++.|++++|.+|++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888765678999999999998777778888888999899999999999999999999999999


Q ss_pred             HHHhhhccc
Q 026548          189 IYGAVSKKE  197 (237)
Q Consensus       189 i~~~~~~~~  197 (237)
                      +..+....+
T Consensus       161 ~~~~~~~~~  169 (188)
T cd04125         161 IIKRLEEQE  169 (188)
T ss_pred             HHHHhhcCc
Confidence            987655443

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=6.6e-34  Score=225.06  Aligned_cols=164  Identities=36%  Similarity=0.600  Sum_probs=149.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECC-EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888889999888888888864 568899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      ||++++++++.+..|+..+.....   .++|+++|+||+|+.+.+.+..++..+++..++++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999887653   35789999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 026548          185 LLQEIYGA  192 (237)
Q Consensus       185 l~~~i~~~  192 (237)
                      |++.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99998875

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.9e-35  Score=209.08  Aligned_cols=170  Identities=46%  Similarity=0.778  Sum_probs=161.6

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ...++.++.+++|++|+|||+|+.++..+.|...|..|++.++..+.+.++|..++++||||+|++.|+.+...++++.+
T Consensus         3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth   82 (198)
T KOG0079|consen    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH   82 (198)
T ss_pred             ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      ++++|||+++.++|.++.+|++.+...+ +.+|-++|+||.|.++.+.+..++++.|+...|+.+|++|++...+++..|
T Consensus        83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF  161 (198)
T KOG0079|consen   83 GVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF  161 (198)
T ss_pred             eEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence            9999999999999999999999999988 489999999999999988999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 026548          183 FRLLQEIYGAV  193 (237)
Q Consensus       183 ~~l~~~i~~~~  193 (237)
                      .-|.+.++...
T Consensus       162 ~cit~qvl~~k  172 (198)
T KOG0079|consen  162 HCITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHHH
Confidence            99998877665

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=2.1e-33  Score=222.98  Aligned_cols=171  Identities=23%  Similarity=0.407  Sum_probs=151.8

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      .....+||+|+|+.|+|||+|+++|..+.+...+.++++..+. ..+.+++..+.+.||||+|++.|..++..+++++|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            3345789999999999999999999999999888899876664 467889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CcCCCHHHHHHHHHHcCC-eEEE
Q 026548          104 AVVVYDITKRQSFDH-VARWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGL-FFSE  169 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~  169 (237)
                      +|+|||++++.+|+. +..|+..+.... .+.|++||+||+|+..            .+.+..+++.++++++++ .|++
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E  166 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE  166 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence            999999999999998 489999988765 5789999999999864            256889999999999998 6999


Q ss_pred             EcCCCCC-CHHHHHHHHHHHHHHhhhcc
Q 026548          170 ASALNGD-NVDTAFFRLLQEIYGAVSKK  196 (237)
Q Consensus       170 ~Sa~~~~-gi~~~~~~l~~~i~~~~~~~  196 (237)
                      |||++|. ||+++|..++..+++.....
T Consensus       167 tSAktg~~~V~e~F~~~~~~~~~~~~~~  194 (232)
T cd04174         167 CSAFTSEKSIHSIFRSASLLCLNKLSPP  194 (232)
T ss_pred             ccCCcCCcCHHHHHHHHHHHHHHhcccc
Confidence            9999997 89999999999988765543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=3.3e-33  Score=220.23  Aligned_cols=170  Identities=51%  Similarity=0.870  Sum_probs=156.0

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      .++.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            34679999999999999999999999988888888888888888888999888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |+|||++++.++..+..|+..+.......+|+++++||+|+...+.+..++..++++.++++++++||+++.|++++|.+
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999887665568999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 026548          185 LLQEIYGAVS  194 (237)
Q Consensus       185 l~~~i~~~~~  194 (237)
                      +++.++++..
T Consensus       163 l~~~~~~~~~  172 (210)
T PLN03108        163 TAAKIYKKIQ  172 (210)
T ss_pred             HHHHHHHHhh
Confidence            9999987765

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.7e-33  Score=213.92  Aligned_cols=164  Identities=51%  Similarity=0.892  Sum_probs=151.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999998888888888888878888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      ||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++...++++++|||++|.|++++|..+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887776677999999999999887778888999999999999999999999999999999998


Q ss_pred             HHHH
Q 026548          188 EIYG  191 (237)
Q Consensus       188 ~i~~  191 (237)
                      .+++
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            8865

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-34  Score=205.76  Aligned_cols=181  Identities=48%  Similarity=0.801  Sum_probs=171.9

Q ss_pred             cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR   99 (237)
Q Consensus        20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   99 (237)
                      |..+.+++.+|++++|+.|+|||.|+++++..++......++++++..+.+.+.++.++++||||+|+++|++..+.+++
T Consensus         1 mmsEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYR   80 (214)
T KOG0086|consen    1 MMSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYR   80 (214)
T ss_pred             CcchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhc
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      ++-+.++|||+++.++|+.+..|+...+.....++-+++++||.|+...++++..++..|+.+..+.++++|+++|.+++
T Consensus        81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVE  160 (214)
T KOG0086|consen   81 GAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE  160 (214)
T ss_pred             cccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence            99999999999999999999999999999888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccccc
Q 026548          180 TAFFRLLQEIYGAVSKKELEC  200 (237)
Q Consensus       180 ~~~~~l~~~i~~~~~~~~~~~  200 (237)
                      ++|-...+.|+.+....|..+
T Consensus       161 EaFl~c~~tIl~kIE~GElDP  181 (214)
T KOG0086|consen  161 EAFLKCARTILNKIESGELDP  181 (214)
T ss_pred             HHHHHHHHHHHHHHhhcCCCH
Confidence            999999999999988766553

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.8e-33  Score=213.03  Aligned_cols=166  Identities=47%  Similarity=0.842  Sum_probs=152.8

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            35789999999999999999999999998888899888888788888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|||++++.++..+..|+..+......++|++||+||+|+.+.+....+++.+++..++++++++||++|.|++++|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887765689999999999998777778888889999999999999999999999999999


Q ss_pred             HHHHHH
Q 026548          186 LQEIYG  191 (237)
Q Consensus       186 ~~~i~~  191 (237)
                      ++.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            998865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-34  Score=204.51  Aligned_cols=208  Identities=38%  Similarity=0.651  Sum_probs=178.6

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      ++...+||+++|..|+|||.|++++..+-|++....++++++-.+.+.+++..++++||||+|+++|++....+++.+++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      +|+|||++-..+|+-+..|+.++..+...++..|+|+||+|+.+.++++.....+|++.....|+++||+..++++.+|.
T Consensus        83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence            99999999999999999999999999888888999999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccccccCCCccCCCCCCCCCcccccCCcccccccccccCccC
Q 026548          184 RLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS  236 (237)
Q Consensus       184 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (237)
                      .++-.+.......+.........+...-.|.++.+.+-.+     -+-..||.
T Consensus       163 ~~a~rli~~ar~~d~v~~~~a~a~~~~seg~si~l~s~aq-----t~~~~cc~  210 (213)
T KOG0095|consen  163 DLACRLISEARQNDLVNNVSAPAPNSSSEGKSIKLISYAQ-----TQLLTCCN  210 (213)
T ss_pred             HHHHHHHHHHHhccchhhccccCccccCCCCcccchhHHH-----HHHhcccc
Confidence            8887766655544444333332222334466776655433     23345774

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=7.2e-33  Score=218.34  Aligned_cols=170  Identities=48%  Similarity=0.812  Sum_probs=153.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE-CCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      .+||+|+|++|+|||||+++|.+..+...+.++.+.++..+.+.+ ++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            579999999999999999999999988888888888888887777 4667889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      |||++++.+++.+..|+..+..... ..+|++||+||.|+...+.+..++..++++.++++++++||++|.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999876644 467889999999998777788888999999999999999999999999999999


Q ss_pred             HHHHHHhhhccc
Q 026548          186 LQEIYGAVSKKE  197 (237)
Q Consensus       186 ~~~i~~~~~~~~  197 (237)
                      ++.++++....+
T Consensus       162 ~~~~~~~~~~~~  173 (211)
T cd04111         162 TQEIYERIKRGE  173 (211)
T ss_pred             HHHHHHHhhcCC
Confidence            999988876554

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=9e-35  Score=208.85  Aligned_cols=208  Identities=32%  Similarity=0.552  Sum_probs=182.1

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      ....+||+++|..=+|||||+-+++.++|.....+|....+..+.+.+.+....+.||||+|+++|-.+-..|+++++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            34579999999999999999999999999888888877788888888988889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      ++|||+++.++|+.++.|..+++...+..+-++||+||+|+.+++.++.+++..+++..|+.|+++||+.+.||.++|+.
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~  169 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES  169 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence            99999999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccccCCCccCCCCCCCCCcccccCCcccccccccccCccC
Q 026548          185 LLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS  236 (237)
Q Consensus       185 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (237)
                      |...+.+...-++...++.+.++|....+..+    .+..-+-..-.++||+
T Consensus       170 Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~----iD~e~~a~~sg~~CC~  217 (218)
T KOG0088|consen  170 LTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRL----IDNEAEAERSGKRCCR  217 (218)
T ss_pred             HHHHHHHHhhhcccccCCcCCCCCCcccchhc----cCCCcccccccCCccC
Confidence            99999999998888888877664443333222    2222133445566996

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=5.1e-34  Score=205.95  Aligned_cols=179  Identities=45%  Similarity=0.770  Sum_probs=163.9

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE-CCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ...+.++++|+|+.-+|||+|++.+..++++...+||+++++..+.+.+ +|..++++||||+|+++|++.+..+++++-
T Consensus         4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv   83 (213)
T KOG0091|consen    4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV   83 (213)
T ss_pred             ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence            4457899999999999999999999999999999999999998887776 788899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                      ++++|||+++..+|+.+..|+.+...+..  .++-+.+|++|+|+...++++.+++.+++..+|+.|+++|+++|.||++
T Consensus        84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeE  163 (213)
T KOG0091|consen   84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE  163 (213)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence            99999999999999999999999777665  3455679999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccccccCC
Q 026548          181 AFFRLLQEIYGAVSKKELECGN  202 (237)
Q Consensus       181 ~~~~l~~~i~~~~~~~~~~~~~  202 (237)
                      +|..|.+.++..+...+.+...
T Consensus       164 AF~mlaqeIf~~i~qGeik~ed  185 (213)
T KOG0091|consen  164 AFDMLAQEIFQAIQQGEIKLED  185 (213)
T ss_pred             HHHHHHHHHHHHHhcCceeeee
Confidence            9999999999998876555433

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.3e-32  Score=215.09  Aligned_cols=168  Identities=45%  Similarity=0.741  Sum_probs=152.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      +..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++|
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            45799999999999999999999999988778888888888888888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|||++++.+++.+..|++.+.... ...|++||+||+|+.....+..++..+++...+++++++||++|.||+++|++|
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l  162 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI  162 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence            9999999999999999999987765 578999999999998766777888889999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q 026548          186 LQEIYGAVS  194 (237)
Q Consensus       186 ~~~i~~~~~  194 (237)
                      .+.++....
T Consensus       163 ~~~~~~~~~  171 (199)
T cd04110         163 TELVLRAKK  171 (199)
T ss_pred             HHHHHHhhh
Confidence            998876533

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=5.2e-33  Score=214.06  Aligned_cols=162  Identities=28%  Similarity=0.491  Sum_probs=146.1

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|+
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            468999999999999999999999999888888887655 4567889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CcCCCHHHHHHHHHHcCC-eEEEEcC
Q 026548          107 VYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGL-FFSEASA  172 (237)
Q Consensus       107 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa  172 (237)
                      |||++++.+++.+ ..|+..+.... .+.|++||+||+|+..            .+.+..+++.++++++++ +|++|||
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  161 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  161 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            9999999999997 79999988766 5799999999999854            246889999999999996 8999999


Q ss_pred             CCCCC-HHHHHHHHHHHHH
Q 026548          173 LNGDN-VDTAFFRLLQEIY  190 (237)
Q Consensus       173 ~~~~g-i~~~~~~l~~~i~  190 (237)
                      ++|.| |+++|..+++.++
T Consensus       162 k~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         162 LQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            99998 9999999988654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=6.3e-33  Score=218.99  Aligned_cols=165  Identities=32%  Similarity=0.493  Sum_probs=142.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|.+|+|||||+++|..+.+.. +.++.+.++....+    ..+.+.||||+|++.+..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999999864 45777665544332    3577899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------------------CcCCCHHHHHHHHHHcC-----
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD-------------------MRAVSAEDAVEFAEDQG-----  164 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  164 (237)
                      |++++.+++.+..|+..+......++|++||+||+|+..                   .+.+..+++.+++++.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999988887765556799999999999865                   56788899999999876     


Q ss_pred             ---------CeEEEEcCCCCCCHHHHHHHHHHHHHHhhhcccc
Q 026548          165 ---------LFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL  198 (237)
Q Consensus       165 ---------~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~  198 (237)
                               ++|++|||++|.||+++|..+++.+++.......
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~  198 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA  198 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence                     6899999999999999999999998877765543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=6.7e-33  Score=215.32  Aligned_cols=165  Identities=34%  Similarity=0.549  Sum_probs=145.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      ||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999988777777776444 3456678888889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          110 ITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      +++..+++.+..|+..+.....   .++|++||+||+|+...+.+..++..+++...+++++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999998876542   4789999999999977777778888889998999999999999999999999999


Q ss_pred             HHHHHhhhc
Q 026548          187 QEIYGAVSK  195 (237)
Q Consensus       187 ~~i~~~~~~  195 (237)
                      +.+.++...
T Consensus       160 ~~l~~~~~~  168 (190)
T cd04144         160 RALRQQRQG  168 (190)
T ss_pred             HHHHHhhcc
Confidence            988755553

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=7.5e-33  Score=211.70  Aligned_cols=164  Identities=29%  Similarity=0.452  Sum_probs=147.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999998877778876444 45577888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ||++++.+++.+..|+..+..... .++|++||+||+|+.+.+.+..++..++++..+++|++|||++|.||+++|++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            999999999999999888776543 5799999999999987778888899999999999999999999999999999999


Q ss_pred             HHHHHh
Q 026548          187 QEIYGA  192 (237)
Q Consensus       187 ~~i~~~  192 (237)
                      +.+...
T Consensus       161 ~~~~~~  166 (172)
T cd04141         161 REIRRK  166 (172)
T ss_pred             HHHHHh
Confidence            887763

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.4e-32  Score=213.75  Aligned_cols=165  Identities=42%  Similarity=0.747  Sum_probs=148.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      +||+|+|++|+|||||+++|....+.. .+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999998764 5667777777777788888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      ||+++..+++.+..|+..+......++|++||+||+|+...+.+..++...++..++++|+++||++|.|++++|.+|++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876668999999999999766677778888999999999999999999999999999999


Q ss_pred             HHHHhh
Q 026548          188 EIYGAV  193 (237)
Q Consensus       188 ~i~~~~  193 (237)
                      .+.+..
T Consensus       161 ~~~~~~  166 (191)
T cd04112         161 ELKHRK  166 (191)
T ss_pred             HHHHhc
Confidence            987664

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.3e-32  Score=211.74  Aligned_cols=167  Identities=42%  Similarity=0.728  Sum_probs=150.0

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC----------CEEEEEEEEeCCCcchhchhhH
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN----------GKIIKAQIWDTAGQERYRAVTS   95 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~   95 (237)
                      ++.+||+++|++|+|||||+++|....+...+.++.+.++....+.+.          +..+.+.||||||++.+..++.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            357999999999999999999999999988888888888776666554          4568899999999999999999


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCC
Q 026548           96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN  174 (237)
Q Consensus        96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  174 (237)
                      .+++++|++|+|||++++.++..+..|+..+..... .+.|++||+||+|+.+.+.+..+++.+++...+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            999999999999999999999999999999876543 5789999999999987777888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q 026548          175 GDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       175 ~~gi~~~~~~l~~~i~~~  192 (237)
                      |.|++++|++|++.++++
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999988765

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.9e-32  Score=208.10  Aligned_cols=163  Identities=44%  Similarity=0.745  Sum_probs=148.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            69999999999999999999999988888888887777777777888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      |++++.+++.+..|+..+........|++||+||+|+...+....++..+++..++++++++||+++.|++++|+++.+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999877665679999999999998777777888888999999999999999999999999999887


Q ss_pred             HHH
Q 026548          189 IYG  191 (237)
Q Consensus       189 i~~  191 (237)
                      +.+
T Consensus       162 ~~~  164 (165)
T cd01865         162 ICD  164 (165)
T ss_pred             HHh
Confidence            654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=8.7e-33  Score=211.61  Aligned_cols=159  Identities=33%  Similarity=0.576  Sum_probs=143.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888888887655 456778888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCc----------CCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 026548          109 DITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDMR----------AVSAEDAVEFAEDQGL-FFSEASALNGD  176 (237)
Q Consensus       109 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  176 (237)
                      |++++.+|+.+ ..|+..+.... .++|++||+||+|+.+.+          .+..+++.++++..++ .|++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999987765 579999999999996532          4788899999999998 59999999999


Q ss_pred             CHHHHHHHHHHHH
Q 026548          177 NVDTAFFRLLQEI  189 (237)
Q Consensus       177 gi~~~~~~l~~~i  189 (237)
                      ||+++|+.+++.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999875

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=213.43  Aligned_cols=166  Identities=37%  Similarity=0.566  Sum_probs=148.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+++|++|+|||||+++|..+.+...+.++.+..+ .+.+.+++..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv   83 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV   83 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence            58999999999999999999999998877777776555 46677888888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ||++++.+++.+..|+..+..... .++|++||+||+|+.+.+.+..+++.+++..+++++++|||++|.|++++|.+|+
T Consensus        84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~  163 (189)
T PTZ00369         84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV  163 (189)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            999999999999999998877643 5799999999999977667777788888888899999999999999999999999


Q ss_pred             HHHHHhhh
Q 026548          187 QEIYGAVS  194 (237)
Q Consensus       187 ~~i~~~~~  194 (237)
                      +.+.+..+
T Consensus       164 ~~l~~~~~  171 (189)
T PTZ00369        164 REIRKYLK  171 (189)
T ss_pred             HHHHHHhh
Confidence            98876544

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=2e-32  Score=208.03  Aligned_cols=164  Identities=48%  Similarity=0.835  Sum_probs=150.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            57999999999999999999999998888888888888888888888888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      ||+++++++..+..|+..+......+.|+++++||.|+.....+..+++.+++..++++++++||++|.|++++|.+|++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999988776567999999999999777777888899999999999999999999999999999998


Q ss_pred             HHHH
Q 026548          188 EIYG  191 (237)
Q Consensus       188 ~i~~  191 (237)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T cd01869         162 EIKK  165 (166)
T ss_pred             HHHh
Confidence            8753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.6e-32  Score=207.64  Aligned_cols=160  Identities=43%  Similarity=0.766  Sum_probs=148.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999998888889888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      |++++.+++.+..|+..+......++|+++|+||.|+.+.+.+..+++..+++.++++|++|||++|.|++++|.+|++.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999887765679999999999998777788889999999999999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=2.1e-32  Score=206.91  Aligned_cols=161  Identities=41%  Similarity=0.752  Sum_probs=153.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      ||+|+|++++|||||+++|.++.+...+.++.+.+.....+.+++..+.+.|||++|++.+..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999898999899999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          110 ITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      ++++.+++.+..|+..+......++|++|++||.|+.+.+.+..++++++++.++++|++||++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998866799999999999988889999999999999999999999999999999999999987


Q ss_pred             H
Q 026548          190 Y  190 (237)
Q Consensus       190 ~  190 (237)
                      +
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=2.7e-32  Score=207.05  Aligned_cols=162  Identities=32%  Similarity=0.639  Sum_probs=148.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888899998888888888898999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD-----SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      |++++.+++.+..|+..+.....     .+.|+++|+||+|+.+......++...++...+++++++||++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999877653     4699999999999976566778888888888899999999999999999999


Q ss_pred             HHHHHHH
Q 026548          184 RLLQEIY  190 (237)
Q Consensus       184 ~l~~~i~  190 (237)
                      +|++.++
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-32  Score=194.33  Aligned_cols=190  Identities=46%  Similarity=0.797  Sum_probs=176.0

Q ss_pred             CCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcC
Q 026548           21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG  100 (237)
Q Consensus        21 ~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~  100 (237)
                      .+.+..+.+|.+++|+-|+|||.|+..+...+|...-..++++++..+.+.+.|..+++++|||+|+++|+...+.++++
T Consensus         4 ~pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrg   83 (215)
T KOG0097|consen    4 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG   83 (215)
T ss_pred             CccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            45678889999999999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          101 ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                      +-+.++|||++.+.++..+..|+...+....++..+++++||.|+...+.+..+++++|+.+.|..++++||++|.++++
T Consensus        84 aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nved  163 (215)
T KOG0097|consen   84 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVED  163 (215)
T ss_pred             ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHH
Confidence            99999999999999999999999998888878888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccccccCCCccCCCCC
Q 026548          181 AFFRLLQEIYGAVSKKELECGNGKVDGPPM  210 (237)
Q Consensus       181 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~  210 (237)
                      +|-...++|+..............+...++
T Consensus       164 afle~akkiyqniqdgsldlnaaesgvq~k  193 (215)
T KOG0097|consen  164 AFLETAKKIYQNIQDGSLDLNAAESGVQHK  193 (215)
T ss_pred             HHHHHHHHHHHhhhcCcccccchhccCcCC
Confidence            999999999999988766666555554444

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.8e-32  Score=210.56  Aligned_cols=160  Identities=26%  Similarity=0.483  Sum_probs=143.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..+...+++++|++|+||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            68999999999999999999999998888888876654 56788899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CcCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 026548          109 DITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGL-FFSEASALN  174 (237)
Q Consensus       109 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  174 (237)
                      |++++.+++.+ ..|+..+.... .++|++||+||+|+..            .+.+..+++.++++++++ +|++|||++
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            99999999996 79999988776 5799999999999854            245788999999999997 799999999


Q ss_pred             CCC-HHHHHHHHHHHHH
Q 026548          175 GDN-VDTAFFRLLQEIY  190 (237)
Q Consensus       175 ~~g-i~~~~~~l~~~i~  190 (237)
                      |.+ |+++|..+++..+
T Consensus       160 ~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         160 SEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            995 9999999988654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=5.4e-32  Score=206.17  Aligned_cols=166  Identities=51%  Similarity=0.878  Sum_probs=152.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      +..+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            46789999999999999999999999988888888888888888888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|||++++.+++.+..|+..+......++|++||+||.|+.....+..+++..++...++.++++||+++.|++++|.++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887765689999999999998666778888889999999999999999999999999999


Q ss_pred             HHHHHH
Q 026548          186 LQEIYG  191 (237)
Q Consensus       186 ~~~i~~  191 (237)
                      ++.+++
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            988765

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=4.2e-32  Score=205.95  Aligned_cols=163  Identities=69%  Similarity=1.088  Sum_probs=150.1

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            46899999999999999999999999888888998888888888889888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |||++++.++..+..|+..+......++|++||+||.|+...+....++...++...+++++++||++|.|++++|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999998887655799999999999987777788888999988899999999999999999999998


Q ss_pred             HHH
Q 026548          187 QEI  189 (237)
Q Consensus       187 ~~i  189 (237)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            775

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=3.6e-32  Score=211.31  Aligned_cols=163  Identities=28%  Similarity=0.513  Sum_probs=143.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+++|+.|+|||||+.+|..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            47999999999999999999999999888888887554 34567888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------CCCHHHHHHHHHHcC-CeEEEEcCC
Q 026548          108 YDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMR------------AVSAEDAVEFAEDQG-LFFSEASAL  173 (237)
Q Consensus       108 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~  173 (237)
                      ||++++.+++.+. .|+..+.... .++|++||+||.|+.+..            .+..+++.++++.++ ++|++|||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999996 5888776654 579999999999986532            356778899999998 589999999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q 026548          174 NGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i~~~  192 (237)
                      +|.||+++|+++++.+...
T Consensus       161 ~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             CCCCHHHHHHHHHHHHhcc
Confidence            9999999999999887653

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.1e-31  Score=212.01  Aligned_cols=165  Identities=24%  Similarity=0.446  Sum_probs=144.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|++|+|||||+++|..+.+...+.|+++..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            68999999999999999999999998888899876654 56778999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 026548          109 DITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEASALN  174 (237)
Q Consensus       109 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  174 (237)
                      |++++++++.+ ..|...+.... .++|++||+||+|+...            ..+..+++..++++.++ .|+||||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            99999999998 46776665544 67999999999998542            13677889999999995 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHHhhhc
Q 026548          175 GDN-VDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       175 ~~g-i~~~~~~l~~~i~~~~~~  195 (237)
                      +.+ |+++|+.++...+.+...
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccCC
Confidence            984 999999999987776554

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=6.8e-32  Score=208.10  Aligned_cols=162  Identities=25%  Similarity=0.484  Sum_probs=143.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|+.|+|||||+++|..+.+...+.++.+.++..+.+.+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888899998888888889998899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----CcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD-----MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      |++++.+++.+..|+..+........| ++|+||+|+..     ......++..++++..++++++|||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998876555567 67899999852     111224567788888999999999999999999999


Q ss_pred             HHHHHHHH
Q 026548          184 RLLQEIYG  191 (237)
Q Consensus       184 ~l~~~i~~  191 (237)
                      ++.+.+++
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99998875

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.1e-31  Score=203.73  Aligned_cols=162  Identities=46%  Similarity=0.801  Sum_probs=147.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +.+||+|+|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999998888787888888888888888888889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      |||++++.+++.+..|+..+......++|+++|+||+|+...+....+++.++++..+. .++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999876657899999999999987777778888899998886 58999999999999999998


Q ss_pred             HHH
Q 026548          186 LQE  188 (237)
Q Consensus       186 ~~~  188 (237)
                      .+.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=8.2e-32  Score=203.71  Aligned_cols=160  Identities=34%  Similarity=0.541  Sum_probs=141.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.||||||++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            6999999999999999999999988777777765 445567778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      |++++.+++.+..|+..+..... .++|++||+||+|+...+.+..++...+++.++++++++||++|.|++++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999999877643 57999999999999766667777788888888899999999999999999999987


Q ss_pred             HH
Q 026548          188 EI  189 (237)
Q Consensus       188 ~i  189 (237)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.9e-31  Score=201.78  Aligned_cols=164  Identities=56%  Similarity=0.911  Sum_probs=150.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999988888788888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      |++++.+++.+..|+..+......++|+++++||+|+...+....+.+.+++...+++++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887766689999999999987766778888999999999999999999999999999999998


Q ss_pred             HHHh
Q 026548          189 IYGA  192 (237)
Q Consensus       189 i~~~  192 (237)
                      +.++
T Consensus       161 ~~~~  164 (164)
T smart00175      161 ILKR  164 (164)
T ss_pred             HhhC
Confidence            8653

Rab GTPases are implicated in vesicle trafficking.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=1.8e-31  Score=201.67  Aligned_cols=160  Identities=52%  Similarity=0.888  Sum_probs=147.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      |++++.++..+..|+..+......++|++|++||.|+........+++..++...++.++++||+++.|++++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877766789999999999998777778888999999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=4.2e-31  Score=205.61  Aligned_cols=165  Identities=35%  Similarity=0.667  Sum_probs=145.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      +||+|+|++|+|||||+++|+.+.+.. .+.++.+..+....+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998874 5678887777778888999989999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----cCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM----RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      ||++++.+++.+..|+..+.... .++|+++|+||+|+...    +.+..+++.+++...+++++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999887654 47999999999998532    34556678888888899999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 026548          184 RLLQEIYGAVS  194 (237)
Q Consensus       184 ~l~~~i~~~~~  194 (237)
                      ++++.+.++..
T Consensus       160 ~i~~~~~~~~~  170 (193)
T cd04118         160 KVAEDFVSRAN  170 (193)
T ss_pred             HHHHHHHHhcc
Confidence            99998876553

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.6e-31  Score=204.88  Aligned_cols=160  Identities=29%  Similarity=0.475  Sum_probs=140.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      ++||+|+|++|+|||||+++|..+.+...+.|+.+..+. ..+.+++..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            479999999999999999999999998888888876554 4567788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcC-CeEEEEcCC
Q 026548          108 YDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQG-LFFSEASAL  173 (237)
Q Consensus       108 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  173 (237)
                      ||++++.+++.+. .|+..+.... .++|++||+||+|+...            +.+..+++.++++..+ +.|++|||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999996 5888887654 57999999999998543            4567788888998887 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 026548          174 NGDNVDTAFFRLLQEI  189 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i  189 (237)
                      +|.|++++|+.+++..
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999988753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=4e-31  Score=201.74  Aligned_cols=162  Identities=38%  Similarity=0.688  Sum_probs=144.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      ||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988888999888888888888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcC--CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRA--VSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ++++++++.+..|+..+..... ...|+++|+||.|+.....  ...++...++.+++.+++++||++|.|++++|+.|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999998765432 4578999999999865433  345667788888899999999999999999999999


Q ss_pred             HHHHH
Q 026548          187 QEIYG  191 (237)
Q Consensus       187 ~~i~~  191 (237)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-33  Score=202.91  Aligned_cols=174  Identities=40%  Similarity=0.695  Sum_probs=160.7

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC---------CEEEEEEEEeCCCcchhch
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN---------GKIIKAQIWDTAGQERYRA   92 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~   92 (237)
                      ...+++.+|.+.+|+.|+|||||+.++.+++|.....+++++++..+.+.++         +..+.++||||+|+++|++
T Consensus         3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS   82 (219)
T KOG0081|consen    3 DGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS   82 (219)
T ss_pred             CccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence            3467788999999999999999999999999999999999999998887773         3457899999999999999


Q ss_pred             hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEc
Q 026548           93 VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus        93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  171 (237)
                      +...|++.+-+++++||+++.++|-+++.|+.++..+.- .+..+|+++||+|+.+.+.++.+++.+++.++++|||++|
T Consensus        83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS  162 (219)
T KOG0081|consen   83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS  162 (219)
T ss_pred             HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence            999999999999999999999999999999999887665 5667999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhc
Q 026548          172 ALNGDNVDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       172 a~~~~gi~~~~~~l~~~i~~~~~~  195 (237)
                      |-+|.+|+++.+.|...+++++..
T Consensus       163 A~tg~Nv~kave~LldlvM~Rie~  186 (219)
T KOG0081|consen  163 ACTGTNVEKAVELLLDLVMKRIEQ  186 (219)
T ss_pred             cccCcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988863

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=2.9e-31  Score=201.23  Aligned_cols=161  Identities=33%  Similarity=0.543  Sum_probs=142.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999888777777776544 456777888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      |+++..+++.+..|+..+..... .+.|++||+||+|+........++..++++.++++++++||++|.|++++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999999876543 67999999999999876667777788888889999999999999999999999987


Q ss_pred             HHH
Q 026548          188 EIY  190 (237)
Q Consensus       188 ~i~  190 (237)
                      .+.
T Consensus       161 ~l~  163 (164)
T cd04175         161 QIN  163 (164)
T ss_pred             Hhh
Confidence            653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=3.6e-31  Score=204.99  Aligned_cols=166  Identities=30%  Similarity=0.474  Sum_probs=141.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      +||+|+|++|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999887777777666543 34554 6778899999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----cCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHH
Q 026548          108 YDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM----RAVSAEDAVEFAEDQGL-FFSEASALNGDNVDTA  181 (237)
Q Consensus       108 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~  181 (237)
                      ||++++.+++.+. .|+..+.... .++|++||+||.|+...    +.+..+++.+++...++ ++++|||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999985 5887776544 57999999999998653    24567888899999998 8999999999999999


Q ss_pred             HHHHHHHHHHhhhcc
Q 026548          182 FFRLLQEIYGAVSKK  196 (237)
Q Consensus       182 ~~~l~~~i~~~~~~~  196 (237)
                      |+.+++.+.....+.
T Consensus       159 f~~l~~~~~~~~~~~  173 (187)
T cd04132         159 FDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999887665543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=2.9e-31  Score=200.55  Aligned_cols=159  Identities=36%  Similarity=0.628  Sum_probs=144.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC--CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +||+++|++|+|||||+++|.++.+...+.++.+.++....+.++  +..+.+.+|||||++.+..++..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            489999999999999999999999888888888888877777776  777899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |||++++++++.+..|+..+.... .++|+++|+||+|+.....+..+++.++++..+++++++|++++.|++++|.+|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999987655 5799999999999977777778889999999999999999999999999999887


Q ss_pred             HH
Q 026548          187 QE  188 (237)
Q Consensus       187 ~~  188 (237)
                      ..
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            54

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=3.6e-31  Score=209.74  Aligned_cols=164  Identities=32%  Similarity=0.541  Sum_probs=146.7

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...+||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            56799999999999999999999999998888899988888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|||++++.++..+..|+..+.... .++|++||+||+|+.. +.+..+.. +++...++.|++|||++|.|++++|.+|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999988765 5799999999999854 33344444 7778888999999999999999999999


Q ss_pred             HHHHHHh
Q 026548          186 LQEIYGA  192 (237)
Q Consensus       186 ~~~i~~~  192 (237)
                      ++.+++.
T Consensus       168 ~~~~~~~  174 (219)
T PLN03071        168 ARKLAGD  174 (219)
T ss_pred             HHHHHcC
Confidence            9988654

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.6e-30  Score=205.16  Aligned_cols=167  Identities=41%  Similarity=0.706  Sum_probs=144.9

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      ....+||+|+|++|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~   89 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI   89 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            345689999999999999999999998764 4567777778777888888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHH-HHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          105 VVVYDITKRQSFDHVAR-WVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~-~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      |+|||++++++++.+.. |...+..... .+.|++||+||+|+.....+..++...++...++.|+++||+++.|++++|
T Consensus        90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~  169 (211)
T PLN03118         90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF  169 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999875 5555544332 568999999999998766777788888899999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 026548          183 FRLLQEIYGA  192 (237)
Q Consensus       183 ~~l~~~i~~~  192 (237)
                      ++|.+.+.+.
T Consensus       170 ~~l~~~~~~~  179 (211)
T PLN03118        170 EELALKIMEV  179 (211)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=8e-31  Score=199.90  Aligned_cols=162  Identities=35%  Similarity=0.658  Sum_probs=145.2

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            45799999999999999999999999988877788888887788888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVDT  180 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~  180 (237)
                      +|||++++.+++.+..|+..+.....    .++|++||+||.|+. .+....+++.+++...+. +++++||++|.|+.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            99999999999999999988766542    468999999999986 456678889999998884 799999999999999


Q ss_pred             HHHHHHHH
Q 026548          181 AFFRLLQE  188 (237)
Q Consensus       181 ~~~~l~~~  188 (237)
                      +|+++++.
T Consensus       162 ~~~~~~~~  169 (170)
T cd04116         162 AFEEAVRR  169 (170)
T ss_pred             HHHHHHhh
Confidence            99998865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=5.4e-31  Score=199.45  Aligned_cols=160  Identities=29%  Similarity=0.511  Sum_probs=141.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|.+|+|||||++++..+.+...+.++.+ ++....+.+++..+.+.||||||++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            6899999999999999999999998877767664 455667778888888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      |++++.+++++..|+..+..... .++|++||+||+|+.....+..++...++...+++++++||+++.|++++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999998877643 67999999999999766666677788888888899999999999999999999886


Q ss_pred             HH
Q 026548          188 EI  189 (237)
Q Consensus       188 ~i  189 (237)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            54

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=7.5e-31  Score=199.50  Aligned_cols=160  Identities=33%  Similarity=0.608  Sum_probs=141.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999998888778888888887777777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      |++++.++..+..|+..+..... ++|+++|+||+|+.. .... ....+++...++.++++||++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999988764 899999999999863 2333 34556777778899999999999999999999988


Q ss_pred             HHH
Q 026548          189 IYG  191 (237)
Q Consensus       189 i~~  191 (237)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1e-30  Score=199.54  Aligned_cols=162  Identities=41%  Similarity=0.717  Sum_probs=146.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-hhhHhhhcCCcEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-AVTSAYYRGALGAVV  106 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~il  106 (237)
                      .+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5799999999999999999999999887788888888888888889988999999999999887 578888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCC---CCCHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN---GDNVDTAF  182 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~~  182 (237)
                      |||++++.++..+..|+..+..... .++|+++|+||+|+...+++..++..+++...+++|+++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            9999999999999999998877643 6799999999999987778888888899999999999999999   89999999


Q ss_pred             HHHHHHH
Q 026548          183 FRLLQEI  189 (237)
Q Consensus       183 ~~l~~~i  189 (237)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9988765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=8.4e-31  Score=198.53  Aligned_cols=161  Identities=39%  Similarity=0.613  Sum_probs=141.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|++|+|||||+++|.+..+...+.++.. +.....+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999988777766665 334456677888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+...+....+.+.+++...+++++++||++|.|++++|++|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888776543 57899999999999776667778888899989999999999999999999999988


Q ss_pred             HHH
Q 026548          188 EIY  190 (237)
Q Consensus       188 ~i~  190 (237)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1.1e-30  Score=197.81  Aligned_cols=161  Identities=35%  Similarity=0.541  Sum_probs=141.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+++|++|+|||||++++.+..+...+.++.+.. ......+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            4799999999999999999999988776666666543 345567788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ||+++..+++.+..|+..+..... .++|++|++||+|+...+....++..+++...+++++++||++|.|++++|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            999999999999999998877543 5799999999999977666777788888888899999999999999999999998


Q ss_pred             HHH
Q 026548          187 QEI  189 (237)
Q Consensus       187 ~~i  189 (237)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.2e-30  Score=196.93  Aligned_cols=160  Identities=41%  Similarity=0.729  Sum_probs=146.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      .||+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+++.+|||||++.+..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            38999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      |++++.+++.+..|+..+......+.|+++++||+|+........++...++...+++++++||+++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999876654579999999999997666777888888888889999999999999999999998875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04124 RabL2 RabL2 subfamily

Probab=99.98  E-value=1.6e-30  Score=196.73  Aligned_cols=160  Identities=32%  Similarity=0.562  Sum_probs=140.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|.+|+|||||+++|....+.+.+.++.+.+.....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988877777777777777778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      |++++.+++.+..|+..+.... .++|++||+||+|+...   ..++..+++...+++++++||++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999987654 47999999999998532   2344566777788999999999999999999999988


Q ss_pred             HHHh
Q 026548          189 IYGA  192 (237)
Q Consensus       189 i~~~  192 (237)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            8764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.98  E-value=2.7e-30  Score=195.47  Aligned_cols=161  Identities=50%  Similarity=0.848  Sum_probs=147.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|++|+|||||+++|.++.+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++++|++|+||
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   81 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence            79999999999999999999999988777788887787888888998899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      |++++.++.....|+..+.......+|++|++||+|+........++...++...+++++++||++|.|+.++|++|++.
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd01860          82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKK  161 (163)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999887765779999999999987666777888888899989999999999999999999999887


Q ss_pred             H
Q 026548          189 I  189 (237)
Q Consensus       189 i  189 (237)
                      +
T Consensus       162 l  162 (163)
T cd01860         162 L  162 (163)
T ss_pred             h
Confidence            5

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.98  E-value=2e-30  Score=195.62  Aligned_cols=159  Identities=34%  Similarity=0.606  Sum_probs=139.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            6899999999999999999999998777777766443 456677888888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      |+++..+++.+..|+..+..... .++|++||+||+|+.. .....+++.+++...+++++++||++|.|++++|+++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999998877653 5799999999999865 345567788888888999999999999999999999987


Q ss_pred             HH
Q 026548          188 EI  189 (237)
Q Consensus       188 ~i  189 (237)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.98  E-value=1.3e-30  Score=199.67  Aligned_cols=158  Identities=31%  Similarity=0.503  Sum_probs=138.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|++|+|||||+.++..+.+...+.++... .....+.+++..+.+.||||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            68999999999999999999999998888787753 34456677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 026548          109 DITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEASALN  174 (237)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  174 (237)
                      |++++++++.+. .|+..+.... .++|++||+||+|+.+.            +.+..+++.+++++++. .+++|||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999985 6888776654 57999999999998542            24778889999999984 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 026548          175 GDNVDTAFFRLLQE  188 (237)
Q Consensus       175 ~~gi~~~~~~l~~~  188 (237)
                      |.|++++|+.+++.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999988764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04140 ARHI_like ARHI subfamily

Probab=99.98  E-value=2.3e-30  Score=196.59  Aligned_cols=158  Identities=30%  Similarity=0.424  Sum_probs=138.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+++++++.+...+.++.+..+ ...+..+...+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            6899999999999999999999998777777765443 445566777789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      |++++.+++.+..|+..+.....   .++|++||+||+|+...+.+..+++..++..+++.+++|||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999888776532   579999999999997766777778888888889999999999999999999998


Q ss_pred             HH
Q 026548          186 LQ  187 (237)
Q Consensus       186 ~~  187 (237)
                      +.
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            74

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04134 Rho3 Rho3 subfamily

Probab=99.97  E-value=2.5e-30  Score=200.67  Aligned_cols=161  Identities=29%  Similarity=0.499  Sum_probs=139.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      ||+|+|++|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.+..++..+++.+|++|+|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            8999999999999999999999998877788766543 456678888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------CCCHHHHHHHHHHcC-CeEEEEcCCCC
Q 026548          110 ITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMR------------AVSAEDAVEFAEDQG-LFFSEASALNG  175 (237)
Q Consensus       110 ~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~  175 (237)
                      ++++.+++.+. .|+..+.... .+.|++||+||+|+....            .+..++..+++...+ ++|++|||++|
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            99999999986 5888887654 579999999999986543            245667788888877 68999999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 026548          176 DNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       176 ~gi~~~~~~l~~~i~~~  192 (237)
                      .|++++|.+|++.+...
T Consensus       160 ~~v~e~f~~l~~~~~~~  176 (189)
T cd04134         160 RGVNEAFTEAARVALNV  176 (189)
T ss_pred             CCHHHHHHHHHHHHhcc
Confidence            99999999999888643

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04142 RRP22 RRP22 subfamily

Probab=99.97  E-value=2.9e-30  Score=201.40  Aligned_cols=165  Identities=22%  Similarity=0.262  Sum_probs=138.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hhHhhhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VTSAYYRG  100 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~  100 (237)
                      +||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.||||||...+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999888888887676666777888888999999999665422        12345789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-HcCCeEEEEcCCCCC
Q 026548          101 ALGAVVVYDITKRQSFDHVARWVEELRAHA---DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-DQGLFFSEASALNGD  176 (237)
Q Consensus       101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  176 (237)
                      +|++|+|||++++.+++.+..|+..+....   ..++|++||+||+|+...+....++...++. .++++|++|||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999999887654   3679999999999997666666666766654 568999999999999


Q ss_pred             CHHHHHHHHHHHHHHhh
Q 026548          177 NVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       177 gi~~~~~~l~~~i~~~~  193 (237)
                      |++++|+.+++.++.+-
T Consensus       161 ~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         161 HILLLFKELLISATTRG  177 (198)
T ss_pred             CHHHHHHHHHHHhhccC
Confidence            99999999998887443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01862 Rab7 Rab7 subfamily

Probab=99.97  E-value=1.3e-29  Score=193.25  Aligned_cols=165  Identities=36%  Similarity=0.675  Sum_probs=146.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888788888888888888988899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~  183 (237)
                      |++++.+++.+..|...+.....    .++|+++|+||+|+........++...+++..+ .+++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999999889887655442    379999999999997555666778888888887 7899999999999999999


Q ss_pred             HHHHHHHHhh
Q 026548          184 RLLQEIYGAV  193 (237)
Q Consensus       184 ~l~~~i~~~~  193 (237)
                      ++.+.+++..
T Consensus       161 ~i~~~~~~~~  170 (172)
T cd01862         161 TIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcc
Confidence            9999888764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.97  E-value=7.8e-30  Score=193.21  Aligned_cols=160  Identities=32%  Similarity=0.565  Sum_probs=140.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC--CCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN--EFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      +||+++|++|||||||+++|...  .+...+.++.+.++....+.++ +..+.+.+|||||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  5667777888888777777664 56689999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|||++++.++..+..|+..+.... .++|+++|+||+|+....++.......+....+++++++||+++.|++++|+.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999887765 579999999999997766677767777778888999999999999999999999


Q ss_pred             HHHH
Q 026548          186 LQEI  189 (237)
Q Consensus       186 ~~~i  189 (237)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.97  E-value=6.9e-30  Score=199.20  Aligned_cols=156  Identities=31%  Similarity=0.572  Sum_probs=140.1

Q ss_pred             EcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh
Q 026548           34 IGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR  113 (237)
Q Consensus        34 ~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~  113 (237)
                      +|.+|+|||||+++|+.+.+...+.++.+.++....+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999988878889988888888888888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548          114 QSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       114 ~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  192 (237)
                      .+++.+..|+..+.... .++|++||+||+|+.. +.+..+ ...++...++.|++|||++|.||+++|.+|++.+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999998765 5899999999999854 334443 3467888899999999999999999999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04123 Rab21 Rab21 subfamily

Probab=99.97  E-value=1.7e-29  Score=190.54  Aligned_cols=161  Identities=42%  Similarity=0.718  Sum_probs=144.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+++|+++.+...+.++.+..+....+.+.+..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887777677766777777777888888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      |++++.++..+..|+..+......++|+++++||+|+........++..+++...+++++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887765679999999999998766777778888888889999999999999999999999876


Q ss_pred             H
Q 026548          189 I  189 (237)
Q Consensus       189 i  189 (237)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.97  E-value=8.1e-30  Score=195.01  Aligned_cols=159  Identities=30%  Similarity=0.514  Sum_probs=138.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEEC
Q 026548           31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDI  110 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~  110 (237)
                      |+|+|++|+|||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            68999999999999999999998877777765444 35567788888999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------CCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 026548          111 TKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMR------------AVSAEDAVEFAEDQGL-FFSEASALNGD  176 (237)
Q Consensus       111 ~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  176 (237)
                      +++++++.+. .|+..+.... .++|++||+||+|+....            .+..+++.++++..+. .+++|||+++.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999985 5888887655 589999999999986522            3677788889999986 89999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 026548          177 NVDTAFFRLLQEIYG  191 (237)
Q Consensus       177 gi~~~~~~l~~~i~~  191 (237)
                      |++++|+.+++.++.
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999987753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=1.9e-29  Score=190.50  Aligned_cols=159  Identities=45%  Similarity=0.815  Sum_probs=142.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777788888887777778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      |++++.+++.+..|++.+..... .++|+++|+||+|+.. .....++..+++...+++++++|+++|.|++++|+.+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999998877754 6899999999999873 355677888899999999999999999999999998876


Q ss_pred             H
Q 026548          188 E  188 (237)
Q Consensus       188 ~  188 (237)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=2.3e-29  Score=191.67  Aligned_cols=162  Identities=34%  Similarity=0.557  Sum_probs=142.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|.+|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            589999999999999999999999877777776644 3566777888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |++++.+++.+..|...+..... .+.|+++++||.|+...+....++..++++.++ ++++++||+++.|++++|.+++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998876443 579999999999997767777778888888888 7899999999999999999999


Q ss_pred             HHHHH
Q 026548          187 QEIYG  191 (237)
Q Consensus       187 ~~i~~  191 (237)
                      ..++-
T Consensus       161 ~~~~~  165 (168)
T cd04177         161 RQIIC  165 (168)
T ss_pred             HHHhh
Confidence            87653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=1.1e-29  Score=197.60  Aligned_cols=158  Identities=23%  Similarity=0.380  Sum_probs=129.6

Q ss_pred             eeeEEEEcCCCCcHHHHHH-HHhcCC-----CcCCCCCCcce-eEEEEE--------EEECCEEEEEEEEeCCCcchhch
Q 026548           28 VFKVVVIGDSAVGKSQILS-RFTKNE-----FFFDSKSTIGV-EFQTRT--------VTINGKIIKAQIWDTAGQERYRA   92 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~   92 (237)
                      .+||+++|+.|+|||||+. ++.++.     +...+.||++. +.+...        ..+++..+.+.||||+|++..  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            4799999999999999995 665543     34456677642 222222        256888999999999998753  


Q ss_pred             hhHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC-------------------CcCCC
Q 026548           93 VTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD-------------------MRAVS  152 (237)
Q Consensus        93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~-------------------~~~~~  152 (237)
                      +...+++++|++|+|||++++.+++.+. .|+..+.... .++|++||+||+|+..                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4556889999999999999999999996 5988887765 4789999999999863                   36788


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          153 AEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      .+++++++++++++|++|||++|.||+++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999998764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=1.1e-29  Score=192.74  Aligned_cols=160  Identities=37%  Similarity=0.572  Sum_probs=137.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch-hchhhHhhhcCCcEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER-YRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~ilv~  108 (237)
                      ||+|+|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||++. +......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999998887666666654333 45667788888999999999885 3455777899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC-CCHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHA--DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG-DNVDTAFFRL  185 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~~~~~l  185 (237)
                      |++++.+++.+..|+..+....  ..++|+++|+||+|+...+.+..+++.++++..+++|+++||+++ .|++++|+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999998887754  357999999999999776777888888999999999999999999 5999999999


Q ss_pred             HHHHH
Q 026548          186 LQEIY  190 (237)
Q Consensus       186 ~~~i~  190 (237)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98765

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=1.2e-29  Score=193.50  Aligned_cols=163  Identities=23%  Similarity=0.247  Sum_probs=141.1

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      .+.+||+++|++|+|||||+++|+++.+. ..+.+|.+..+....+.+++..+.+.+||++|.+.+..++..+++.+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35899999999999999999999999988 77888888887777788888888899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAFF  183 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~  183 (237)
                      |+|||++++.+++.+..|+..+...  .++|+++|+||+|+.+.......+..++++.+++. ++++||+++.|++++|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            9999999999999998888865432  37999999999998655444444566778888874 79999999999999999


Q ss_pred             HHHHHHH
Q 026548          184 RLLQEIY  190 (237)
Q Consensus       184 ~l~~~i~  190 (237)
                      .+++.++
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=2.8e-29  Score=201.84  Aligned_cols=160  Identities=27%  Similarity=0.433  Sum_probs=139.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|++|+|||||+++|+.+.+...+.++.+ ++..+.+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999998877777765 556677888898899999999999999988888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-cCCeEEEEcCCCCCCH
Q 026548          109 DITKRQSFDHVARWVEELRAH---------ADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-QGLFFSEASALNGDNV  178 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi  178 (237)
                      |+++.++|+.+..|+..+...         ...++|++||+||+|+...+++..+++.+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999999988654         124799999999999976667778888877664 4678999999999999


Q ss_pred             HHHHHHHHHHH
Q 026548          179 DTAFFRLLQEI  189 (237)
Q Consensus       179 ~~~~~~l~~~i  189 (237)
                      +++|++|+..+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999998854

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=7.6e-29  Score=188.68  Aligned_cols=164  Identities=43%  Similarity=0.763  Sum_probs=146.2

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+++|++|+|||||+++|..+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            34689999999999999999999988887777788887888888888888889999999999999998899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|||++++.+++.+..|+..+......++|+++|+||+|+...+++..+....+.+....+++++|+++|.|++++|++|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  164 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL  164 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999998877665679999999999998767777777778887778889999999999999999999


Q ss_pred             HHHH
Q 026548          186 LQEI  189 (237)
Q Consensus       186 ~~~i  189 (237)
                      .+.+
T Consensus       165 ~~~~  168 (169)
T cd04114         165 ACRL  168 (169)
T ss_pred             HHHh
Confidence            8764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=2.8e-29  Score=189.24  Aligned_cols=153  Identities=22%  Similarity=0.367  Sum_probs=130.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|+.|+|||||++++..+.+...+.++ ...+ ...+.+++..+.+.+|||+|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            48999999999999999999998887665444 3333 46678889888999999999975     24678899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCcCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLV--DMRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |++++.+|+.+..|+..+..... .++|+++|+||.|+.  ..+.+..+++.++++.. ++.|++|||++|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999887754 578999999999984  35677888888898876 489999999999999999999


Q ss_pred             HHHH
Q 026548          185 LLQE  188 (237)
Q Consensus       185 l~~~  188 (237)
                      +++.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd00154 Rab Rab family

Probab=99.97  E-value=4.8e-29  Score=186.89  Aligned_cols=158  Identities=54%  Similarity=0.922  Sum_probs=145.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |+++++++..+..|+..+........|++|++||+|+........++..+++...+++++++|++++.|++++|++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999998887656799999999999975566778889999999899999999999999999999876

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=4.8e-29  Score=197.86  Aligned_cols=165  Identities=30%  Similarity=0.356  Sum_probs=140.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc-CCcEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR-GALGAVV  106 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~~il  106 (237)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+|||+|++.  .....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            48999999999999999999988876 55666665567777888888889999999999982  23345666 9999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      |||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..++..+++...+++++++||+++.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999998877543 579999999999997777777888888888889999999999999999999999


Q ss_pred             HHHHHHhhhc
Q 026548          186 LQEIYGAVSK  195 (237)
Q Consensus       186 ~~~i~~~~~~  195 (237)
                      ++.+......
T Consensus       159 ~~~~~~~~~~  168 (221)
T cd04148         159 VRQIRLRRDS  168 (221)
T ss_pred             HHHHHhhhcc
Confidence            9988755544

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=6.8e-29  Score=189.95  Aligned_cols=157  Identities=29%  Similarity=0.503  Sum_probs=136.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||++++..+.+...+.++. .+.....+.+++..+.+.+|||||++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988877776665 4455566778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC------------CcCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 026548          109 DITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGL-FFSEASALN  174 (237)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  174 (237)
                      |++++.+++.+. .|+..+.... .++|+++++||.|+..            .+.+..+++..+++..+. .+++|||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999984 6888877543 4699999999999853            356678889999999987 799999999


Q ss_pred             CCCHHHHHHHHHH
Q 026548          175 GDNVDTAFFRLLQ  187 (237)
Q Consensus       175 ~~gi~~~~~~l~~  187 (237)
                      |.|++++|+.++.
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999987764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=2.7e-31  Score=185.82  Aligned_cols=161  Identities=41%  Similarity=0.729  Sum_probs=150.3

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEEC
Q 026548           32 VVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDI  110 (237)
Q Consensus        32 ~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~  110 (237)
                      .++|++++|||.|+-++.++.|.. ...+++++++..+.+.+++..+++++|||+|+++|++....+++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            378999999999999988888765 4568999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          111 TKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       111 ~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      .+..+|++.+.|+.++.++....+.+.+++||+|+..++.+..++...+++.+++|++++||++|.+++-+|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999998888999999999999888889999999999999999999999999999999998888776


Q ss_pred             Hh
Q 026548          191 GA  192 (237)
Q Consensus       191 ~~  192 (237)
                      +.
T Consensus       161 k~  162 (192)
T KOG0083|consen  161 KL  162 (192)
T ss_pred             Hh
Confidence            54

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=6.3e-29  Score=190.06  Aligned_cols=159  Identities=30%  Similarity=0.473  Sum_probs=136.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+++|..+.+...+.++... .....+.+++..+.+.+|||||++.+...+..+++.+|++|+||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            58999999999999999999999987777666543 33446777888888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 026548          109 DITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEASALN  174 (237)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  174 (237)
                      |++++.+++.+. .|+..+... ..+.|++||+||+|+.+.            ..+..+++..+++..+. ++++|||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999885 687777655 468999999999998542            25667788899999986 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 026548          175 GDNVDTAFFRLLQEI  189 (237)
Q Consensus       175 ~~gi~~~~~~l~~~i  189 (237)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=2e-28  Score=185.10  Aligned_cols=162  Identities=36%  Similarity=0.587  Sum_probs=141.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+++|....+...+.++.... ..+....++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            489999999999999999999998877766665543 3456677888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      |++++.++..+..|+..+..... .++|+++|+||+|+........+....++..++++++++||+++.|++++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999998887643 57999999999999764555667778888888999999999999999999999988


Q ss_pred             HHHH
Q 026548          188 EIYG  191 (237)
Q Consensus       188 ~i~~  191 (237)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04139         160 EIRQ  163 (164)
T ss_pred             HHHh
Confidence            7753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.96  E-value=3.5e-28  Score=182.96  Aligned_cols=158  Identities=38%  Similarity=0.580  Sum_probs=140.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      ||+|+|++|+|||||+++|++..+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777666665 5556667778777899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      ++++++++.+..|+..+..... ...|+++++||+|+........+.+..++...+++++++|++++.|++++|++|++.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999999887765 689999999999998766777888999999989999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.96  E-value=6.8e-28  Score=186.09  Aligned_cols=167  Identities=23%  Similarity=0.376  Sum_probs=133.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE-CCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      .+||+++|++|||||||++++....+... .++.+.+.....+.+ ++..+.+.+|||||++.+..++..+++++|++|+
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            57999999999999999999998887644 466666655555544 3456789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH------cCCeEEEEcCCCCCCHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAED------QGLFFSEASALNGDNVD  179 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~  179 (237)
                      |||++++.+++.+..|+..+..... .+.|++||+||+|+..  ....++...+...      .+++++++||+++.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            9999999999888888877665432 5799999999999864  3344444444321      12468899999999999


Q ss_pred             HHHHHHHHHHHHhhhccc
Q 026548          180 TAFFRLLQEIYGAVSKKE  197 (237)
Q Consensus       180 ~~~~~l~~~i~~~~~~~~  197 (237)
                      ++|++|.+.+.++.+..+
T Consensus       160 ~l~~~l~~~l~~~~~~~~  177 (183)
T cd04152         160 EGLEKLYEMILKRRKMLR  177 (183)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999999987776554

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.96  E-value=1.7e-27  Score=183.17  Aligned_cols=164  Identities=35%  Similarity=0.521  Sum_probs=141.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      .||+|+|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+...+..++..+|+++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999887766666654443 455667777788999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      |+++..+++.+..|+..+..... .+.|+++++||+|+...+....++...++..++.+++++||+++.|+.++|+++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999888776543 57899999999999766666777778888888899999999999999999999998


Q ss_pred             HHHHhh
Q 026548          188 EIYGAV  193 (237)
Q Consensus       188 ~i~~~~  193 (237)
                      .+....
T Consensus       161 ~~~~~~  166 (180)
T cd04137         161 EIEKVE  166 (180)
T ss_pred             HHHHhc
Confidence            876554

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.96  E-value=2.4e-27  Score=181.50  Aligned_cols=159  Identities=28%  Similarity=0.484  Sum_probs=134.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      .||+|+|++|+|||||+++|..+.+...+.++....+. ..+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            48999999999999999999999988777777765543 45677888889999999999999988888899999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 026548          109 DITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEASALN  174 (237)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  174 (237)
                      |+++.++++.+. .|+..+.... .++|+++|+||+|+...            ..+..++.++++...+. .+++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998885 5877776544 57999999999998542            23445677888888775 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 026548          175 GDNVDTAFFRLLQEI  189 (237)
Q Consensus       175 ~~gi~~~~~~l~~~i  189 (237)
                      |.|++++|.+|++.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=1.1e-27  Score=185.56  Aligned_cols=166  Identities=36%  Similarity=0.532  Sum_probs=153.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      ..||+++|.+|+|||+|+.++....|...|.|++. +.+.+.+.+++..+.+.|+||+|++.+..+...+++..|++++|
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            57999999999999999999999999999999987 66778889999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |++++..||+.+..++..+.+... ..+|+++|+||+|+...+.+..++++.++..++++|+|+||+.+.+++++|..|+
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~  161 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELV  161 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence            999999999999999999855444 6789999999999998899999999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 026548          187 QEIYGAVS  194 (237)
Q Consensus       187 ~~i~~~~~  194 (237)
                      +.+.....
T Consensus       162 r~~~~~~~  169 (196)
T KOG0395|consen  162 REIRLPRE  169 (196)
T ss_pred             HHHHhhhc
Confidence            98876443

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=2e-27  Score=185.66  Aligned_cols=160  Identities=28%  Similarity=0.449  Sum_probs=135.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      ||+++|++|+|||||+++|+...+...+.++.. ......+.+.+..+.+.|||+||+..+..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988776666654 4455667778888899999999999999988899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CcCCCHHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVD-MRAVSAEDAVEFAE-DQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ++++.+++.+..|+..+..... .++|++||+||+|+.. ...+..+...+... ..+.+++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988877654 5799999999999865 34455555554443 4567899999999999999999999


Q ss_pred             HHHH
Q 026548          187 QEIY  190 (237)
Q Consensus       187 ~~i~  190 (237)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04129 Rho2 Rho2 subfamily

Probab=99.96  E-value=2.5e-27  Score=183.53  Aligned_cols=164  Identities=30%  Similarity=0.513  Sum_probs=137.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      .||+|+|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......+++.+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            4899999999999999999998887766666654443 345667888888999999999988877777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC----------CcCCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 026548          109 DITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD----------MRAVSAEDAVEFAEDQGL-FFSEASALNGD  176 (237)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  176 (237)
                      |+++.++++.+. .|+..+.... .++|++||+||+|+..          .+.+..++...+++..+. +|++|||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999986 6888887655 4699999999999853          234556778888999985 79999999999


Q ss_pred             CHHHHHHHHHHHHHHhhh
Q 026548          177 NVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       177 gi~~~~~~l~~~i~~~~~  194 (237)
                      |++++|+++.+.++..++
T Consensus       160 ~v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         160 GVDDVFEAATRAALLVRK  177 (187)
T ss_pred             CHHHHHHHHHHHHhcccC
Confidence            999999999988765554

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04149 Arf6 Arf6 subfamily

Probab=99.96  E-value=7e-28  Score=183.49  Aligned_cols=153  Identities=24%  Similarity=0.409  Sum_probs=122.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .++|+++|++|+|||||+++|..+.+.. +.++.+.++.  .+...  .+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            5799999999999999999998877643 4566665543  33333  47899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-----QGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~~  181 (237)
                      ||++++.+++.+..|+..+.... ..++|++||+||+|+.+  ....+++.++...     ..+.++++||++|.|++++
T Consensus        84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~  161 (168)
T cd04149          84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  161 (168)
T ss_pred             EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence            99999999998888877765432 25689999999999865  3455666665431     2346899999999999999


Q ss_pred             HHHHHH
Q 026548          182 FFRLLQ  187 (237)
Q Consensus       182 ~~~l~~  187 (237)
                      |++|.+
T Consensus       162 ~~~l~~  167 (168)
T cd04149         162 LTWLSS  167 (168)
T ss_pred             HHHHhc
Confidence            999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=1.8e-27  Score=181.43  Aligned_cols=156  Identities=24%  Similarity=0.413  Sum_probs=126.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      ||+++|.+|+|||||+++|.+..+.. +.+|.+..+.  .+...  .+.+.+|||||++.+...+..+++.+|++++|||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999987643 5566665543  33344  3788999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC------CeEEEEcCCCCCCHHHHH
Q 026548          110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG------LFFSEASALNGDNVDTAF  182 (237)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~  182 (237)
                      ++++.+++.+..|+..+..... .+.|++|++||.|+..  ....+++.+++...+      +.+++|||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            9999999999999888765432 4689999999999864  456666766654222      258899999999999999


Q ss_pred             HHHHHHHHHh
Q 026548          183 FRLLQEIYGA  192 (237)
Q Consensus       183 ~~l~~~i~~~  192 (237)
                      ++|.+.+.+.
T Consensus       154 ~~l~~~~~~~  163 (169)
T cd04158         154 DWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHhhc
Confidence            9998876553

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=6.6e-27  Score=185.06  Aligned_cols=167  Identities=29%  Similarity=0.503  Sum_probs=145.3

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ......+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            34455689999999999999999999888888888899998888888888888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      ++++|||+++..++..+..|+..+.... .++|+++++||+|+... .... ....++...++.++++|+++|.|++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999987665 57999999999998542 3333 3346777888899999999999999999


Q ss_pred             HHHHHHHHHh
Q 026548          183 FRLLQEIYGA  192 (237)
Q Consensus       183 ~~l~~~i~~~  192 (237)
                      .+|++.++..
T Consensus       161 ~~ia~~l~~~  170 (215)
T PTZ00132        161 LWLARRLTND  170 (215)
T ss_pred             HHHHHHHhhc
Confidence            9999988754

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=2.6e-27  Score=182.42  Aligned_cols=159  Identities=20%  Similarity=0.354  Sum_probs=123.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..+||+++|.+|||||||+++|..+.+. .+.++.+.++.  .+...  .+.+.+||+||++.+..++..+++++|++|+
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            3579999999999999999999987765 35577665543  33444  3789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-----LFFSEASALNGDNVDT  180 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  180 (237)
                      |||++++++++....|+..+.... ..++|++|++||.|+...  ...++..+......     +.+++|||++|.|+.+
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e  168 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence            999999999988887777664322 257999999999998653  33344333322111     2466899999999999


Q ss_pred             HHHHHHHHHHHh
Q 026548          181 AFFRLLQEIYGA  192 (237)
Q Consensus       181 ~~~~l~~~i~~~  192 (237)
                      +|++|.+.+..+
T Consensus       169 ~~~~l~~~~~~~  180 (181)
T PLN00223        169 GLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHhhc
Confidence            999999887653

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=8.8e-27  Score=177.46  Aligned_cols=157  Identities=32%  Similarity=0.566  Sum_probs=131.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+++|.+..+...+.++.. +.....+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999998666666654 334455677888889999999999998888888889999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------CCCHHHHHHHHHHcCC-eEEEEcCCCC
Q 026548          109 DITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDMR-----------AVSAEDAVEFAEDQGL-FFSEASALNG  175 (237)
Q Consensus       109 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  175 (237)
                      |++++.++... ..|+..+.... .+.|+++|+||+|+....           .+..++..+++...+. +++++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            99999988876 45777766654 479999999999986543           2356778888888887 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQ  187 (237)
Q Consensus       176 ~gi~~~~~~l~~  187 (237)
                      .|++++|+++++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=5.3e-28  Score=183.46  Aligned_cols=152  Identities=18%  Similarity=0.305  Sum_probs=123.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEEC
Q 026548           31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDI  110 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~  110 (237)
                      |+++|++|+|||||+++|.+..+...+.++.+...    ..+++..+.+.+||++|++.+..++..+++++|++|+|||+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            79999999999999999999888777777776543    22344457899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCH----HHHHHHHHHcCCeEEEEcCCC------CCCHHH
Q 026548          111 TKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSA----EDAVEFAEDQGLFFSEASALN------GDNVDT  180 (237)
Q Consensus       111 ~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~gi~~  180 (237)
                      +++.++.....|+..+.... .++|+++|+||.|+...+....    .....++.+.++.+++|||++      ++||.+
T Consensus        78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~  156 (164)
T cd04162          78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD  156 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence            99999999988888876543 5899999999999876442211    123445566678899988888      999999


Q ss_pred             HHHHHHH
Q 026548          181 AFFRLLQ  187 (237)
Q Consensus       181 ~~~~l~~  187 (237)
                      +|+.++.
T Consensus       157 ~~~~~~~  163 (164)
T cd04162         157 LLSQLIN  163 (164)
T ss_pred             HHHHHhc
Confidence            9988763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-29  Score=184.47  Aligned_cols=178  Identities=30%  Similarity=0.489  Sum_probs=167.1

Q ss_pred             hcccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHh
Q 026548           17 QENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSA   96 (237)
Q Consensus        17 ~~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   96 (237)
                      ...|.+.+.+..+|++|+|..++||||+|++++.+-|...+..+++.++....+.++++.+.+.+||++|+++|......
T Consensus         9 ~~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkA   88 (246)
T KOG4252|consen    9 GMAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKA   88 (246)
T ss_pred             cCCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHH
Confidence            34577788899999999999999999999999999999999999999999999999888899999999999999999999


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548           97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD  176 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  176 (237)
                      +++++.+.++||+-+|..+|+.+..|++.+.... ..+|.++|-||+|+.++..+..+++..+++++.+.++.+|++...
T Consensus        89 yyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~  167 (246)
T KOG4252|consen   89 YYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDF  167 (246)
T ss_pred             HhccccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhh
Confidence            9999999999999999999999999999998877 589999999999999988999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhc
Q 026548          177 NVDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       177 gi~~~~~~l~~~i~~~~~~  195 (237)
                      ++..+|.+|++++..+...
T Consensus       168 NV~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  168 NVMHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            9999999999998877654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.95  E-value=5.4e-27  Score=179.77  Aligned_cols=155  Identities=25%  Similarity=0.424  Sum_probs=121.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+++|.+|+|||||+++|..+.+. .+.+|.+.++.  .+...  .+.+.+||+||++.+..++..+++++|++|+|
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            589999999999999999999877764 35577665543  33334  37899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      ||++++.+++....|+..+.... ..++|++||+||.|+.+.  ...+++.+...     ...+.++++||++|.|++++
T Consensus        88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  165 (175)
T smart00177       88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG  165 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence            99999999999888887765432 256899999999998653  23333333221     12234778999999999999


Q ss_pred             HHHHHHHH
Q 026548          182 FFRLLQEI  189 (237)
Q Consensus       182 ~~~l~~~i  189 (237)
                      |++|.+.+
T Consensus       166 ~~~l~~~~  173 (175)
T smart00177      166 LTWLSNNL  173 (175)
T ss_pred             HHHHHHHh
Confidence            99998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.95  E-value=3.9e-27  Score=177.83  Aligned_cols=152  Identities=22%  Similarity=0.413  Sum_probs=118.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|.+|+|||||+++|..+.+. .+.++.+....  .+...  .+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999887775 35677665543  33333  477899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcCCCHHHH-HHHHH----HcCCeEEEEcCCCCCCHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAH-ADSSIRIILIGNKSDLVDMRAVSAEDA-VEFAE----DQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      |+++..+++....|+..+... .....|++|++||.|+...  ...++. ..+..    ...+.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999988877776433 2246899999999998642  223332 22211    123457899999999999999


Q ss_pred             HHHHH
Q 026548          183 FRLLQ  187 (237)
Q Consensus       183 ~~l~~  187 (237)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            98864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.95  E-value=7.2e-27  Score=180.15  Aligned_cols=159  Identities=22%  Similarity=0.378  Sum_probs=123.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+++|++|+|||||++++..+.+.. +.+|.+.++.  .+...  .+.+.+|||||++.+..++..+++.+|++|+|
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            5799999999999999999998877654 4567665543  33333  37899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      ||++++.++.....++..+.... ...+|++||+||.|+.+  ....+++.+...     ...+.++++||++|.|++++
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~  169 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG  169 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence            99999999998887777664321 24689999999999864  223333322211     11235678999999999999


Q ss_pred             HHHHHHHHHHhh
Q 026548          182 FFRLLQEIYGAV  193 (237)
Q Consensus       182 ~~~l~~~i~~~~  193 (237)
                      |++|.+.+.+.+
T Consensus       170 ~~~l~~~i~~~~  181 (182)
T PTZ00133        170 LDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHHhc
Confidence            999999887764

>cd01893 Miro1 Miro1 subfamily

Probab=99.95  E-value=1e-26  Score=176.74  Aligned_cols=160  Identities=26%  Similarity=0.360  Sum_probs=124.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+++|++|+|||||+++|.++.+...+..+ ... ......+++..+.+.+|||||.+.+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999999886554332 222 2233445667789999999999988888888889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC--HHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHH
Q 026548          109 DITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMRAVS--AEDAVEFAEDQG--LFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~  183 (237)
                      |++++.+++.+. .|+..+.... .++|+++|+||+|+.+.....  .+....++....  .++++|||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999985 6888777655 479999999999997644321  223333344433  3799999999999999999


Q ss_pred             HHHHHHHH
Q 026548          184 RLLQEIYG  191 (237)
Q Consensus       184 ~l~~~i~~  191 (237)
                      .+.+.+..
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04154 Arl2 Arl2 subfamily

Probab=99.95  E-value=1.1e-26  Score=177.61  Aligned_cols=154  Identities=24%  Similarity=0.393  Sum_probs=122.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..++|+++|++|+|||||+++|.+..+. .+.++.+.  ....+.+++  +.+.+||+||++.+..++..+++.+|++++
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            3579999999999999999999987543 44456553  334445554  678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~  180 (237)
                      |||++++.++.....|+..+.... ..++|++||+||+|+.+.  ...+++.++..     ..+++++++||++|.|+++
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  165 (173)
T cd04154          88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ  165 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence            999999999998888887765432 257999999999998653  24555555543     2356799999999999999


Q ss_pred             HHHHHHH
Q 026548          181 AFFRLLQ  187 (237)
Q Consensus       181 ~~~~l~~  187 (237)
                      +|++++.
T Consensus       166 l~~~l~~  172 (173)
T cd04154         166 GIDWLVD  172 (173)
T ss_pred             HHHHHhc
Confidence            9998864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.95  E-value=1.7e-26  Score=180.08  Aligned_cols=148  Identities=26%  Similarity=0.429  Sum_probs=126.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-----CEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-----GKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      +||+++|+.|+|||||+++|..+.+...+.+|++.++..+.+.++     +..+.+.||||+|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888898888877777663     567889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCcCCCHH----HHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHA-------------------DSSIRIILIGNKSDLVDMRAVSAE----DAVEFA  160 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~vvv~nK~D~~~~~~~~~~----~~~~~~  160 (237)
                      +|+|||++++.+++.+..|+..+....                   ..++|++||+||.|+.+.+.+..+    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999987632                   246999999999999765544444    345678


Q ss_pred             HHcCCeEEEEcCCCCC
Q 026548          161 EDQGLFFSEASALNGD  176 (237)
Q Consensus       161 ~~~~~~~~~~Sa~~~~  176 (237)
                      .+.+++.++.++.+..
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            8899998888776554

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.95  E-value=2e-27  Score=180.63  Aligned_cols=166  Identities=31%  Similarity=0.534  Sum_probs=149.5

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ..+|++|||+.++|||+|+-.+..+.|+..+.||+. +-+...+.++ |..+.+.||||+|++.|..++...+.++|.++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            468999999999999999999999999999999987 6667888885 99999999999999999998888899999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcC-CeEEEEc
Q 026548          106 VVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQG-LFFSEAS  171 (237)
Q Consensus       106 lv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  171 (237)
                      ++|++.++.+++++ .+|+.++..++ +++|+|+|++|.|+..+            ..+..+++.+.+++.| ..|+|||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            99999999999996 77999999988 79999999999999742            3567888999999999 5699999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhh
Q 026548          172 ALNGDNVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       172 a~~~~gi~~~~~~l~~~i~~~~~  194 (237)
                      |++..|+.++|+..++..+..-.
T Consensus       161 a~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhcccc
Confidence            99999999999999988766443

>cd04157 Arl6 Arl6 subfamily

Probab=99.94  E-value=6.3e-26  Score=171.25  Aligned_cols=152  Identities=23%  Similarity=0.359  Sum_probs=117.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC-cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF-FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +|+++|++|+|||||+++|.+..+ ...+.++.+....  .+...  .+.+.+|||||++.+..++..+++.+|++|+||
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998763 4455567664432  23333  467899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHA---DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~  180 (237)
                      |++++.++.....|+..+....   ..++|++||+||+|+.+..  ..++..+...     .....++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888887765532   2579999999999986532  2233322221     1224589999999999999


Q ss_pred             HHHHHHH
Q 026548          181 AFFRLLQ  187 (237)
Q Consensus       181 ~~~~l~~  187 (237)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9998864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.94  E-value=1.1e-25  Score=172.47  Aligned_cols=153  Identities=25%  Similarity=0.434  Sum_probs=119.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .++|+++|++|+|||||+++|..+.+.. +.++.+.++  ..+.+++  +.+.+||+||++.+...+..+++++|++|+|
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            5799999999999999999999887764 446655443  3344443  6789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFA-----EDQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      ||+++++++.....|+..+..... .++|++|++||+|+.+  ....++..+..     ...++++++|||++|.|++++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~  167 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG  167 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence            999999888888777776654332 5699999999999865  22334332222     223457999999999999999


Q ss_pred             HHHHHH
Q 026548          182 FFRLLQ  187 (237)
Q Consensus       182 ~~~l~~  187 (237)
                      |++|.+
T Consensus       168 ~~~l~~  173 (174)
T cd04153         168 LDWIAS  173 (174)
T ss_pred             HHHHhc
Confidence            999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.94  E-value=7.9e-26  Score=170.50  Aligned_cols=152  Identities=24%  Similarity=0.463  Sum_probs=118.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      +|+++|++|+|||||+++|.+..+... .++.+..+  ..+..+ ..+.+.+||+||++.+...+..++..+|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999887543 46655443  333333 34679999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHH------HHcCCeEEEEcCCCCCCHHHHH
Q 026548          110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFA------EDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      ++++.++.....|+..+..... .+.|++||+||+|+...  ...+++....      ...++++++|||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9999988888888887654322 57999999999998642  2233332221      1234568999999999999999


Q ss_pred             HHHHH
Q 026548          183 FRLLQ  187 (237)
Q Consensus       183 ~~l~~  187 (237)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            98864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.94  E-value=5.7e-26  Score=172.82  Aligned_cols=151  Identities=22%  Similarity=0.368  Sum_probs=119.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      +|+++|++|||||||+++|.+. +...+.++.+..  ...+...+  +.+.+||+||++.+..++..+++++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999977 555666776654  33444544  678999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHH------HHHHcC--CeEEEEcCCCC-----
Q 026548          110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVE------FAEDQG--LFFSEASALNG-----  175 (237)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~------~~~~~~--~~~~~~Sa~~~-----  175 (237)
                      +++..+++.+..|+..+..... .++|++||+||.|+...+  ..++..+      ++.+.+  +.+++|||++|     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            9999999999999988876533 579999999999987633  2222222      222223  45778999998     


Q ss_pred             -CCHHHHHHHHHH
Q 026548          176 -DNVDTAFFRLLQ  187 (237)
Q Consensus       176 -~gi~~~~~~l~~  187 (237)
                       .|+.+.|+||..
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00879 Sar1 Sar1 subfamily

Probab=99.94  E-value=2.2e-25  Score=172.98  Aligned_cols=155  Identities=22%  Similarity=0.315  Sum_probs=124.7

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ...+|+++|++|||||||+++|.+..+. .+.++.+..  ...+.+++  +.+.+||+||+..+...+..+++.+|++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4679999999999999999999988764 344554433  34455665  568899999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH----------------cCCeEEE
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAED----------------QGLFFSE  169 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~  169 (237)
                      |+|+++..++.....|+..+..... .+.|++|++||+|+..  ....++..+....                ....+++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM  170 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence            9999999888888888888765433 5799999999999864  4556666665542                2245899


Q ss_pred             EcCCCCCCHHHHHHHHHHH
Q 026548          170 ASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       170 ~Sa~~~~gi~~~~~~l~~~  188 (237)
                      |||++|.|++++|++|.+.
T Consensus       171 ~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         171 CSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             eEecCCCChHHHHHHHHhh
Confidence            9999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.94  E-value=1.8e-25  Score=169.77  Aligned_cols=152  Identities=25%  Similarity=0.429  Sum_probs=118.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCc------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFF------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      +|+|+|++|+|||||+++|.+....      ..+.++.+..+  ..+.+++  +.+.+|||||++.+..++..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            5899999999999999999864321      12234444443  3444554  678899999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-------cCCeEEEEcCCCC
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAED-------QGLFFSEASALNG  175 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~  175 (237)
                      +++|+|++++.++.....|+..+..... .++|++|++||+|+..  ....++..++...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            9999999999888888888887665432 5799999999999865  3344445544432       2457999999999


Q ss_pred             CCHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQ  187 (237)
Q Consensus       176 ~gi~~~~~~l~~  187 (237)
                      .|++++|++|.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.94  E-value=1.6e-25  Score=168.52  Aligned_cols=151  Identities=25%  Similarity=0.453  Sum_probs=119.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      ||+++|.+|+|||||++++++... ..+.++.+...  ..+.+.+  +.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999883 34445555443  3344444  678899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHHHHHH
Q 026548          110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAED-----QGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      ++++.++.....|+..+..... .+.|+++++||+|+....  ..++..+....     ..++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            9999999998888887665432 679999999999987533  33444443322     345799999999999999999


Q ss_pred             HHHH
Q 026548          184 RLLQ  187 (237)
Q Consensus       184 ~l~~  187 (237)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            8864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04151 Arl1 Arl1 subfamily

Probab=99.94  E-value=3.1e-25  Score=167.10  Aligned_cols=151  Identities=25%  Similarity=0.375  Sum_probs=113.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      ||+++|++++|||||+++|....+.. +.++.+.+..  .+...  .+.+.+|||||++.+..++..+++.+|++|+|||
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998877643 3455554432  33333  3678999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHH
Q 026548          110 ITKRQSFDHVARWVEELRA-HADSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      ++++.++.....|+..+.. ....++|++||+||+|+....  ...+..+...     ..+.+++++||+++.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998887776665554433 222479999999999986432  2233322211     1234699999999999999999


Q ss_pred             HHHH
Q 026548          184 RLLQ  187 (237)
Q Consensus       184 ~l~~  187 (237)
                      +|++
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PTZ00099 rab6; Provisional

Probab=99.94  E-value=1.1e-24  Score=166.84  Aligned_cols=141  Identities=35%  Similarity=0.678  Sum_probs=127.7

Q ss_pred             CCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhc
Q 026548           51 NEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA  130 (237)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~  130 (237)
                      +.|...+.+|++.++..+.+.+++..+++.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45667788999999988888999999999999999999999999999999999999999999999999999999987765


Q ss_pred             CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548          131 DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       131 ~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~  191 (237)
                      ..++|++||+||+|+...+.+..+++..++..+++.|++|||++|.||+++|++|++.+.+
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5678999999999997666778888889999899999999999999999999999988755

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=5.7e-25  Score=179.82  Aligned_cols=144  Identities=28%  Similarity=0.496  Sum_probs=124.2

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECC-------------EEEEEEEEeCCCcc
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-------------KIIKAQIWDTAGQE   88 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~   88 (237)
                      ..+....+||+|+|+.|+|||||+++|.++.+...+.+|++.++..+.+.+++             ..+.+.||||+|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            44556679999999999999999999999998888889998888777776642             46889999999999


Q ss_pred             hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCc---C---
Q 026548           89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD------------SSIRIILIGNKSDLVDMR---A---  150 (237)
Q Consensus        89 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~vvv~nK~D~~~~~---~---  150 (237)
                      .|..++..+++++|++|+|||+++..+++.+..|++.+.....            .++|++||+||+|+...+   .   
T Consensus        95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~  174 (334)
T PLN00023         95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG  174 (334)
T ss_pred             hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence            9999999999999999999999999999999999999987631            258999999999996542   2   


Q ss_pred             CCHHHHHHHHHHcCC
Q 026548          151 VSAEDAVEFAEDQGL  165 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~  165 (237)
                      ...+++++++++.++
T Consensus       175 ~~~e~a~~~A~~~g~  189 (334)
T PLN00023        175 NLVDAARQWVEKQGL  189 (334)
T ss_pred             ccHHHHHHHHHHcCC
Confidence            357899999999874

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.93  E-value=1.5e-24  Score=166.12  Aligned_cols=157  Identities=27%  Similarity=0.468  Sum_probs=126.8

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+++|..|||||||+++|..+.... ..||.+..  ...+...+  +.+.+||.+|+..++..|..++..+|++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            567899999999999999999999876443 44665544  44566666  56889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH------cCCeEEEEcCCCCCCH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAED------QGLFFSEASALNGDNV  178 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi  178 (237)
                      ||+|+++.+.+......+..+..... .++|++|++||.|+.+  ....+++......      ..+.++.|||.+|+|+
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv  164 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV  164 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence            99999998888888777777665433 6899999999999875  4455555554432      2345899999999999


Q ss_pred             HHHHHHHHHHH
Q 026548          179 DTAFFRLLQEI  189 (237)
Q Consensus       179 ~~~~~~l~~~i  189 (237)
                      .+.|+||.+.|
T Consensus       165 ~e~l~WL~~~~  175 (175)
T PF00025_consen  165 DEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999998865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.93  E-value=1.7e-24  Score=167.20  Aligned_cols=154  Identities=19%  Similarity=0.248  Sum_probs=120.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .++|+++|.+|+|||||+++|.+..+.. +.++.+..  ...+.+++  +++.+||+||++.+..++..++..+|++|+|
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v   91 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYL   91 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            4899999999999999999999887643 33444332  23344444  6788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH------------cCCeEEEEcCCC
Q 026548          108 YDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAED------------QGLFFSEASALN  174 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~  174 (237)
                      +|++++.++.....++..+.... ..++|++||+||.|+..  ..+.+++.+....            ....+++|||++
T Consensus        92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~  169 (184)
T smart00178       92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR  169 (184)
T ss_pred             EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence            99999998888887777765432 25799999999999864  4455555544321            123489999999


Q ss_pred             CCCHHHHHHHHHHH
Q 026548          175 GDNVDTAFFRLLQE  188 (237)
Q Consensus       175 ~~gi~~~~~~l~~~  188 (237)
                      +.|+++++++|..+
T Consensus       170 ~~g~~~~~~wl~~~  183 (184)
T smart00178      170 RMGYGEGFKWLSQY  183 (184)
T ss_pred             CCChHHHHHHHHhh
Confidence            99999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.93  E-value=6.9e-24  Score=158.91  Aligned_cols=151  Identities=24%  Similarity=0.436  Sum_probs=120.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEEC
Q 026548           31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDI  110 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~  110 (237)
                      |+++|++|+|||||+++|.+..+...+.++.+..+..  +..++  +.+.+||+||++.+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7999999999999999999999888887887766542  33444  6789999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          111 TKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFA-----EDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       111 ~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      ++..++.....|+..+..... .++|+++|+||.|+....  ..+...+..     ....++++++|++++.|++++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            999888888777777654322 578999999999986532  222222221     122357899999999999999999


Q ss_pred             HHH
Q 026548          185 LLQ  187 (237)
Q Consensus       185 l~~  187 (237)
                      |.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.92  E-value=3.3e-24  Score=162.90  Aligned_cols=156  Identities=18%  Similarity=0.199  Sum_probs=109.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc---------hhhHhhhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR---------AVTSAYYR   99 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~   99 (237)
                      .+|+++|.+|+|||||+++|.+..+.....+..+.......+..+  .+.+.+|||||.....         ........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999999987643322222233333333333  3678999999974211         11111223


Q ss_pred             CCcEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548          100 GALGAVVVYDITKRQS--FDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN  177 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  177 (237)
                      .+|++|+|+|+++..+  .+....|+..+.... .+.|+++|+||+|+.......  ...++....+.++++|||++|.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence            4689999999998654  355667777776543 479999999999986543322  24455555667899999999999


Q ss_pred             HHHHHHHHHHHH
Q 026548          178 VDTAFFRLLQEI  189 (237)
Q Consensus       178 i~~~~~~l~~~i  189 (237)
                      ++++|+++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01890 LepA LepA subfamily

Probab=99.92  E-value=3.7e-24  Score=164.32  Aligned_cols=154  Identities=21%  Similarity=0.248  Sum_probs=112.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC-------CcCCCCCC------cceeEEEEEEEE-----CCEEEEEEEEeCCCcchhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE-------FFFDSKST------IGVEFQTRTVTI-----NGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~-------~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~   91 (237)
                      +|+++|++++|||||+++|++..       +...+.++      .+.++......+     ++..+.+.||||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            69999999999999999998742       11111121      122333332222     5567889999999999999


Q ss_pred             hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe---EE
Q 026548           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF---FS  168 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~  168 (237)
                      ..+..+++.+|++|+|||+++..+...+..|.... .   .++|+++|+||+|+.+..  ..+...+++..++++   ++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~---~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E---NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H---cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999876666665554332 1   468999999999986422  222334556666653   89


Q ss_pred             EEcCCCCCCHHHHHHHHHHHH
Q 026548          169 EASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       169 ~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      ++||++|.|++++|++|.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999988764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01898 Obg Obg subfamily

Probab=99.92  E-value=6.2e-24  Score=161.66  Aligned_cols=157  Identities=18%  Similarity=0.161  Sum_probs=113.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc----hhchhhHhh---hcCCc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE----RYRAVTSAY---YRGAL  102 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~---~~~~d  102 (237)
                      +|+++|.+|+|||||+++|.+........+..+.+.....+..++. ..+.+|||||..    ....+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999976543222222233333333444442 368899999963    222233333   34699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-cCCeEEEEcCCCCCCH
Q 026548          103 GAVVVYDITKR-QSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAED-QGLFFSEASALNGDNV  178 (237)
Q Consensus       103 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi  178 (237)
                      ++++|+|++++ .+++.+..|.+.+.....  .++|+++|+||+|+...... .+....+... .+.+++++||+++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788899899888876542  36899999999998654333 3344455555 3678999999999999


Q ss_pred             HHHHHHHHHH
Q 026548          179 DTAFFRLLQE  188 (237)
Q Consensus       179 ~~~~~~l~~~  188 (237)
                      +++|+++.++
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01878 HflX HflX subfamily

Probab=99.92  E-value=7e-24  Score=166.39  Aligned_cols=158  Identities=20%  Similarity=0.194  Sum_probs=116.1

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch---------hchhhH
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER---------YRAVTS   95 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~   95 (237)
                      ....++|+|+|++|||||||+++|.+..+.....+..+.+.....+.+++. ..+.+|||||...         +...+ 
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-  115 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-  115 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence            455689999999999999999999998754433333334444444555443 2688999999732         22211 


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548           96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG  175 (237)
Q Consensus        96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  175 (237)
                      ..+..+|++++|+|++++.+......|...+......++|+++|+||+|+......     ..+....+.+++++||+++
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~  190 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTG  190 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCC
Confidence            23678999999999999888887777777776655457899999999998653221     1344556678999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQEI  189 (237)
Q Consensus       176 ~gi~~~~~~l~~~i  189 (237)
                      .|++++|++|.+.+
T Consensus       191 ~gi~~l~~~L~~~~  204 (204)
T cd01878         191 EGLDELLEAIEELL  204 (204)
T ss_pred             CCHHHHHHHHHhhC
Confidence            99999999987653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.92  E-value=4.4e-23  Score=154.04  Aligned_cols=157  Identities=36%  Similarity=0.540  Sum_probs=126.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+++|.+|+|||||+++|....+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++.++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            36999999999999999999999997777778888888777777887767899999999999999999999999999999


Q ss_pred             EECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          108 YDITKR-QSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       108 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|.... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||.++.|+.++|++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            998876 6666554 66666666554488999999999986533 22323333334445679999999999999999876

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.92  E-value=5.2e-23  Score=149.16  Aligned_cols=161  Identities=22%  Similarity=0.407  Sum_probs=129.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ++.++|.++|..||||||++++|.+.. .....|+.+  +..+...+++  +++++||.+|+...+..|..|+...|++|
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            347899999999999999999999877 333446655  4445555555  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHH------HHHHHcCCeEEEEcCCCCCCH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAV------EFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~------~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                      +|||..++..++.....+..+..... .+.|++|++||.|+.+  .++.+++.      ++++...++++-||+.+|+++
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l  166 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL  166 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence            99999999888887666666444333 6789999999999975  34444333      344567789999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 026548          179 DTAFFRLLQEIYGAV  193 (237)
Q Consensus       179 ~~~~~~l~~~i~~~~  193 (237)
                      .+.+.||++.+.++.
T Consensus       167 ~~gidWL~~~l~~r~  181 (185)
T KOG0073|consen  167 LEGIDWLCDDLMSRL  181 (185)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988754

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=3.3e-23  Score=172.93  Aligned_cols=163  Identities=17%  Similarity=0.098  Sum_probs=122.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh----chhh---HhhhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY----RAVT---SAYYRG  100 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~---~~~~~~  100 (237)
                      ...|+|+|.||||||||+++|.+........+.++.......+.+.+ ...+.+||+||....    ..+.   ...+.+
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            46799999999999999999998664433335555555555555532 135789999996421    1222   234567


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548          101 ALGAVVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus       101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                      ++++|+|||+++.++++.+..|.+.+..+..  .+.|++||+||+|+........+....++...+.+++++||+++.|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            9999999999988788999999998877643  47899999999998764444333455555666788999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 026548          179 DTAFFRLLQEIYG  191 (237)
Q Consensus       179 ~~~~~~l~~~i~~  191 (237)
                      ++++++|.+.+.+
T Consensus       317 ~eL~~~L~~~l~~  329 (335)
T PRK12299        317 DELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>cd04155 Arl3 Arl3 subfamily

Probab=99.91  E-value=6.1e-23  Score=156.73  Aligned_cols=150  Identities=22%  Similarity=0.389  Sum_probs=115.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .++|+++|++|+|||||+++|.+..+.. ..++.+..  ...+..++  ..+.+||+||+..+...+..+++.+|++++|
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v   88 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV   88 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence            6899999999999999999999876543 33554433  23444555  5688999999999988888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC--------eEEEEcCCCCCCH
Q 026548          108 YDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL--------FFSEASALNGDNV  178 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~gi  178 (237)
                      +|+.+..++.....|+..+.... ..++|+++++||+|+....  ..++.   ....++        +++++||++|.|+
T Consensus        89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~~gi  163 (173)
T cd04155          89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEI---AEALNLHDLRDRTWHIQACSAKTGEGL  163 (173)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHH---HHHcCCcccCCCeEEEEEeECCCCCCH
Confidence            99999888888777776654432 2579999999999986522  22222   233332        4789999999999


Q ss_pred             HHHHHHHHH
Q 026548          179 DTAFFRLLQ  187 (237)
Q Consensus       179 ~~~~~~l~~  187 (237)
                      +++|++|++
T Consensus       164 ~~~~~~l~~  172 (173)
T cd04155         164 QEGMNWVCK  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=99.91  E-value=3.7e-23  Score=156.24  Aligned_cols=151  Identities=19%  Similarity=0.180  Sum_probs=105.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC---CcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE---FFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      .|+++|++|+|||||+++|.+..   +.....++.+.+.....+.+.+ ...+.+|||||++.+......+++.+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            58999999999999999999643   2223334444555445555542 2578899999999988777778899999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--CCHHHHHHHHHH---cCCeEEEEcCCCCCCH
Q 026548          107 VYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA--VSAEDAVEFAED---QGLFFSEASALNGDNV  178 (237)
Q Consensus       107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi  178 (237)
                      |+|+++   .++.+.+    ..+...  ...|+++++||+|+.....  ...++..+....   .+.+++++||+++.|+
T Consensus        81 V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  154 (164)
T cd04171          81 VVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI  154 (164)
T ss_pred             EEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence            999987   3333322    222221  1248999999999865321  112334444444   3578999999999999


Q ss_pred             HHHHHHHHH
Q 026548          179 DTAFFRLLQ  187 (237)
Q Consensus       179 ~~~~~~l~~  187 (237)
                      +++|+.+.+
T Consensus       155 ~~l~~~l~~  163 (164)
T cd04171         155 EELKEYLDE  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.91  E-value=2.1e-22  Score=159.51  Aligned_cols=170  Identities=39%  Similarity=0.568  Sum_probs=140.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|+.|+|||||+++|....+...+.++.+..+........+..+.+.+|||+|++.++.++..++.++++++++|
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~   85 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY   85 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence            89999999999999999999999999999888887777777777665788999999999999999999999999999999


Q ss_pred             ECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------CCCHHHHHHHHHHc---CCeEEEEcC
Q 026548          109 DITK-RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR------------AVSAEDAVEFAEDQ---GLFFSEASA  172 (237)
Q Consensus       109 d~~~-~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~Sa  172 (237)
                      |..+ ..+.+....|...+........|+++++||+|+....            ....+.........   ...++++|+
T Consensus        86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  165 (219)
T COG1100          86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA  165 (219)
T ss_pred             ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence            9999 5666667889989888775579999999999997643            22222222222222   233899999


Q ss_pred             C--CCCCHHHHHHHHHHHHHHhhhcccc
Q 026548          173 L--NGDNVDTAFFRLLQEIYGAVSKKEL  198 (237)
Q Consensus       173 ~--~~~gi~~~~~~l~~~i~~~~~~~~~  198 (237)
                      .  .+.++.++|..+.+.+.+.......
T Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~  193 (219)
T COG1100         166 KSLTGPNVNELFKELLRKLLEEIEKLVL  193 (219)
T ss_pred             ccCCCcCHHHHHHHHHHHHHHhhhhhhh
Confidence            9  9999999999999999877655443

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.90  E-value=3.6e-23  Score=153.08  Aligned_cols=134  Identities=24%  Similarity=0.245  Sum_probs=99.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc-----hhchhhHhhhcCCcEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE-----RYRAVTSAYYRGALGA  104 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~~  104 (237)
                      ||+++|++|+|||||+++|.+..+.  +.++.+.+       +..     .+|||||..     .+..+. ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            7999999999999999999988652  22332222       111     589999972     233333 357999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVDTAFF  183 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~  183 (237)
                      |+|||++++.++.. ..|...+      ..|+++|+||+|+.+ .....+...++++..+. +++++||++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999887654 2343321      249999999999864 33456677788887776 799999999999999998


Q ss_pred             HHH
Q 026548          184 RLL  186 (237)
Q Consensus       184 ~l~  186 (237)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=4.7e-23  Score=152.94  Aligned_cols=148  Identities=20%  Similarity=0.252  Sum_probs=110.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh------chhhHhhh--cC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY------RAVTSAYY--RG  100 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~--~~  100 (237)
                      ++|+++|.||+|||||+|+|++.+......|..+.+.....+...+  ..+.++|+||.-..      ......++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999997766778888888888888888  45779999993221      22333443  68


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          101 ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                      .|++|+|+|+++.+   +-.+...++..   .++|+++++||+|......... +...+.+.++++++.+||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~---r~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLE---RNLYLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHH---HHHHHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHH---HHHHHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            99999999998743   22233444444   4799999999999866544433 36677888999999999999999999


Q ss_pred             HHHHH
Q 026548          181 AFFRL  185 (237)
Q Consensus       181 ~~~~l  185 (237)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.90  E-value=4.9e-22  Score=146.98  Aligned_cols=153  Identities=45%  Similarity=0.773  Sum_probs=121.3

Q ss_pred             EEcCCCCcHHHHHHHHhcCCC-cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECC
Q 026548           33 VIGDSAVGKSQILSRFTKNEF-FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT  111 (237)
Q Consensus        33 v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~  111 (237)
                      |+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999999887 34444554 6677777777777788999999999988888888999999999999999


Q ss_pred             ChhhHHHHHHHHHH-HHHhcCCCCcEEEEEeCCCCCCCcCCCHHH-HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          112 KRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDMRAVSAED-AVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       112 ~~~s~~~~~~~~~~-~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ++.+......|+.. .......+.|+++++||+|+.......... ..........+++++|+.++.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            99998888877333 233333789999999999986543332222 3344455678899999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.90  E-value=2.7e-22  Score=150.65  Aligned_cols=147  Identities=18%  Similarity=0.197  Sum_probs=112.1

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch------hhHhhhc--CCcEE
Q 026548           33 VIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA------VTSAYYR--GALGA  104 (237)
Q Consensus        33 v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~  104 (237)
                      |+|.+|+|||||+++|.+........++.+.+.....+.+++  ..+.+|||||+..+..      +...++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998875555556666666666677776  4688999999877654      3455564  99999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |+|+|+++....   ..|+..+..   .++|+++++||+|+........ ....++..++.+++++|+.++.|+++++++
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            999999885443   234444433   4689999999999976444433 345677778899999999999999999988


Q ss_pred             HHHH
Q 026548          185 LLQE  188 (237)
Q Consensus       185 l~~~  188 (237)
                      +.+.
T Consensus       152 l~~~  155 (158)
T cd01879         152 IAEL  155 (158)
T ss_pred             HHHH
Confidence            8775

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK04213 GTP-binding protein; Provisional

Probab=99.90  E-value=3.7e-23  Score=161.90  Aligned_cols=154  Identities=23%  Similarity=0.251  Sum_probs=104.4

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC-----------cchhch
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG-----------QERYRA   92 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~   92 (237)
                      .....++|+++|.+|+|||||+++|.+..+.....++.+  +....+...    .+.+|||||           .+.+..
T Consensus         5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~   78 (201)
T PRK04213          5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD   78 (201)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence            334568999999999999999999999886554445443  333333333    478999999           455666


Q ss_pred             hhHhhhc----CCcEEEEEEECCChhhH-H---------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH
Q 026548           93 VTSAYYR----GALGAVVVYDITKRQSF-D---------HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE  158 (237)
Q Consensus        93 ~~~~~~~----~~d~~ilv~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~  158 (237)
                      .+..++.    .++++++|+|.++.... +         .-......+..   .++|++||+||+|+....   .+...+
T Consensus        79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~  152 (201)
T PRK04213         79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR---DEVLDE  152 (201)
T ss_pred             HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH---HHHHHH
Confidence            5555553    45788888887653211 0         00111222222   479999999999986532   334556


Q ss_pred             HHHHcCC---------eEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          159 FAEDQGL---------FFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       159 ~~~~~~~---------~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      +...+++         +++++||++| |++++|++|.+.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence            6666654         4799999999 99999999988753

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.90  E-value=2.9e-22  Score=168.52  Aligned_cols=155  Identities=20%  Similarity=0.188  Sum_probs=114.6

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc---------hhchhhHh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE---------RYRAVTSA   96 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~   96 (237)
                      ...++|+++|.+|+|||||+|+|++..+.....+..+.++....+.+++. ..+.||||+|..         .+...+ .
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence            34589999999999999999999998754444455556666677777432 468899999972         232222 2


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548           97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD  176 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  176 (237)
                      .+..+|++|+|+|++++.+.+.+..|...+......+.|+++|+||+|+....     ..... .....+++++||++|.
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~  338 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGE  338 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCC
Confidence            47899999999999998888777777666665544578999999999986422     12111 1223468999999999


Q ss_pred             CHHHHHHHHHHH
Q 026548          177 NVDTAFFRLLQE  188 (237)
Q Consensus       177 gi~~~~~~l~~~  188 (237)
                      |+++++++|.+.
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999888754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.89  E-value=3.5e-22  Score=151.63  Aligned_cols=156  Identities=18%  Similarity=0.171  Sum_probs=109.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      .|+|+|.+|+|||||+++|....+.....++.+.+.....+... +....+.+|||||++.+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999888766544454444443444443 12467889999999999988888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC-HHHHHHHHH------HcCCeEEEEcCCCCCCHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS-AEDAVEFAE------DQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      |+++....... ..+..+..   .++|+++|+||+|+....... .+...++..      ...++++++|++++.|++++
T Consensus        82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            99874322221 11222222   478999999999986422110 111111111      11357999999999999999


Q ss_pred             HHHHHHHH
Q 026548          182 FFRLLQEI  189 (237)
Q Consensus       182 ~~~l~~~i  189 (237)
                      +++|.+..
T Consensus       158 ~~~l~~~~  165 (168)
T cd01887         158 LEAILLLA  165 (168)
T ss_pred             HHHHHHhh
Confidence            99988764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.89  E-value=7.4e-22  Score=164.66  Aligned_cols=160  Identities=19%  Similarity=0.166  Sum_probs=117.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh----chhhHhh---hcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY----RAVTSAY---YRG  100 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~~~---~~~  100 (237)
                      ...|+|+|.||||||||+++|..........+.++.......+.+++ ...+.|||+||....    ..+...+   +.+
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            46899999999999999999998764333334444555555555554 246789999996432    1233333   457


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548          101 ALGAVVVYDITKR---QSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG  175 (237)
Q Consensus       101 ~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  175 (237)
                      +|++|+|+|+++.   .+++.+..|.+++..+..  .+.|++||+||+|+..... ..+...++....+.+++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999976   677888888888766542  4789999999999875432 233445566667788999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQEI  189 (237)
Q Consensus       176 ~gi~~~~~~l~~~i  189 (237)
                      .|++++++++.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999988754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.89  E-value=3.1e-22  Score=155.88  Aligned_cols=149  Identities=17%  Similarity=0.190  Sum_probs=104.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc--CCCcCCC------------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhh
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK--NEFFFDS------------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVT   94 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   94 (237)
                      .+|+++|.+++|||||+++|+.  ..+...+            ..+.+.++......+....+.+.+|||||++.|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  4443322            1223334444444444445788999999999999999


Q ss_pred             HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC-CCHHHHHHHHH-------HcCCe
Q 026548           95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA-VSAEDAVEFAE-------DQGLF  166 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  166 (237)
                      ..+++++|++++|||+++.. ......|+..+..   .++|+++++||+|+..... ...++..++..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998732 2223333443332   4789999999999864321 11334444442       23678


Q ss_pred             EEEEcCCCCCCHHHH
Q 026548          167 FSEASALNGDNVDTA  181 (237)
Q Consensus       167 ~~~~Sa~~~~gi~~~  181 (237)
                      ++++||++|.|+.+.
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999887544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=5.8e-22  Score=173.54  Aligned_cols=186  Identities=22%  Similarity=0.181  Sum_probs=125.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc----------hhchhh-
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE----------RYRAVT-   94 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~-   94 (237)
                      ..++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++..  +.||||||..          .+..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999998753 2334566666666667777754  5699999952          233322 


Q ss_pred             HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHH-HHHHcCCeEEEEc
Q 026548           95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVE-FAEDQGLFFSEAS  171 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~S  171 (237)
                      ..+++.+|++|+|||+++..++..+. ++..+..   .++|++||+||+|+......  ..++..+ +.....++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            23578999999999999987777663 4444433   47899999999999642211  0111111 1222346899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcc------ccccCCCccCCCCCCCCCcccc
Q 026548          172 ALNGDNVDTAFFRLLQEIYGAVSKK------ELECGNGKVDGPPMLAGSKIDV  218 (237)
Q Consensus       172 a~~~~gi~~~~~~l~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  218 (237)
                      |++|.|++++|+.+.+.+.....+.      .+........+||...|+.+++
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p~~~g~~~k~  416 (472)
T PRK03003        364 AKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPPVRGGKQPRI  416 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCCCCeeeeE
Confidence            9999999999999887654322211      1222223445566667777665

>TIGR00436 era GTP-binding protein Era

Probab=99.88  E-value=1e-21  Score=160.46  Aligned_cols=152  Identities=18%  Similarity=0.121  Sum_probs=104.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hhHhhhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VTSAYYRG  100 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~  100 (237)
                      +|+|+|.+|+|||||+|+|++.++...+. +.++.... ..+...+. .++.||||||......        .....+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i-~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI-SGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE-EEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999988754433 33333322 23333222 4688999999654211        13346789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHH
Q 026548          101 ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVD  179 (237)
Q Consensus       101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  179 (237)
                      +|++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+..... ..+....+....+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999866553  334444433   4689999999999864222 12234444444444 69999999999999


Q ss_pred             HHHHHHHHHH
Q 026548          180 TAFFRLLQEI  189 (237)
Q Consensus       180 ~~~~~l~~~i  189 (237)
                      ++++++.+.+
T Consensus       154 ~L~~~l~~~l  163 (270)
T TIGR00436       154 FLAAFIEVHL  163 (270)
T ss_pred             HHHHHHHHhC
Confidence            9888876654

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.88  E-value=5.3e-22  Score=151.66  Aligned_cols=154  Identities=22%  Similarity=0.211  Sum_probs=108.0

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchh----chh---hHhhhcCCcEE
Q 026548           33 VIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERY----RAV---TSAYYRGALGA  104 (237)
Q Consensus        33 v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~~d~~  104 (237)
                      ++|++|+|||||+++|.+........+..+.......+.++ +  ..+.+|||||....    ..+   ....++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            58999999999999999987522222333333333444455 4  56789999996322    222   23456789999


Q ss_pred             EEEEECCCh------hhHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEc
Q 026548          105 VVVYDITKR------QSFDHVARWVEELRAHAD-------SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus       105 ilv~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  171 (237)
                      ++|+|+.+.      .+++.+..|...+.....       .+.|+++|+||+|+..................+..++++|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            999999987      577777777777665432       3699999999999875433322222333444567799999


Q ss_pred             CCCCCCHHHHHHHHHHH
Q 026548          172 ALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       172 a~~~~gi~~~~~~l~~~  188 (237)
                      |+++.|++++++++.+.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999988764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1e-21  Score=145.92  Aligned_cols=158  Identities=22%  Similarity=0.380  Sum_probs=129.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ...+|+++|-.+|||||++.+|...++... .||++.......  +.  .+.+.+||.+|+++++.+|..|+++.+++||
T Consensus        16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~--yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf   90 (181)
T KOG0070|consen   16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVE--YK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIF   90 (181)
T ss_pred             ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEE--Ec--ceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence            357999999999999999999998887655 688776665444  44  4789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-----LFFSEASALNGDNVDT  180 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  180 (237)
                      |+|.+|.+-+...+..+..+..... .+.|+++++||.|+++  ..+..++.+......     ..+..|+|.+|+|+.+
T Consensus        91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e  168 (181)
T KOG0070|consen   91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE  168 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence            9999999888888877777766655 6899999999999987  445555554444332     3366789999999999


Q ss_pred             HHHHHHHHHHH
Q 026548          181 AFFRLLQEIYG  191 (237)
Q Consensus       181 ~~~~l~~~i~~  191 (237)
                      .++++...+..
T Consensus       169 gl~wl~~~~~~  179 (181)
T KOG0070|consen  169 GLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHhc
Confidence            99999887754

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.88  E-value=2.7e-21  Score=167.03  Aligned_cols=155  Identities=24%  Similarity=0.209  Sum_probs=119.2

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh--------hHh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV--------TSA   96 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~   96 (237)
                      ...++|+++|++|+|||||+|+|++..... ...++++.++....+.+++.  .+.+|||||...+...        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            346899999999999999999999876432 33356667777777788874  5679999997654432        235


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548           97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD  176 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  176 (237)
                      +++.+|++|+|||++++.+.+..  |+..+..   .+.|+++|+||+|+...      ....++..++.+++++||++ .
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~  346 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-L  346 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-C
Confidence            67899999999999988776654  6665543   46899999999998642      12345566778899999997 6


Q ss_pred             CHHHHHHHHHHHHHHhhh
Q 026548          177 NVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       177 gi~~~~~~l~~~i~~~~~  194 (237)
                      |++++|+.+.+.+.+...
T Consensus       347 gI~~~~~~L~~~i~~~~~  364 (442)
T TIGR00450       347 KIKALVDLLTQKINAFYS  364 (442)
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999998877653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.88  E-value=4.1e-21  Score=137.75  Aligned_cols=168  Identities=26%  Similarity=0.361  Sum_probs=137.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCC--CCCcceeEEEEEEEE-CCEEEEEEEEeCCCcchh-chhhHhhhcCCcE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDS--KSTIGVEFQTRTVTI-NGKIIKAQIWDTAGQERY-RAVTSAYYRGALG  103 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~d~  103 (237)
                      .-||+|+|.-++|||+++..|..++..+..  .+|+. +.+...+.. .|...++.|+||.|...+ ..+-..++.-+|+
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            568999999999999999999877665543  35554 333344333 455567999999997766 6677889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      +++|||..+++||+.+......+....+ ..+|++|++||+|+.+.+++..+.+..|+.+..+.++++++.+..++-+.|
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence            9999999999999987666565655544 679999999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcc
Q 026548          183 FRLLQEIYGAVSKK  196 (237)
Q Consensus       183 ~~l~~~i~~~~~~~  196 (237)
                      .+++..+..--.++
T Consensus       168 ~~l~~rl~~pqskS  181 (198)
T KOG3883|consen  168 TYLASRLHQPQSKS  181 (198)
T ss_pred             HHHHHhccCCcccc
Confidence            99998876655443

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.88  E-value=3e-21  Score=144.51  Aligned_cols=146  Identities=23%  Similarity=0.246  Sum_probs=108.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh--------hHhhhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV--------TSAYYR   99 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~   99 (237)
                      ++|+++|++|+|||||++++.+..... ...++.+..+....+...+  ..+.+|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999887533 2234444455445555555  46789999997654321        234678


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      .+|++++|+|++++.+......+..      ..+.|+++++||+|+......       .....+.+++++||+++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            9999999999998777666544333      247999999999998754332       334456789999999999999


Q ss_pred             HHHHHHHHHH
Q 026548          180 TAFFRLLQEI  189 (237)
Q Consensus       180 ~~~~~l~~~i  189 (237)
                      +++++|...+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999887653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.88  E-value=3.7e-22  Score=142.14  Aligned_cols=153  Identities=22%  Similarity=0.402  Sum_probs=125.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      ...+.++|-.+||||||+|.+..+.+.....|++++....    +....+.+.+||.||+..|+.+|..|.+.+++++||
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            3579999999999999999999888888888888765432    334457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--------CeEEEEcCCCCCCH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--------LFFSEASALNGDNV  178 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi  178 (237)
                      +|+.+++.+...+..++.+..... .++|++|++||.|+.+  .....   ++..++|        +..|.+|+++..++
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~---~li~rmgL~sitdREvcC~siScke~~Ni  170 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKI---ALIERMGLSSITDREVCCFSISCKEKVNI  170 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHH---HHHHHhCccccccceEEEEEEEEcCCccH
Confidence            999999888877776666655444 7899999999999876  33332   3333333        35889999999999


Q ss_pred             HHHHHHHHHHH
Q 026548          179 DTAFFRLLQEI  189 (237)
Q Consensus       179 ~~~~~~l~~~i  189 (237)
                      +.+..||+++-
T Consensus       171 d~~~~Wli~hs  181 (186)
T KOG0075|consen  171 DITLDWLIEHS  181 (186)
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.88  E-value=6.2e-22  Score=142.31  Aligned_cols=167  Identities=25%  Similarity=0.463  Sum_probs=145.7

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      .....+||.++|++..|||||+-.+.++.++..+..+.+..+..+.+.+.+..+.+.+||.+|++++..+.......+-+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            44457999999999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------cCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM------RAVSAEDAVEFAEDQGLFFSEASALNGDN  177 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  177 (237)
                      ++++||++.+.++..+..|+.+.+...+..+|+ +|++|.|..-.      +++ ...++..++-+++++++||+..+.+
T Consensus        96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I-~~qar~YAk~mnAsL~F~Sts~sIN  173 (205)
T KOG1673|consen   96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETI-SRQARKYAKVMNASLFFCSTSHSIN  173 (205)
T ss_pred             EEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHH-HHHHHHHHHHhCCcEEEeecccccc
Confidence            999999999999999999999999888777776 68999995321      111 2246677888999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 026548          178 VDTAFFRLLQEIYGA  192 (237)
Q Consensus       178 i~~~~~~l~~~i~~~  192 (237)
                      +..+|..+..+++..
T Consensus       174 v~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  174 VQKIFKIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999998777666543

>PRK15494 era GTPase Era; Provisional

Probab=99.87  E-value=4.9e-21  Score=160.76  Aligned_cols=163  Identities=20%  Similarity=0.258  Sum_probs=111.1

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcch-hchhh-------Hh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQER-YRAVT-------SA   96 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~-------~~   96 (237)
                      ...++|+++|.+|+|||||+|+|++..+..... +..+.+.....+..++  .++.||||||... +..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            455799999999999999999999988754322 2233344445556666  4678999999743 22211       12


Q ss_pred             hhcCCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--CeEEEEcCC
Q 026548           97 YYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--LFFSEASAL  173 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  173 (237)
                      .+..+|++|+|+|..+.  +... ..|+..+..   .+.|.++|+||+|+...   ...+..+++...+  ..++++||+
T Consensus       128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            46799999999997653  3333 334554443   35677899999998642   2445556665544  569999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhhhccccccCC
Q 026548          174 NGDNVDTAFFRLLQEIYGAVSKKELECGN  202 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i~~~~~~~~~~~~~  202 (237)
                      +|.|++++|++|.+.+    +..++..++
T Consensus       200 tg~gv~eL~~~L~~~l----~~~~~~~~~  224 (339)
T PRK15494        200 SGKNIDGLLEYITSKA----KISPWLYAE  224 (339)
T ss_pred             CccCHHHHHHHHHHhC----CCCCCCCCC
Confidence            9999999988876644    334444444

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.87  E-value=2.1e-21  Score=139.23  Aligned_cols=114  Identities=32%  Similarity=0.621  Sum_probs=89.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCc--CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFF--FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      ||+|+|++|+|||||+++|++..+.  ....+..+..+......+......+.+||++|++.+...+..++..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  12233444455555666777766799999999999998888889999999999


Q ss_pred             EECCChhhHHHHHH---HHHHHHHhcCCCCcEEEEEeCCC
Q 026548          108 YDITKRQSFDHVAR---WVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus       108 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                      ||++++.+++.+..   |+..+.... .++|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            99999999988754   455555543 5699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=1.5e-20  Score=160.86  Aligned_cols=159  Identities=19%  Similarity=0.186  Sum_probs=117.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----hchhhHhh---hcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----YRAVTSAY---YRGA  101 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---~~~~  101 (237)
                      ..|+|+|.||||||||+++|++........+.++.......+.+++ ...+.+||+||...    ...+...+   +.++
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            4899999999999999999998764433334444444444444441 24688999999643    22233334   4569


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548          102 LGAVVVYDITKR---QSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD  176 (237)
Q Consensus       102 d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  176 (237)
                      +++|+|+|+++.   ++++.+..|.+.+..+..  .+.|++||+||+|+..    ..+...++...++.+++++||+++.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge  313 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ  313 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence            999999999864   677777888888776543  4789999999999843    2344556666667789999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q 026548          177 NVDTAFFRLLQEIYGA  192 (237)
Q Consensus       177 gi~~~~~~l~~~i~~~  192 (237)
                      |+++++++|.+.+.+.
T Consensus       314 GI~eL~~~L~~~l~~~  329 (424)
T PRK12297        314 GLDELLYAVAELLEET  329 (424)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999998876543

>cd01894 EngA1 EngA1 subfamily

Probab=99.87  E-value=5.4e-21  Score=143.23  Aligned_cols=147  Identities=19%  Similarity=0.144  Sum_probs=102.9

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hhHhhhcCCc
Q 026548           32 VVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VTSAYYRGAL  102 (237)
Q Consensus        32 ~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d  102 (237)
                      +++|.+|+|||||+++|.+..... ...+..+.+........++  ..+.+|||||...+..        .+...++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999875322 2223334444445555555  5688999999877543        3345678999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVDTA  181 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~  181 (237)
                      ++++|+|+.+..+.... .+...+..   .+.|+++|+||+|+......     .......+. .++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999875444332 12222322   36999999999998653221     233344565 6899999999999999


Q ss_pred             HHHHHHHH
Q 026548          182 FFRLLQEI  189 (237)
Q Consensus       182 ~~~l~~~i  189 (237)
                      |+++++.+
T Consensus       150 ~~~l~~~~  157 (157)
T cd01894         150 LDAILELL  157 (157)
T ss_pred             HHHHHhhC
Confidence            99998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01889 SelB_euk SelB subfamily

Probab=99.87  E-value=3.2e-21  Score=149.88  Aligned_cols=158  Identities=16%  Similarity=0.096  Sum_probs=102.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC----CCcC---CCCCCcceeEEEEEEEEC------------CEEEEEEEEeCCCcch
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN----EFFF---DSKSTIGVEFQTRTVTIN------------GKIIKAQIWDTAGQER   89 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~----~~~~---~~~~~~~~~~~~~~~~~~------------~~~~~~~l~Dt~G~~~   89 (237)
                      ++|+++|++++|||||+++|+..    .+..   ...+..+.......+.+.            +..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    1111   111223333333333332            3356789999999876


Q ss_pred             hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--CCHHHHHHHHH------
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA--VSAEDAVEFAE------  161 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--~~~~~~~~~~~------  161 (237)
                      +........+.+|++++|+|+.+.........+.  +...  .+.|+++++||+|+.....  ...++..+...      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444444567789999999998754333322222  1122  2579999999999864221  11222222211      


Q ss_pred             -HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          162 -DQGLFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       162 -~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                       ..+++++++||+++.|+++++++|.+++.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             13578999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK11058 GTPase HflX; Provisional

Probab=99.87  E-value=7.6e-21  Score=163.42  Aligned_cols=164  Identities=19%  Similarity=0.207  Sum_probs=117.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh--chhhH------hhhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY--RAVTS------AYYR   99 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~------~~~~   99 (237)
                      .++|+++|.+|+|||||+|+|++..+.....+..+.+.....+.+.+.. .+.+|||+|....  ...+.      ..+.
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            3589999999999999999999887654444555666666666665531 5679999997332  22222      2368


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCCCCCCH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNV  178 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  178 (237)
                      .+|++|+|+|++++.+...+..|...+......++|+++|+||+|+.....   ... . ....+.+ ++++||++|.|+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~-~-~~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRI-D-RDEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHH-H-HHhcCCCceEEEeCCCCCCH
Confidence            999999999999988877776555555544435799999999999864211   111 1 1123445 588999999999


Q ss_pred             HHHHHHHHHHHHHhhhccc
Q 026548          179 DTAFFRLLQEIYGAVSKKE  197 (237)
Q Consensus       179 ~~~~~~l~~~i~~~~~~~~  197 (237)
                      ++++++|.+.+...+...+
T Consensus       351 deL~e~I~~~l~~~~~~~~  369 (426)
T PRK11058        351 PLLFQALTERLSGEVAQHT  369 (426)
T ss_pred             HHHHHHHHHHhhhccEEEE
Confidence            9999999998866554433

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.87  E-value=5e-21  Score=147.85  Aligned_cols=154  Identities=18%  Similarity=0.171  Sum_probs=110.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCC----------------CcceeEEEEEEEECCEEEEEEEEeCCCcchhchh
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKS----------------TIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV   93 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   93 (237)
                      +|+|+|.+|+|||||+++|.+.........                ..+.......+...+  ..+.+|||||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence            589999999999999999998876554322                122232223333333  57889999999999888


Q ss_pred             hHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHHHHH---------
Q 026548           94 TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEFAED---------  162 (237)
Q Consensus        94 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~~~~---------  162 (237)
                      +..+++.+|++++|+|+.++..... ..++..+..   .+.|+++++||+|+......  ..+...+....         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8899999999999999987654332 233344333   47999999999998652211  12233333333         


Q ss_pred             -----cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          163 -----QGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       163 -----~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                           ...+++++||++|.|++++|.++.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 246799999999999999999888764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.87  E-value=6.2e-21  Score=165.61  Aligned_cols=149  Identities=21%  Similarity=0.236  Sum_probs=113.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh--------hHhh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV--------TSAY   97 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~   97 (237)
                      ..++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++  ..+.+|||||...+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3589999999999999999999988753 23345556666667777777  45789999998654432        2236


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548           98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN  177 (237)
Q Consensus        98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  177 (237)
                      +..+|++++|||++++.+++....|..      ..+.|+++|+||+|+.......        ...+.+++++||++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999999877765544433      2478999999999986532221        33456799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 026548          178 VDTAFFRLLQEIYG  191 (237)
Q Consensus       178 i~~~~~~l~~~i~~  191 (237)
                      +++++++|.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887754

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.86  E-value=1.1e-20  Score=168.56  Aligned_cols=156  Identities=20%  Similarity=0.237  Sum_probs=115.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCC-------CcCCCCC------CcceeEEEEEEEE-----CCEEEEEEEEeCCCcch
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNE-------FFFDSKS------TIGVEFQTRTVTI-----NGKIIKAQIWDTAGQER   89 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~   89 (237)
                      ..+|+++|+.++|||||+++|+...       +...+..      ..+.++....+.+     ++..+.+.||||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            5689999999999999999998642       1111211      1233333333322     45668899999999999


Q ss_pred             hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC---e
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL---F  166 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  166 (237)
                      |...+..+++.+|++|+|||+++..+.+....|...+.    .++|+++|+||+|+....  ..+...++...+++   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999998766666666655432    368999999999986421  12223455555665   3


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHH
Q 026548          167 FSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       167 ~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      ++++||++|.|++++|++|.+.+
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhC
Confidence            89999999999999999888765

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=1.7e-20  Score=163.06  Aligned_cols=186  Identities=22%  Similarity=0.200  Sum_probs=121.7

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh-----------
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV-----------   93 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   93 (237)
                      ...++|+++|.+|+|||||+++|++..... ...++++.+.....+..++.  .+.+|||||...+...           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            346899999999999999999999876433 22344445555555556664  5789999996544322           


Q ss_pred             hHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHH-HH----cCCeEE
Q 026548           94 TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFA-ED----QGLFFS  168 (237)
Q Consensus        94 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~  168 (237)
                      ....++.+|++|+|+|++++.+..+.. ++..+..   .+.|++||+||+|+... ....+...+.. ..    .+++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceE
Confidence            124678999999999999877665542 3333333   47899999999998721 11122222222 22    247899


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHhhhcc------ccccCCCccCCCCCCCCCcccc
Q 026548          169 EASALNGDNVDTAFFRLLQEIYGAVSKK------ELECGNGKVDGPPMLAGSKIDV  218 (237)
Q Consensus       169 ~~Sa~~~~gi~~~~~~l~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  218 (237)
                      ++||++|.|++++|+++.+.+.....+.      ++........+||...|+.+++
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~  378 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEAVAAHPPPLVNGRRLKI  378 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCCCCCCCceeeE
Confidence            9999999999999999887654332211      1111222334566666666654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=1.3e-20  Score=165.11  Aligned_cols=155  Identities=24%  Similarity=0.224  Sum_probs=111.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch--------hchhhHh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER--------YRAVTSA   96 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~   96 (237)
                      ....+|+|+|.+|+|||||+|+|++..... ...++++.+.....+.+++.  .+.||||||.+.        +...+..
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~  113 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEV  113 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence            345799999999999999999999876543 33455556666666666664  577999999763        3334556


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCC
Q 026548           97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNG  175 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  175 (237)
                      +++.+|++|+|||+++..+... ..|...+..   .++|+++|+||+|+....   .+....+  ..+. .+++|||++|
T Consensus       114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g  184 (472)
T PRK03003        114 AMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHG  184 (472)
T ss_pred             HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCC
Confidence            7889999999999998655433 334444443   479999999999986421   1122222  2333 3579999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQEIYG  191 (237)
Q Consensus       176 ~gi~~~~~~l~~~i~~  191 (237)
                      .|++++|+++++.+.+
T Consensus       185 ~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        185 RGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCcHHHHHHHHhhccc
Confidence            9999999999988754

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.86  E-value=1.2e-20  Score=142.16  Aligned_cols=142  Identities=16%  Similarity=0.170  Sum_probs=100.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----hchhhHhhhcCCcEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----YRAVTSAYYRGALGAV  105 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~~~~d~~i  105 (237)
                      +|+++|.+|+|||||+|+|.+... . ...+       ..+.+...    .+|||||...    +.......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-c-Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            799999999999999999886531 1 1112       12222222    2799999622    2222223478999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC--eEEEEcCCCCCCHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL--FFSEASALNGDNVDTAFF  183 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~~~~  183 (237)
                      +|+|+++..++  +..|+..+    ..+.|+++++||+|+..   ...+...+++...+.  +++++||+++.|++++|+
T Consensus        70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            99999987654  22343332    13679999999999854   245667777777775  899999999999999999


Q ss_pred             HHHHHHHHhh
Q 026548          184 RLLQEIYGAV  193 (237)
Q Consensus       184 ~l~~~i~~~~  193 (237)
                      ++.+.+-+..
T Consensus       141 ~l~~~~~~~~  150 (158)
T PRK15467        141 YLASLTKQEE  150 (158)
T ss_pred             HHHHhchhhh
Confidence            9888775544

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=3.3e-20  Score=160.70  Aligned_cols=163  Identities=20%  Similarity=0.127  Sum_probs=115.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh----chh---hHhhhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY----RAV---TSAYYRG  100 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~  100 (237)
                      ...|+|+|.||||||||+++|.+........+.++.......+.+.+  ..+.|||+||....    ..+   ....+.+
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            46899999999999999999998765443335555555555566665  46889999995321    111   2234578


Q ss_pred             CcEEEEEEECCCh----hhHHHHHHHHHHHHHhc-----------CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC
Q 026548          101 ALGAVVVYDITKR----QSFDHVARWVEELRAHA-----------DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL  165 (237)
Q Consensus       101 ~d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~  165 (237)
                      +|++|+|+|+++.    +.+.++..|...+..+.           ..+.|++||+||+|+.+.... .+...+.....++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence            9999999999752    34555555555554432           146899999999998653322 2233334445678


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q 026548          166 FFSEASALNGDNVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       166 ~~~~~Sa~~~~gi~~~~~~l~~~i~~~~  193 (237)
                      +++++||+++.|+++++++|.+.+....
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            8999999999999999999988876543

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.86  E-value=3.7e-20  Score=144.13  Aligned_cols=165  Identities=17%  Similarity=0.160  Sum_probs=108.8

Q ss_pred             ccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc----------c
Q 026548           19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ----------E   88 (237)
Q Consensus        19 ~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~   88 (237)
                      .+.+...+..++|+++|.+|+|||||+++|++..+...+.++.+.+........+   ..+.||||||.          +
T Consensus        15 ~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~   91 (196)
T PRK00454         15 KLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKE   91 (196)
T ss_pred             cHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHH
Confidence            3444566678999999999999999999999876544444444443333333322   56889999994          3


Q ss_pred             hhchhhHhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHHHHHc
Q 026548           89 RYRAVTSAYYRG---ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEFAEDQ  163 (237)
Q Consensus        89 ~~~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~~~~~  163 (237)
                      .+..+...+++.   ++++++++|.+++.+.... .+...+..   .++|+++++||+|+.+..+.  ..+...+.....
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~  167 (196)
T PRK00454         92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG  167 (196)
T ss_pred             HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc
Confidence            344444555554   4678888998775433221 11122222   46899999999998653221  122233444444


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          164 GLFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       164 ~~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      ..+++++||+++.|++++++.|.+.+.
T Consensus       168 ~~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        168 DDEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            678999999999999999988876653

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.85  E-value=4.1e-20  Score=164.33  Aligned_cols=155  Identities=18%  Similarity=0.207  Sum_probs=114.7

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      ..+..+|+++|++++|||||+++|.+..+.....++.+.+.....+.+++. ..+.||||||++.|..++...+..+|++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            345679999999999999999999998877666566666655555665442 2678999999999999999899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC---------CeEEEEcCCCC
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG---------LFFSEASALNG  175 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~  175 (237)
                      |+|||+++....+....+ ....   ..++|++|++||+|+.+.   ..+...+.+...+         .+++++||++|
T Consensus       163 ILVVda~dgv~~qT~e~i-~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG  235 (587)
T TIGR00487       163 VLVVAADDGVMPQTIEAI-SHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG  235 (587)
T ss_pred             EEEEECCCCCCHhHHHHH-HHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence            999999873222222211 2222   247999999999998642   2344444433322         46999999999


Q ss_pred             CCHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQ  187 (237)
Q Consensus       176 ~gi~~~~~~l~~  187 (237)
                      .|++++|+++..
T Consensus       236 eGI~eLl~~I~~  247 (587)
T TIGR00487       236 DGIDELLDMILL  247 (587)
T ss_pred             CChHHHHHhhhh
Confidence            999999998864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04163 Era Era subfamily

Probab=99.85  E-value=8e-20  Score=137.77  Aligned_cols=156  Identities=21%  Similarity=0.155  Sum_probs=103.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hhHhhhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VTSAYYR   99 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~   99 (237)
                      ..+|+++|++|+|||||+++|.+...........+........ .....+.+.+|||||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            5689999999999999999999887654333222222211222 222235688999999654322        2344578


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCCH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNV  178 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  178 (237)
                      .+|++++|+|++++.+. ....+...+..   .+.|+++++||+|+........+....+....+ .+++++|++++.|+
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            99999999999986221 12223333333   268999999999987432222333344444443 67999999999999


Q ss_pred             HHHHHHHHHH
Q 026548          179 DTAFFRLLQE  188 (237)
Q Consensus       179 ~~~~~~l~~~  188 (237)
                      +++++.|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999988765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01895 EngA2 EngA2 subfamily

Probab=99.85  E-value=1.2e-19  Score=137.96  Aligned_cols=155  Identities=21%  Similarity=0.205  Sum_probs=104.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCC-CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-----------hhH
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFD-SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-----------VTS   95 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~~~   95 (237)
                      .++|+++|.+|+|||||+++|++...... ..+..+.......+..++.  .+.+|||||......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            57899999999999999999998764332 2233333444445555654  467999999643311           112


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH-HHHHc----CCeEEEE
Q 026548           96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE-FAEDQ----GLFFSEA  170 (237)
Q Consensus        96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~~  170 (237)
                      ..+..+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+........+...+ +....    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            356799999999999987665443 23333322   468999999999987543222222222 22333    3679999


Q ss_pred             cCCCCCCHHHHHHHHHHH
Q 026548          171 SALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       171 Sa~~~~gi~~~~~~l~~~  188 (237)
                      ||+++.|++++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999888753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=8.4e-20  Score=155.34  Aligned_cols=162  Identities=17%  Similarity=0.096  Sum_probs=116.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hhhHhhhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AVTSAYYRG  100 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~  100 (237)
                      ...|+|+|.||||||||+|+|++.+......+.++.......+...+. ..+.|+||||.....       ......+..
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            347999999999999999999987754444455555555555555432 357899999964321       112234788


Q ss_pred             CcEEEEEEECC---ChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--CeEEEEcCC
Q 026548          101 ALGAVVVYDIT---KRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--LFFSEASAL  173 (237)
Q Consensus       101 ~d~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  173 (237)
                      +|++++|+|++   +...++.+..|++.+..+..  .+.|++||+||+|+...... .+...++....+  .+++.+||+
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            99999999988   45566777788887776542  46899999999998653322 233444555444  468999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 026548          174 NGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i~~  191 (237)
                      ++.|++++++.|.+.+.+
T Consensus       317 tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CCcCHHHHHHHHHHHhhh
Confidence            999999999988877654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.84  E-value=6.5e-20  Score=140.99  Aligned_cols=150  Identities=18%  Similarity=0.215  Sum_probs=99.4

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc----------hhch
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE----------RYRA   92 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~   92 (237)
                      .+....++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++   .+.+|||||..          .+..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            3445678999999999999999999998864443334444333333343443   57899999942          2333


Q ss_pred             hhHhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--CCCHHHHHHHHHHcC--C
Q 026548           93 VTSAYYR---GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR--AVSAEDAVEFAEDQG--L  165 (237)
Q Consensus        93 ~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~--~~~~~~~~~~~~~~~--~  165 (237)
                      +...+++   .+|++++|+|++++.+.... .++..+..   .++|+++++||+|+....  ....+++++.....+  .
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~  165 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP  165 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence            4444554   45899999999875544443 22333332   478999999999986422  122344455555543  4


Q ss_pred             eEEEEcCCCCCCHH
Q 026548          166 FFSEASALNGDNVD  179 (237)
Q Consensus       166 ~~~~~Sa~~~~gi~  179 (237)
                      .++++||++|+|++
T Consensus       166 ~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       166 SVQLFSSLKKTGID  179 (179)
T ss_pred             ceEEEECCCCCCCC
Confidence            79999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.2e-20  Score=140.06  Aligned_cols=164  Identities=30%  Similarity=0.538  Sum_probs=144.5

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++++++|+.|.||||+++++..+.+...+.++.+.......+..+...+.+..|||+|++.+..+...++=.....|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            45899999999999999999999999999999999999998888777766789999999999999999998888888899


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      ++||++...++.++.+|.+.+...+ .++|+|+++||.|.....  .......+.++.++.|+++||+.+.+...-|-++
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L  164 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL  164 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence            9999999999999999999998888 479999999999975422  2334556677788999999999999999999999


Q ss_pred             HHHHHHh
Q 026548          186 LQEIYGA  192 (237)
Q Consensus       186 ~~~i~~~  192 (237)
                      ++++...
T Consensus       165 arKl~G~  171 (216)
T KOG0096|consen  165 ARKLTGD  171 (216)
T ss_pred             hhhhcCC
Confidence            9887543

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.84  E-value=1.1e-19  Score=162.19  Aligned_cols=154  Identities=17%  Similarity=0.180  Sum_probs=116.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC---CcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE---FFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      +.|+++|++++|||||+++|++..   +......+++.+.....+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999999743   3344556667777666677766  67889999999999888888899999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC--CHHHHHHHHHHc----CCeEEEEcCCCC
Q 026548          106 VVYDITK---RQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV--SAEDAVEFAEDQ----GLFFSEASALNG  175 (237)
Q Consensus       106 lv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~  175 (237)
                      +|+|+++   +++.+.+    ..+..   .++| ++|++||+|+.+....  ..+++.++....    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999998   4444333    22222   3677 9999999998653321  233455555554    478999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQEIYG  191 (237)
Q Consensus       176 ~gi~~~~~~l~~~i~~  191 (237)
                      .|+++++..|...+..
T Consensus       152 ~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       152 QGIGELKKELKNLLES  167 (581)
T ss_pred             CCchhHHHHHHHHHHh
Confidence            9999999887765543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK00089 era GTPase Era; Reviewed

Probab=99.84  E-value=1.3e-19  Score=149.70  Aligned_cols=157  Identities=21%  Similarity=0.182  Sum_probs=103.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc--------hhhHhhhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR--------AVTSAYYR   99 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~   99 (237)
                      .-.|+|+|.+|||||||+|+|++..+...+....+.......+...+ ..++.+|||||.....        ......+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~-~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED-DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC-CceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            35699999999999999999999887654432222222222222222 2678899999964432        22334578


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCCH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNV  178 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  178 (237)
                      .+|++++|+|+++..+. .....+..+..   .+.|+++|+||+|+........+....+....+ ..++++||+++.|+
T Consensus        84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv  159 (292)
T PRK00089         84 DVDLVLFVVDADEKIGP-GDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV  159 (292)
T ss_pred             cCCEEEEEEeCCCCCCh-hHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence            99999999999883221 12222233332   468999999999987432222333444444444 56999999999999


Q ss_pred             HHHHHHHHHHH
Q 026548          179 DTAFFRLLQEI  189 (237)
Q Consensus       179 ~~~~~~l~~~i  189 (237)
                      +++++++.+.+
T Consensus       160 ~~L~~~L~~~l  170 (292)
T PRK00089        160 DELLDVIAKYL  170 (292)
T ss_pred             HHHHHHHHHhC
Confidence            99998887765

>COG1159 Era GTPase [General function prediction only]

Probab=99.84  E-value=8.3e-20  Score=145.87  Aligned_cols=166  Identities=20%  Similarity=0.141  Sum_probs=111.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hhHhhhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VTSAYYR   99 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~   99 (237)
                      .--|+++|.||+|||||+|+|++.+....+....++......+...+ ..++.|+||||......        .....+.
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~   84 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSALK   84 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence            45799999999999999999999999887765554544555554444 46899999999443322        2334568


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCCH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNV  178 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  178 (237)
                      .+|+++||+|+++...- .....++.+..   .+.|+++++||+|.................... ..++++||++|.++
T Consensus        85 dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~  160 (298)
T COG1159          85 DVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNV  160 (298)
T ss_pred             cCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCH
Confidence            99999999999884432 22233344444   468999999999987644321222222222333 35999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccccCC
Q 026548          179 DTAFFRLLQEIYGAVSKKELECGN  202 (237)
Q Consensus       179 ~~~~~~l~~~i~~~~~~~~~~~~~  202 (237)
                      +.+.+.+.    +.++..++-.++
T Consensus       161 ~~L~~~i~----~~Lpeg~~~yp~  180 (298)
T COG1159         161 DTLLEIIK----EYLPEGPWYYPE  180 (298)
T ss_pred             HHHHHHHH----HhCCCCCCcCCh
Confidence            96665544    444444444443

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.83  E-value=1.4e-19  Score=163.32  Aligned_cols=158  Identities=18%  Similarity=0.188  Sum_probs=113.1

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEE--EEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQT--RTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ..+...|+|+|+.++|||||+++|....+.....++.+.+...  ..+..++....+.||||||++.|..++...+..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            3456799999999999999999999887765444444433322  23333344578999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHH-------HHcC--CeEEEEcCC
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFA-------EDQG--LFFSEASAL  173 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~  173 (237)
                      ++|+|||+++.........| ..+.   ..++|++|++||+|+...   ..+.+.+..       ..++  ++++++||+
T Consensus       321 iaILVVDA~dGv~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk  393 (742)
T CHL00189        321 IAILIIAADDGVKPQTIEAI-NYIQ---AANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISAS  393 (742)
T ss_pred             EEEEEEECcCCCChhhHHHH-HHHH---hcCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence            99999999874322222222 2222   257999999999998652   223332222       2233  679999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 026548          174 NGDNVDTAFFRLLQEI  189 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i  189 (237)
                      +|.|++++|++|....
T Consensus       394 tG~GIdeLle~I~~l~  409 (742)
T CHL00189        394 QGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCHHHHHHhhhhhh
Confidence            9999999999887653

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.83  E-value=8.1e-20  Score=143.19  Aligned_cols=155  Identities=21%  Similarity=0.225  Sum_probs=99.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcC---CCCCCcceeEEEEEEEE-------------------------C--C----
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFF---DSKSTIGVEFQTRTVTI-------------------------N--G----   74 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~-------------------------~--~----   74 (237)
                      ++|+++|+.|+|||||+.+|.+...+.   ......+.......+..                         .  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            479999999999999999997552111   11111111111111110                         0  1    


Q ss_pred             EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----QSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      ...++.||||||++.+...+...+..+|++++|+|++++    ++...+    ..+...  ...|++|++||+|+.....
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l----~~~~~~--~~~~iiivvNK~Dl~~~~~  154 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL----AALEIM--GLKHIIIVQNKIDLVKEEQ  154 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH----HHHHHc--CCCcEEEEEEchhccCHHH
Confidence            015688999999999888778888899999999999873    222222    222221  2247899999999864221


Q ss_pred             C--CHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          151 V--SAEDAVEFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       151 ~--~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      .  ..+...++....   +++++++||++|.|++++|++|.+.+
T Consensus       155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            1  122333433332   56799999999999999998887644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.83  E-value=2.7e-19  Score=162.75  Aligned_cols=154  Identities=20%  Similarity=0.231  Sum_probs=113.6

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      ..+...|+|+|+.++|||||+++|....+........+.+.....+.+++  ..+.||||||++.|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            45678999999999999999999998877655555555555555556665  4688999999999999999899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH-------HHHHcC--CeEEEEcCCCC
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE-------FAEDQG--LFFSEASALNG  175 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~  175 (237)
                      |+|||+++...-+....| ....   ..++|++|++||+|+.+.   ..+.+..       +...++  ++++++||++|
T Consensus       365 ILVVdAddGv~~qT~e~i-~~a~---~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG  437 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAI-NHAK---AAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG  437 (787)
T ss_pred             EEEEECCCCCCHhHHHHH-HHHH---hcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence            999999873222222222 2222   257999999999998642   1222222       122333  67999999999


Q ss_pred             CCHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQ  187 (237)
Q Consensus       176 ~gi~~~~~~l~~  187 (237)
                      .|++++|++|..
T Consensus       438 ~GI~eLle~I~~  449 (787)
T PRK05306        438 EGIDELLEAILL  449 (787)
T ss_pred             CCchHHHHhhhh
Confidence            999999998875

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.83  E-value=2e-19  Score=160.57  Aligned_cols=146  Identities=20%  Similarity=0.213  Sum_probs=111.5

Q ss_pred             cCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh------hHhhh--cCCcEEEE
Q 026548           35 GDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV------TSAYY--RGALGAVV  106 (237)
Q Consensus        35 G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~~il  106 (237)
                      |++|+|||||+|+|.+........++.+.+.....+..++.  ++.+|||||..++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999998865556677777777667777764  5789999998776543      33333  47899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |+|+++.+.   ...+..++.+   .++|+++++||+|+.+..... .+..++.+..+++++++||++|.|++++++++.
T Consensus        79 VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            999987432   2233333332   479999999999986554443 346778888999999999999999999999988


Q ss_pred             HHH
Q 026548          187 QEI  189 (237)
Q Consensus       187 ~~i  189 (237)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=3.4e-19  Score=126.13  Aligned_cols=155  Identities=24%  Similarity=0.460  Sum_probs=122.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      ..+|+++|-.++||||++..|+.... ....||+++.+  ..+++.+  +.+.+||.+|++..+.+|.+|+.+..++|||
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnv--etVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCC-cccccccceeE--EEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            46899999999999999999988773 44457766544  4444444  7899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-----LFFSEASALNGDNVDTA  181 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~  181 (237)
                      +|..+.+..+..+..+..+..... ...|++|.+||-|++.  ...++++..+.....     ..+..+++.+|+|+.+-
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg  169 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG  169 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence            999988666666655555444333 6799999999999987  456667776655332     34778999999999999


Q ss_pred             HHHHHHHH
Q 026548          182 FFRLLQEI  189 (237)
Q Consensus       182 ~~~l~~~i  189 (237)
                      |.+|...+
T Consensus       170 lswlsnn~  177 (180)
T KOG0071|consen  170 LSWLSNNL  177 (180)
T ss_pred             HHHHHhhc
Confidence            99988654

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.82  E-value=1.2e-19  Score=140.67  Aligned_cols=157  Identities=22%  Similarity=0.263  Sum_probs=107.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC------------------CCCCcceeEEEEEEE--ECCEEEEEEEEeCCC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD------------------SKSTIGVEFQTRTVT--INGKIIKAQIWDTAG   86 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~~~~l~Dt~G   86 (237)
                      +.++|+++|+.++|||||+++|........                  .....+.......+.  ..+  ..+.++||||
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~--~~i~~iDtPG   79 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN--RKITLIDTPG   79 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS--EEEEEEEESS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc--cceeeccccc
Confidence            367999999999999999999985442111                  112233333444444  444  5688999999


Q ss_pred             cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-CCCHHHHH-HHHHHc-
Q 026548           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR-AVSAEDAV-EFAEDQ-  163 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~-~~~~~~~~-~~~~~~-  163 (237)
                      +..|.......+..+|++|+|+|+.+...... ...+..+..   .++|++|++||+|+...+ ....++.. .+.+.. 
T Consensus        80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence            99998888888999999999999987543222 233333333   478999999999987321 11112222 333333 


Q ss_pred             -----CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          164 -----GLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       164 -----~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                           .++++++||.+|.|++++++.+.+.+
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence                 25799999999999999888887764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=5.2e-19  Score=153.92  Aligned_cols=146  Identities=24%  Similarity=0.208  Sum_probs=106.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch--------hchhhHhhhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER--------YRAVTSAYYR   99 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~   99 (237)
                      ++|+++|.+|+|||||+|+|.+..... ...+..+.+.....+.+++  ..+.+|||||.+.        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            489999999999999999999887532 2335555666666677777  6788999999876        2233455678


Q ss_pred             CCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCCCCC
Q 026548          100 GALGAVVVYDITKRQSFD--HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGD  176 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  176 (237)
                      .+|++|+|+|+.+..+..  .+..|+..      .+.|+++|+||+|+...    .+...++ ..+++. ++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998754332  23334332      37899999999996541    1223333 345654 8999999999


Q ss_pred             CHHHHHHHHHH
Q 026548          177 NVDTAFFRLLQ  187 (237)
Q Consensus       177 gi~~~~~~l~~  187 (237)
                      |++++|+.+.+
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999998877

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.82  E-value=5.6e-19  Score=153.50  Aligned_cols=150  Identities=22%  Similarity=0.198  Sum_probs=108.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCC-CCCCcceeEEEEEEEECCEEEEEEEEeCCCc--------chhchhhHhhhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFD-SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ--------ERYRAVTSAYYRG  100 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~~~  100 (237)
                      +|+++|.+|+|||||+|+|.+...... ..++.+.+.....+.+++.  .+.+|||||.        +.+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998775332 2355555666666666764  5889999996        3344455667899


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHH
Q 026548          101 ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVD  179 (237)
Q Consensus       101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  179 (237)
                      +|++++|+|+.+..+.... .+...+..   .+.|+++|+||+|+......    ..+ ...+++ +++++||.+|.|++
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence            9999999999875433321 22223333   36899999999998653321    222 335666 69999999999999


Q ss_pred             HHHHHHHHHHH
Q 026548          180 TAFFRLLQEIY  190 (237)
Q Consensus       180 ~~~~~l~~~i~  190 (237)
                      ++++++.+.+.
T Consensus       150 ~ll~~i~~~l~  160 (429)
T TIGR03594       150 DLLDAILELLP  160 (429)
T ss_pred             HHHHHHHHhcC
Confidence            99998887663

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=7.9e-19  Score=152.78  Aligned_cols=184  Identities=21%  Similarity=0.228  Sum_probs=118.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch----------h-h
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA----------V-T   94 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~-~   94 (237)
                      ..++|+++|.+|+|||||+|+|++..... ...++.+.+.....+..++  ..+.+|||||......          . .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            46999999999999999999999876432 3334444444444555565  3567999999543221          1 1


Q ss_pred             HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHH-HHHHH----cCCeEEE
Q 026548           95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAV-EFAED----QGLFFSE  169 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~~  169 (237)
                      ...++.+|++|+|+|++++.+..+. .+...+..   .+.|++|++||+|+.....  .++.. ++...    ..+++++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence            2467899999999999987665554 23333333   4689999999999864221  11221 22222    2478999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHHhhhcc------ccccCCCccCCCCCCCCCcccc
Q 026548          170 ASALNGDNVDTAFFRLLQEIYGAVSKK------ELECGNGKVDGPPMLAGSKIDV  218 (237)
Q Consensus       170 ~Sa~~~~gi~~~~~~l~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  218 (237)
                      +||+++.|++++|+.+.+.......+.      .+........+||...|+++++
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~  378 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEAVERHPPPLVKGRRLKI  378 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHHHcCCCCCCCCeeeeE
Confidence            999999999999988876544322111      1111122234466666666655

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=6e-19  Score=161.36  Aligned_cols=184  Identities=18%  Similarity=0.164  Sum_probs=122.2

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----------hchh-h
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----------YRAV-T   94 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-~   94 (237)
                      ..++|+++|.+|+|||||+|+|++..... ...++++.+.....+.+++..  +.||||||...          +..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            35899999999999999999999987532 333555566666666777754  56999999532          2221 1


Q ss_pred             HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH-HHHHc----CCeEEE
Q 026548           95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE-FAEDQ----GLFFSE  169 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~  169 (237)
                      ...++.+|++++|+|+++..+...+. ++..+..   .++|++||+||+|+.+...  .+.... +....    ..++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            23468999999999999987776654 3333333   4789999999999865221  122222 11121    346799


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHHhh---hc---cccccCCCccCCCCCCCCCcccc
Q 026548          170 ASALNGDNVDTAFFRLLQEIYGAV---SK---KELECGNGKVDGPPMLAGSKIDV  218 (237)
Q Consensus       170 ~Sa~~~~gi~~~~~~l~~~i~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~  218 (237)
                      +||++|.|++++|+.+.+.+....   +.   ..+........+||..+|+.+.+
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~~p~~~g~~~ki  655 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPHPLRGGKQPRI  655 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCCCCccCCeeeeE
Confidence            999999999999999888765421   11   12222222345566666666655

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.82  E-value=5.8e-19  Score=157.82  Aligned_cols=158  Identities=18%  Similarity=0.213  Sum_probs=112.0

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCC--CcC-----CCC------CCcceeEEEEE--EEE---CCEEEEEEEEeCCCcc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNE--FFF-----DSK------STIGVEFQTRT--VTI---NGKIIKAQIWDTAGQE   88 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~--~~~-----~~~------~~~~~~~~~~~--~~~---~~~~~~~~l~Dt~G~~   88 (237)
                      +..+|+++|+.++|||||+.+|+...  +..     ...      ...+.++....  +.+   ++..+.+.||||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            45689999999999999999997632  110     000      11122222222  222   4556889999999999


Q ss_pred             hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe--
Q 026548           89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF--  166 (237)
Q Consensus        89 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~--  166 (237)
                      .|...+..+++.+|++|+|+|+++....+....|.....    .++|+++|+||+|+....  ..+...++....++.  
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  159 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDAS  159 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcc
Confidence            999999999999999999999998655555555544322    378999999999986422  122233444445553  


Q ss_pred             -EEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          167 -FSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       167 -~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                       ++.+||++|.|+++++++|.+.+.
T Consensus       160 ~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        160 DAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhCc
Confidence             899999999999999999887654

>cd00880 Era_like Era (E

Probab=99.82  E-value=5.1e-19  Score=132.05  Aligned_cols=151  Identities=19%  Similarity=0.179  Sum_probs=103.5

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-------hhHhhhcCCcEE
Q 026548           33 VIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-------VTSAYYRGALGA  104 (237)
Q Consensus        33 v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~~  104 (237)
                      |+|++|+|||||+++|.+.... .......+............ ...+.+||+||......       ....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987655 23333333333333333331 35688999999766543       344578999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHH---HHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAE---DAVEFAEDQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      ++|+|+.+........ |......   .+.|+++++||+|+.........   .........+.+++++|+.++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999876665554 3333332   57999999999998753322111   011222334578999999999999999


Q ss_pred             HHHHHHH
Q 026548          182 FFRLLQE  188 (237)
Q Consensus       182 ~~~l~~~  188 (237)
                      +.++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9988764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.81  E-value=2.3e-18  Score=157.37  Aligned_cols=153  Identities=14%  Similarity=0.141  Sum_probs=112.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh----------hHhh
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV----------TSAY   97 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~   97 (237)
                      .++|+++|++|+|||||+|+|.+........+.++.+.....+..+  ..++.+|||||..++...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            4689999999999999999999877644444555555444444434  357889999997665321          2223


Q ss_pred             h--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548           98 Y--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG  175 (237)
Q Consensus        98 ~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  175 (237)
                      +  ..+|++++|+|+++.+.   ...|..++.+   .++|+++++||+|+.+.+.. ..+..++.+.++++++++|+.++
T Consensus        81 l~~~~aD~vI~VvDat~ler---~l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLER---NLYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchh---hHHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence            2  48899999999988543   2234445544   47999999999998754444 34567788889999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQEI  189 (237)
Q Consensus       176 ~gi~~~~~~l~~~i  189 (237)
                      .|++++++.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999988877653

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=3.5e-18  Score=126.97  Aligned_cols=157  Identities=24%  Similarity=0.384  Sum_probs=120.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC--------CCC--CcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhH
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFD--------SKS--TIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTS   95 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   95 (237)
                      -...||+|.|+.++|||||++.+........        +..  ..++........+++. ..+.|++||||++|.-+|.
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF~fm~~   86 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERFKFMWE   86 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHHHHHHH
Confidence            3467999999999999999999988764211        111  1223333333444432 4578999999999999999


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc--CCeEEEEcCC
Q 026548           96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ--GLFFSEASAL  173 (237)
Q Consensus        96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~  173 (237)
                      .++++++++|+++|.+.+..+ .....++.+....  .+|++|++||.|+..  ..+.+.+++.....  ..++++++|.
T Consensus        87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~a~  161 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEIDAT  161 (187)
T ss_pred             HHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeeecc
Confidence            999999999999999998887 4444555544432  299999999999987  56788888877765  7899999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 026548          174 NGDNVDTAFFRLLQE  188 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~  188 (237)
                      .++++.+.+..+..+
T Consensus       162 e~~~~~~~L~~ll~~  176 (187)
T COG2229         162 EGEGARDQLDVLLLK  176 (187)
T ss_pred             cchhHHHHHHHHHhh
Confidence            999999988777655

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.80  E-value=3.6e-18  Score=136.41  Aligned_cols=151  Identities=25%  Similarity=0.219  Sum_probs=104.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hhhHhhhcCCc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AVTSAYYRGAL  102 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d  102 (237)
                      +|+++|++|+|||||+++|.+........+..+.+.....+.+++  ..+++||+||.....       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            689999999999999999998764433334444555556666666  567899999965332       12345689999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------HHh-----------
Q 026548          103 GAVVVYDITKRQ-SFDHVARWVEEL-----------------------------------------RAH-----------  129 (237)
Q Consensus       103 ~~ilv~d~~~~~-s~~~~~~~~~~~-----------------------------------------~~~-----------  129 (237)
                      ++++|+|++++. ..+.+...+..+                                         .++           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998754 333332222110                                         000           


Q ss_pred             -------------cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          130 -------------ADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       130 -------------~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                                   ....+|+++|+||+|+..     .++...++..  ..++++||+++.|++++|+.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                         012478999999999853     3444455443  3589999999999999999887754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.80  E-value=1.8e-21  Score=144.01  Aligned_cols=171  Identities=32%  Similarity=0.611  Sum_probs=145.5

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCE-EEEEEEEeCCCcchhchhhHhhhcCC
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK-IIKAQIWDTAGQERYRAVTSAYYRGA  101 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~  101 (237)
                      ...++..++.|+|..|+|||+++.+++...+...|..+++.++..+....+.. .++++|||.+|++++..+..-+++.+
T Consensus        20 ~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea   99 (229)
T KOG4423|consen   20 KKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEA   99 (229)
T ss_pred             chhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCC
Confidence            34678899999999999999999999999999999999998887777666543 35788999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcC-CCHHHHHHHHHHcCCe-EEEEcCCCC
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVDMRA-VSAEDAVEFAEDQGLF-FSEASALNG  175 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~-~~~~~~~~~~~~~~~~-~~~~Sa~~~  175 (237)
                      ++.++|||+++..+|+...+|.+.+.....    ..+|+|+..||+|+..+-. .......++.+++|+. .+++|++.+
T Consensus       100 ~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ken  179 (229)
T KOG4423|consen  100 HGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKEN  179 (229)
T ss_pred             cceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccc
Confidence            999999999999999999999998765432    5688999999999865322 2246777888889875 999999999


Q ss_pred             CCHHHHHHHHHHHHHHhh
Q 026548          176 DNVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       176 ~gi~~~~~~l~~~i~~~~  193 (237)
                      .+++|+-..++++++-.-
T Consensus       180 kni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  180 KNIPEAQRELVEKILVND  197 (229)
T ss_pred             cChhHHHHHHHHHHHhhc
Confidence            999998888888776443

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.80  E-value=3.8e-18  Score=156.08  Aligned_cols=154  Identities=23%  Similarity=0.187  Sum_probs=107.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch--------hchhhHhh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER--------YRAVTSAY   97 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~   97 (237)
                      ...+|+++|.+|+|||||+|+|++..... ...++++.+........++  ..+.+|||||.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            35789999999999999999999876533 2235555555554555555  4578999999653        23334556


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 026548           98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGD  176 (237)
Q Consensus        98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  176 (237)
                      +..+|++|+|+|+++.....+ ..|...+..   .++|+++|+||+|+....    ....++. .++. ..+++||++|.
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~  422 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGR  422 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCC
Confidence            789999999999986422211 234444443   579999999999985421    1222222 2332 36799999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 026548          177 NVDTAFFRLLQEIYG  191 (237)
Q Consensus       177 gi~~~~~~l~~~i~~  191 (237)
                      |++++|++|++.+.+
T Consensus       423 GI~eLl~~i~~~l~~  437 (712)
T PRK09518        423 GVGDLLDEALDSLKV  437 (712)
T ss_pred             CchHHHHHHHHhccc
Confidence            999999999887744

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=1.8e-18  Score=145.47  Aligned_cols=148  Identities=22%  Similarity=0.172  Sum_probs=110.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc---------hhhHhhh
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR---------AVTSAYY   98 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~   98 (237)
                      ..|+++|.||+|||||+|+|++....... .|.++.+.......+.+..  +.++||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999999887654 4888888888888887754  7899999966432         2234467


Q ss_pred             cCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCC
Q 026548           99 RGALGAVVVYDITKRQSFD--HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNG  175 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  175 (237)
                      ..||++|||+|....-+-.  .+..|+.   .   .+.|+++|+||+|-..    ..+...+|. .+| ..++.+||.+|
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr---~---~~kpviLvvNK~D~~~----~e~~~~efy-slG~g~~~~ISA~Hg  150 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILR---R---SKKPVILVVNKIDNLK----AEELAYEFY-SLGFGEPVPISAEHG  150 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHH---h---cCCCEEEEEEcccCch----hhhhHHHHH-hcCCCCceEeehhhc
Confidence            8999999999998743322  2333333   2   4699999999999652    122233333 445 45899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQEI  189 (237)
Q Consensus       176 ~gi~~~~~~l~~~i  189 (237)
                      .|+.++++++++.+
T Consensus       151 ~Gi~dLld~v~~~l  164 (444)
T COG1160         151 RGIGDLLDAVLELL  164 (444)
T ss_pred             cCHHHHHHHHHhhc
Confidence            99999998888876

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.79  E-value=3e-18  Score=144.17  Aligned_cols=185  Identities=22%  Similarity=0.241  Sum_probs=127.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcch----------hchh-h
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----------YRAV-T   94 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-~   94 (237)
                      ..++|+++|.||+|||||+|+|++......+ .+.++.+.....+..++..  +.++||+|..+          |... .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence            5799999999999999999999998876544 3666777777778888864  56999999332          2221 2


Q ss_pred             HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-----cCCeEEE
Q 026548           95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-----QGLFFSE  169 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~  169 (237)
                      ...+..+|.+++|+|++.+-+-++. .....+..   .+.+++|++||+|+.+......++..+..+.     ..+++++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            3457899999999999987665553 22222333   5789999999999877544445554443332     2367999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHHhhhcc-------ccccCCCccCCCCCCCCCcccc
Q 026548          170 ASALNGDNVDTAFFRLLQEIYGAVSKK-------ELECGNGKVDGPPMLAGSKIDV  218 (237)
Q Consensus       170 ~Sa~~~~gi~~~~~~l~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  218 (237)
                      +||+++.++.++|+.+.+. ++.+..+       .+.......++||...|+.+++
T Consensus       331 iSA~~~~~i~~l~~~i~~~-~~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki  385 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEI-YECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKI  385 (444)
T ss_pred             EEecCCCChHHHHHHHHHH-HHHhccccCHHHHHHHHHHHHHhCCCCccCCceEEE
Confidence            9999999999999766554 4443322       2222333344344444777665

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.79  E-value=4.4e-18  Score=143.53  Aligned_cols=158  Identities=23%  Similarity=0.230  Sum_probs=117.4

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhh-------
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVT-------   94 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------   94 (237)
                      ......++|+++|.||+|||||+|+|.+......+ .+.++.++-...+.++|  +.+.|.||+|...-....       
T Consensus       212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeR  289 (454)
T COG0486         212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIER  289 (454)
T ss_pred             hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHH
Confidence            34445789999999999999999999999887654 48888888888888899  567799999966544332       


Q ss_pred             -HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCC
Q 026548           95 -SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASAL  173 (237)
Q Consensus        95 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  173 (237)
                       ...+..||.+++|+|.+.+.+-.+... +.    ....+.|+++|.||.|+........  .   ....+.+++.+|++
T Consensus       290 s~~~i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~~--~---~~~~~~~~i~iSa~  359 (454)
T COG0486         290 AKKAIEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELES--E---KLANGDAIISISAK  359 (454)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccch--h---hccCCCceEEEEec
Confidence             345789999999999998633222211 11    2225789999999999976443211  1   11233468999999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q 026548          174 NGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i~~~  192 (237)
                      ++.|++.+.+.|.+.+...
T Consensus       360 t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         360 TGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             CccCHHHHHHHHHHHHhhc
Confidence            9999999988888877666

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.79  E-value=4.7e-18  Score=151.02  Aligned_cols=155  Identities=20%  Similarity=0.173  Sum_probs=103.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcc----eeEEEEEEE------------ECCEEEEEEEEeCCCcchhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG----VEFQTRTVT------------INGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~----~~~~~~~~~------------~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      ..-|+++|++++|||||+++|.+..+......+.+    ..+......            +......+.||||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            34699999999999999999998876543322222    222111100            00001237899999999999


Q ss_pred             hhhHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC------------CHHHH
Q 026548           92 AVTSAYYRGALGAVVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV------------SAEDA  156 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~------------~~~~~  156 (237)
                      .++..+++.+|++++|||+++   +++++.+.    .+..   .++|+++++||+|+...+..            ..+.+
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            999999999999999999987   44444432    2222   47899999999998642210            00000


Q ss_pred             ------------HHHHH------------Hc--CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          157 ------------VEFAE------------DQ--GLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       157 ------------~~~~~------------~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                                  .++..            .+  .++++++||++|+|+++++.+|....
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                        11111            11  25799999999999999998876543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.79  E-value=4.9e-18  Score=133.05  Aligned_cols=117  Identities=21%  Similarity=0.339  Sum_probs=87.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC-cEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA-LGAVVVY  108 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~~ilv~  108 (237)
                      +|+++|++|||||||+++|....+...+.++ ............+..+.+.|||+||+..++..+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6999999999999999999998776554333 2222211111113346788999999999999888899998 9999999


Q ss_pred             ECCCh-hhHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCC
Q 026548          109 DITKR-QSFDHVARWVEELRAH---ADSSIRIILIGNKSDLVD  147 (237)
Q Consensus       109 d~~~~-~s~~~~~~~~~~~~~~---~~~~~p~vvv~nK~D~~~  147 (237)
                      |+.+. .++.....|+..+...   ...++|++|++||.|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99987 6677766655543322   125799999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.3e-18  Score=127.54  Aligned_cols=159  Identities=24%  Similarity=0.367  Sum_probs=120.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCC-------cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEF-------FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG  100 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~  100 (237)
                      ...|+++|..++|||||+.++.....       +..-.++++.......  +..  ..+.+||..|++..+++|..++..
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~--v~~--~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE--VCN--APLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee--ecc--ceeEEEEcCChHHHHHHHHHHHHH
Confidence            35799999999999999988754321       1122355555444333  333  468899999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHH---HHH---cCCeEEEEcCC
Q 026548          101 ALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEF---AED---QGLFFSEASAL  173 (237)
Q Consensus       101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~---~~~---~~~~~~~~Sa~  173 (237)
                      ++++|++||+++++-++.....+..+..... .++|+++.+||-|+.+.  ....++...   +..   ...++..|||.
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvSal  170 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVSAL  170 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccchhh
Confidence            9999999999998888887766666544443 78999999999998652  223333322   232   33679999999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q 026548          174 NGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i~~~  192 (237)
                      +|.||++..+|+++.+..+
T Consensus       171 ~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  171 TGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hcccHHHHHHHHHHHHhhc
Confidence            9999999999999988776

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.78  E-value=8.2e-18  Score=127.07  Aligned_cols=150  Identities=18%  Similarity=0.243  Sum_probs=99.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----------hchhhHhhhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----------YRAVTSAYYR   99 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~   99 (237)
                      .|+++|.+|+|||||++.|.+..+.....++.+.+.....+..++   .+.+|||||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999996655555545555544444444444   678999999432          3344444443


Q ss_pred             ---CCcEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHHHH--HcCCeEEEE
Q 026548          100 ---GALGAVVVYDITKRQS--FDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEFAE--DQGLFFSEA  170 (237)
Q Consensus       100 ---~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~  170 (237)
                         ..+++++++|.....+  ...+..|+..      .+.|+++++||+|+......  ..........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               4578899999876532  2223344333      25899999999998542211  1112222222  234579999


Q ss_pred             cCCCCCCHHHHHHHHHHH
Q 026548          171 SALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       171 Sa~~~~gi~~~~~~l~~~  188 (237)
                      |++++.++++++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999988765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.77  E-value=5.3e-18  Score=147.01  Aligned_cols=154  Identities=19%  Similarity=0.154  Sum_probs=103.2

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC--CCcC-----------------------------CCCCCcceeEEEEEEEECC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFFF-----------------------------DSKSTIGVEFQTRTVTING   74 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   74 (237)
                      ...++|+++|+.++|||||+.+|+..  ....                             ....+.+.+.....+..+ 
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~-   83 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD-   83 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC-
Confidence            34689999999999999999999752  1110                             112344444444444444 


Q ss_pred             EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcC---
Q 026548           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMRA---  150 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~---  150 (237)
                       .+.+.||||||++.|.......+..+|++|+|+|+++..+..... .+...+.... ...|++|++||+|+.....   
T Consensus        84 -~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 -KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             -CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHH
Confidence             467899999999988776666788999999999999874321111 1111122222 2357899999999864211   


Q ss_pred             -CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHH
Q 026548          151 -VSAEDAVEFAEDQG-----LFFSEASALNGDNVDTAF  182 (237)
Q Consensus       151 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~  182 (237)
                       ...+++.++++..+     ++++++||++|.|+.+.+
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence             11345556666665     569999999999998754

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.77  E-value=1.9e-17  Score=137.41  Aligned_cols=172  Identities=20%  Similarity=0.189  Sum_probs=128.4

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh---------chhh
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY---------RAVT   94 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~   94 (237)
                      .......|.++|..|+|||||+|+|++........-..+.+.+.+.+.+.+. ..+.+.||.|.-..         .+..
T Consensus       188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~AFksTL  266 (411)
T COG2262         188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVEAFKSTL  266 (411)
T ss_pred             cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHHHHHHHH
Confidence            3445679999999999999999999988776666666667777788878742 35779999994432         2222


Q ss_pred             HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCC
Q 026548           95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN  174 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  174 (237)
                       .....+|++++|+|++++.....+....+.+....-..+|+|+|.||+|+..+..     .........-..+.+||++
T Consensus       267 -EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~  340 (411)
T COG2262         267 -EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKT  340 (411)
T ss_pred             -HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEecc
Confidence             2347899999999999998888887777777777556799999999999765332     1122222221589999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhccccccCC
Q 026548          175 GDNVDTAFFRLLQEIYGAVSKKELECGN  202 (237)
Q Consensus       175 ~~gi~~~~~~l~~~i~~~~~~~~~~~~~  202 (237)
                      |.|++.+++.|.+.+...+.......+.
T Consensus       341 ~~gl~~L~~~i~~~l~~~~~~~~l~lp~  368 (411)
T COG2262         341 GEGLDLLRERIIELLSGLRTEVTLELPY  368 (411)
T ss_pred             CcCHHHHHHHHHHHhhhcccceEEEcCc
Confidence            9999999998888888777655544443

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.77  E-value=5.7e-18  Score=133.25  Aligned_cols=146  Identities=26%  Similarity=0.258  Sum_probs=94.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCC-------------------------------CCCCcceeEEEEEEEECCEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFD-------------------------------SKSTIGVEFQTRTVTINGKIIK   78 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   78 (237)
                      +|+|+|++|+|||||+++|+...-...                               .....+.+.....+..++  .+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            689999999999999999975332111                               012233333333343444  46


Q ss_pred             EEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC----CHH
Q 026548           79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV----SAE  154 (237)
Q Consensus        79 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~----~~~  154 (237)
                      +.||||||++.+.......++.+|++|+|+|+++...... ......+...  ...++++|+||+|+......    ...
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            7899999998887666677899999999999987532222 1222222221  12357789999998642211    122


Q ss_pred             HHHHHHHHcCC---eEEEEcCCCCCCHHH
Q 026548          155 DAVEFAEDQGL---FFSEASALNGDNVDT  180 (237)
Q Consensus       155 ~~~~~~~~~~~---~~~~~Sa~~~~gi~~  180 (237)
                      +..++....+.   +++.+||++|.|+.+
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            34455556663   489999999999885

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.77  E-value=6.3e-18  Score=146.53  Aligned_cols=153  Identities=20%  Similarity=0.192  Sum_probs=100.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-------------------------------CCCCCcceeEEEEEEEECC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF-------------------------------DSKSTIGVEFQTRTVTING   74 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   74 (237)
                      ...++|+++|++++|||||+++|+...-..                               ...+.++.+.....+..+ 
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~-   82 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD-   82 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-
Confidence            346899999999999999999998432110                               112334444444444444 


Q ss_pred             EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC---
Q 026548           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH-VARWVEELRAHADSSIRIILIGNKSDLVDMRA---  150 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~---  150 (237)
                       .+.+.||||||++.|.......+..+|++|+|+|+++...... ...++..+.. . ...|++|++||+|+.....   
T Consensus        83 -~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~-~~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         83 -KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-L-GINQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             -CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-c-CCCeEEEEEEccccccccHHHH
Confidence             4678999999998887655566789999999999987211211 1122222222 2 1246899999999864211   


Q ss_pred             -CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHH
Q 026548          151 -VSAEDAVEFAEDQG-----LFFSEASALNGDNVDTAF  182 (237)
Q Consensus       151 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~  182 (237)
                       ...+++.+++...+     ++++++||++|.|+++.+
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence             11234555555555     469999999999998754

>PRK10218 GTP-binding protein; Provisional

Probab=99.77  E-value=2.3e-17  Score=147.11  Aligned_cols=159  Identities=15%  Similarity=0.190  Sum_probs=110.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc--CCCcCCC------------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK--NEFFFDS------------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA   92 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   92 (237)
                      ...+|+++|+.++|||||+++|+.  +.+....            ....+.++..+...+....+.+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            356899999999999999999986  3322211            12344555555555555557899999999999999


Q ss_pred             hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC-CCHHHHHHHHH-------HcC
Q 026548           93 VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA-VSAEDAVEFAE-------DQG  164 (237)
Q Consensus        93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~-~~~~~~~~~~~-------~~~  164 (237)
                      .+..+++.+|++|+|+|+.+..... ...++..+..   .++|.+|++||+|+...+. ...+++.++..       ...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            9999999999999999998753222 2333333333   4789999999999864321 11233333332       234


Q ss_pred             CeEEEEcCCCCC----------CHHHHHHHHHHHH
Q 026548          165 LFFSEASALNGD----------NVDTAFFRLLQEI  189 (237)
Q Consensus       165 ~~~~~~Sa~~~~----------gi~~~~~~l~~~i  189 (237)
                      ++++.+||.+|.          ++..+|+.+++.+
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            679999999998          4777776665554

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.77  E-value=3.2e-17  Score=130.81  Aligned_cols=182  Identities=20%  Similarity=0.178  Sum_probs=120.2

Q ss_pred             hhhhcccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh---
Q 026548           14 HQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY---   90 (237)
Q Consensus        14 ~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---   90 (237)
                      ....+...+....+.++|+|+|.||+|||||.|.+++.++.+.+....+++.....+...+. .++.|+||||.-..   
T Consensus        58 pa~~esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-TQlvf~DTPGlvs~~~~  136 (379)
T KOG1423|consen   58 PAALESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-TQLVFYDTPGLVSKKMH  136 (379)
T ss_pred             cccccCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-eEEEEecCCcccccchh
Confidence            33445555567778999999999999999999999999998888766666666555555554 58999999992211   


Q ss_pred             ---------chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------
Q 026548           91 ---------RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR------------  149 (237)
Q Consensus        91 ---------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------  149 (237)
                               -......+..||.+++|+|+++....-. -..++.+..+.  .+|-++|+||.|.....            
T Consensus       137 r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~  213 (379)
T KOG1423|consen  137 RRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTN  213 (379)
T ss_pred             hhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccc
Confidence                     1112334678999999999996322111 23334455553  68999999999975421            


Q ss_pred             -CCC---HHHHHHHHHH---------cCC----eEEEEcCCCCCCHHHHHHHHHHHHHHhhhccccccCCC
Q 026548          150 -AVS---AEDAVEFAED---------QGL----FFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG  203 (237)
Q Consensus       150 -~~~---~~~~~~~~~~---------~~~----~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~~~~~  203 (237)
                       +++   .+...+|...         .|.    .+|.+||++|.||+++-++|    +.+.+..+|+....
T Consensus       214 g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyL----msqa~~gpW~y~a~  280 (379)
T KOG1423|consen  214 GELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYL----MSQAPPGPWKYPAD  280 (379)
T ss_pred             cccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHH----HhcCCCCCCCCCcc
Confidence             111   1111122111         111    28999999999999766555    45556666665443

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.76  E-value=3e-17  Score=146.35  Aligned_cols=156  Identities=19%  Similarity=0.217  Sum_probs=102.0

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE------CCEE-----E-----EEEEEeCCCcchh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI------NGKI-----I-----KAQIWDTAGQERY   90 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~-----~~~l~Dt~G~~~~   90 (237)
                      +...|+++|++++|||||+++|.+..+........+.+.....+..      .+..     +     .+.||||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            3457999999999999999999877654333222221111111111      0111     1     1679999999999


Q ss_pred             chhhHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC------------HHH
Q 026548           91 RAVTSAYYRGALGAVVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS------------AED  155 (237)
Q Consensus        91 ~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~------------~~~  155 (237)
                      ..++...+..+|++++|+|+++   ++++..+.    .+..   .++|+++++||+|+...+...            ...
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9988888999999999999987   55554443    2222   478999999999985322100            000


Q ss_pred             -----------HHHHHHHc---------------CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          156 -----------AVEFAEDQ---------------GLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       156 -----------~~~~~~~~---------------~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                                 ........               .++++++||.+|.|+++++..+....
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                       11111111               25689999999999999998876543

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.76  E-value=1.4e-17  Score=148.60  Aligned_cols=158  Identities=15%  Similarity=0.204  Sum_probs=109.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC--CCcCCC------------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhh
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN--EFFFDS------------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVT   94 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   94 (237)
                      .+|+++|+.++|||||+++|+..  .+....            ....+.+...+...+....+++.||||||+..|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            37999999999999999999863  221111            0112233333333333334788999999999999999


Q ss_pred             HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC-CCHHHHHHHHH-------HcCCe
Q 026548           95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA-VSAEDAVEFAE-------DQGLF  166 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  166 (237)
                      ...++.+|++++|+|+.+.. ......|+..+..   .++|++|++||+|+...+. ...++..++..       ...++
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            99999999999999998742 2334556565554   4789999999999865321 11233333332       23568


Q ss_pred             EEEEcCCCCC----------CHHHHHHHHHHHHH
Q 026548          167 FSEASALNGD----------NVDTAFFRLLQEIY  190 (237)
Q Consensus       167 ~~~~Sa~~~~----------gi~~~~~~l~~~i~  190 (237)
                      ++.+||++|.          |+..+|+.+++.+.
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            9999999996          78888887776653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.75  E-value=5.4e-17  Score=129.86  Aligned_cols=112  Identities=16%  Similarity=0.144  Sum_probs=79.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCC------------------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFD------------------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      +|+++|++|+|||||+++|+...-...                  .....+.......+..++  .++.+|||||+..|.
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence            589999999999999999975421100                  001112222223333344  678999999999998


Q ss_pred             hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      ..+..+++.+|++++|+|+.+.... ....++..+..   .++|+++++||+|+..
T Consensus        79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~  130 (237)
T cd04168          79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence            8888999999999999999886432 33455555544   4789999999999863

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.75  E-value=4.1e-17  Score=146.21  Aligned_cols=152  Identities=18%  Similarity=0.163  Sum_probs=106.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC---CcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE---FFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      -|+++|+.++|||||+++|.+..   +.......++.+.....+...+. ..+.||||||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            48899999999999999999643   33333345555554444433322 347899999999997777777899999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC--CHHHHHHHHHHcC---CeEEEEcCCCCCC
Q 026548          107 VYDITK---RQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV--SAEDAVEFAEDQG---LFFSEASALNGDN  177 (237)
Q Consensus       107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~g  177 (237)
                      |+|+++   +++.+.+    ..+..   .++| ++||+||+|+.+....  ..+++.++....+   .+++++||++|.|
T Consensus        81 VVda~eg~~~qT~ehl----~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         81 VVACDDGVMAQTREHL----AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            999987   3333332    22222   2456 5799999998653211  1234555555444   6799999999999


Q ss_pred             HHHHHHHHHHHH
Q 026548          178 VDTAFFRLLQEI  189 (237)
Q Consensus       178 i~~~~~~l~~~i  189 (237)
                      ++++++.|....
T Consensus       154 I~~L~~~L~~~~  165 (614)
T PRK10512        154 IDALREHLLQLP  165 (614)
T ss_pred             CHHHHHHHHHhh
Confidence            999998887654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.75  E-value=3e-17  Score=119.33  Aligned_cols=135  Identities=21%  Similarity=0.244  Sum_probs=99.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC----cchhchhhHhhhcCCcEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG----QERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~~i  105 (237)
                      ||+++|+.|||||||+++|.+...  .+..|....       +.+     .++||||    +..+..........+|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~-------~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE-------YYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE-------ecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999998764  222232222       122     2689999    4455666666678999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAFFR  184 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~  184 (237)
                      ++.|++++.+.-.     ..+...  .+.|+|-|+||+|+... ..+.+.++++.+..|+. +|++|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999998643211     112222  35899999999999732 34677888888888875 899999999999999887


Q ss_pred             HH
Q 026548          185 LL  186 (237)
Q Consensus       185 l~  186 (237)
                      |-
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            64

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.75  E-value=7.4e-17  Score=125.34  Aligned_cols=146  Identities=21%  Similarity=0.153  Sum_probs=96.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCc----------------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFF----------------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      .++|+++|+.++|||||+++|+.....                .......+.+  .....+.....++.|+||||+..+.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITIN--TAHVEYETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEE--eeeeEecCCCeEEEEEECcCHHHHH
Confidence            478999999999999999999753100                0011222333  3333333334578899999999888


Q ss_pred             hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC---CHHHHHHHHHHcC---
Q 026548           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV---SAEDAVEFAEDQG---  164 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~---  164 (237)
                      ......+..+|++++|+|+...-... ....+..+..   .++| +++++||+|+..+.+.   ..+++.++....+   
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            77777889999999999998743222 2223333333   3566 7789999998532221   1223445554443   


Q ss_pred             --CeEEEEcCCCCCCHH
Q 026548          165 --LFFSEASALNGDNVD  179 (237)
Q Consensus       165 --~~~~~~Sa~~~~gi~  179 (237)
                        ++++++||.+|.++.
T Consensus       156 ~~v~iipiSa~~g~n~~  172 (195)
T cd01884         156 DNTPIVRGSALKALEGD  172 (195)
T ss_pred             cCCeEEEeeCccccCCC
Confidence              679999999998853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.75  E-value=2.3e-17  Score=141.97  Aligned_cols=161  Identities=19%  Similarity=0.165  Sum_probs=103.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcC---CCCCCcceeEEEEE--------------EEE----CC------EEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF---DSKSTIGVEFQTRT--------------VTI----NG------KIIKA   79 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~--------------~~~----~~------~~~~~   79 (237)
                      ..++|+++|++++|||||+++|.+...+.   ......+.......              ++.    ++      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            46899999999999999999997542211   11111111111000              001    11      13568


Q ss_pred             EEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHH
Q 026548           80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAV  157 (237)
Q Consensus        80 ~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~  157 (237)
                      .+||+||++.|...+...+..+|++++|+|+++..........+..+...  ...|++|++||+|+......  ..+++.
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i~  160 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEIK  160 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHHH
Confidence            89999999999888888888999999999998643111122222222221  12468999999998653211  123344


Q ss_pred             HHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          158 EFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       158 ~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      ++....   +++++++||++|.|+++++++|...+
T Consensus       161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            444433   57899999999999999998888754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.74  E-value=3.4e-17  Score=140.91  Aligned_cols=163  Identities=20%  Similarity=0.191  Sum_probs=102.4

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCc---CCCCCCcceeEEEEEEE------------------EC--C----EE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFF---FDSKSTIGVEFQTRTVT------------------IN--G----KI   76 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~------------------~~--~----~~   76 (237)
                      .....++|+++|+.++|||||+.+|.+.-.+   .......+.........                  ++  +    ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            3445689999999999999999999653211   11112222221110000                  01  1    02


Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SA  153 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~  153 (237)
                      ..+.||||||++.|..........+|++++|+|++++. ....... +..+...  ...|+++|+||+|+......  ..
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDII--GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence            47899999999988776666667789999999999642 1111111 1222221  12468999999998653221  12


Q ss_pred             HHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          154 EDAVEFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       154 ~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      +++.+++...   +.+++++||+++.|++++++.|...+
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            3344444332   47899999999999999998887765

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=1.4e-16  Score=121.00  Aligned_cols=161  Identities=18%  Similarity=0.208  Sum_probs=111.9

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC----------cchhch
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG----------QERYRA   92 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~   92 (237)
                      .+.+...-|+++|.+|+|||||||+|++++-......+.|.+.....+.+++.   +.++|.||          .+.+..
T Consensus        19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence            44456778999999999999999999998754545566667777777777764   67999999          445556


Q ss_pred             hhHhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc----CC
Q 026548           93 VTSAYYR---GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ----GL  165 (237)
Q Consensus        93 ~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~----~~  165 (237)
                      +...|+.   +..++++++|+..+..-.+. ..++.+..   .++|++|++||+|.....+... .....+...    ..
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k-~l~~v~~~l~~~~~~  170 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNK-QLNKVAEELKKPPPD  170 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHH-HHHHHHHHhcCCCCc
Confidence            6666664   45778999999885443222 22333333   5899999999999876433321 122223222    22


Q ss_pred             e--EEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548          166 F--FSEASALNGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       166 ~--~~~~Sa~~~~gi~~~~~~l~~~i~~  191 (237)
                      .  ++.+|+.++.|++++...|.+.+.+
T Consensus       171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         171 DQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             cceEEEEecccccCHHHHHHHHHHHhhc
Confidence            2  7788999999999988888776543

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.74  E-value=2.6e-17  Score=116.78  Aligned_cols=153  Identities=23%  Similarity=0.372  Sum_probs=115.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      .+.+||+++|-.++|||||+..|.+... ..-.+|.++  ..+.+..++ .+.+.+||.+|+...+..|..|+.+.|++|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GF--n~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGF--NTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCc--ceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence            5679999999999999999999887653 223355554  344454554 478999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--------CeEEEEcCCCCC
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--------LFFSEASALNGD  176 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~  176 (237)
                      ||+|.++..-|+.+...+-++....+ ..+|++|..||-|+.-  ...   +.+++.+.+        ..+-+|||.+++
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt--aa~---~eeia~klnl~~lrdRswhIq~csals~e  165 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT--AAK---VEEIALKLNLAGLRDRSWHIQECSALSLE  165 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh--hcc---hHHHHHhcchhhhhhceEEeeeCcccccc
Confidence            99999998888887665555544443 7899999999999754  222   222333222        236779999999


Q ss_pred             CHHHHHHHHHH
Q 026548          177 NVDTAFFRLLQ  187 (237)
Q Consensus       177 gi~~~~~~l~~  187 (237)
                      |+.+-.+|+..
T Consensus       166 g~~dg~~wv~s  176 (185)
T KOG0074|consen  166 GSTDGSDWVQS  176 (185)
T ss_pred             CccCcchhhhc
Confidence            98887777654

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.74  E-value=1.1e-17  Score=143.39  Aligned_cols=164  Identities=24%  Similarity=0.299  Sum_probs=124.1

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...+||+|+|+.|+||||||-+|....+.+...+-...-..+..++-+.  +.+.|+|++.....+......++.||+++
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcCEEE
Confidence            3478999999999999999999999998776543322111112222223  45789999877666666778899999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHH-HHHHHHHcC-Ce-EEEEcCCCCCCHH
Q 026548          106 VVYDITKRQSFDHV-ARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAED-AVEFAEDQG-LF-FSEASALNGDNVD  179 (237)
Q Consensus       106 lv~d~~~~~s~~~~-~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~-~~~~~~~~~-~~-~~~~Sa~~~~gi~  179 (237)
                      ++|+++++.+++.+ .+|+..++...+  .++|+|+|+||.|.......+.+. ...+...+. +. .++|||++-.++.
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~  164 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS  164 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence            99999999999998 679999988775  689999999999987644443343 444444443 32 7899999999999


Q ss_pred             HHHHHHHHHHHH
Q 026548          180 TAFFRLLQEIYG  191 (237)
Q Consensus       180 ~~~~~l~~~i~~  191 (237)
                      ++|+...+.+..
T Consensus       165 e~fYyaqKaVih  176 (625)
T KOG1707|consen  165 ELFYYAQKAVIH  176 (625)
T ss_pred             hhhhhhhheeec
Confidence            999887776543

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=2.6e-16  Score=127.13  Aligned_cols=165  Identities=19%  Similarity=0.161  Sum_probs=119.9

Q ss_pred             CCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc---------chhc
Q 026548           21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ---------ERYR   91 (237)
Q Consensus        21 ~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~   91 (237)
                      .+........|+|.|.||+|||||++.+.+.+......|.++.......+..++  .+++++||||.         +...
T Consensus       161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~  238 (346)
T COG1084         161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIER  238 (346)
T ss_pred             CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHH
Confidence            344555688999999999999999999999887766667776666666666555  56889999991         1122


Q ss_pred             hhhHhhhcCCcEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEE
Q 026548           92 AVTSAYYRGALGAVVVYDITK--RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFS  168 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~  168 (237)
                      .....+-+-.++++|+||.+.  ..+.+....+++.+....  +.|+++|+||+|....+  ..+++.......+. ...
T Consensus       239 qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e--~~~~~~~~~~~~~~~~~~  314 (346)
T COG1084         239 QAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEE--KLEEIEASVLEEGGEEPL  314 (346)
T ss_pred             HHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchh--HHHHHHHHHHhhcccccc
Confidence            233344456788999999986  567788888888888886  38999999999987532  23344444444443 377


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHH
Q 026548          169 EASALNGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       169 ~~Sa~~~~gi~~~~~~l~~~i~~  191 (237)
                      .+++..+.+++.+-..+.....+
T Consensus       315 ~~~~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         315 KISATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             ceeeeehhhHHHHHHHHHHHhhc
Confidence            88888898888777666665433

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=9.9e-18  Score=119.25  Aligned_cols=158  Identities=23%  Similarity=0.356  Sum_probs=115.2

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ...+|+++|-.|+||||++-++.-.+... ..|++++....  +  ..+..++++||..|+-..+..|+.|+.+.|++|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve~--v--~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVET--V--PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCccc--c--ccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            56789999999999999998877666433 34666655433  2  2355789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCcCCCHHHHH-----HHHHHcCCeEEEEcCCCCCCHHH
Q 026548          107 VYDITKRQSFDHVARWVEEL-RAHADSSIRIILIGNKSDLVDMRAVSAEDAV-----EFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                      |+|.+|.+-.......+..+ .+....+..++|++||.|.....  ...++.     +-.+..-+.++++||.+|.|+++
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~  169 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP  169 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence            99999976554443333333 22222457788999999986522  222221     22223336699999999999999


Q ss_pred             HHHHHHHHHHH
Q 026548          181 AFFRLLQEIYG  191 (237)
Q Consensus       181 ~~~~l~~~i~~  191 (237)
                      +++||.+.+-.
T Consensus       170 ~~DWL~~~l~~  180 (182)
T KOG0072|consen  170 AMDWLQRPLKS  180 (182)
T ss_pred             HHHHHHHHHhc
Confidence            99999987654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.72  E-value=6e-17  Score=128.39  Aligned_cols=146  Identities=21%  Similarity=0.170  Sum_probs=92.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCc-------------------------------CCCCCCcceeEEEEEEEECCEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFF-------------------------------FDSKSTIGVEFQTRTVTINGKIIK   78 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   78 (237)
                      +|+++|++++|||||+.+|+...-.                               .......+.+.....+...+  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            5899999999999999998632100                               00112233333344444444  67


Q ss_pred             EEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhh------HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC--cC
Q 026548           79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS------FDHVARWVEELRAHADSSIRIILIGNKSDLVDM--RA  150 (237)
Q Consensus        79 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~--~~  150 (237)
                      +.+|||||+..+...+...++.+|++|+|+|+++...      .......+......  ...|++|++||+|+...  ..
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccH
Confidence            8899999998887777777889999999999987421      11111222222221  23689999999998731  11


Q ss_pred             CC----HHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 026548          151 VS----AEDAVEFAEDQG-----LFFSEASALNGDNVD  179 (237)
Q Consensus       151 ~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~  179 (237)
                      ..    .+++.++....+     ++++++||++|.|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            11    122223344443     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04167 Snu114p Snu114p subfamily

Probab=99.72  E-value=8e-17  Score=127.19  Aligned_cols=113  Identities=21%  Similarity=0.335  Sum_probs=79.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCC-----------------CCCcceeEEEEEEE--E---CCEEEEEEEEeCCCc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDS-----------------KSTIGVEFQTRTVT--I---NGKIIKAQIWDTAGQ   87 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~l~Dt~G~   87 (237)
                      +|+|+|+.++|||||+++|+........                 ....+.......+.  .   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6999999999999999999875433210                 00111122112221  1   345678999999999


Q ss_pred             chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV  146 (237)
Q Consensus        88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~  146 (237)
                      ..+......++..+|++|+|+|+.+..+... ..|+.....   .++|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9998888888999999999999987655432 334444332   358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.72  E-value=1.4e-16  Score=127.88  Aligned_cols=157  Identities=16%  Similarity=0.178  Sum_probs=116.9

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhh-------Hhhhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVT-------SAYYR   99 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~   99 (237)
                      ....|.++|-||+|||||+++|...+......+.++.......+..++. .++.+-|.||..+-..+.       -..+.
T Consensus       195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiE  273 (366)
T KOG1489|consen  195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIE  273 (366)
T ss_pred             eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHH
Confidence            3457899999999999999999988865555566666666565555543 348899999955443322       23457


Q ss_pred             CCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCC
Q 026548          100 GALGAVVVYDITKR---QSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASAL  173 (237)
Q Consensus       100 ~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~  173 (237)
                      +++.++||+|++..   ..|+.+..+..++..+.+  .+.|.+||+||+|+++..   .+...++++.+.-+ ++++||+
T Consensus       274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~  350 (366)
T KOG1489|consen  274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAK  350 (366)
T ss_pred             hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeec
Confidence            89999999999997   788888777777655544  678999999999985311   22246677777655 9999999


Q ss_pred             CCCCHHHHHHHHHH
Q 026548          174 NGDNVDTAFFRLLQ  187 (237)
Q Consensus       174 ~~~gi~~~~~~l~~  187 (237)
                      .++|+.+++..|.+
T Consensus       351 ~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  351 SGEGLEELLNGLRE  364 (366)
T ss_pred             cccchHHHHHHHhh
Confidence            99999998877654

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.71  E-value=3.1e-16  Score=137.66  Aligned_cols=153  Identities=18%  Similarity=0.185  Sum_probs=117.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch------hchhhHhh-h-c
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER------YRAVTSAY-Y-R   99 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~~~~-~-~   99 (237)
                      .++|+++|+||+|||||+|+|++........|.++.+.....+...+..  +++.|.||--.      .....+++ + .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            3469999999999999999999999888888998888888788777754  77999999222      12223333 3 4


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      ..|++|-|+|+++.+-.   -+.-.++.+   -+.|++++.|++|...++.+.. +..++.+.+|+|+++++|++|.|++
T Consensus        81 ~~D~ivnVvDAtnLeRn---LyltlQLlE---~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNLERN---LYLTLQLLE---LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchHHHH---HHHHHHHHH---cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCHH
Confidence            66999999999885422   122233333   4799999999999876554433 4667888999999999999999999


Q ss_pred             HHHHHHHHHH
Q 026548          180 TAFFRLLQEI  189 (237)
Q Consensus       180 ~~~~~l~~~i  189 (237)
                      ++...+.+..
T Consensus       154 ~l~~~i~~~~  163 (653)
T COG0370         154 ELKRAIIELA  163 (653)
T ss_pred             HHHHHHHHhc
Confidence            9888877643

>PRK12736 elongation factor Tu; Reviewed

Probab=99.70  E-value=4.7e-16  Score=133.40  Aligned_cols=144  Identities=18%  Similarity=0.129  Sum_probs=94.1

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCc----------------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFF----------------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY   90 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   90 (237)
                      ..++|+++|+.++|||||+++|++....                .......+.+.  ....+.....++.|+||||++.|
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHHH
Confidence            3689999999999999999999863110                00122333333  33334333356789999999988


Q ss_pred             chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCCC---HHHHHHHHHHcC--
Q 026548           91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAVS---AEDAVEFAEDQG--  164 (237)
Q Consensus        91 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~---~~~~~~~~~~~~--  164 (237)
                      .......+..+|++++|+|++....... ..++..+..   .++| ++|++||+|+..+.+..   .+++.++....+  
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  164 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence            7766667789999999999987422222 222233333   3677 67889999986432221   224455555554  


Q ss_pred             ---CeEEEEcCCCCC
Q 026548          165 ---LFFSEASALNGD  176 (237)
Q Consensus       165 ---~~~~~~Sa~~~~  176 (237)
                         ++++++||.+|.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T PRK12736        165 GDDIPVIRGSALKAL  179 (394)
T ss_pred             cCCccEEEeeccccc
Confidence               579999999983

>PRK12735 elongation factor Tu; Reviewed

Probab=99.69  E-value=7.7e-16  Score=132.14  Aligned_cols=145  Identities=19%  Similarity=0.120  Sum_probs=94.0

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC-------CCc---------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN-------EFF---------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER   89 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   89 (237)
                      .+.++|+++|++++|||||+++|++.       .+.         .......+.+.  ....+.....++.|+||||++.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHH
Confidence            34689999999999999999999862       100         00112333333  3333333335678999999998


Q ss_pred             hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcCC---CHHHHHHHHHHcC-
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRII-LIGNKSDLVDMRAV---SAEDAVEFAEDQG-  164 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~~~~~---~~~~~~~~~~~~~-  164 (237)
                      |.......+..+|++++|+|+.+..... ...++..+..   .++|.+ +++||+|+..+.+.   ..+++.++...++ 
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~  163 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence            8777777788999999999998743222 2223333332   367865 57999998642221   1224445555543 


Q ss_pred             ----CeEEEEcCCCCC
Q 026548          165 ----LFFSEASALNGD  176 (237)
Q Consensus       165 ----~~~~~~Sa~~~~  176 (237)
                          ++++++||.++.
T Consensus       164 ~~~~~~ii~~Sa~~g~  179 (396)
T PRK12735        164 PGDDTPIIRGSALKAL  179 (396)
T ss_pred             CcCceeEEecchhccc
Confidence                679999999985

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.69  E-value=2.3e-16  Score=124.81  Aligned_cols=165  Identities=19%  Similarity=0.284  Sum_probs=104.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-----hhHhhhcCCcE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-----VTSAYYRGALG  103 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~d~  103 (237)
                      ||+++|+.+|||||+.+.+..+..+.... -..+.+.....+...+. +.+.+||+||+..+..     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            79999999999999999988876543332 11223333334433432 5789999999876544     35677899999


Q ss_pred             EEEEEECCChhhHHHHH---HHHHHHHHhcCCCCcEEEEEeCCCCCCCc--CC----CHHHHHHHHHHcC---CeEEEEc
Q 026548          104 AVVVYDITKRQSFDHVA---RWVEELRAHADSSIRIILIGNKSDLVDMR--AV----SAEDAVEFAEDQG---LFFSEAS  171 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~---~~~~~~~~~~~~~~p~vvv~nK~D~~~~~--~~----~~~~~~~~~~~~~---~~~~~~S  171 (237)
                      +|||+|+.+.+..+.+.   ..+..+.... +++.+.|+++|+|+..+.  ..    ..+.+.+.+...+   +.++.||
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            99999999544444444   4444444544 689999999999986421  11    1222333444455   6788899


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccc
Q 026548          172 ALNGDNVDTAFFRLLQEIYGAVSKKE  197 (237)
Q Consensus       172 a~~~~gi~~~~~~l~~~i~~~~~~~~  197 (237)
                      ..+ ..+-++|..+++.+..+.+.-+
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~~le  183 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLSTLE  183 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHCCCC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHHHHH
Confidence            777 6899999999888877766543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=1.4e-15  Score=130.16  Aligned_cols=150  Identities=20%  Similarity=0.271  Sum_probs=118.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECC-EEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-KIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      .+=|.++|+..-|||||+..+...+........++.+..-..+..+- ....+.|+|||||+.|..+..+-..-+|.+||
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL   84 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL   84 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence            44589999999999999999999998888778888777777777751 12358899999999999999999999999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC---------CeEEEEcCCC
Q 026548          107 VYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG---------LFFSEASALN  174 (237)
Q Consensus       107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~  174 (237)
                      |+++++   +++.+.+    +..+.   .++|++|++||+|.++   .+++....-..++|         ..++.+||++
T Consensus        85 VVa~dDGv~pQTiEAI----~hak~---a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~t  154 (509)
T COG0532          85 VVAADDGVMPQTIEAI----NHAKA---AGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKT  154 (509)
T ss_pred             EEEccCCcchhHHHHH----HHHHH---CCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence            999998   5555444    22222   5899999999999874   33444444333333         3589999999


Q ss_pred             CCCHHHHHHHHHH
Q 026548          175 GDNVDTAFFRLLQ  187 (237)
Q Consensus       175 ~~gi~~~~~~l~~  187 (237)
                      |.|+++++..+.-
T Consensus       155 g~Gi~eLL~~ill  167 (509)
T COG0532         155 GEGIDELLELILL  167 (509)
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999976544

>cd04169 RF3 RF3 subfamily

Probab=99.68  E-value=1.5e-15  Score=123.51  Aligned_cols=115  Identities=19%  Similarity=0.178  Sum_probs=78.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCC---------C-----------CcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSK---------S-----------TIGVEFQTRTVTINGKIIKAQIWDTAGQE   88 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   88 (237)
                      .+|+|+|++|+|||||+++|+...-.....         .           ..+.........+....+++.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            479999999999999999997532110000         0           01122223333333344788999999999


Q ss_pred             hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        89 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      .|.......++.+|++|+|+|+++.... ....++.....   .++|+++++||+|+..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            9888777788999999999999875322 22334433322   4789999999999865

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.68  E-value=1.3e-15  Score=120.74  Aligned_cols=151  Identities=19%  Similarity=0.172  Sum_probs=94.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCC-----------------------cceeEEE---------------EEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKST-----------------------IGVEFQT---------------RTVT   71 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~---------------~~~~   71 (237)
                      ||+++|+.++|||||+++|..+.+.......                       .+.+...               ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999999976554321100                       0000000               0011


Q ss_pred             ECCEEEEEEEEeCCCcchhchhhHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548           72 INGKIIKAQIWDTAGQERYRAVTSAYYR--GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR  149 (237)
Q Consensus        72 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~  149 (237)
                      ..  ...+.++||||++.|.......+.  .+|++++|+|+.....- ....++..+..   .++|+++++||+|+....
T Consensus        81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA---LNIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEECccccCHH
Confidence            11  246889999999988765544443  78999999998875432 22333333333   468999999999985422


Q ss_pred             CC--CHHHHHHHHHH--------------------------cCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          150 AV--SAEDAVEFAED--------------------------QGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       150 ~~--~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ..  ..++..++...                          ..+++|.+|+.+|.|+++++..|.
T Consensus       155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            11  12222222221                          124799999999999998886653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.68  E-value=1.1e-15  Score=131.17  Aligned_cols=145  Identities=17%  Similarity=0.105  Sum_probs=95.2

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCC----------------cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEF----------------FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER   89 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   89 (237)
                      .+.++|+++|+.++|||||+++|++...                ........+.+.  ..+.+.....++.||||||++.
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchHH
Confidence            4468999999999999999999974210                001113333333  3344443445788999999999


Q ss_pred             hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcCCC---HHHHHHHHHHcC-
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRII-LIGNKSDLVDMRAVS---AEDAVEFAEDQG-  164 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~~~~~~---~~~~~~~~~~~~-  164 (237)
                      |.......+..+|++++|+|+++....+. ...+..+..   .++|.+ +++||+|+.++.+..   .+++.+++...+ 
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~  163 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence            87766666788999999999987322222 122233332   357755 689999986532211   234556666654 


Q ss_pred             ----CeEEEEcCCCCC
Q 026548          165 ----LFFSEASALNGD  176 (237)
Q Consensus       165 ----~~~~~~Sa~~~~  176 (237)
                          ++++++||.++.
T Consensus       164 ~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       164 PGDDTPIIRGSALKAL  179 (394)
T ss_pred             CccCccEEECcccccc
Confidence                689999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.66  E-value=4.1e-15  Score=116.02  Aligned_cols=157  Identities=11%  Similarity=0.125  Sum_probs=91.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcce---eEEEEEEEECCEEEEEEEEeCCCcchhchhhHh-----hhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGV---EFQTRTVTINGKIIKAQIWDTAGQERYRAVTSA-----YYRG  100 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-----~~~~  100 (237)
                      ++|+++|.+|+|||||+|+|.+.........+.+.   ......+.... ...+.+|||||..........     .+..
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            68999999999999999999986654322222111   11111111111 235789999996543222222     2567


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC-----------CCHHHHHHHHH----HcC-
Q 026548          101 ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA-----------VSAEDAVEFAE----DQG-  164 (237)
Q Consensus       101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~-----------~~~~~~~~~~~----~~~-  164 (237)
                      +|+++++.+. ...  ..-..|+..+...   +.|+++|+||+|+.....           ...+..++.+.    ..+ 
T Consensus        81 ~d~~l~v~~~-~~~--~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~  154 (197)
T cd04104          81 YDFFIIISST-RFS--SNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV  154 (197)
T ss_pred             cCEEEEEeCC-CCC--HHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            8988887542 211  2223455555443   579999999999843111           01111222221    222 


Q ss_pred             -C-eEEEEcCC--CCCCHHHHHHHHHHHHHHh
Q 026548          165 -L-FFSEASAL--NGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       165 -~-~~~~~Sa~--~~~gi~~~~~~l~~~i~~~  192 (237)
                       . ++|.+|+.  .+.++..+.+.++..+.++
T Consensus       155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             CCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence             2 48999998  5678888777777776543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>CHL00071 tufA elongation factor Tu

Probab=99.66  E-value=2.8e-15  Score=129.24  Aligned_cols=148  Identities=16%  Similarity=0.095  Sum_probs=96.7

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCc----------------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFF----------------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE   88 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   88 (237)
                      ....++|+++|++++|||||+++|++..-.                .......+.+.  ....+.....++.|+||||+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChH
Confidence            344689999999999999999999864211                01112323332  223333333567899999999


Q ss_pred             hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC---CHHHHHHHHHHcC
Q 026548           89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV---SAEDAVEFAEDQG  164 (237)
Q Consensus        89 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~  164 (237)
                      .|.......+..+|++++|+|+.....-. ....+..+..   .++| +++++||+|+....+.   ..+++.++....+
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            88777777788999999999998643222 2222333332   3678 6789999998653221   1224455555543


Q ss_pred             -----CeEEEEcCCCCCCH
Q 026548          165 -----LFFSEASALNGDNV  178 (237)
Q Consensus       165 -----~~~~~~Sa~~~~gi  178 (237)
                           ++++.+||.+|.++
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        163 FPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCCcceEEEcchhhcccc
Confidence                 67999999988743

>cd01850 CDC_Septin CDC/Septin

Probab=99.66  E-value=2.9e-15  Score=122.40  Aligned_cols=141  Identities=16%  Similarity=0.260  Sum_probs=93.8

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC----------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch----
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD----------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA----   92 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----   92 (237)
                      ..++|+|+|.+|+|||||+|+|++..+...          ..++.........+..++..+.+.+|||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999999877544          234444555555666678888999999999432211    


Q ss_pred             ---h-------------------hHhhhc--CCcEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548           93 ---V-------------------TSAYYR--GALGAVVVYDITKR--QSFDHVARWVEELRAHADSSIRIILIGNKSDLV  146 (237)
Q Consensus        93 ---~-------------------~~~~~~--~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~  146 (237)
                         +                   ....+.  .+|+++++++.+..  ..++  ...+..+   . ..+|+++|+||+|+.
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D--~~~lk~l---~-~~v~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD--IEFMKRL---S-KRVNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH--HHHHHHH---h-ccCCEEEEEECCCcC
Confidence               0                   001222  57888888887641  1111  2222323   2 268999999999985


Q ss_pred             CC--cCCCHHHHHHHHHHcCCeEEEEcCC
Q 026548          147 DM--RAVSAEDAVEFAEDQGLFFSEASAL  173 (237)
Q Consensus       147 ~~--~~~~~~~~~~~~~~~~~~~~~~Sa~  173 (237)
                      ..  .......+.+.+..+++++|.....
T Consensus       157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         157 TPEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            42  2233556777788899998887653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.66  E-value=5.2e-15  Score=129.04  Aligned_cols=148  Identities=15%  Similarity=0.083  Sum_probs=97.6

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCC----------------cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEF----------------FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ   87 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   87 (237)
                      .....++|+++|++++|||||+++|+....                ........+.+.....+..++  ..+.|+|+||+
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh  154 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGH  154 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCH
Confidence            455679999999999999999999985211                111112223333333333333  46789999999


Q ss_pred             chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC---CHHHHHHHHHHc
Q 026548           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV---SAEDAVEFAEDQ  163 (237)
Q Consensus        88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~  163 (237)
                      +.|.......+..+|++++|+|+.+...... ..++..+..   .++| ++|++||+|+....+.   ..+++.++....
T Consensus       155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~  230 (478)
T PLN03126        155 ADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY  230 (478)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc
Confidence            9998877777889999999999987533222 233333333   3677 7789999998653221   122444555543


Q ss_pred             -----CCeEEEEcCCCCCC
Q 026548          164 -----GLFFSEASALNGDN  177 (237)
Q Consensus       164 -----~~~~~~~Sa~~~~g  177 (237)
                           .++++.+|+.++.+
T Consensus       231 g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        231 EFPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCCcCcceEEEEEcccccc
Confidence                 46799999988754

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.65  E-value=2.5e-15  Score=118.85  Aligned_cols=113  Identities=16%  Similarity=0.224  Sum_probs=78.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCC----------------CCCCcceeEEEEEEEEC--------CEEEEEEEEeCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFD----------------SKSTIGVEFQTRTVTIN--------GKIIKAQIWDTA   85 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~   85 (237)
                      +|+++|+.++|||||+.+|+...-...                .....+.......+.+.        +..+.+.|||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999975431100                00111111111122222        346789999999


Q ss_pred             CcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548           86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV  146 (237)
Q Consensus        86 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~  146 (237)
                      |++.|.......++.+|++++|||+.+....... ..+.....   .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCcc
Confidence            9999999999999999999999999986554432 22222222   368999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.65  E-value=4.3e-15  Score=120.97  Aligned_cols=112  Identities=18%  Similarity=0.138  Sum_probs=79.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCc------------------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFF------------------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      +|+++|++|+|||||+++|+...-.                  .......+.+.....+...+  .++.+|||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            5899999999999999999642110                  01112333333444444555  678899999999888


Q ss_pred             hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      ..+...++.+|++|+|+|+.+...... ...+..+..   .++|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            888899999999999999987432222 233333333   4689999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.64  E-value=3.4e-15  Score=130.57  Aligned_cols=151  Identities=23%  Similarity=0.220  Sum_probs=95.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC---------------------------------CCCCcceeEEEEEEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFD---------------------------------SKSTIGVEFQTRTVTI   72 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~   72 (237)
                      ...++|+++|++++|||||+.+|+...-...                                 ....++.+.....+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            4469999999999999999999975421110                                 0012233333333333


Q ss_pred             CCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC
Q 026548           73 NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS  152 (237)
Q Consensus        73 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~  152 (237)
                      ++  .++.|+||||++.|.......+..+|++++|+|+.....-.....+ ..+...  ...|++|++||+|+....+..
T Consensus       105 ~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l--g~~~iIvvvNKiD~~~~~~~~  179 (474)
T PRK05124        105 EK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL--GIKHLVVAVNKMDLVDYSEEV  179 (474)
T ss_pred             CC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh--CCCceEEEEEeeccccchhHH
Confidence            33  5788999999998876555667999999999999864321111111 111111  124788999999986432211


Q ss_pred             HHH----HHHHHHHc----CCeEEEEcCCCCCCHHHH
Q 026548          153 AED----AVEFAEDQ----GLFFSEASALNGDNVDTA  181 (237)
Q Consensus       153 ~~~----~~~~~~~~----~~~~~~~Sa~~~~gi~~~  181 (237)
                      .+.    ...+....    ..+++++||++|.|+++.
T Consensus       180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            222    22333333    367999999999999864

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.63  E-value=5.7e-15  Score=119.96  Aligned_cols=164  Identities=18%  Similarity=0.087  Sum_probs=113.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch----hhHh---hhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA----VTSA---YYRGA  101 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~---~~~~~  101 (237)
                      .-|.++|-||+|||||++++..-+......+.++....-..+.+.+. -.|.+-|.||.-+-.+    +-..   .+.++
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-ESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-CcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            45789999999999999999988766655566666665555655332 3578999999443322    2223   35688


Q ss_pred             cEEEEEEECCChh---hHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEE-EEcCCCC
Q 026548          102 LGAVVVYDITKRQ---SFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFS-EASALNG  175 (237)
Q Consensus       102 d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~  175 (237)
                      .++++|+|++..+   ..++......++..+..  .+.|.+||+||+|+....+...+...++....+...+ .+|+.++
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            9999999998643   35555555666655543  6799999999999765444333344445555554322 2999999


Q ss_pred             CCHHHHHHHHHHHHHHhh
Q 026548          176 DNVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       176 ~gi~~~~~~l~~~i~~~~  193 (237)
                      .|++++...+.+.+.+..
T Consensus       319 ~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         319 EGLDELLRALAELLEETK  336 (369)
T ss_pred             cCHHHHHHHHHHHHHHhh
Confidence            999999888877776654

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=1.1e-14  Score=124.44  Aligned_cols=152  Identities=20%  Similarity=0.192  Sum_probs=118.7

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      .++..=|.++|+..=|||||+.+|.+..+.......++....-..+.++.. -.+.|.||||+..|..|..+-....|++
T Consensus       150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIv  228 (683)
T KOG1145|consen  150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIV  228 (683)
T ss_pred             CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEE
Confidence            345667999999999999999999999988777677766666666666532 4688999999999999999999999999


Q ss_pred             EEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC---------CeEEEEcC
Q 026548          105 VVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG---------LFFSEASA  172 (237)
Q Consensus       105 ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa  172 (237)
                      ++|+.++|   +++.+.+.       .....++|+||.+||+|.++   .+++.+.+-...+|         +.++++||
T Consensus       229 VLVVAadDGVmpQT~EaIk-------hAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSA  298 (683)
T KOG1145|consen  229 VLVVAADDGVMPQTLEAIK-------HAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISA  298 (683)
T ss_pred             EEEEEccCCccHhHHHHHH-------HHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeec
Confidence            99999998   55554442       22225899999999999764   44566555444433         46899999


Q ss_pred             CCCCCHHHHHHHHHH
Q 026548          173 LNGDNVDTAFFRLLQ  187 (237)
Q Consensus       173 ~~~~gi~~~~~~l~~  187 (237)
                      ++|.|++.+-+++.-
T Consensus       299 l~g~nl~~L~eaill  313 (683)
T KOG1145|consen  299 LTGENLDLLEEAILL  313 (683)
T ss_pred             ccCCChHHHHHHHHH
Confidence            999999987766543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.63  E-value=4.7e-15  Score=127.66  Aligned_cols=147  Identities=26%  Similarity=0.271  Sum_probs=94.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcC---------------------------------CCCCCcceeEEEEEEEECCE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFF---------------------------------DSKSTIGVEFQTRTVTINGK   75 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~   75 (237)
                      ++|+++|+.++|||||+.+|+...-..                                 ......+.+.....+..++ 
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~-   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK-   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence            589999999999999999986432110                                 0011223333333343344 


Q ss_pred             EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCH--
Q 026548           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSA--  153 (237)
Q Consensus        76 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~--  153 (237)
                       .++.|+||||++.|.......+..+|++|+|+|+......+....| ..+...  ...+++|++||+|+........  
T Consensus        80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~--~~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLL--GIRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHc--CCCcEEEEEEecccccchHHHHHH
Confidence             4788999999999977666778999999999999864322222222 122221  1235889999999864322111  


Q ss_pred             --HHHHHHHHHcC---CeEEEEcCCCCCCHHH
Q 026548          154 --EDAVEFAEDQG---LFFSEASALNGDNVDT  180 (237)
Q Consensus       154 --~~~~~~~~~~~---~~~~~~Sa~~~~gi~~  180 (237)
                        ++...+....+   ++++++||.+|.|+++
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              22333344444   4699999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.63  E-value=1.8e-14  Score=102.79  Aligned_cols=106  Identities=21%  Similarity=0.190  Sum_probs=71.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh---------chhhHhhhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY---------RAVTSAYYR   99 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~~   99 (237)
                      +|+|+|.+|+|||||+|+|++.... ....+..+.......+.+++..  +.|+||||....         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6999999999999999999986442 2222444444444556677754  469999995321         112333448


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK  142 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK  142 (237)
                      .+|++++|+|+.++.. +.....++.+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            9999999999877322 23333444442    47999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.63  E-value=1.5e-14  Score=127.65  Aligned_cols=117  Identities=16%  Similarity=0.136  Sum_probs=79.2

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC-------------C----C---CCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD-------------S----K---STIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-------------~----~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      ...+|+|+|++++|||||+++|+...-...             .    .   ...+..+......+....+.+.+|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            456999999999999999999963111000             0    0   0012222222233333346789999999


Q ss_pred             cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      +..|.......++.+|++|+|+|+++.... ....++.....   .++|+++++||+|+..
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence            999988778889999999999999874322 23344443333   4799999999999753

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.62  E-value=1.2e-14  Score=126.20  Aligned_cols=149  Identities=17%  Similarity=0.177  Sum_probs=99.5

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCC-------------------------------cCCCCCCcceeEEEEEEEECC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEF-------------------------------FFDSKSTIGVEFQTRTVTING   74 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   74 (237)
                      ...++|+++|+.++|||||+.+|+...-                               ........+.+...  ..+..
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~--~~~~~   82 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIAL--WKFET   82 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEE--EEecC
Confidence            3468999999999999999998864211                               00111222333332  33333


Q ss_pred             EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhH-------HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 026548           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF-------DHVARWVEELRAHADSSIR-IILIGNKSDLV  146 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~-------~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~  146 (237)
                      ....+.|+|+||+++|.......+..+|++|+|+|+++. .+       ......+.....   .++| ++|++||+|+.
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDAT  158 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCC
Confidence            346788999999999999888889999999999999873 12       122222222222   3675 68899999975


Q ss_pred             CC-c-----CCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 026548          147 DM-R-----AVSAEDAVEFAEDQG-----LFFSEASALNGDNVDT  180 (237)
Q Consensus       147 ~~-~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  180 (237)
                      .. +     ....+++..++.+.+     ++++++||.+|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            21 1     112445666666666     5699999999999864

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.62  E-value=2.7e-14  Score=118.51  Aligned_cols=81  Identities=16%  Similarity=0.238  Sum_probs=56.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE---------------------CC-EEEEEEEEeCCCc-
Q 026548           31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI---------------------NG-KIIKAQIWDTAGQ-   87 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~l~Dt~G~-   87 (237)
                      |+++|.||+|||||+|+|++........+..+.+.......+                     ++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999998754333333333333222221                     22 3367999999996 


Q ss_pred             ---chhchhhHh---hhcCCcEEEEEEECC
Q 026548           88 ---ERYRAVTSA---YYRGALGAVVVYDIT  111 (237)
Q Consensus        88 ---~~~~~~~~~---~~~~~d~~ilv~d~~  111 (237)
                         +.+..+...   .++.+|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               444444444   489999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.62  E-value=1.1e-14  Score=118.85  Aligned_cols=141  Identities=20%  Similarity=0.220  Sum_probs=89.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCC------------------CCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSK------------------STIGVEFQTRTVTINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      +|+++|++|+|||||+++|+.........                  ...+.......+..++  +.+.+|||||+..+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            58999999999999999997533111100                  0111222223344444  578899999999888


Q ss_pred             hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEE--E
Q 026548           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFS--E  169 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~  169 (237)
                      ..+...++.+|++++|+|+++.........| ..+..   .++|+++++||+|+....  ..+...++....+.+++  .
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~  152 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ  152 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence            8888899999999999999886544333222 22322   478999999999986531  12233334344454433  3


Q ss_pred             EcCCCCCCH
Q 026548          170 ASALNGDNV  178 (237)
Q Consensus       170 ~Sa~~~~gi  178 (237)
                      +...++.++
T Consensus       153 ip~~~~~~~  161 (268)
T cd04170         153 LPIGEGDDF  161 (268)
T ss_pred             ecccCCCce
Confidence            334444444

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.62  E-value=1.9e-14  Score=116.13  Aligned_cols=157  Identities=22%  Similarity=0.193  Sum_probs=111.0

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hhhHh
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AVTSA   96 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~   96 (237)
                      .......++++|.|++|||||+++|++-+......+.++....+..+.++|  .++++.|+||.-.-.       ...-.
T Consensus        59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vls  136 (365)
T COG1163          59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLS  136 (365)
T ss_pred             eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeee
Confidence            344568899999999999999999999887776667777777778888887  678899999833221       22445


Q ss_pred             hhcCCcEEEEEEECCChhh-HHHHHHHHHH--------------------------------------------HHHh--
Q 026548           97 YYRGALGAVVVYDITKRQS-FDHVARWVEE--------------------------------------------LRAH--  129 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~--------------------------------------------~~~~--  129 (237)
                      .+++||++++|+|+..... .+.+.+.+..                                            ..-+  
T Consensus       137 v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA  216 (365)
T COG1163         137 VARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNA  216 (365)
T ss_pred             eeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccc
Confidence            6799999999999986443 3333222111                                            1000  


Q ss_pred             -------------------cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          130 -------------------ADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       130 -------------------~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                                         ...-+|.++|.||.|+.+     .++...+.+..  .++.+||+.+.|++++.+.|.+.+
T Consensus       217 ~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         217 DVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             eEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                               001478999999999865     33444444444  689999999999997776665543

>PRK13351 elongation factor G; Reviewed

Probab=99.62  E-value=2.8e-14  Score=130.66  Aligned_cols=118  Identities=18%  Similarity=0.202  Sum_probs=83.6

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCc--------CCC----------CCCcceeEEEEEEEECCEEEEEEEEeCC
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFF--------FDS----------KSTIGVEFQTRTVTINGKIIKAQIWDTA   85 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   85 (237)
                      +.+...+|+|+|+.++|||||+++|+...-.        ...          ....+.......+...+  +.+.+||||
T Consensus         4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtP   81 (687)
T PRK13351          4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTP   81 (687)
T ss_pred             ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECC
Confidence            3445789999999999999999999753210        000          01112222223333444  678999999


Q ss_pred             CcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        86 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      |+..+...+..+++.+|++|+|+|+++.........| ..+..   .++|+++++||+|+..
T Consensus        82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            9999998899999999999999999986655544333 33333   4789999999999864

>PRK00049 elongation factor Tu; Reviewed

Probab=99.61  E-value=2.8e-14  Score=122.52  Aligned_cols=145  Identities=18%  Similarity=0.109  Sum_probs=94.0

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCc----------------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFF----------------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER   89 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   89 (237)
                      ...++|+++|+.++|||||+++|++....                .......+.+.  ....+.....++.|+||||+..
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT--AHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee--eEEEEcCCCeEEEEEECCCHHH
Confidence            34689999999999999999999863110                01122333333  3333433335678999999988


Q ss_pred             hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcCC---CHHHHHHHHHHc--
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRII-LIGNKSDLVDMRAV---SAEDAVEFAEDQ--  163 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~~~~~---~~~~~~~~~~~~--  163 (237)
                      |.......+..+|++++|+|+....... ...++..+..   .++|.+ |++||+|+....+.   ..+++.++....  
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            8777777789999999999998743222 2233333333   368876 68999998642221   112333444443  


Q ss_pred             ---CCeEEEEcCCCCC
Q 026548          164 ---GLFFSEASALNGD  176 (237)
Q Consensus       164 ---~~~~~~~Sa~~~~  176 (237)
                         +++++.+||.++.
T Consensus       164 ~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        164 PGDDTPIIRGSALKAL  179 (396)
T ss_pred             CccCCcEEEeeccccc
Confidence               3679999999875

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=3.6e-15  Score=108.82  Aligned_cols=153  Identities=18%  Similarity=0.249  Sum_probs=115.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .-|++++|-.|+|||||++.|.++...... ||  ...+.....+.+  .+++.+|.+|+...+..|..++..+|++++.
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PT--lHPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PT--LHPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccccccccC-CC--cCCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            348999999999999999999888754332 43  334445566677  5678999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHH------HHc--------C---CeEEE
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFA------EDQ--------G---LFFSE  169 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~------~~~--------~---~~~~~  169 (237)
                      +|+-+.+-+.+.+..++.+..... ..+|++|.+||+|.+...  +.++.+...      -..        +   +.++.
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm  172 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM  172 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence            999999888888777777655443 689999999999987632  333322211      111        1   23778


Q ss_pred             EcCCCCCCHHHHHHHHHH
Q 026548          170 ASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       170 ~Sa~~~~gi~~~~~~l~~  187 (237)
                      ||...+.+-.+.|.|+..
T Consensus       173 csi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  173 CSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             EEEEccCccceeeeehhh
Confidence            888888887777776654

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.61  E-value=5.8e-14  Score=109.45  Aligned_cols=159  Identities=16%  Similarity=0.175  Sum_probs=96.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCC--CCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hh---H
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSK--STIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VT---S   95 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~---~   95 (237)
                      ++|+++|.+|+|||||+|+|++........  +..+.........+++  ..+.++||||......        +.   .
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999987544332  2333444444445566  3678999999543311        11   1


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCC------CHHHHHHHHHHcCCeE
Q 026548           96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAV------SAEDAVEFAEDQGLFF  167 (237)
Q Consensus        96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~  167 (237)
                      ....+.|++|+|+++.+ .+. .....++.+....+  .-.+++|++|+.|.......      .....+.+....+-.|
T Consensus        79 ~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            12367899999999987 222 22233444444332  12578899999996543211      1234555566666666


Q ss_pred             EEEcC-----CCCCCHHHHHHHHHHHHHH
Q 026548          168 SEASA-----LNGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       168 ~~~Sa-----~~~~gi~~~~~~l~~~i~~  191 (237)
                      +..+.     ..+.+++++++.+.+.+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            56554     3456667666655555544

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.60  E-value=1.4e-14  Score=131.41  Aligned_cols=152  Identities=24%  Similarity=0.230  Sum_probs=95.6

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC---------------C------------------CCCcceeEEEEEE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD---------------S------------------KSTIGVEFQTRTV   70 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---------------~------------------~~~~~~~~~~~~~   70 (237)
                      .....++|+++|++++|||||+++|+...-...               .                  ....+.+.....+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            344468999999999999999999986432111               0                  0112222333333


Q ss_pred             EECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           71 TINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        71 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      ..++  .++.|+||||++.|.......+..+|++++|+|+.....-+... .+..+...  ...+++|++||+|+.....
T Consensus       100 ~~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~--~~~~iivvvNK~D~~~~~~  174 (632)
T PRK05506        100 ATPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIASLL--GIRHVVLAVNKMDLVDYDQ  174 (632)
T ss_pred             ccCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHHHHh--CCCeEEEEEEecccccchh
Confidence            3333  46789999999988766666788999999999997643221111 11222222  1257889999999864221


Q ss_pred             CCH----HHHHHHHHHcC---CeEEEEcCCCCCCHHH
Q 026548          151 VSA----EDAVEFAEDQG---LFFSEASALNGDNVDT  180 (237)
Q Consensus       151 ~~~----~~~~~~~~~~~---~~~~~~Sa~~~~gi~~  180 (237)
                      ...    .++.++....+   ++++++||++|.|+.+
T Consensus       175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            111    22333444555   4589999999999874

>PLN03127 Elongation factor Tu; Provisional

Probab=99.60  E-value=3.7e-14  Score=123.03  Aligned_cols=159  Identities=16%  Similarity=0.095  Sum_probs=96.9

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcC------CC----------cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKN------EF----------FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      ......++|+++|+.++|||||+++|.+.      ..          ........+.+.....  +.....++.|+||||
T Consensus        56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~~~i~~iDtPG  133 (447)
T PLN03127         56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAKRHYAHVDCPG  133 (447)
T ss_pred             hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCCeEEEEEECCC
Confidence            34456799999999999999999999622      10          0111233344443333  333335788999999


Q ss_pred             cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCCC---HHHHHHHHHH
Q 026548           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAVS---AEDAVEFAED  162 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~---~~~~~~~~~~  162 (237)
                      +..|.......+..+|++++|+|+++...-+. ...+..+..   .++| +++++||+|+.++.+..   .++..++...
T Consensus       134 h~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~  209 (447)
T PLN03127        134 HADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSF  209 (447)
T ss_pred             ccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence            99887766666778999999999986432221 222233332   4688 57889999986532211   1122233332


Q ss_pred             c-----CCeEEEEcCC---CCCC-------HHHHHHHHHH
Q 026548          163 Q-----GLFFSEASAL---NGDN-------VDTAFFRLLQ  187 (237)
Q Consensus       163 ~-----~~~~~~~Sa~---~~~g-------i~~~~~~l~~  187 (237)
                      .     .++++.+|+.   ++.+       +.+++++|..
T Consensus       210 ~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~  249 (447)
T PLN03127        210 YKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE  249 (447)
T ss_pred             hCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHH
Confidence            2     3578888875   4444       4555544444

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=1.5e-14  Score=123.56  Aligned_cols=160  Identities=19%  Similarity=0.193  Sum_probs=115.5

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCc---------------CCCCCCcceeEEEEE-EEECCEEEEEEEEeCCCc
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFF---------------FDSKSTIGVEFQTRT-VTINGKIIKAQIWDTAGQ   87 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~   87 (237)
                      +.++..++.|+.+..=|||||..+|+...-.               ......+++.-.... +..+|..+.++++|||||
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            4567889999999999999999998753221               111122333222222 222467788999999999


Q ss_pred             chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH----Hc
Q 026548           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAE----DQ  163 (237)
Q Consensus        88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~----~~  163 (237)
                      ..|.....+.+..+|++|+|+|+...---+.+..++..+.    .+.-+|.|+||+|++..+   .+.+.....    ..
T Consensus       136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~ad---pe~V~~q~~~lF~~~  208 (650)
T KOG0462|consen  136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSAD---PERVENQLFELFDIP  208 (650)
T ss_pred             ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCC---HHHHHHHHHHHhcCC
Confidence            9999999999999999999999998554455555455444    367899999999997643   333333322    23


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          164 GLFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       164 ~~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      ..+++.+||++|.|+.++|+++++.+.
T Consensus       209 ~~~~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  209 PAEVIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             ccceEEEEeccCccHHHHHHHHHhhCC
Confidence            346999999999999999988887763

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=8.6e-15  Score=123.75  Aligned_cols=167  Identities=23%  Similarity=0.257  Sum_probs=109.4

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchh-ch--------hh
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERY-RA--------VT   94 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~--------~~   94 (237)
                      .+..++|+++|+||+|||||+|+|........+. +.++.+.....++++|  +.+.|.||+|..+. ..        ..
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA  342 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA  342 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence            3445899999999999999999999998776543 6666777777788888  56779999995551 11        12


Q ss_pred             HhhhcCCcEEEEEEECCCh--hhHHHHHHHHHHHHHhcC------CCCcEEEEEeCCCCCCC-cCCCHHHHHHHHH--Hc
Q 026548           95 SAYYRGALGAVVVYDITKR--QSFDHVARWVEELRAHAD------SSIRIILIGNKSDLVDM-RAVSAEDAVEFAE--DQ  163 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~------~~~p~vvv~nK~D~~~~-~~~~~~~~~~~~~--~~  163 (237)
                      ...+..+|++++|+|+...  ++...+...+........      ...|++++.||.|+..+ .+.... ...+..  ..
T Consensus       343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~  421 (531)
T KOG1191|consen  343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGR  421 (531)
T ss_pred             HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccC
Confidence            3356899999999999442  222222222222221111      23788999999998764 122111 111111  11


Q ss_pred             C-Ce-EEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548          164 G-LF-FSEASALNGDNVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       164 ~-~~-~~~~Sa~~~~gi~~~~~~l~~~i~~~~~  194 (237)
                      + .+ +.++|+++++|++++.+.+...+.....
T Consensus       422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             cccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            1 22 6669999999999988877776554433

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.59  E-value=2.8e-14  Score=123.95  Aligned_cols=150  Identities=17%  Similarity=0.136  Sum_probs=96.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCC--Cc-----------------------------CCCCCCcceeEEEEEEEECC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNE--FF-----------------------------FDSKSTIGVEFQTRTVTING   74 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~   74 (237)
                      ...++|+++|+.++|||||+.+|+...  ..                             .......+.+...  ..+..
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~--~~~~~   82 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIAL--WKFET   82 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeee--EEEcc
Confidence            346899999999999999999987521  00                             0011222333333  33333


Q ss_pred             EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 026548           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS---F---DHVARWVEELRAHADSSIR-IILIGNKSDLVD  147 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~  147 (237)
                      ....+.|+||||+.+|.......+..+|++++|+|+.....   +   ......+..+..   .++| ++|++||+|...
T Consensus        83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKT  159 (446)
T ss_pred             CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence            44678899999999998888888899999999999986421   0   122222222222   3666 678999999532


Q ss_pred             --CcCCC----HHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 026548          148 --MRAVS----AEDAVEFAEDQG-----LFFSEASALNGDNVDT  180 (237)
Q Consensus       148 --~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  180 (237)
                        ..+..    .+++.++....+     ++++.+|+.+|+|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              11111    233344444333     5699999999999864

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.58  E-value=1.5e-14  Score=114.49  Aligned_cols=169  Identities=15%  Similarity=0.152  Sum_probs=111.8

Q ss_pred             cccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEE-EEECCEEEEEEEEeCCCcch-------
Q 026548           18 ENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRT-VTINGKIIKAQIWDTAGQER-------   89 (237)
Q Consensus        18 ~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~-------   89 (237)
                      .++.+......++|+++|..|+|||||||+|+.+...+...-..+.+..... ..+++  -.+.|||+||.++       
T Consensus        29 ~~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~  106 (296)
T COG3596          29 LRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAE  106 (296)
T ss_pred             hhhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHH
Confidence            3344444556789999999999999999999987766555433333332222 22344  3578999999544       


Q ss_pred             hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---c----CCCHHHHHHHHHH
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM---R----AVSAEDAVEFAED  162 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~---~----~~~~~~~~~~~~~  162 (237)
                      ++.....++...|.+++++++.++.---+...|.+.+...  .+.++++++|.+|....   |    ......++++...
T Consensus       107 ~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~  184 (296)
T COG3596         107 HRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE  184 (296)
T ss_pred             HHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH
Confidence            7777888999999999999999865333333444444333  34899999999997542   1    1111122222221


Q ss_pred             --------c--CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          163 --------Q--GLFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       163 --------~--~~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                              .  =-|++.++...+.|++.+..+++..+.
T Consensus       185 k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         185 KAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence                    1  136888888999999988888777654

>PRK12739 elongation factor G; Reviewed

Probab=99.58  E-value=1.4e-13  Score=125.79  Aligned_cols=118  Identities=17%  Similarity=0.153  Sum_probs=84.4

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCc------------------CCCCCCcceeEEEEEEEECCEEEEEEEEeCC
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFF------------------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTA   85 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   85 (237)
                      ..++..+|+|+|++++|||||+++|+...-.                  ......++.+.....+..++  .++.|+|||
T Consensus         4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTP   81 (691)
T PRK12739          4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTP   81 (691)
T ss_pred             CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCC
Confidence            3456789999999999999999999742110                  00123344444455555555  578899999


Q ss_pred             CcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        86 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      |+..+...+...++.+|++|+|+|+.+....... ..+..+..   .++|+++++||+|+..
T Consensus        82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            9998888888899999999999999875433222 23333333   4689999999999864

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.57  E-value=9.6e-14  Score=126.97  Aligned_cols=119  Identities=18%  Similarity=0.112  Sum_probs=85.4

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-----C-------------CCCCcceeEEEEEEEECCEEEEEEEEeC
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFF-----D-------------SKSTIGVEFQTRTVTINGKIIKAQIWDT   84 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   84 (237)
                      ...++..+|+|+|++++|||||+++|+...-..     .             ....++.+.....+.+++  .++.||||
T Consensus         5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDT   82 (689)
T TIGR00484         5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDT   82 (689)
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEEC
Confidence            445567899999999999999999997422110     0             012334444445555555  67889999


Q ss_pred             CCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        85 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      ||+..+...+...++.+|++|+|+|+.+....... .++..+..   .++|+++++||+|+..
T Consensus        83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            99998888888899999999999999875444333 23333333   4689999999999875

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.56  E-value=4.5e-14  Score=122.46  Aligned_cols=164  Identities=15%  Similarity=0.132  Sum_probs=102.4

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCc---CCCCCCcceeEEEEEE---------------EECC-----------
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFF---FDSKSTIGVEFQTRTV---------------TING-----------   74 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~---------------~~~~-----------   74 (237)
                      .....++|+++|+...|||||+.+|.+...+   .......+.+......               ..+.           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            4466799999999999999999999974321   1111111111111100               0000           


Q ss_pred             -E----EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548           75 -K----IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR  149 (237)
Q Consensus        75 -~----~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~  149 (237)
                       .    ...+.|+|+||++.|.......+..+|++++|+|+.+..........+..+. .. .-.+++|++||+|+....
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~l-gi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IM-KLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-Hc-CCCcEEEEEecccccCHH
Confidence             0    1257899999999998777777889999999999986311111122222222 21 124688999999986422


Q ss_pred             C--CCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          150 A--VSAEDAVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       150 ~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      .  ...+++.++...   .+.+++.+||++|.|++.+++.|.+.+
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            1  112233333332   357899999999999998888777644

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.56  E-value=1.2e-13  Score=116.47  Aligned_cols=158  Identities=20%  Similarity=0.215  Sum_probs=116.5

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCC---------------cCCCCCCcceeEEEEEEEE---CCEEEEEEEEeCCC
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEF---------------FFDSKSTIGVEFQTRTVTI---NGKIIKAQIWDTAG   86 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G   86 (237)
                      ..+..+..++.+-.=|||||..+|+...-               +......+++......+.+   +|..+.++|+||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            34556788899999999999999865321               1122233343333333333   56779999999999


Q ss_pred             cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHH-HHHHHHHcCC
Q 026548           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAED-AVEFAEDQGL  165 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~-~~~~~~~~~~  165 (237)
                      |-.|.-...+.+..|.+.++|+|++..-..+.+...|..+..    +.-++-|+||+|++...   ++. .+++..-.|+
T Consensus        86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad---pervk~eIe~~iGi  158 (603)
T COG0481          86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD---PERVKQEIEDIIGI  158 (603)
T ss_pred             ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC---HHHHHHHHHHHhCC
Confidence            999998888889999999999999987666666666666654    67899999999997632   333 3344445665


Q ss_pred             e---EEEEcCCCCCCHHHHHHHHHHHH
Q 026548          166 F---FSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       166 ~---~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      +   .+.+||++|.||+++++.|++.+
T Consensus       159 d~~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         159 DASDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             CcchheeEecccCCCHHHHHHHHHhhC
Confidence            4   88999999999999988888765

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.54  E-value=5.7e-14  Score=118.93  Aligned_cols=173  Identities=15%  Similarity=0.138  Sum_probs=124.1

Q ss_pred             cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh----ch---
Q 026548           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY----RA---   92 (237)
Q Consensus        20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~---   92 (237)
                      ..+...+....++|+|.|++|||||+|.+..........+.++.......+  +.....++++||||.-..    +.   
T Consensus       160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IE  237 (620)
T KOG1490|consen  160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIE  237 (620)
T ss_pred             cCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHH
Confidence            345567778899999999999999999998887766655554444443333  344467899999992211    11   


Q ss_pred             --hhHhhhcCCcEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHH---HHHHHHHcCC
Q 026548           93 --VTSAYYRGALGAVVVYDITK--RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAED---AVEFAEDQGL  165 (237)
Q Consensus        93 --~~~~~~~~~d~~ilv~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~---~~~~~~~~~~  165 (237)
                        .+..+.+---+|+|++|++.  ..|.......++.+.... .+.|+|+|+||+|......+..+.   ...+...-++
T Consensus       238 mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v  316 (620)
T KOG1490|consen  238 MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV  316 (620)
T ss_pred             HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCc
Confidence              12233344456899999987  567777778888888877 589999999999986655544332   3333334458


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q 026548          166 FFSEASALNGDNVDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       166 ~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~  195 (237)
                      +++++|..+.+|+-++-...++.++..+-+
T Consensus       317 ~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE  346 (620)
T KOG1490|consen  317 KVVQTSCVQEEGVMDVRTTACEALLAARVE  346 (620)
T ss_pred             eEEEecccchhceeeHHHHHHHHHHHHHHH
Confidence            999999999999999999988887776653

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.53  E-value=5.4e-13  Score=113.94  Aligned_cols=83  Identities=18%  Similarity=0.270  Sum_probs=58.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE---------------------C-CEEEEEEEEeCCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI---------------------N-GKIIKAQIWDTAG   86 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~Dt~G   86 (237)
                      ++|+++|.||+|||||+|+|++........+..+.+.....+.+                     + ...+.+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            58999999999999999999988765433344444443333221                     1 1236789999999


Q ss_pred             cc----hhchhhHhh---hcCCcEEEEEEECC
Q 026548           87 QE----RYRAVTSAY---YRGALGAVVVYDIT  111 (237)
Q Consensus        87 ~~----~~~~~~~~~---~~~~d~~ilv~d~~  111 (237)
                      ..    ....+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            42    333444455   78999999999996

>TIGR00503 prfC peptide chain release factor 3

Probab=99.52  E-value=2e-13  Score=120.61  Aligned_cols=118  Identities=18%  Similarity=0.164  Sum_probs=80.2

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC--------------------CCCcceeEEEEEEEECCEEEEEEEEeCC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS--------------------KSTIGVEFQTRTVTINGKIIKAQIWDTA   85 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   85 (237)
                      .+..+|+|+|++++|||||+++|+...-....                    ....+..+......++...+++.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            34669999999999999999998632110000                    0111233333333444444788999999


Q ss_pred             CcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        86 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      |+..|.......++.+|++|+|+|+.+... .....++.....   .++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            999888777778899999999999987421 123344443332   4789999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.52  E-value=3.4e-14  Score=107.87  Aligned_cols=115  Identities=23%  Similarity=0.332  Sum_probs=70.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE-CCEEEEEEEEeCCCcchhchhhHh---hhcCCcEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQIWDTAGQERYRAVTSA---YYRGALGA  104 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~~  104 (237)
                      -.|+++|+.|||||+|+..|..+.......+. ....   .+.+ ......+.++|+||+.+.+.....   ++..+.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            36999999999999999999998654443322 1111   1111 112235779999999998875544   47899999


Q ss_pred             EEEEECCC-hhhHHHHHH-HHHHHHHhc--CCCCcEEEEEeCCCCCC
Q 026548          105 VVVYDITK-RQSFDHVAR-WVEELRAHA--DSSIRIILIGNKSDLVD  147 (237)
Q Consensus       105 ilv~d~~~-~~s~~~~~~-~~~~~~~~~--~~~~p~vvv~nK~D~~~  147 (237)
                      |||+|++. ......... ++..+....  ...+|++|+.||.|+..
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            99999974 334444433 333332222  36799999999999864

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK09866 hypothetical protein; Provisional

Probab=99.52  E-value=8.6e-13  Score=116.08  Aligned_cols=108  Identities=19%  Similarity=0.167  Sum_probs=72.8

Q ss_pred             EEEEEeCCCcchh-----chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC
Q 026548           78 KAQIWDTAGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS  152 (237)
Q Consensus        78 ~~~l~Dt~G~~~~-----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~  152 (237)
                      ++.|+||||....     .......+..+|+++||+|++...+..+ ....+.+.... ...|+++|+||+|+.......
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence            5779999996442     2234457899999999999987443333 12233343322 236999999999986433333


Q ss_pred             HHHHHHHHH----HcC---CeEEEEcCCCCCCHHHHHHHHHH
Q 026548          153 AEDAVEFAE----DQG---LFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       153 ~~~~~~~~~----~~~---~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      .+...++..    ..+   ..+|++||+.|.|++.+++.|..
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            455555533    222   24999999999999999988877

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.52  E-value=1.1e-13  Score=96.44  Aligned_cols=136  Identities=19%  Similarity=0.213  Sum_probs=98.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC----cchhchhhHhhhcCCcEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG----QERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~~i  105 (237)
                      ||+++|..|+|||||.++|.+.....  ..|.       -+.++...    .+||||    +..+..........+|.++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQ-------Ave~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQ-------AVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhh--cccc-------eeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            79999999999999999998876422  1221       12232221    679999    5555565666778999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAFFR  184 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~  184 (237)
                      +|-+++++.+.-.     ..+...  ...|+|-|++|+|+.++  ...+..+++..+-|.. +|++|+.++.|+++++..
T Consensus        70 ~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccCC-----cccccc--cccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            9999998754211     112222  24568999999999863  3456778888888864 999999999999999987


Q ss_pred             HHH
Q 026548          185 LLQ  187 (237)
Q Consensus       185 l~~  187 (237)
                      |..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            754

>PRK12740 elongation factor G; Reviewed

Probab=99.48  E-value=8.5e-13  Score=120.69  Aligned_cols=108  Identities=20%  Similarity=0.197  Sum_probs=76.2

Q ss_pred             EcCCCCcHHHHHHHHhcCCCc--------CC----------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhH
Q 026548           34 IGDSAVGKSQILSRFTKNEFF--------FD----------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTS   95 (237)
Q Consensus        34 ~G~~~sGKSsli~~l~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   95 (237)
                      +|++++|||||+++|+...-.        ..          .....+.......+...+  +.+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            599999999999999543211        00          012333444444455555  6788999999998888888


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      ..+..+|++++|+|++..........| ..+..   .++|+++++||+|+..
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence            889999999999999886554443323 33332   4789999999999753

>PRK00007 elongation factor G; Reviewed

Probab=99.48  E-value=1.7e-12  Score=118.85  Aligned_cols=119  Identities=16%  Similarity=0.106  Sum_probs=83.7

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCC--CcC---C-------------CCCCcceeEEEEEEEECCEEEEEEEEeC
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNE--FFF---D-------------SKSTIGVEFQTRTVTINGKIIKAQIWDT   84 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~--~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   84 (237)
                      ...++..+|+|+|++++|||||+++|+...  ...   .             .....+.+.....+.+.+  .++.|+||
T Consensus         5 ~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDT   82 (693)
T PRK00007          5 TPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDT   82 (693)
T ss_pred             CcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeC
Confidence            345667899999999999999999997311  100   0             123334444444555555  57889999


Q ss_pred             CCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        85 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      ||+..+.......++.+|++|+|+|+...-..+... .+..+..   .++|+++++||+|+..
T Consensus        83 PG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         83 PGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             CCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence            999888777777889999999999988754333322 2233333   4689999999999875

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.45  E-value=2.6e-12  Score=120.14  Aligned_cols=142  Identities=19%  Similarity=0.199  Sum_probs=99.0

Q ss_pred             cHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEE----------------EEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           40 GKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI----------------IKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        40 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      +||||+.+|.+......-...++.+.....+..+...                -.+.||||||++.|..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            4999999999999877666666666655555543210                127899999999998888888889999


Q ss_pred             EEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCH------------HHH-HHH--------
Q 026548          104 AVVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSA------------EDA-VEF--------  159 (237)
Q Consensus       104 ~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~------------~~~-~~~--------  159 (237)
                      +++|+|+++   +++++.+.    .+..   .++|+++++||+|+...+....            +.. .++        
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            999999987   44444332    2222   3689999999999864332110            111 111        


Q ss_pred             --HHH-------------c--CCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          160 --AED-------------Q--GLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       160 --~~~-------------~--~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                        ...             +  .++++++||++|+|+++++.+|...
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence              011             1  3579999999999999999877643

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=6.5e-13  Score=110.65  Aligned_cols=151  Identities=20%  Similarity=0.175  Sum_probs=97.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCC-------------------------------cCCCCCCcceeEEEEEEEECCE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEF-------------------------------FFDSKSTIGVEFQTRTVTINGK   75 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   75 (237)
                      ..++++++|+..+|||||+-+|+...-                               ........+.+.  ....+.-.
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~--~~~~fet~   83 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDV--AHSKFETD   83 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEE--EEEEeecC
Confidence            468999999999999999988864310                               011112223333  33333333


Q ss_pred             EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHH-----HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFD-----HVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        76 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~-----~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      .+.+.|+|+||+..|-......+.+||+.|+|+|+++.+.-.     ...+..-.+.+.. .--.+||++||+|..++.+
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~wde  162 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccccCH
Confidence            357889999999999888888899999999999998853111     1111111222222 2345789999999987544


Q ss_pred             CCHHHH----HHHHHHcC-----CeEEEEcCCCCCCHHH
Q 026548          151 VSAEDA----VEFAEDQG-----LFFSEASALNGDNVDT  180 (237)
Q Consensus       151 ~~~~~~----~~~~~~~~-----~~~~~~Sa~~~~gi~~  180 (237)
                      ...+++    ..+.+..|     ++|+++|+..|+|+.+
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            333333    23333433     5699999999999875

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.43  E-value=3.3e-12  Score=102.71  Aligned_cols=124  Identities=15%  Similarity=0.176  Sum_probs=76.4

Q ss_pred             cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchhc--h----
Q 026548           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERYR--A----   92 (237)
Q Consensus        20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~----   92 (237)
                      .........++|+|+|.+|+|||||+|+|++........ ...+..........++  ..+.+|||||.....  .    
T Consensus        23 ~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~  100 (249)
T cd01853          23 KGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNR  100 (249)
T ss_pred             HhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHH
Confidence            333566678999999999999999999999987544322 2233333333444455  567899999955431  1    


Q ss_pred             ----hhHhhhc--CCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 026548           93 ----VTSAYYR--GALGAVVVYDITKRQ-SFDHVARWVEELRAHADS--SIRIILIGNKSDLV  146 (237)
Q Consensus        93 ----~~~~~~~--~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~vvv~nK~D~~  146 (237)
                          ....++.  ..|++++|..++... ... -...+..+....+.  -.+++||.||+|..
T Consensus       101 ~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853         101 KILSSIKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHHHHHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence                1122332  678888887665422 222 12333333333221  25699999999974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.42  E-value=1.1e-11  Score=101.44  Aligned_cols=123  Identities=12%  Similarity=0.099  Sum_probs=73.4

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh-------h
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV-------T   94 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~   94 (237)
                      ......++|+|+|.+|+||||++|+|++........ .+.+..........++  ..+.++||||.......       .
T Consensus        33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~i  110 (313)
T TIGR00991        33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNII  110 (313)
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHH
Confidence            334568999999999999999999999887543221 2222222222233455  57889999996543221       1


Q ss_pred             Hhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCC
Q 026548           95 SAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVD  147 (237)
Q Consensus        95 ~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~  147 (237)
                      ..++  ...|++|||..++.......-...+..+....+  --.+++|++|+.|...
T Consensus       111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence            2222  268999999665432111111223333333322  1256899999999653

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.42  E-value=5.5e-12  Score=108.80  Aligned_cols=172  Identities=19%  Similarity=0.235  Sum_probs=126.6

Q ss_pred             hhhhhcccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch
Q 026548           13 RHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA   92 (237)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   92 (237)
                      |.+...+.........+.+.|+|+.++|||.|++.+.++.+...+..+....+....+.+.|....+.|.|.+-. ....
T Consensus       410 Rkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~  488 (625)
T KOG1707|consen  410 RKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDF  488 (625)
T ss_pred             hhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-cccc
Confidence            333344555567778999999999999999999999999988866677767777777777777777888888754 2222


Q ss_pred             hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe-EEEEc
Q 026548           93 VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF-FSEAS  171 (237)
Q Consensus        93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S  171 (237)
                      +...- ..+|+++++||++++.++..+...++.....  ...|+++|++|+|+.+..+...-...+++++++++ .+.+|
T Consensus       489 l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S  565 (625)
T KOG1707|consen  489 LTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHIS  565 (625)
T ss_pred             ccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeec
Confidence            22222 7799999999999999999887776664443  58999999999999764433222337889999986 55666


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 026548          172 ALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       172 a~~~~gi~~~~~~l~~~i  189 (237)
                      .++.-. .++|..|+...
T Consensus       566 ~~~~~s-~~lf~kL~~~A  582 (625)
T KOG1707|consen  566 SKTLSS-NELFIKLATMA  582 (625)
T ss_pred             cCCCCC-chHHHHHHHhh
Confidence            664323 77887776643

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.42  E-value=6.1e-12  Score=99.20  Aligned_cols=160  Identities=15%  Similarity=0.197  Sum_probs=91.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCC--CCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hhhH----
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSK--STIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AVTS----   95 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~----   95 (237)
                      ++|+|+|..|+||||++|.+++........  ...+.........+++.  .+.++||||.....       ..+.    
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            689999999999999999999988765432  33344555555677884  56799999933211       1111    


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCcCC-------CHHHHHHHHHHcCCe
Q 026548           96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS--SIRIILIGNKSDLVDMRAV-------SAEDAVEFAEDQGLF  166 (237)
Q Consensus        96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~vvv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~  166 (237)
                      ....+.|++|||+.+.. -+..+ ...+..+....+.  -..++||.|..|......+       ..+..+++.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~r-~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGR-FTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCc-chHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            12357899999999983 22222 2222333333321  2458888998886543321       012345566677777


Q ss_pred             EEEEcCC------CCCCHHHHHHHHHHHHHHh
Q 026548          167 FSEASAL------NGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       167 ~~~~Sa~------~~~gi~~~~~~l~~~i~~~  192 (237)
                      |...+.+      ....+.++|..+-+.+.+.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            8877765      2244566665554444443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.42  E-value=1.1e-12  Score=120.45  Aligned_cols=119  Identities=15%  Similarity=0.144  Sum_probs=81.2

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCC---------------CcCC---CCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNE---------------FFFD---SKSTIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      ..+..+|+++|+.++|||||+++|+...               +...   ...++........+.+++..+++.||||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG   95 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG   95 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence            3457899999999999999999997521               1110   111222222222333556668899999999


Q ss_pred             cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      +..|.......++.+|++|+|+|+.+....+....| .....   .+.|+++++||+|...
T Consensus        96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhccc
Confidence            999888888899999999999999874322222222 22222   3678899999999753

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.41  E-value=1.3e-11  Score=99.71  Aligned_cols=162  Identities=19%  Similarity=0.335  Sum_probs=117.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC--CEEEEEEEEeCCCcchhchhhHhhhcCC---
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--GKIIKAQIWDTAGQERYRAVTSAYYRGA---  101 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---  101 (237)
                      ..-+|+|+|+.++||||||.+|-+..   ......+..+....+.-+  +...++.+|-.-|.--+..+....+...   
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            34589999999999999999998776   333444455544433322  2235678899888877777776665433   


Q ss_pred             -cEEEEEEECCChhhH-HHHHHHHHHHHHhcC------------------------------------------------
Q 026548          102 -LGAVVVYDITKRQSF-DHVARWVEELRAHAD------------------------------------------------  131 (237)
Q Consensus       102 -d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------------------------  131 (237)
                       -++|++.|++++.++ +.+.+|...+.++.+                                                
T Consensus       128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~  207 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH  207 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence             357899999998544 567888776655411                                                


Q ss_pred             -------------CCCcEEEEEeCCCCCC----CcCCC-------HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          132 -------------SSIRIILIGNKSDLVD----MRAVS-------AEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       132 -------------~~~p~vvv~nK~D~~~----~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                                   .++|++||.+|+|...    ..+..       ...+++||.++|..++.+|++...+++-++.+|.+
T Consensus       208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence                         1689999999999732    22222       23467788899999999999999999999999998


Q ss_pred             HHHH
Q 026548          188 EIYG  191 (237)
Q Consensus       188 ~i~~  191 (237)
                      .+|.
T Consensus       288 r~yG  291 (473)
T KOG3905|consen  288 RSYG  291 (473)
T ss_pred             HhcC
Confidence            8764

>PTZ00258 GTP-binding protein; Provisional

Probab=99.40  E-value=7e-12  Score=106.24  Aligned_cols=86  Identities=19%  Similarity=0.153  Sum_probs=62.5

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEE---------------EEEEEEeCCCcchh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI---------------IKAQIWDTAGQERY   90 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~   90 (237)
                      ...++|+++|.||+|||||+|+|.+........|.++.+.....+.+++..               .++.++|+||....
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            446799999999999999999998887655555666666666666655332               35889999994422


Q ss_pred             c----h---hhHhhhcCCcEEEEEEECC
Q 026548           91 R----A---VTSAYYRGALGAVVVYDIT  111 (237)
Q Consensus        91 ~----~---~~~~~~~~~d~~ilv~d~~  111 (237)
                      .    .   .....++.+|++++|+|+.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1    1   2223467899999999973

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=3e-12  Score=112.85  Aligned_cols=164  Identities=20%  Similarity=0.217  Sum_probs=113.8

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC------------CE----EEEEEEEeCCCcch
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN------------GK----IIKAQIWDTAGQER   89 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~l~Dt~G~~~   89 (237)
                      -+..=++|+|+..+|||-|+..+.+.++......+++.......+...            +.    ---+.++||||++.
T Consensus       473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs  552 (1064)
T KOG1144|consen  473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES  552 (1064)
T ss_pred             cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence            334568999999999999999999888766655554433332222221            00    01367999999999


Q ss_pred             hchhhHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCH-------------
Q 026548           90 YRAVTSAYYRGALGAVVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSA-------------  153 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~-------------  153 (237)
                      |..+..+....||.+|+|+|+..   +++.+.+    +.++.   .+.|+||.+||+|....|....             
T Consensus       553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k  625 (1064)
T KOG1144|consen  553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK  625 (1064)
T ss_pred             hhhhhhccccccceEEEEeehhccCCcchhHHH----HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence            99999999999999999999987   3444333    33333   5899999999999765432210             


Q ss_pred             -----------HHHHHHHHH-cC-------------CeEEEEcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 026548          154 -----------EDAVEFAED-QG-------------LFFSEASALNGDNVDTAFFRLLQEIYGAVSKK  196 (237)
Q Consensus       154 -----------~~~~~~~~~-~~-------------~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~  196 (237)
                                 ..+.+|+.+ ++             +.++++||.+|+||.+++.+|++.....+..+
T Consensus       626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence                       011222221 11             24678999999999999999998776666543

>cd00066 G-alpha G protein alpha subunit

Probab=99.39  E-value=2.9e-11  Score=100.91  Aligned_cols=118  Identities=17%  Similarity=0.221  Sum_probs=84.6

Q ss_pred             EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCC
Q 026548           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----------QSFDHVARWVEELRAHAD-SSIRIILIGNKSD  144 (237)
Q Consensus        76 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D  144 (237)
                      .+.+.+||++|+...+..|..++.+++++|+|+|+++.          ..+......+..+..... .+.|++|++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            36788999999999999999999999999999999873          223333333333333222 5799999999999


Q ss_pred             CCCC---------------c-CCCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q 026548          145 LVDM---------------R-AVSAEDAVEFAED----------QGLFFSEASALNGDNVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       145 ~~~~---------------~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~  193 (237)
                      +..+               . ....+.+.++...          ..+.++.++|.+..++..+|+.+.+.|....
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            6321               0 2244555555442          2345677899999999999999988887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>smart00275 G_alpha G protein alpha subunit

Probab=99.35  E-value=5.9e-11  Score=99.88  Aligned_cols=117  Identities=16%  Similarity=0.204  Sum_probs=83.3

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCC
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----------QSFDHVARWVEELRAHAD-SSIRIILIGNKSDL  145 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~  145 (237)
                      +.+.+||.+|+...+..|..++.+++++|+|+|+++.          ..+......++.+..... .+.|++|++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            5678999999999999999999999999999999873          123333334444333222 67999999999997


Q ss_pred             CCC---------------cCCCHHHHHHHHHH-----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q 026548          146 VDM---------------RAVSAEDAVEFAED-----------QGLFFSEASALNGDNVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       146 ~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~  193 (237)
                      ...               .....+.+.++...           ..+.++.++|.+..++..+|+.+.+.|..+.
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            431               01234445544432           1244677889999999999999888877654

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.34  E-value=4.8e-12  Score=101.80  Aligned_cols=96  Identities=22%  Similarity=0.234  Sum_probs=78.1

Q ss_pred             chhchhhHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe
Q 026548           88 ERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF  166 (237)
Q Consensus        88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~  166 (237)
                      +++..+.+.+++++|.+++|||++++. ++..+.+|+..+..   .++|++||+||+|+........+....+ ...+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            667777888999999999999999877 89999999986654   5799999999999975444333334444 457889


Q ss_pred             EEEEcCCCCCCHHHHHHHHHH
Q 026548          167 FSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       167 ~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      ++++||+++.|++++|+.+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999987764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00101 ureG urease accessory protein UreG

Probab=99.34  E-value=2.5e-11  Score=94.67  Aligned_cols=101  Identities=14%  Similarity=0.054  Sum_probs=64.0

Q ss_pred             EEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHH
Q 026548           78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAV  157 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~  157 (237)
                      ...++++.|..-......   ..+|.+|.|+|+.+.+....  .+..++.      .--++++||+|+........+...
T Consensus        93 D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~~  161 (199)
T TIGR00101        93 EMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVME  161 (199)
T ss_pred             CEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHHH
Confidence            455777777322222111   12678999999987655321  1112221      112899999999753233344555


Q ss_pred             HHHHH--cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          158 EFAED--QGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       158 ~~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      +.++.  .+.++++||+++|.|++++|+++.+.+
T Consensus       162 ~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       162 RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            55554  347899999999999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=2.6e-11  Score=92.54  Aligned_cols=113  Identities=20%  Similarity=0.264  Sum_probs=77.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc---CCcEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR---GALGAVV  106 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~~il  106 (237)
                      .|+++|+.+||||+|+-.|..+.......+.   ......+.++..  .+.|+|.||+.+.+.-...++.   .+-+++|
T Consensus        40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi---epn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSI---EPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             cEEEEecCCCCceeeeeehhcCCccCeeeee---ccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            6999999999999999999888554333211   112222223332  3679999999999887777776   7899999


Q ss_pred             EEECCC-hhhHHHH-HHHHHHHHHh--cCCCCcEEEEEeCCCCCC
Q 026548          107 VYDITK-RQSFDHV-ARWVEELRAH--ADSSIRIILIGNKSDLVD  147 (237)
Q Consensus       107 v~d~~~-~~s~~~~-~~~~~~~~~~--~~~~~p~vvv~nK~D~~~  147 (237)
                      |+|... .....++ ...|..+...  ....+|++|+.||.|+.-
T Consensus       115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t  159 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT  159 (238)
T ss_pred             EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence            999764 2233333 3334444333  246799999999999843

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.32  E-value=2.1e-11  Score=112.31  Aligned_cols=118  Identities=16%  Similarity=0.167  Sum_probs=79.0

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC----------------CCCcceeEEEE--EEEECCEEEEEEEEeCCC
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS----------------KSTIGVEFQTR--TVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~--~~~~~~~~~~~~l~Dt~G   86 (237)
                      .++..+|+++|+.++|||||+.+|+...-....                ....+......  .+..++..+.+.|+||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            456779999999999999999999753211100                00111111111  122344457889999999


Q ss_pred             cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV  146 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~  146 (237)
                      +..|.......++.+|++|+|+|+...-.......|. ....   .+.|.++++||+|..
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~---~~~~~iv~iNK~D~~  152 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALR---ERVKPVLFINKVDRL  152 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHH---cCCCeEEEEECchhh
Confidence            9999888888899999999999988753332222232 2222   256889999999975

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.32  E-value=1.1e-10  Score=98.00  Aligned_cols=83  Identities=20%  Similarity=0.137  Sum_probs=59.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEE---------------EEEEEEeCCCcchhc--
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI---------------IKAQIWDTAGQERYR--   91 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~--   91 (237)
                      ++|+++|.||+|||||+|+|++........|.++.+.....+.+.+..               .++.+.|+||.....  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            689999999999999999999988544444666666665565555421               258899999944321  


Q ss_pred             --hh---hHhhhcCCcEEEEEEECC
Q 026548           92 --AV---TSAYYRGALGAVVVYDIT  111 (237)
Q Consensus        92 --~~---~~~~~~~~d~~ilv~d~~  111 (237)
                        .+   ....++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              12   222457999999999973

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.31  E-value=7e-11  Score=102.55  Aligned_cols=161  Identities=22%  Similarity=0.378  Sum_probs=112.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC--CEEEEEEEEeCCCcchhchhhHhhhcCC----
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--GKIIKAQIWDTAGQERYRAVTSAYYRGA----  101 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----  101 (237)
                      .-.|+|+|..++|||||+.+|.+..   ...++.+.+|....+.-+  +...++.+|-..|...+..++...+...    
T Consensus        25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            3589999999999999999987654   234566666665554432  1234688999988777777776666532    


Q ss_pred             cEEEEEEECCChhhHH-HHHHHHHHHHHh-------------------------------c-------------------
Q 026548          102 LGAVVVYDITKRQSFD-HVARWVEELRAH-------------------------------A-------------------  130 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~-~~~~~~~~~~~~-------------------------------~-------------------  130 (237)
                      -++|+|+|.+.|..+- .+..|+..+..+                               .                   
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            3588999999976553 455554443222                               0                   


Q ss_pred             ------------CCCCcEEEEEeCCCCCC----CcCC-------CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          131 ------------DSSIRIILIGNKSDLVD----MRAV-------SAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       131 ------------~~~~p~vvv~nK~D~~~----~~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                                  ..++|++||++|+|...    ....       .....+.||..+|+.++.||++...+++-++.+|.+
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h  261 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH  261 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence                        01489999999999632    1111       122356677789999999999999999988988888


Q ss_pred             HHHH
Q 026548          188 EIYG  191 (237)
Q Consensus       188 ~i~~  191 (237)
                      .++.
T Consensus       262 ~l~~  265 (472)
T PF05783_consen  262 RLYG  265 (472)
T ss_pred             Hhcc
Confidence            7764

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK13768 GTPase; Provisional

Probab=99.31  E-value=1.6e-11  Score=99.21  Aligned_cols=109  Identities=18%  Similarity=0.188  Sum_probs=68.8

Q ss_pred             EEEEEeCCCcchh---chhhHhhhc---C--CcEEEEEEECCChhhHHHH-H-HHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           78 KAQIWDTAGQERY---RAVTSAYYR---G--ALGAVVVYDITKRQSFDHV-A-RWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        78 ~~~l~Dt~G~~~~---~~~~~~~~~---~--~d~~ilv~d~~~~~s~~~~-~-~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      .+.+||+||+.+.   +..+..+++   .  .+++++|+|+......... . .|+...... ..++|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            4789999997653   333333332   2  8999999999764333222 2 222222211 24799999999999865


Q ss_pred             CcCCCHHHHHH----------------------------HHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          148 MRAVSAEDAVE----------------------------FAEDQG--LFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       148 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      ..+.  +...+                            ..+..+  .+++++|++++.|+++++++|.+.+
T Consensus       177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            3221  11111                            122333  5789999999999999998887765

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.31  E-value=1.5e-10  Score=97.37  Aligned_cols=164  Identities=18%  Similarity=0.154  Sum_probs=97.5

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC----CCc------------CCCCCC---cceeEEE---EEEEE---CCEEEEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN----EFF------------FDSKST---IGVEFQT---RTVTI---NGKIIKAQ   80 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~~---~~~~~~~~   80 (237)
                      ...+.|+|+|+.++|||||+|+|.+.    ...            +++.+.   ++++...   ..+.+   ++....+.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            34689999999999999999999988    332            112222   2222222   22222   34456788


Q ss_pred             EEeCCCcchh--------ch---------------------hhHhhhc-CCcEEEEEE-ECC-----ChhhHHHHHHHHH
Q 026548           81 IWDTAGQERY--------RA---------------------VTSAYYR-GALGAVVVY-DIT-----KRQSFDHVARWVE  124 (237)
Q Consensus        81 l~Dt~G~~~~--------~~---------------------~~~~~~~-~~d~~ilv~-d~~-----~~~s~~~~~~~~~  124 (237)
                      ++||+|....        ..                     -+...+. .+|+.|+|. |.+     .....+.-.+|+.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            9999992210        11                     0233455 899999998 653     1222333456667


Q ss_pred             HHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 026548          125 ELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK  196 (237)
Q Consensus       125 ~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~  196 (237)
                      .+..   .++|+++++|+.|-...  ...+...++..+++++++.+|...-. -+++. .|.+.++-.++-+
T Consensus       175 eLk~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l~-~~DI~-~il~~vL~EFPv~  239 (492)
T TIGR02836       175 ELKE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESMR-ESDIL-SVLEEVLYEFPIL  239 (492)
T ss_pred             HHHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHcC-HHHHH-HHHHHHHhcCCce
Confidence            7666   57999999999994321  13444556667788887777653221 22222 4445555555544

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.31  E-value=4.6e-11  Score=100.81  Aligned_cols=159  Identities=17%  Similarity=0.236  Sum_probs=105.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCC--------------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDS--------------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV   93 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   93 (237)
                      ..+|+++.+..-|||||+..|+.+.-....              ....+++.-.+..-+..+.+.+.|+|||||..|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            458999999999999999999865321110              012234444444444444478999999999999999


Q ss_pred             hHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC-CCHHHHHHHHH-------HcCC
Q 026548           94 TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA-VSAEDAVEFAE-------DQGL  165 (237)
Q Consensus        94 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~  165 (237)
                      ..+.+.-+|++++++|+.+..- ...+..+.....   .+.+.|||+||+|.+..+. .-.+++.++..       ++++
T Consensus        85 VERvl~MVDgvlLlVDA~EGpM-PQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCC-CchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            9999999999999999987321 112222232222   4677889999999876431 11223333332       4567


Q ss_pred             eEEEEcCCCCC----------CHHHHHHHHHHHHH
Q 026548          166 FFSEASALNGD----------NVDTAFFRLLQEIY  190 (237)
Q Consensus       166 ~~~~~Sa~~~~----------gi~~~~~~l~~~i~  190 (237)
                      |++..|+..|.          ++..+|+.|++++.
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp  195 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVP  195 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence            88888887664          45666666666553

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.31  E-value=1.2e-11  Score=115.18  Aligned_cols=119  Identities=19%  Similarity=0.203  Sum_probs=81.2

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC----------------CCCCcceeEEEEEEEE--------------C
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD----------------SKSTIGVEFQTRTVTI--------------N   73 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~   73 (237)
                      ..++..+|+|+|+.++|||||+++|+...-...                .....+.......+.+              .
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            355678999999999999999999975432100                0011111211112222              1


Q ss_pred             CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548           74 GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV  146 (237)
Q Consensus        74 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~  146 (237)
                      +..+.+.|+||||+..|.......++.+|++|+|+|+...-.......| ..+..   .++|++|++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH---CCCCEEEEEECCccc
Confidence            2356789999999999988888889999999999999875433333333 22322   478999999999976

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.31  E-value=3.1e-11  Score=98.65  Aligned_cols=149  Identities=26%  Similarity=0.282  Sum_probs=102.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCc---------------------------------CCCCCCcceeEEEEEEEEC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFF---------------------------------FDSKSTIGVEFQTRTVTIN   73 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~   73 (237)
                      ..++.+-+|...-||||||-+|+.+.-.                                 ......++++.....+..+
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~   84 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE   84 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence            4789999999999999999998754211                                 1112344555555555544


Q ss_pred             CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC-
Q 026548           74 GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS-  152 (237)
Q Consensus        74 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~-  152 (237)
                      ..  +|++-||||+++|......-..-||+.|+++|+...-  ....+-...+.... .-..++|.+||+|+.+..+.. 
T Consensus        85 KR--kFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv--l~QTrRHs~I~sLL-GIrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          85 KR--KFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV--LEQTRRHSFIASLL-GIRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             cc--eEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh--HHHhHHHHHHHHHh-CCcEEEEEEeeecccccCHHHH
Confidence            43  5789999999999887777788899999999996531  11111112233332 124578889999998654332 


Q ss_pred             ---HHHHHHHHHHcCCe---EEEEcCCCCCCHHH
Q 026548          153 ---AEDAVEFAEDQGLF---FSEASALNGDNVDT  180 (237)
Q Consensus       153 ---~~~~~~~~~~~~~~---~~~~Sa~~~~gi~~  180 (237)
                         .++...|+.++++.   ++++||..|+|+..
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence               33456688888854   89999999998764

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.31  E-value=1.1e-11  Score=88.90  Aligned_cols=114  Identities=32%  Similarity=0.397  Sum_probs=81.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997777654332 2222                           222223456788999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      ++.++..+++.+  |...+....+.++|.++++||.|+........+..        ..++++|++++.++.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            999999988766  77777665556788999999999854333333322        235677888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PTZ00416 elongation factor 2; Provisional

Probab=99.29  E-value=1.8e-11  Score=113.98  Aligned_cols=118  Identities=19%  Similarity=0.192  Sum_probs=79.6

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC----------------CCCCcceeEEEEEEEEC--------CEEEEEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD----------------SKSTIGVEFQTRTVTIN--------GKIIKAQ   80 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~   80 (237)
                      .+...+|+++|+.++|||||+++|+...-...                .....+.......+.+.        +....+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            45567999999999999999999986321100                00111111111122222        2246789


Q ss_pred             EEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548           81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV  146 (237)
Q Consensus        81 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~  146 (237)
                      |+||||+..|.......++.+|++|+|+|+.+.-..... ..+..+..   .++|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH---cCCCEEEEEEChhhh
Confidence            999999999988888889999999999999885333332 22333333   368999999999986

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.28  E-value=6.3e-11  Score=98.69  Aligned_cols=103  Identities=12%  Similarity=0.036  Sum_probs=66.3

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAE  154 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~  154 (237)
                      +.+.|+||+|.......   ....+|.++++.+....+....+..   .+..     +.-++|+||+|+......  ...
T Consensus       149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHHH
Confidence            56889999997643332   4667999999977555544443322   1222     223899999998653211  112


Q ss_pred             HHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          155 DAVEFAED-------QGLFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       155 ~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      +.......       +..+++.+|++++.|++++++.+.+++.
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            22222221       2357999999999999999999888754

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.26  E-value=4.3e-11  Score=90.73  Aligned_cols=62  Identities=21%  Similarity=0.216  Sum_probs=44.5

Q ss_pred             EEEEeCCCcch----hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 026548           79 AQIWDTAGQER----YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS  143 (237)
Q Consensus        79 ~~l~Dt~G~~~----~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~  143 (237)
                      +.|+||||...    ...++..++..+|++|+|.+++...+......+.......   ...+++|.||+
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            67999999532    3456778889999999999999866655555555554443   34488999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd01882 BMS1 Bms1

Probab=99.25  E-value=1.6e-10  Score=92.00  Aligned_cols=140  Identities=16%  Similarity=0.114  Sum_probs=82.0

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      .....|+|+|.+|+|||||++.|.+...........+. +  .....  ...++.++||||..  .. ....++.+|.++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i~~~--~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TVVTG--KKRRLTFIECPNDI--NA-MIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EEEec--CCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence            44577999999999999999999865321111111111 1  11111  23567899999854  22 334568899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCcCCC---HHHHHH-HHHH--cCCeEEEEcCCCCCC
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRI-ILIGNKSDLVDMRAVS---AEDAVE-FAED--QGLFFSEASALNGDN  177 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-vvv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~~g  177 (237)
                      +++|++....... ...+..+..   .+.|. ++|+||+|+.......   .+..++ +...  .+.+++.+||++.-.
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            9999976433222 223333333   35675 4599999986432111   111222 2221  236799999988743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=1.8e-10  Score=93.98  Aligned_cols=159  Identities=14%  Similarity=0.148  Sum_probs=96.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCC-------cCCCCCCcceeEEEEEEEE-------CCEEEEEEEEeCCCcchhch
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEF-------FFDSKSTIGVEFQTRTVTI-------NGKIIKAQIWDTAGQERYRA   92 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~   92 (237)
                      ..+++.++|...||||||.++|.....       +.......+.+.....+.+       .++.+++.++|+||+...-.
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR   85 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR   85 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence            459999999999999999999965321       1222233344444444443       35667899999999987776


Q ss_pred             hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--C-HHHHHHHHH---Hc---
Q 026548           93 VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--S-AEDAVEFAE---DQ---  163 (237)
Q Consensus        93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~-~~~~~~~~~---~~---  163 (237)
                      .+.....-.|..++|+|+......+..+-+  .+....  -...|||+||+|...+.+.  - .+..++..+   ..   
T Consensus        86 tiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~  161 (522)
T KOG0461|consen   86 TIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD  161 (522)
T ss_pred             HHHhhhheeeeeeEEEehhcccccccchhh--hhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence            666666777999999999864322222111  122211  2346788899986432211  1 112222222   22   


Q ss_pred             -CCeEEEEcCCCC----CCHHHHHHHHHHHH
Q 026548          164 -GLFFSEASALNG----DNVDTAFFRLLQEI  189 (237)
Q Consensus       164 -~~~~~~~Sa~~~----~gi~~~~~~l~~~i  189 (237)
                       +.|++++||..|    .++.++.+.|...+
T Consensus       162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  162 GNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             CCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence             268999999999    45555544444443

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.23  E-value=3.5e-11  Score=95.26  Aligned_cols=110  Identities=18%  Similarity=0.177  Sum_probs=63.6

Q ss_pred             EEEEEEeCCCcchh------chhh-Hhhhc-CCcEEEEEEECCC---hhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548           77 IKAQIWDTAGQERY------RAVT-SAYYR-GALGAVVVYDITK---RQSFDH-VARWVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~------~~~~-~~~~~-~~d~~ilv~d~~~---~~s~~~-~~~~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                      +...|+||||+.+.      ...+ ..+.. ..-++++++|...   +.+|-. +.+.-.   -..+.+.|+|++.||+|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS---ilyktklp~ivvfNK~D  192 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS---ILYKTKLPFIVVFNKTD  192 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH---HHHhccCCeEEEEeccc
Confidence            55789999996542      1122 22222 3345677777544   333322 211111   12236899999999999


Q ss_pred             CCCC-----cCCCHHHHHHHHHH---------------------cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          145 LVDM-----RAVSAEDAVEFAED---------------------QGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       145 ~~~~-----~~~~~~~~~~~~~~---------------------~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      +.+.     |--..+..++....                     .++..+-||+.+|.|.+++|..+-+.+
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v  263 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV  263 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence            8652     22222222222221                     134577899999999999998776654

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.22  E-value=1.1e-10  Score=91.81  Aligned_cols=151  Identities=15%  Similarity=0.120  Sum_probs=83.1

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC------CCCCcceeE------EEEEEEE-CC-------------------
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD------SKSTIGVEF------QTRTVTI-NG-------------------   74 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~------~~~~~~~~~------~~~~~~~-~~-------------------   74 (237)
                      ....|+|+|+.|+|||||++++........      .....+.+.      ....+.+ +|                   
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            578899999999999999999875411000      000000000      0000000 11                   


Q ss_pred             EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHH
Q 026548           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAE  154 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~  154 (237)
                      ....+.|++|.|.-....   .+.-..+..+.|+|+.+.+..  +... ...     ...|.++++||+|+.+......+
T Consensus       101 ~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~--~~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~  169 (207)
T TIGR00073       101 DDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDK--PLKY-PGM-----FKEADLIVINKADLAEAVGFDVE  169 (207)
T ss_pred             CCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccch--hhhh-HhH-----HhhCCEEEEEHHHccccchhhHH
Confidence            013455677766211111   111223445667777654321  1111 111     24567999999999653222334


Q ss_pred             HHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          155 DAVEFAEDQG--LFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       155 ~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      ...+..++.+  .+++++||+++.|++++|+++.+.
T Consensus       170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4554454443  789999999999999999998774

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.22  E-value=1.5e-10  Score=97.17  Aligned_cols=155  Identities=13%  Similarity=0.137  Sum_probs=74.1

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCC--cceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhh-----h
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKST--IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAY-----Y   98 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-----~   98 (237)
                      ..++|+|+|.+|+|||||||+|.+-.-.. ...++  +.++.....+..+..+ .+.+||.||..........|     +
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            47899999999999999999998743222 22221  1222233333333322 47799999954433333333     4


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC--C-----CCcCCCHH----HHHHHHH----Hc
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL--V-----DMRAVSAE----DAVEFAE----DQ  163 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~--~-----~~~~~~~~----~~~~~~~----~~  163 (237)
                      ..-|.+|++.+-.=...  + ......+..   .+.|+++|-+|+|.  .     ..+..+.+    .+++.+.    +.
T Consensus       113 ~~yD~fiii~s~rf~~n--d-v~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~  186 (376)
T PF05049_consen  113 YRYDFFIIISSERFTEN--D-VQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA  186 (376)
T ss_dssp             GG-SEEEEEESSS--HH--H-HHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred             cccCEEEEEeCCCCchh--h-HHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence            56787777665332221  1 122233444   47899999999995  1     11233333    3333322    23


Q ss_pred             CC---eEEEEcCCCCCC--HHHHHHHHHHH
Q 026548          164 GL---FFSEASALNGDN--VDTAFFRLLQE  188 (237)
Q Consensus       164 ~~---~~~~~Sa~~~~g--i~~~~~~l~~~  188 (237)
                      ++   ++|.+|..+-..  ...+.+.|.+.
T Consensus       187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~d  216 (376)
T PF05049_consen  187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKD  216 (376)
T ss_dssp             T-SS--EEEB-TTTTTSTTHHHHHHHHHHH
T ss_pred             CCCcCceEEEeCCCcccCChHHHHHHHHHH
Confidence            43   488999876543  44444444443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.22  E-value=6.2e-12  Score=100.55  Aligned_cols=111  Identities=18%  Similarity=0.145  Sum_probs=58.3

Q ss_pred             EEEEEeCCCcchhchhhHhhh--------cCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548           78 KAQIWDTAGQERYRAVTSAYY--------RGALGAVVVYDITKRQS-FDHVARWVEELRAHADSSIRIILIGNKSDLVDM  148 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~  148 (237)
                      .+.|+|||||.+....+....        ...-++++++|+....+ ...+..++..+......+.|.|.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            577999999988766555433        34556889999764322 222333333333322257999999999999762


Q ss_pred             c-------CCC------------HHHHHHHHHH---cC-C-eEEEEcCCCCCCHHHHHHHHHHH
Q 026548          149 R-------AVS------------AEDAVEFAED---QG-L-FFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       149 ~-------~~~------------~~~~~~~~~~---~~-~-~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      .       -..            .....+++.-   .+ . .++.+|+.+++|+.+++..+-+.
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            1       000            0111122222   23 3 68999999999999998666544

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.19  E-value=2.8e-10  Score=93.19  Aligned_cols=140  Identities=16%  Similarity=0.232  Sum_probs=76.7

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC----------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch----
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDS----------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA----   92 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----   92 (237)
                      -.++|+|+|..|+|||||+|.|++.......          ..+.........+.-++..+.+.++||||......    
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            3689999999999999999999987654332          12222333333445578888999999999221100    


Q ss_pred             --hhHhhh---------------------cCCcEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548           93 --VTSAYY---------------------RGALGAVVVYDITKR-QSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM  148 (237)
Q Consensus        93 --~~~~~~---------------------~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~  148 (237)
                        ....++                     .++|++||.++.+.. -.-.++    ..+.... ..+++|-|+.|+|....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di----~~mk~Ls-~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI----EFMKRLS-KRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH----HHHHHHT-TTSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH----HHHHHhc-ccccEEeEEecccccCH
Confidence              010111                     477999999998652 111222    2233333 36889999999997542


Q ss_pred             cCC--CHHHHHHHHHHcCCeEEEEc
Q 026548          149 RAV--SAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus       149 ~~~--~~~~~~~~~~~~~~~~~~~S  171 (237)
                      .+.  ..+.+.+.....++.+|...
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S----
T ss_pred             HHHHHHHHHHHHHHHHcCceeeccc
Confidence            221  13334455556777766543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.17  E-value=1.7e-09  Score=89.78  Aligned_cols=127  Identities=17%  Similarity=0.263  Sum_probs=90.0

Q ss_pred             EEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh-------hhHHHHHHHHHHHHHhcC----CCC
Q 026548           66 QTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR-------QSFDHVARWVEELRAHAD----SSI  134 (237)
Q Consensus        66 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~-------~s~~~~~~~~~~~~~~~~----~~~  134 (237)
                      ....+.+.+  +.+.++|.+|+...+..|..++.+++++|+|+++++.       ....++..-++.+...+.    .+.
T Consensus       186 ~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~t  263 (354)
T KOG0082|consen  186 VEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANT  263 (354)
T ss_pred             eEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccC
Confidence            334444555  5688999999999999999999999999999998862       223444444444444432    578


Q ss_pred             cEEEEEeCCCCCCC---------------cCCCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          135 RIILIGNKSDLVDM---------------RAVSAEDAVEFAED----------QGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       135 p~vvv~nK~D~~~~---------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      ++++++||.|+-++               ..-..+++..+...          ..+.+..+.|.+..+|+.+|.+..+.|
T Consensus       264 siiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~I  343 (354)
T KOG0082|consen  264 SIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTI  343 (354)
T ss_pred             cEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHH
Confidence            99999999998431               11234444444331          134577789999999999999999988


Q ss_pred             HHhhh
Q 026548          190 YGAVS  194 (237)
Q Consensus       190 ~~~~~  194 (237)
                      ....-
T Consensus       344 i~~nl  348 (354)
T KOG0082|consen  344 IQNNL  348 (354)
T ss_pred             HHHHH
Confidence            77654

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.16  E-value=1.4e-09  Score=96.42  Aligned_cols=123  Identities=15%  Similarity=0.203  Sum_probs=76.6

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hh-
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AV-   93 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~-   93 (237)
                      .+.+..++|+|+|.+|+||||++|+|++........ ...+..........++  ..+.++||||.....       .. 
T Consensus       113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL  190 (763)
T TIGR00993       113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL  190 (763)
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence            455667899999999999999999999987543322 1222233233334455  467899999955321       11 


Q ss_pred             --hHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 026548           94 --TSAYYR--GALGAVVVYDITKRQSFDHVARWVEELRAHADSS--IRIILIGNKSDLVD  147 (237)
Q Consensus        94 --~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~vvv~nK~D~~~  147 (237)
                        ...++.  ..|++|+|..++.......-..+++.+...++.+  ..+|||+|+.|...
T Consensus       191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence              122333  5899999988764322112224555555554422  45889999999754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.15  E-value=8.7e-11  Score=95.05  Aligned_cols=168  Identities=17%  Similarity=0.139  Sum_probs=112.8

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch---------hchhh
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER---------YRAVT   94 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~   94 (237)
                      ......-|.|+|..|+|||||+++|.+-...+...-..+.+.+......+... .+.+.||.|.-.         |....
T Consensus       174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATL  252 (410)
T KOG0410|consen  174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATL  252 (410)
T ss_pred             ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHH
Confidence            33445579999999999999999999777666665555566666666665443 367999999432         22222


Q ss_pred             HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc----EEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEE
Q 026548           95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR----IILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEA  170 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                       .-...+|.++.|.|+++|..-......+..+....-...|    ++=|-||+|...... ..|       .++  .+.+
T Consensus       253 -eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-e~E-------~n~--~v~i  321 (410)
T KOG0410|consen  253 -EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-EEE-------KNL--DVGI  321 (410)
T ss_pred             -HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-ccc-------cCC--cccc
Confidence             2357899999999999988766666666655554322233    345667887644221 111       121  5678


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhccccccCCC
Q 026548          171 SALNGDNVDTAFFRLLQEIYGAVSKKELECGNG  203 (237)
Q Consensus       171 Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~~~~~  203 (237)
                      |+.+|+|++++...+-.++.....-.+......
T Consensus       322 saltgdgl~el~~a~~~kv~~~t~~~e~~Lr~d  354 (410)
T KOG0410|consen  322 SALTGDGLEELLKAEETKVASETTVDEDQLRND  354 (410)
T ss_pred             ccccCccHHHHHHHHHHHhhhhheeeeEEeecC
Confidence            999999999999888888777766555444443

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=3.6e-10  Score=97.83  Aligned_cols=155  Identities=24%  Similarity=0.254  Sum_probs=100.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCC--------------------CcCCC---------CCCcceeEEEEEEEECCEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNE--------------------FFFDS---------KSTIGVEFQTRTVTINGKI   76 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~--------------------~~~~~---------~~~~~~~~~~~~~~~~~~~   76 (237)
                      ...++++|+|+..+|||||+.+|+..-                    ....|         ....++...+....++-..
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~  254 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS  254 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence            357999999999999999998875421                    11000         1222344444444444444


Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh---hHHHH--HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SFDHV--ARWVEELRAHADSSIRIILIGNKSDLVDMRAV  151 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~--~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~  151 (237)
                      ..+.|+|+||+..|......-...+|+.++|+|++...   .|+..  .+....+.+.. .--.++|++||+|+.++.+-
T Consensus       255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Wsq~  333 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWSQD  333 (603)
T ss_pred             eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCccHH
Confidence            66889999999999888888889999999999998622   22211  11112222222 13457899999999876554


Q ss_pred             CHHHHH----HHH-HHcC-----CeEEEEcCCCCCCHHHH
Q 026548          152 SAEDAV----EFA-EDQG-----LFFSEASALNGDNVDTA  181 (237)
Q Consensus       152 ~~~~~~----~~~-~~~~-----~~~~~~Sa~~~~gi~~~  181 (237)
                      ..+++.    .|. +..|     +.+++||+..|.|+-..
T Consensus       334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            444443    344 3333     46999999999987543

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.1e-09  Score=99.18  Aligned_cols=119  Identities=18%  Similarity=0.228  Sum_probs=84.2

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC-----C-----------CCCcceeEEEEEEEECCE-EEEEEEEeCCCc
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD-----S-----------KSTIGVEFQTRTVTINGK-IIKAQIWDTAGQ   87 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~   87 (237)
                      ..+..+|.++|+..+|||||..+|+...-...     .           ....+.+......++... .+.++|+|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            45678999999999999999999864321110     0           011133333333333333 478999999999


Q ss_pred             chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      -+|.....+.++-+|++++|+|+...-..+.-.-|.....    .++|.++++||+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECccccc
Confidence            9999999999999999999999987543333333433332    4799999999999764

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.12  E-value=4e-10  Score=85.35  Aligned_cols=79  Identities=18%  Similarity=0.103  Sum_probs=55.6

Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--CeEEEEcCCCCCCHHH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--LFFSEASALNGDNVDT  180 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~  180 (237)
                      .-|+|+|++..+....  +....+.      .-=++|+||.|+...-....+...+-+++.+  .+++++|.++|.|+++
T Consensus       120 ~~v~VidvteGe~~P~--K~gP~i~------~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~  191 (202)
T COG0378         120 LRVVVIDVTEGEDIPR--KGGPGIF------KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDE  191 (202)
T ss_pred             eEEEEEECCCCCCCcc--cCCCcee------EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHH
Confidence            6788888876532110  0000010      1237999999998877777787777777664  7899999999999999


Q ss_pred             HHHHHHHHH
Q 026548          181 AFFRLLQEI  189 (237)
Q Consensus       181 ~~~~l~~~i  189 (237)
                      ++.++....
T Consensus       192 ~~~~i~~~~  200 (202)
T COG0378         192 WLRFIEPQA  200 (202)
T ss_pred             HHHHHHhhc
Confidence            998887653

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.12  E-value=7.4e-10  Score=91.87  Aligned_cols=102  Identities=20%  Similarity=0.053  Sum_probs=63.0

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCH--H
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSA--E  154 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~--~  154 (237)
                      +.+.|+||+|.....   ...+..+|.++++.....   .+.+......+     .++|.++++||+|+........  .
T Consensus       127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHHH
Confidence            668899999854222   235667888888754332   23333333322     2467899999999875321100  0


Q ss_pred             ----HHHHHHH---HcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          155 ----DAVEFAE---DQGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       155 ----~~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                          ....+..   .+..+++.+||+++.|++++++++.+..
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence                0011111   1234699999999999999999988863

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>smart00053 DYNc Dynamin, GTPase

Probab=99.11  E-value=1e-09  Score=87.59  Aligned_cols=119  Identities=16%  Similarity=0.241  Sum_probs=70.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeE-----------EEEEEEECC--------------------
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEF-----------QTRTVTING--------------------   74 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~--------------------   74 (237)
                      .....|+|+|+.|+||||+++++.+..+.+......+...           +...+...+                    
T Consensus        24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  103 (240)
T smart00053       24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV  103 (240)
T ss_pred             CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence            3456899999999999999999998763322211111000           000000000                    


Q ss_pred             -------------------EEEEEEEEeCCCcch-------------hchhhHhhhc-CCcEEEEEEECCChhhHHHHHH
Q 026548           75 -------------------KIIKAQIWDTAGQER-------------YRAVTSAYYR-GALGAVVVYDITKRQSFDHVAR  121 (237)
Q Consensus        75 -------------------~~~~~~l~Dt~G~~~-------------~~~~~~~~~~-~~d~~ilv~d~~~~~s~~~~~~  121 (237)
                                         ....+.|+|+||...             ...+...+++ ..+++++|+|++..-.-.....
T Consensus       104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~  183 (240)
T smart00053      104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK  183 (240)
T ss_pred             cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence                               003578999999542             1224555667 4568999998865322222223


Q ss_pred             HHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548          122 WVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus       122 ~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      ..+.+..   .+.|+++|+||.|...
T Consensus       184 ia~~ld~---~~~rti~ViTK~D~~~  206 (240)
T smart00053      184 LAKEVDP---QGERTIGVITKLDLMD  206 (240)
T ss_pred             HHHHHHH---cCCcEEEEEECCCCCC
Confidence            3333332   5789999999999865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=2.7e-10  Score=92.15  Aligned_cols=162  Identities=18%  Similarity=0.145  Sum_probs=102.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC---CCCCCcceeEEEE------------------EEEEC--C----EEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF---DSKSTIGVEFQTR------------------TVTIN--G----KIIK   78 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~------------------~~~~~--~----~~~~   78 (237)
                      +..++|.++|+..=|||||.++|.+--...   .-...+++.....                  .-...  +    -.=.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            457899999999999999999997632111   1111111111000                  00000  0    0114


Q ss_pred             EEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--CCCHHHH
Q 026548           79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR--AVSAEDA  156 (237)
Q Consensus        79 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~--~~~~~~~  156 (237)
                      +.|.|.||++-.-...-.-..-+|++++|+.++.+-.-......+-.+.-.  .-..++|+-||+|+...+  ..+.+++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHHH
Confidence            779999999877665555566789999999999732222222222222222  134589999999997543  2345567


Q ss_pred             HHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          157 VEFAED---QGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       157 ~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      ++|.+.   .+.|++.+||..+.||+-++++|.+.|
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence            777764   367899999999999998777776655

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=4.9e-09  Score=87.13  Aligned_cols=84  Identities=18%  Similarity=0.171  Sum_probs=61.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECC----------------EEEEEEEEeCCCcchh-
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING----------------KIIKAQIWDTAGQERY-   90 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~Dt~G~~~~-   90 (237)
                      .+++.++|-||+|||||+|+++.........|..+++.....+.+..                .+..+.++|.+|.-.- 
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999999886555557777766666555422                2356889999984322 


Q ss_pred             ---chhhH---hhhcCCcEEEEEEECC
Q 026548           91 ---RAVTS---AYYRGALGAVVVYDIT  111 (237)
Q Consensus        91 ---~~~~~---~~~~~~d~~ilv~d~~  111 (237)
                         ..+-.   .-++.+|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence               22333   3458999999999965

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.09  E-value=6.3e-10  Score=86.10  Aligned_cols=146  Identities=21%  Similarity=0.251  Sum_probs=92.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-----hhHhhhcCC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-----VTSAYYRGA  101 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~  101 (237)
                      .-||+++|..||||||+=-.+..+-... ...++.++++....+.+-|. ..+.+||++|++.+-.     .....+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            3489999999999999765555333222 22344455665555555554 4589999999885432     334578999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCC--cCCCHHHHHHHHH----HcCCeEEEEcCC
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHA--DSSIRIILIGNKSDLVDM--RAVSAEDAVEFAE----DQGLFFSEASAL  173 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~--~~~~~~~~~~~~~----~~~~~~~~~Sa~  173 (237)
                      +++|+|||+...+-..++..+...+....  .+...+++..+|.|+...  ++...+.-.+...    ..++.++.+|.+
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw  162 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW  162 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence            99999999998766666655555333322  267778999999998653  2222222222222    234557777755


Q ss_pred             C
Q 026548          174 N  174 (237)
Q Consensus       174 ~  174 (237)
                      +
T Consensus       163 D  163 (295)
T KOG3886|consen  163 D  163 (295)
T ss_pred             h
Confidence            3

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=1.5e-09  Score=95.19  Aligned_cols=119  Identities=21%  Similarity=0.268  Sum_probs=85.4

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCC-----------------CcceeEEEEEEEE---CCEEEEEEEE
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-----------------TIGVEFQTRTVTI---NGKIIKAQIW   82 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~l~   82 (237)
                      .......+|+++|+-..|||+|+..|..+..+..+..                 ..++......+.+   .++.+-++++
T Consensus       123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil  202 (971)
T KOG0468|consen  123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL  202 (971)
T ss_pred             cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence            3556788999999999999999999987765433211                 1111112222222   4666779999


Q ss_pred             eCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548           83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL  145 (237)
Q Consensus        83 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~  145 (237)
                      ||||+-.|.......++.+|++++++|+.+.-.+..-+-..+.+.    ...|+++|+||.|.
T Consensus       203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR  261 (971)
T ss_pred             cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence            999999999999999999999999999988655543222222222    47999999999995

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.04  E-value=9.1e-09  Score=85.04  Aligned_cols=162  Identities=13%  Similarity=0.209  Sum_probs=96.7

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC----------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh---ch
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFD----------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY---RA   92 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~   92 (237)
                      .-.++|+++|+.|+|||||+|.|++......          ..+++....+...+.-++..+.+.++||||...+   ..
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            4579999999999999999999998743322          1233344444445555788889999999992221   00


Q ss_pred             hh-----------Hhhh--------------cCCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548           93 VT-----------SAYY--------------RGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLV  146 (237)
Q Consensus        93 ~~-----------~~~~--------------~~~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~  146 (237)
                      .|           ..++              .++|+++|.+..+.. .+..+ ...+..+.    ..+.+|-|+.|+|..
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence            11           1111              467999999987652 22222 12222233    356788889999975


Q ss_pred             CCcC--CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548          147 DMRA--VSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       147 ~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~  194 (237)
                      ...+  ...+.+++....+++++|.  ..+.+..+.-.....+.+...+|
T Consensus       176 T~~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~~~e~~e~~~~l~~~~P  223 (373)
T COG5019         176 TDDELAEFKERIREDLEQYNIPVFD--PYDPEDDEDESLEENQDLRSLIP  223 (373)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCceeC--CCCccccchhhHHHHHHHhhcCC
Confidence            4322  2244566677788999775  23333332222234444444443

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=3e-09  Score=89.48  Aligned_cols=131  Identities=20%  Similarity=0.182  Sum_probs=86.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCC---------------C-----CCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFD---------------S-----KSTIGVEFQTRTVTINGKIIKAQIWDTAGQER   89 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   89 (237)
                      ..+|+-+|.+|||||-..|+.-.-...               +     ....++.+....+.++.....++|.||||++.
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD   93 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED   93 (528)
T ss_pred             ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence            688999999999999998752110000               0     01123444444444554457788999999999


Q ss_pred             hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF  166 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~  166 (237)
                      |..-+=+.+..+|.+++|+|+...-.-+ ..++++..+.   .++|++=++||.|...  .-+.+...++...+++.
T Consensus        94 FSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KLfeVcrl---R~iPI~TFiNKlDR~~--rdP~ELLdEiE~~L~i~  164 (528)
T COG4108          94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKLFEVCRL---RDIPIFTFINKLDREG--RDPLELLDEIEEELGIQ  164 (528)
T ss_pred             cchhHHHHHHhhheeeEEEecccCccHH-HHHHHHHHhh---cCCceEEEeecccccc--CChHHHHHHHHHHhCcc
Confidence            9988878889999999999987632211 1222232222   6899999999999765  23455555666655543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.03  E-value=1.4e-09  Score=93.51  Aligned_cols=163  Identities=20%  Similarity=0.330  Sum_probs=122.0

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..+|+.|+|..++|||.|+.+++.+.+.....+.-  ..+.+++.+++....+.+.|-+|.     ....|...+|++||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdavIf  101 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAVVF  101 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCC-----chhhhhhhccceEE
Confidence            46899999999999999999999998876654432  245577777777777778887772     23346778999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC--CcCCCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVD--MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      ||.+.+..+++.+..+...+..+.. ..+|+++++++.-...  .+........+++.. ..+.||++++.+|.++..+|
T Consensus       102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf  181 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF  181 (749)
T ss_pred             EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence            9999999999998877777654443 5788888887754322  223334444444444 44779999999999999999


Q ss_pred             HHHHHHHHHhhhcc
Q 026548          183 FRLLQEIYGAVSKK  196 (237)
Q Consensus       183 ~~l~~~i~~~~~~~  196 (237)
                      +.++.++.....+.
T Consensus       182 ~~~~~k~i~~~~~q  195 (749)
T KOG0705|consen  182 QEVAQKIVQLRKYQ  195 (749)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999887776554

>cd01900 YchF YchF subfamily

Probab=99.01  E-value=1.7e-09  Score=88.01  Aligned_cols=81  Identities=17%  Similarity=0.136  Sum_probs=58.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEE---------------EEEEEEeCCCcchh----c
Q 026548           31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI---------------IKAQIWDTAGQERY----R   91 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~----~   91 (237)
                      |+++|.||+|||||+|+|++........+..+.+.....+.+.+..               .++.++|+||...-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5799999999999999999988755555666666666666665432               25889999994422    1


Q ss_pred             hhhH---hhhcCCcEEEEEEECC
Q 026548           92 AVTS---AYYRGALGAVVVYDIT  111 (237)
Q Consensus        92 ~~~~---~~~~~~d~~ilv~d~~  111 (237)
                      .+..   ..++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            2222   2357899999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.2e-08  Score=84.91  Aligned_cols=161  Identities=15%  Similarity=0.205  Sum_probs=96.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC---------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh-------
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD---------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY-------   90 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------   90 (237)
                      -.+.++++|+.|.|||||+|.|+...+...         ...+.........+.-+|..++++++||||....       
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            468999999999999999999988744322         1123333334444444777889999999992211       


Q ss_pred             chh-------hHh-----------hh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           91 RAV-------TSA-----------YY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        91 ~~~-------~~~-----------~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      ...       ...           .+  .++|+++|.+..+.. .+..+.-  ..+.... ..+.+|-|+.|+|.....+
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di--~~Mk~l~-~~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDI--EFMKKLS-KKVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhH--HHHHHHh-ccccccceeeccccCCHHH
Confidence            110       111           12  378999999997652 1222110  1122222 3678888899999754332


Q ss_pred             C--CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548          151 V--SAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       151 ~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~  194 (237)
                      +  ..+.+.+.+...++++|.......   +..+....+.+...+|
T Consensus       176 l~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~P  218 (366)
T KOG2655|consen  176 LNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSIP  218 (366)
T ss_pred             HHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcCC
Confidence            2  234455666678888776654433   5555455555555444

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=9.9e-09  Score=86.60  Aligned_cols=153  Identities=16%  Similarity=0.100  Sum_probs=106.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCc---CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFF---FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      -|+..|+-.-|||||++++.+...+   ......++.+........++  ..+.|+|.||++++-......+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            4788999999999999999876543   23345555666555555544  368899999999998888888899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCCCHHHHHHHHHHc---CCeEEEEcCCCCCCHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAVSAEDAVEFAEDQ---GLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~  182 (237)
                      |++.++.-..+..+. +..+ ..  .+++ .+||+||+|..+.. ...+...++...+   ..+++.+|+++|.||+++.
T Consensus        80 vV~~deGl~~qtgEh-L~iL-dl--lgi~~giivltk~D~~d~~-r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk  154 (447)
T COG3276          80 VVAADEGLMAQTGEH-LLIL-DL--LGIKNGIIVLTKADRVDEA-RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELK  154 (447)
T ss_pred             EEeCccCcchhhHHH-HHHH-Hh--cCCCceEEEEeccccccHH-HHHHHHHHHHhhcccccccccccccccCCCHHHHH
Confidence            999976333222211 1112 11  2334 58999999987532 1122233333333   3568999999999999999


Q ss_pred             HHHHHHH
Q 026548          183 FRLLQEI  189 (237)
Q Consensus       183 ~~l~~~i  189 (237)
                      +.|....
T Consensus       155 ~~l~~L~  161 (447)
T COG3276         155 NELIDLL  161 (447)
T ss_pred             HHHHHhh
Confidence            9988877

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=3.9e-09  Score=82.36  Aligned_cols=169  Identities=18%  Similarity=0.203  Sum_probs=101.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh---hHhhhcCCcEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV---TSAYYRGALGA  104 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~d~~  104 (237)
                      ..+|+++|...+||||+.........+-...-...+. ....-.+...-+.+.+||.||+-.+-..   ....++++.++
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTs-ki~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTS-KITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeeccC-cccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            4579999999999999887766655332211000000 0000111223357889999997665432   35678999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCc-CCCH-HHHH-----HHHH----HcCCeEEEEc
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMR-AVSA-EDAV-----EFAE----DQGLFFSEAS  171 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~-~~~~-~~~~-----~~~~----~~~~~~~~~S  171 (237)
                      |+|+|+.+. ..+.+.++...+.+..+  +++.+=|++.|.|...+. .+.. -.+.     +++.    ...+.++.+|
T Consensus       106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS  184 (347)
T KOG3887|consen  106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS  184 (347)
T ss_pred             EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence            999998763 22333333333333222  678888999999965432 1110 0111     1111    1223455565


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhccccc
Q 026548          172 ALNGDNVDTAFFRLLQEIYGAVSKKELE  199 (237)
Q Consensus       172 a~~~~gi~~~~~~l~~~i~~~~~~~~~~  199 (237)
                       ....+|-++|..+++++..+++.-|..
T Consensus       185 -IyDHSIfEAFSkvVQkLipqLptLEnl  211 (347)
T KOG3887|consen  185 -IYDHSIFEAFSKVVQKLIPQLPTLENL  211 (347)
T ss_pred             -ecchHHHHHHHHHHHHHhhhchhHHHH
Confidence             567889999999999999999876543

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.94  E-value=3.7e-08  Score=77.46  Aligned_cols=88  Identities=26%  Similarity=0.207  Sum_probs=65.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-------hhHhhh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-------VTSAYY   98 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~   98 (237)
                      ....+|+++|-|.+|||||+..+...+........++.+..+..+.++|.  .+++.|.||.-.-.+       ......
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavA  137 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVA  137 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEe
Confidence            34579999999999999999999887765554455566677777777774  577999999433222       223456


Q ss_pred             cCCcEEEEEEECCChhh
Q 026548           99 RGALGAVVVYDITKRQS  115 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s  115 (237)
                      +.+|.+++|.|++..+.
T Consensus       138 rtaDlilMvLDatk~e~  154 (364)
T KOG1486|consen  138 RTADLILMVLDATKSED  154 (364)
T ss_pred             ecccEEEEEecCCcchh
Confidence            88999999999987543

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.93  E-value=5.6e-10  Score=88.58  Aligned_cols=152  Identities=16%  Similarity=0.116  Sum_probs=85.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC------CC-----cCCCCCCc---------------ceeEEEEEEEECC-----
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN------EF-----FFDSKSTI---------------GVEFQTRTVTING-----   74 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~------~~-----~~~~~~~~---------------~~~~~~~~~~~~~-----   74 (237)
                      .+...|.|-|+||+|||||+++|...      ++     ++.+..+-               ....+.+.+--.|     
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            35679999999999999999987532      11     11111000               0112222221111     


Q ss_pred             -------------EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 026548           75 -------------KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN  141 (237)
Q Consensus        75 -------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~n  141 (237)
                                   ..+.++|+.|.|--+...   ....-+|.+++|+.....+..+-++.-+-++.        =++|+|
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVN  175 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVN  175 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEe
Confidence                         115577888877443333   23566999999999877666655544444432        289999


Q ss_pred             CCCCCCCcCCCHHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          142 KSDLVDMRAVSAEDAVEFAED-------QGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       142 K~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      |+|....... ..+.......       |..+++.|||.++.|++++++.|.++-
T Consensus       176 KaD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  176 KADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             --SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            9996542211 1122222221       235799999999999999998887754

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.93  E-value=1.6e-08  Score=81.58  Aligned_cols=157  Identities=16%  Similarity=0.115  Sum_probs=94.3

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCC-----------CcCCCCCCcc---------------eeEEEEEEEE----
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNE-----------FFFDSKSTIG---------------VEFQTRTVTI----   72 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~-----------~~~~~~~~~~---------------~~~~~~~~~~----   72 (237)
                      ....+...|.+-|.||+|||||+.+|...-           +++.+..+-+               ...+.+...-    
T Consensus        46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l  125 (323)
T COG1703          46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL  125 (323)
T ss_pred             hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence            344556789999999999999999875321           1222211110               1111111111    


Q ss_pred             --------------CCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEE
Q 026548           73 --------------NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIIL  138 (237)
Q Consensus        73 --------------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vv  138 (237)
                                    +...+.++|+.|.|--+...   ....-+|.+++|.-..-.+..+-++.-+-++..        ++
T Consensus       126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~  194 (323)
T COG1703         126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------II  194 (323)
T ss_pred             hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------ee
Confidence                          11235677888887544443   234558999988877777766666654444443        79


Q ss_pred             EEeCCCCCCCcCC--CHHHHHHHHH------HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          139 IGNKSDLVDMRAV--SAEDAVEFAE------DQGLFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       139 v~nK~D~~~~~~~--~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      |+||.|..+....  ....+.++..      .|.-+++.+||..|.|++++++.+.++.-
T Consensus       195 vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         195 VINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             eEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            9999996442111  0111222221      23356999999999999999988877643

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.90  E-value=3.5e-09  Score=86.22  Aligned_cols=55  Identities=20%  Similarity=0.220  Sum_probs=40.4

Q ss_pred             CcEEEEEeCCCCCCCcCCCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          134 IRIILIGNKSDLVDMRAVSAEDAVEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       134 ~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      ..-++|+||+|+........+...+..+..  +.+++.+|+++|.|++++++||.+.
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            456999999999753222344444444443  4779999999999999999988763

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=3.4e-08  Score=79.31  Aligned_cols=138  Identities=20%  Similarity=0.189  Sum_probs=91.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC----------------CCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN----------------EFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY   90 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   90 (237)
                      ..++|..+|...-|||||..++..-                +.+......++++....++......  +-..|+||+..|
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rh--yahVDcPGHaDY   88 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRH--YAHVDCPGHADY   88 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCce--EEeccCCChHHH
Confidence            3689999999999999999887431                1111222333444444444444443  558999999999


Q ss_pred             chhhHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC---CHHHHHHHHHHc
Q 026548           91 RAVTSAYYRGALGAVVVYDITK---RQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV---SAEDAVEFAEDQ  163 (237)
Q Consensus        91 ~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~  163 (237)
                      -.....-..++|+.|+|+++++   +++-+.+    ...+.   -++| +++++||+|+.++.+.   -..+++++...+
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y  161 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY  161 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence            8877667788999999999998   4443332    11111   3665 6688999999875432   234577777777


Q ss_pred             CC-----eEEEEcCC
Q 026548          164 GL-----FFSEASAL  173 (237)
Q Consensus       164 ~~-----~~~~~Sa~  173 (237)
                      ++     |++.-||.
T Consensus       162 ~f~gd~~Pii~gSal  176 (394)
T COG0050         162 GFPGDDTPIIRGSAL  176 (394)
T ss_pred             CCCCCCcceeechhh
Confidence            65     46666664

>PRK12289 GTPase RsgA; Reviewed

Probab=98.86  E-value=2.1e-08  Score=84.57  Aligned_cols=92  Identities=15%  Similarity=0.157  Sum_probs=67.5

Q ss_pred             hhhHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEE
Q 026548           92 AVTSAYYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEA  170 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .+....+.++|.+++|+|+.++. ....+.+|+..+..   .++|++||+||+|+....+  .+...+....+++.++.+
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence            34445688999999999998765 44456677665533   4799999999999964221  122233345678899999


Q ss_pred             cCCCCCCHHHHHHHHHHH
Q 026548          171 SALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       171 Sa~~~~gi~~~~~~l~~~  188 (237)
                      ||+++.|++++++.+...
T Consensus       156 SA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        156 SVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EcCCCCCHHHHhhhhccc
Confidence            999999999999887654

>cd01859 MJ1464 MJ1464

Probab=98.86  E-value=1.3e-08  Score=76.23  Aligned_cols=95  Identities=13%  Similarity=0.069  Sum_probs=65.0

Q ss_pred             hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEE
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSE  169 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  169 (237)
                      ++.++...++++|++|+|+|++++...... .+...+..   .+.|+++|+||+|+.....  .+....+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~---~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE---LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh---CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence            456677888899999999999875432221 22222221   3689999999999854211  11122333445678999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHH
Q 026548          170 ASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       170 ~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      +||+++.|++++++.+.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999988877654

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=98.86  E-value=2.1e-08  Score=77.68  Aligned_cols=94  Identities=21%  Similarity=0.132  Sum_probs=65.6

Q ss_pred             hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHH-----HHcC
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFA-----EDQG  164 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~  164 (237)
                      +..++..+++++|++++|+|+++....     |...+.... .+.|+++|+||+|+.... ...+....+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence            577788889999999999999875421     222222111 468999999999986432 2233343443     2333


Q ss_pred             C---eEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          165 L---FFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       165 ~---~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      .   .++.+||+++.|++++++.|.+.+.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3   5899999999999999998887653

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.83  E-value=6.4e-08  Score=83.29  Aligned_cols=122  Identities=16%  Similarity=0.242  Sum_probs=82.2

Q ss_pred             EEEEEEE-CCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh-------hhHHHHHHHHHHHHHhcC----CC
Q 026548           66 QTRTVTI-NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR-------QSFDHVARWVEELRAHAD----SS  133 (237)
Q Consensus        66 ~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~-------~s~~~~~~~~~~~~~~~~----~~  133 (237)
                      ....+.+ .+  ..+.++|++|+...+..|..++.+++++|||+++++-       ....++..-+..+.....    .+
T Consensus       226 ~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~  303 (389)
T PF00503_consen  226 TEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKN  303 (389)
T ss_dssp             EEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred             eEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccccc
Confidence            3334445 44  4678999999999999999999999999999998751       122334333333333222    57


Q ss_pred             CcEEEEEeCCCCCC------C----------cC--CCHHHHHHHHHH------------cCCeEEEEcCCCCCCHHHHHH
Q 026548          134 IRIILIGNKSDLVD------M----------RA--VSAEDAVEFAED------------QGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       134 ~p~vvv~nK~D~~~------~----------~~--~~~~~~~~~~~~------------~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      .|++|++||.|+..      .          ..  -..+.+.++...            ..+.++.|+|.+...+..+|+
T Consensus       304 ~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~  383 (389)
T PF00503_consen  304 TPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFN  383 (389)
T ss_dssp             SEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHH
T ss_pred             CceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHH
Confidence            99999999999622      1          01  244566665542            123467889999999999998


Q ss_pred             HHHHHH
Q 026548          184 RLLQEI  189 (237)
Q Consensus       184 ~l~~~i  189 (237)
                      .+.+.|
T Consensus       384 ~v~~~i  389 (389)
T PF00503_consen  384 AVKDII  389 (389)
T ss_dssp             HHHHHH
T ss_pred             HhcCcC
Confidence            887654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=5.5e-08  Score=80.40  Aligned_cols=124  Identities=18%  Similarity=0.218  Sum_probs=84.0

Q ss_pred             CCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEE------CCEE-----------------
Q 026548           21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTI------NGKI-----------------   76 (237)
Q Consensus        21 ~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~-----------------   76 (237)
                      .....+...=|+++|.-..||||||+-|+...++.... +..++++....+.-      +|..                 
T Consensus        51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~  130 (532)
T KOG1954|consen   51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN  130 (532)
T ss_pred             cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence            33556667789999999999999999999999875433 33333443332221      2211                 


Q ss_pred             ----------------EEEEEEeCCCcc-----------hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHh
Q 026548           77 ----------------IKAQIWDTAGQE-----------RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAH  129 (237)
Q Consensus        77 ----------------~~~~l~Dt~G~~-----------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~  129 (237)
                                      -.+.++||||.-           .|.....-|+.++|.+|++||+...+--++....+..++.+
T Consensus       131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~  210 (532)
T KOG1954|consen  131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH  210 (532)
T ss_pred             HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence                            237799999922           23344556789999999999987655445555555665553


Q ss_pred             cCCCCcEEEEEeCCCCCC
Q 026548          130 ADSSIRIILIGNKSDLVD  147 (237)
Q Consensus       130 ~~~~~p~vvv~nK~D~~~  147 (237)
                         .-.+-||+||+|+.+
T Consensus       211 ---EdkiRVVLNKADqVd  225 (532)
T KOG1954|consen  211 ---EDKIRVVLNKADQVD  225 (532)
T ss_pred             ---cceeEEEeccccccC
Confidence               445778999999865

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.81  E-value=7.5e-08  Score=75.23  Aligned_cols=146  Identities=18%  Similarity=0.270  Sum_probs=82.1

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC---------CCCcceeEEEEEEEECCEEEEEEEEeCCCcch-------
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS---------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQER-------   89 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------   89 (237)
                      ...++|+|+|..|.|||||+|.|...++....         ..|.........+.-++-..++.++||||...       
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            44689999999999999999999866543311         11222222222233367677899999999221       


Q ss_pred             -----------hchhhH--------hhh--cCCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCC-
Q 026548           90 -----------YRAVTS--------AYY--RGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLV-  146 (237)
Q Consensus        90 -----------~~~~~~--------~~~--~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~-  146 (237)
                                 |.....        ..+  .+++.++|.+..+. .++..+. .++..+.+    -+.+|-|+-|+|-. 
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlT  198 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLT  198 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeeccccc
Confidence                       111111        111  36677888887764 2233221 22222222    34577788899943 


Q ss_pred             -CCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548          147 -DMRAVSAEDAVEFAEDQGLFFSEASALNGD  176 (237)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  176 (237)
                       +++..-.+.+++-...+++.++.-...+-+
T Consensus       199 leEr~~FkqrI~~el~~~~i~vYPq~~fded  229 (336)
T KOG1547|consen  199 LEERSAFKQRIRKELEKHGIDVYPQDSFDED  229 (336)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccccccccccc
Confidence             222222334555556678877665544433

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.6e-07  Score=83.13  Aligned_cols=144  Identities=15%  Similarity=0.152  Sum_probs=90.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEE--------------------------------------
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQT--------------------------------------   67 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------   67 (237)
                      +..-||++.|..++||||++|+++..++-+......+.-+..                                      
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            345699999999999999999998776655443222111100                                      


Q ss_pred             -----EEEEECCEE-----EEEEEEeCCCcc---hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC
Q 026548           68 -----RTVTINGKI-----IKAQIWDTAGQE---RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSI  134 (237)
Q Consensus        68 -----~~~~~~~~~-----~~~~l~Dt~G~~---~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~  134 (237)
                           ..+.++...     -.+.++|.||.+   ....-...+...+|++|+|.++.+..+....    +.+......+.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek----~Ff~~vs~~Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK----QFFHKVSEEKP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH----HHHHHhhccCC
Confidence                 000111110     025689999944   3444556778899999999999876655443    33344443455


Q ss_pred             cEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC--------eEEEEcCC
Q 026548          135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGL--------FFSEASAL  173 (237)
Q Consensus       135 p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~  173 (237)
                      .++|+.||+|.........++++.....++.        .+|+||++
T Consensus       263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence            6788889999876655556666655444332        37888865

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.77  E-value=3.5e-08  Score=81.35  Aligned_cols=87  Identities=20%  Similarity=0.145  Sum_probs=67.3

Q ss_pred             hhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCC
Q 026548           96 AYYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN  174 (237)
Q Consensus        96 ~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  174 (237)
                      ..+.++|.+++|+|++++. ++..+.+|+..+..   .++|+++|+||+|+.....  ...........+.+++.+||++
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~  148 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKT  148 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCC
Confidence            3578999999999999887 77888888876654   4689999999999865311  1122333455788999999999


Q ss_pred             CCCHHHHHHHHHH
Q 026548          175 GDNVDTAFFRLLQ  187 (237)
Q Consensus       175 ~~gi~~~~~~l~~  187 (237)
                      +.|+++++..+..
T Consensus       149 g~gi~~L~~~L~~  161 (287)
T cd01854         149 GEGLDELREYLKG  161 (287)
T ss_pred             CccHHHHHhhhcc
Confidence            9999998877664

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.74  E-value=5.5e-08  Score=81.98  Aligned_cols=88  Identities=16%  Similarity=0.187  Sum_probs=67.6

Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC-CHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548           98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV-SAEDAVEFAEDQGLFFSEASALNGD  176 (237)
Q Consensus        98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  176 (237)
                      ..++|.+++|+++....++..+..|+..+..   .++|++||+||+|+....+. ......+.....+++++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999888899999999875543   47899999999999653211 1222333445678899999999999


Q ss_pred             CHHHHHHHHHHH
Q 026548          177 NVDTAFFRLLQE  188 (237)
Q Consensus       177 gi~~~~~~l~~~  188 (237)
                      |++++++.|...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999888653

>PRK00098 GTPase RsgA; Reviewed

Probab=98.73  E-value=4.8e-08  Score=80.98  Aligned_cols=87  Identities=23%  Similarity=0.214  Sum_probs=64.9

Q ss_pred             hhcCCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548           97 YYRGALGAVVVYDITKRQSFDH-VARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG  175 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  175 (237)
                      .+.++|.+++|+|+.++..... +.+|+..+..   .++|++||+||+|+..... ..+...+.....+++++++||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4689999999999988765444 4677666544   4799999999999963221 122344455667889999999999


Q ss_pred             CCHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQ  187 (237)
Q Consensus       176 ~gi~~~~~~l~~  187 (237)
                      .|+++++..+..
T Consensus       153 ~gi~~L~~~l~g  164 (298)
T PRK00098        153 EGLDELKPLLAG  164 (298)
T ss_pred             ccHHHHHhhccC
Confidence            999998877643

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.72  E-value=4e-08  Score=74.78  Aligned_cols=58  Identities=26%  Similarity=0.383  Sum_probs=40.9

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      ....++++|+|.||+|||||+|+|.+....... +..+.+.....+.++.   .+.++||||
T Consensus       114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             cccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence            344689999999999999999999987754432 2233333344444443   477999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.70  E-value=4.2e-08  Score=72.28  Aligned_cols=54  Identities=20%  Similarity=0.280  Sum_probs=39.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ   87 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   87 (237)
                      +++++|.+|+|||||+|+|.+....... ...+.+.....+.+++   .+.||||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence            8999999999999999999988765332 2223334445555554   4679999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.70  E-value=8.9e-08  Score=76.38  Aligned_cols=156  Identities=15%  Similarity=0.135  Sum_probs=93.2

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCC----------cchhc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAG----------QERYR   91 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~   91 (237)
                      -+.+..++++++|..|+|||+|+|-++..+...... +..+.+.....+.+..   .+.+.|.||          ...+.
T Consensus       131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~  207 (320)
T KOG2486|consen  131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWD  207 (320)
T ss_pred             CCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHh
Confidence            345677899999999999999999998876544332 2444444444444443   567999999          22334


Q ss_pred             hhhHhhhc---CCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC----CCHHHHHH----
Q 026548           92 AVTSAYYR---GALGAVVVYDITKRQ--SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA----VSAEDAVE----  158 (237)
Q Consensus        92 ~~~~~~~~---~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~----~~~~~~~~----  158 (237)
                      .+...|+.   +---+++++|++-+-  .-.....|+.+      .++|+.+|+||+|......    .....+..    
T Consensus       208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~  281 (320)
T KOG2486|consen  208 KFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQG  281 (320)
T ss_pred             HhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhh
Confidence            44444442   222356666766521  11222344443      5899999999999643211    11111111    


Q ss_pred             HH---HHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          159 FA---EDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       159 ~~---~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      +.   .....+.+.+|+.++.|++.++..+.+
T Consensus       282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ccccceeccCCceeeecccccCceeeeeehhh
Confidence            11   112345667999999999987765544

>cd01858 NGP_1 NGP-1

Probab=98.67  E-value=7.9e-08  Score=72.15  Aligned_cols=56  Identities=21%  Similarity=0.218  Sum_probs=38.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      ..++|+++|.+|+|||||+|+|.+........ ..+.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEEcCC---CEEEEECcC
Confidence            35789999999999999999999876544332 222333333344433   256999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00092 GTP-binding protein YchF

Probab=98.61  E-value=1.7e-07  Score=78.95  Aligned_cols=83  Identities=17%  Similarity=-0.015  Sum_probs=61.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCC-cCCCCCCcceeEEEEEEEECCE---------------EEEEEEEeCCCcchh--
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEF-FFDSKSTIGVEFQTRTVTINGK---------------IIKAQIWDTAGQERY--   90 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~--   90 (237)
                      ++++++|.|++|||||+++|++... .....|..+.......+.+++.               +..+.+.|.||...-  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            6899999999999999999999887 5444466555666666666542               135789999995432  


Q ss_pred             -----chhhHhhhcCCcEEEEEEECC
Q 026548           91 -----RAVTSAYYRGALGAVVVYDIT  111 (237)
Q Consensus        91 -----~~~~~~~~~~~d~~ilv~d~~  111 (237)
                           ....-..++.+|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                 122334578999999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.61  E-value=1.1e-07  Score=77.72  Aligned_cols=86  Identities=16%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCE---------------EEEEEEEeCCCcchh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---------------IIKAQIWDTAGQERY   90 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~   90 (237)
                      .+.+++.+||-|++|||||+|+|.+....+...|..+++.....+.+...               +..+.++|++|.-.-
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            36789999999999999999999999988777788888877777666432               346889999984332


Q ss_pred             c----hhh---HhhhcCCcEEEEEEECC
Q 026548           91 R----AVT---SAYYRGALGAVVVYDIT  111 (237)
Q Consensus        91 ~----~~~---~~~~~~~d~~ilv~d~~  111 (237)
                      .    .+-   -.-++.+|+++.|+++-
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEec
Confidence            2    222   23458899999998854

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.61  E-value=2.3e-07  Score=78.88  Aligned_cols=95  Identities=22%  Similarity=0.288  Sum_probs=69.3

Q ss_pred             cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH----HHHH
Q 026548           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE----FAED  162 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~----~~~~  162 (237)
                      .+.|..+...+.+.++++++|+|+.+..     ..|...+.... .+.|+++|+||+|+... ....+...+    +++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            5678888888889999999999997643     22334444433 26799999999998643 333444443    4556


Q ss_pred             cCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 026548          163 QGL---FFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       163 ~~~---~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      .++   .++.+||+++.|++++|..+.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   38999999999999999888653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.60  E-value=4.4e-07  Score=87.84  Aligned_cols=114  Identities=22%  Similarity=0.264  Sum_probs=71.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCC----CC--CcceeEEEEEEEECCEEEEEEEEeCCC----cc----hhchhh
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDS----KS--TIGVEFQTRTVTINGKIIKAQIWDTAG----QE----RYRAVT   94 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~----~~~~~~   94 (237)
                      .=.+|+|++|+||||+++.- +..++...    ..  .++.+. .....+.+.   -.++||+|    ++    .....|
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W  186 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAW  186 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCC---EEEEcCCCccccCCCcccccHHHH
Confidence            45789999999999999875 44443321    01  111111 112223333   34999999    21    223345


Q ss_pred             Hhhh---------cCCcEEEEEEECCChh---------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           95 SAYY---------RGALGAVVVYDITKRQ---------SFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        95 ~~~~---------~~~d~~ilv~d~~~~~---------s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      ..++         +..+++|+++|+.+.-         .-..++..+.++....+..+|+.|++||+|+..
T Consensus       187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            5444         4579999999987621         113455666777777778899999999999864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.60  E-value=1.2e-06  Score=72.99  Aligned_cols=151  Identities=17%  Similarity=0.148  Sum_probs=91.9

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCC--------------cceeEEEEEEEECC-E--------------
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST--------------IGVEFQTRTVTING-K--------------   75 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~--------------   75 (237)
                      .+..+.|.+.|+.+.|||||+-.|..+..+...-.+              .+.+.+...+-+++ +              
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            445788999999999999999888765544332111              12222222222221 1              


Q ss_pred             ------EEEEEEEeCCCcchhchhhHh-h-hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           76 ------IIKAQIWDTAGQERYRAVTSA-Y-YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        76 ------~~~~~l~Dt~G~~~~~~~~~~-~-~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                            +-.+.|.||.|++.|-..... + -...|..++++.+++.-+-.. +.. ..+...  -+.|++|++||+|+..
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEH-Lgi~~a--~~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEH-LGIALA--MELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHh-hhhhhh--hcCCEEEEEEecccCc
Confidence                  123679999999998665433 3 367899999999988543211 111 112222  4799999999999865


Q ss_pred             CcCC--CHHHHHHH----------------------HHHcC---CeEEEEcCCCCCCHH
Q 026548          148 MRAV--SAEDAVEF----------------------AEDQG---LFFSEASALNGDNVD  179 (237)
Q Consensus       148 ~~~~--~~~~~~~~----------------------~~~~~---~~~~~~Sa~~~~gi~  179 (237)
                      +..+  ..+++..+                      +.+.+   +|+|.+|+.+|+|++
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld  328 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD  328 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH
Confidence            3211  11122111                      11222   479999999999987

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.54  E-value=3.5e-07  Score=75.47  Aligned_cols=58  Identities=21%  Similarity=0.349  Sum_probs=41.6

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ   87 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   87 (237)
                      ...++++|+|.||+|||||+|+|.+....... +..+.+.....+.++.   .+.|+||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            45689999999999999999999988754332 2233334444455544   4679999995

>cd01856 YlqF YlqF

Probab=98.53  E-value=3e-07  Score=70.03  Aligned_cols=58  Identities=22%  Similarity=0.277  Sum_probs=40.9

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ   87 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   87 (237)
                      ...++++++|.+|+|||||+|+|.+..+.... ...+.+.....+.++   ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            34579999999999999999999987764322 222334444445554   24679999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.51  E-value=3.6e-07  Score=74.99  Aligned_cols=57  Identities=19%  Similarity=0.325  Sum_probs=41.0

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ   87 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   87 (237)
                      ..++++|+|.||+|||||+|+|.+....... ...+.+.....+.++.   .+.|+||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence            4689999999999999999999987754432 2223334444555543   3679999995

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.50  E-value=3.1e-07  Score=72.73  Aligned_cols=114  Identities=16%  Similarity=0.180  Sum_probs=74.8

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCC-------hhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCC
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK-------RQSFDHVARWVEELRAHA----DSSIRIILIGNKSDL  145 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~-------~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~  145 (237)
                      +.++.+|.+|+...+..|...+..+.++|+|+..+.       ..+..+++..+..+...-    ...+.+|+++||-|+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            678999999999999999999999999999998775       112233333333322211    135779999999997


Q ss_pred             CCC------------------------------cCCCHHHHHHHHH-------------HcCCeEEEEcCCCCCCHHHHH
Q 026548          146 VDM------------------------------RAVSAEDAVEFAE-------------DQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       146 ~~~------------------------------~~~~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      ...                              +....-.++.|.+             ++-+.+.++.|.+..+|..+|
T Consensus       282 laeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVF  361 (379)
T KOG0099|consen  282 LAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF  361 (379)
T ss_pred             HHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHH
Confidence            431                              0000111222222             122456778899999999999


Q ss_pred             HHHHHHHH
Q 026548          183 FRLLQEIY  190 (237)
Q Consensus       183 ~~l~~~i~  190 (237)
                      +...+.|.
T Consensus       362 nDcrdiIq  369 (379)
T KOG0099|consen  362 NDCRDIIQ  369 (379)
T ss_pred             HHHHHHHH
Confidence            97666554

>cd01855 YqeH YqeH

Probab=98.50  E-value=2.5e-07  Score=71.62  Aligned_cols=56  Identities=21%  Similarity=0.345  Sum_probs=38.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcC-------CCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFF-------DSKSTIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      ..+++++|.+|+|||||+|+|.+.....       ......+++.....+.++.   .+.|+||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            3589999999999999999999754311       1122223444555555543   367999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=2e-07  Score=78.24  Aligned_cols=121  Identities=20%  Similarity=0.213  Sum_probs=91.4

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCC--------CcCCCC--------CCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNE--------FFFDSK--------STIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      +......+|.++..-.+||||.-.+++...        ++....        ...+++.....++++.+.+++.++||||
T Consensus        32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg  111 (753)
T KOG0464|consen   32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG  111 (753)
T ss_pred             CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence            444556789999999999999999886422        111111        1224556666777777778899999999


Q ss_pred             cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      +..|+-...+.++-.|+++.|||++..-..+.+..|...    .+.++|...++||+|...
T Consensus       112 hvdf~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  112 HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             cceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhh
Confidence            999999999999999999999999876555555556543    235899999999999754

>cd01859 MJ1464 MJ1464

Probab=98.47  E-value=6.1e-07  Score=67.18  Aligned_cols=56  Identities=29%  Similarity=0.290  Sum_probs=39.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      ...+++++|.+|+|||||+|+|.+..... ..++.+.+.....+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            45789999999999999999999765332 234444444333344443   477999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=98.43  E-value=1e-06  Score=66.13  Aligned_cols=88  Identities=18%  Similarity=0.100  Sum_probs=56.4

Q ss_pred             hhcCCcEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCC
Q 026548           97 YYRGALGAVVVYDITKRQS--FDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN  174 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  174 (237)
                      .+..+|++++|+|+.++..  ...+..++   ... ..+.|+++|+||+|+..+... ......+...+....+.+||+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHH---Hhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence            4678999999999998632  22333332   222 245899999999998642211 1112222222223357799999


Q ss_pred             CCCHHHHHHHHHHHH
Q 026548          175 GDNVDTAFFRLLQEI  189 (237)
Q Consensus       175 ~~gi~~~~~~l~~~i  189 (237)
                      +.|++++++.+.+.+
T Consensus        80 ~~~~~~L~~~l~~~~   94 (157)
T cd01858          80 PFGKGSLIQLLRQFS   94 (157)
T ss_pred             cccHHHHHHHHHHHH
Confidence            999999988886653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=3.1e-06  Score=73.79  Aligned_cols=115  Identities=14%  Similarity=0.177  Sum_probs=73.4

Q ss_pred             cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEE-ECCEEEEEEEEeCCCcchhchhhHhhh
Q 026548           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVT-INGKIIKAQIWDTAGQERYRAVTSAYY   98 (237)
Q Consensus        20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~   98 (237)
                      +.+...++.+=++|+|+||+||||||+.|+.+..........      ..++ +.|..-++.+..+|  ..... .....
T Consensus        61 rtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~------GPiTvvsgK~RRiTflEcp--~Dl~~-miDva  131 (1077)
T COG5192          61 RTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIR------GPITVVSGKTRRITFLECP--SDLHQ-MIDVA  131 (1077)
T ss_pred             CCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccC------CceEEeecceeEEEEEeCh--HHHHH-HHhHH
Confidence            455666777889999999999999999988654221111111      1111 34555678899998  23333 23456


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVD  147 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~  147 (237)
                      +-+|++++++|.+-....+.+ .+++.+..   ++.| ++-|+|..|+..
T Consensus       132 KIaDLVlLlIdgnfGfEMETm-EFLnil~~---HGmPrvlgV~ThlDlfk  177 (1077)
T COG5192         132 KIADLVLLLIDGNFGFEMETM-EFLNILIS---HGMPRVLGVVTHLDLFK  177 (1077)
T ss_pred             HhhheeEEEeccccCceehHH-HHHHHHhh---cCCCceEEEEeeccccc
Confidence            789999999998754333222 33444444   4666 557889999865

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.41  E-value=5.8e-07  Score=75.23  Aligned_cols=57  Identities=23%  Similarity=0.307  Sum_probs=43.5

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ   87 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   87 (237)
                      ..++++|+|-||+|||||||+|.+....... +..+.+.....+.+...   +.|+||||-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCc
Confidence            3578999999999999999999999874433 33355566666666553   679999993

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=1.5e-06  Score=72.11  Aligned_cols=149  Identities=21%  Similarity=0.280  Sum_probs=90.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-----------------------CCcceeEEEEEEEECC----------
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-----------------------STIGVEFQTRTVTING----------   74 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~----------   74 (237)
                      .++++|+|.-.+|||||+-.|..+..+...-                       ...+++-.-+.+++..          
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            5899999999999999998776554332110                       1111111111111111          


Q ss_pred             EEEEEEEEeCCCcchhchhhHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--
Q 026548           75 KIIKAQIWDTAGQERYRAVTSAYYR--GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA--  150 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--  150 (237)
                      ...-+.++|.+|+.+|.......+.  -.|..++|++++..-++..- ..+..+..   .++|++|+++|+|+.....  
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~A---L~iPfFvlvtK~Dl~~~~~~~  322 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIAA---LNIPFFVLVTKMDLVDRQGLK  322 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHHH---hCCCeEEEEEeeccccchhHH
Confidence            1123779999999999876655443  34778899998875444322 22222222   4799999999999865311  


Q ss_pred             ----------------------CCHHHHHHHHHHc----CCeEEEEcCCCCCCHHH
Q 026548          151 ----------------------VSAEDAVEFAEDQ----GLFFSEASALNGDNVDT  180 (237)
Q Consensus       151 ----------------------~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~  180 (237)
                                            .+.+++...+.+.    =.|+|.+|+.+|+|++-
T Consensus       323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l  378 (591)
T KOG1143|consen  323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL  378 (591)
T ss_pred             HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence                                  1223333333322    24789999999999873

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.41  E-value=1.5e-06  Score=64.97  Aligned_cols=85  Identities=16%  Similarity=0.091  Sum_probs=55.1

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      |++++|+|+.++.+...  .++.. ......++|+++|+||+|+...... .+...++....+..++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999988755432  12221 1111247899999999998542111 11112233334566899999999999999


Q ss_pred             HHHHHHHHH
Q 026548          182 FFRLLQEIY  190 (237)
Q Consensus       182 ~~~l~~~i~  190 (237)
                      ++.+.+...
T Consensus        77 ~~~i~~~~~   85 (155)
T cd01849          77 ESAFTKQTN   85 (155)
T ss_pred             HHHHHHHhH
Confidence            988877643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.41  E-value=3.6e-05  Score=56.93  Aligned_cols=146  Identities=18%  Similarity=0.207  Sum_probs=77.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCC-Ccc--------------hh-
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA-GQE--------------RY-   90 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~--------------~~-   90 (237)
                      ..+||.+-|+||+||||++.++.+.-....+. .  --+...++.-+|..+-|.+.|+. |..              +| 
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k-v--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYK-V--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCce-e--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            35799999999999999999876432211111 1  12334445556777777777766 311              11 


Q ss_pred             ----------chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHH
Q 026548           91 ----------RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFA  160 (237)
Q Consensus        91 ----------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~  160 (237)
                                .......+..+|  ++++|--.+..+.. ..+...+......+.|++.++.+.+..      + ..+++ 
T Consensus        81 V~v~~le~i~~~al~rA~~~aD--vIIIDEIGpMElks-~~f~~~ve~vl~~~kpliatlHrrsr~------P-~v~~i-  149 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEAD--VIIIDEIGPMELKS-KKFREAVEEVLKSGKPLIATLHRRSRH------P-LVQRI-  149 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCC--EEEEecccchhhcc-HHHHHHHHHHhcCCCcEEEEEecccCC------h-HHHHh-
Confidence                      111223345566  55567444433221 233344444444678888888766531      1 23333 


Q ss_pred             HHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          161 EDQGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       161 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      +..+..++++   +..|=+.+++.+...+
T Consensus       150 k~~~~v~v~l---t~~NR~~i~~~Il~~L  175 (179)
T COG1618         150 KKLGGVYVFL---TPENRNRILNEILSVL  175 (179)
T ss_pred             hhcCCEEEEE---ccchhhHHHHHHHHHh
Confidence            3344333334   3334446666665544

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=1.2e-06  Score=78.45  Aligned_cols=115  Identities=17%  Similarity=0.282  Sum_probs=82.2

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcC--------------CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFF--------------DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE   88 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   88 (237)
                      ...+...+|+++.+..=|||||...|+..+-..              ....+.+++.....+..-..++.+.|+|+|||-
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence            345567799999999999999999987543211              112333444444445444455789999999999


Q ss_pred             hhchhhHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548           89 RYRAVTSAYYRGALGAVVVYDITKR---QSFDHVARWVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus        89 ~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                      .|.+......+-+|++++++|+...   ++..-++.    ...   .+...++|+||+|
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq----~~~---~~~~~~lvinkid  135 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQ----AWI---EGLKPILVINKID  135 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHH----HHH---ccCceEEEEehhh
Confidence            9999999999999999999999873   33333322    111   2456789999999

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.40  E-value=4e-06  Score=72.23  Aligned_cols=85  Identities=14%  Similarity=-0.017  Sum_probs=49.9

Q ss_pred             EEEEEEeCCCcchhchhh----Hhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           77 IKAQIWDTAGQERYRAVT----SAY--YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      +.+.|+||+|........    ..+  ....|.+++|+|+.-.+...+..   ..|...   -.+.-+|+||.|...   
T Consensus       183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~---~~~~g~IlTKlD~~a---  253 (429)
T TIGR01425       183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS---VDVGSVIITKLDGHA---  253 (429)
T ss_pred             CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc---cCCcEEEEECccCCC---
Confidence            578899999955433211    111  23467899999987643332222   223221   235678999999743   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 026548          151 VSAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~S  171 (237)
                       ..-.+.......+.|+.+++
T Consensus       254 -rgG~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       254 -KGGGALSAVAATKSPIIFIG  273 (429)
T ss_pred             -CccHHhhhHHHHCCCeEEEc
Confidence             22245566667777766655

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.38  E-value=2.7e-07  Score=68.91  Aligned_cols=59  Identities=19%  Similarity=0.210  Sum_probs=33.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCC------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFD------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      .++++|++|+|||||+|.|........      ......++.....+.+++..   .|+||||...+.
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~  101 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG  101 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence            689999999999999999998743221      11111222233445554433   499999965543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.37  E-value=1.3e-06  Score=65.45  Aligned_cols=56  Identities=23%  Similarity=0.308  Sum_probs=38.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      ....+++++|.+|+|||||+|.|.+..... ...+..+...  ..+..+.   .+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~~---~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLDN---KIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEecC---CEEEEECCC
Confidence            346889999999999999999999876432 2223333333  2333332   477999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.36  E-value=1.1e-05  Score=70.24  Aligned_cols=136  Identities=13%  Similarity=0.120  Sum_probs=75.7

Q ss_pred             EEEEEeCCCc-------------chhchhhHhhhcCCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 026548           78 KAQIWDTAGQ-------------ERYRAVTSAYYRGALGAVVVYDITKRQSF-DHVARWVEELRAHADSSIRIILIGNKS  143 (237)
Q Consensus        78 ~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~vvv~nK~  143 (237)
                      +..|.|.||.             +..-.+...+..+.+++|+|+--..-++- ..+.....   .....+...|+|++|.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVs---q~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVS---QMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHH---hcCCCCCeeEEEEeec
Confidence            4679999992             22334566788999999999854332221 12222222   2222577899999999


Q ss_pred             CCCCCcCCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHHHHHHHHHHhhhccccccCCCccCCCCCCCCCcccc
Q 026548          144 DLVDMRAVSAEDAVEFAEDQG-----LFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDV  218 (237)
Q Consensus       144 D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (237)
                      |+.+..-.++..++++....=     ..||.+-.=.|.. .+..++ ++.+.+.+=........+ .--|++...+.+.+
T Consensus       490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGns-sdSIda-IR~YEE~FF~nSkLl~~~-vlkphQvTtRNlSL  566 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNS-SESIEA-IREYEEEFFQNSKLLKTS-MLKAHQVTTRNLSL  566 (980)
T ss_pred             chhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCc-chhHHH-HHHHHHHHhhhhHHHHhh-ccchhhhcccchhH
Confidence            999887788888888876422     2255553222222 222222 333333333333222222 23356666666655


Q ss_pred             c
Q 026548          219 I  219 (237)
Q Consensus       219 ~  219 (237)
                      +
T Consensus       567 A  567 (980)
T KOG0447|consen  567 A  567 (980)
T ss_pred             H
Confidence            4

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.36  E-value=1.1e-06  Score=73.16  Aligned_cols=144  Identities=17%  Similarity=0.197  Sum_probs=81.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcC----------------C--CCCCcceeE--------------------EEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFF----------------D--SKSTIGVEF--------------------QTRT   69 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~----------------~--~~~~~~~~~--------------------~~~~   69 (237)
                      .++|+|+|...+|||||+-.|.....+.                .  ..+.++.+.                    ....
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            5899999999999999996554433211                1  111111111                    0001


Q ss_pred             EEECCEEEEEEEEeCCCcchhchhhHhh--hcCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548           70 VTINGKIIKAQIWDTAGQERYRAVTSAY--YRGALGAVVVYDITKR---QSFDHVARWVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus        70 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~--~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                      +. .+....+.|+|.+|++.|-...-.-  -+..|...+++-++..   .+-+.+    .....   ..+|++||++|+|
T Consensus       213 Ic-e~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHL----gLALa---L~VPVfvVVTKID  284 (641)
T KOG0463|consen  213 IC-EDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHL----GLALA---LHVPVFVVVTKID  284 (641)
T ss_pred             ec-cccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhh----hhhhh---hcCcEEEEEEeec
Confidence            11 1112347899999999997654332  2445777777776542   221211    11111   4799999999999


Q ss_pred             CCCCcCC--CHHHHHHH--------------------------HHHcCCeEEEEcCCCCCCHH
Q 026548          145 LVDMRAV--SAEDAVEF--------------------------AEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       145 ~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      +......  +......+                          ..+.-||+|.+|..+|.+++
T Consensus       285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~  347 (641)
T KOG0463|consen  285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP  347 (641)
T ss_pred             cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH
Confidence            8542111  01111111                          11223578999999999987

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.35  E-value=9.4e-06  Score=64.53  Aligned_cols=87  Identities=18%  Similarity=0.049  Sum_probs=52.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC--CCcCCCC-CCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhc------hhhH
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFFFDSK-STIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYR------AVTS   95 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~------~~~~   95 (237)
                      .+..-|.|+|++++|||+|+|.|.+.  .+..... ...+........... +....+.++||+|.....      ....
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            34567999999999999999999998  5543322 111111111222221 223578899999954322      1222


Q ss_pred             hhhc--CCcEEEEEEECCC
Q 026548           96 AYYR--GALGAVVVYDITK  112 (237)
Q Consensus        96 ~~~~--~~d~~ilv~d~~~  112 (237)
                      ..+.  -++.+||..+...
T Consensus        85 ~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          85 FALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHhCEEEEeccCcc
Confidence            2333  3788888777665

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.34  E-value=2.8e-06  Score=63.85  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=38.2

Q ss_pred             EEEEEEeCCCcchhchhhHh--------hhcCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548           77 IKAQIWDTAGQERYRAVTSA--------YYRGALGAVVVYDITKRQS-FDHVARWVEELRAHADSSIRIILIGNKSDL  145 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~  145 (237)
                      ....++|++|..........        ..-..|.+++++|+.+-.. .++...+..++....      +|++||+|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl  158 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL  158 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence            46789999996544433322        1235788999999765222 222333444444432      789999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.32  E-value=2e-05  Score=66.89  Aligned_cols=163  Identities=20%  Similarity=0.229  Sum_probs=88.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCc----------------CCCCCCc-----ceeEE---EEEEEE-CCEEEEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFF----------------FDSKSTI-----GVEFQ---TRTVTI-NGKIIKAQI   81 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~----------------~~~~~~~-----~~~~~---~~~~~~-~~~~~~~~l   81 (237)
                      ..+=|.|+||..+|||||+++|....+.                +++.+..     ...|.   ...+.+ ++..+++.+
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            3567999999999999999998653221                1111111     11111   122333 466788999


Q ss_pred             EeCCC--------cch--hch----hh---------------Hhhh--cCCcEEEEEEECC--C--hhhH-HHHHHHHHH
Q 026548           82 WDTAG--------QER--YRA----VT---------------SAYY--RGALGAVVVYDIT--K--RQSF-DHVARWVEE  125 (237)
Q Consensus        82 ~Dt~G--------~~~--~~~----~~---------------~~~~--~~~d~~ilv~d~~--~--~~s~-~~~~~~~~~  125 (237)
                      +|+.|        +..  ...    .|               ...+  +..=++++.-|.+  +  ++.+ +.-.+.++.
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            99998        000  000    01               0011  1222344544533  2  3333 233455555


Q ss_pred             HHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 026548          126 LRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK  196 (237)
Q Consensus       126 ~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~  196 (237)
                      +..   -+.|++|++|-.+-..  ....+...++..+++++++.+++..- .-+++. .|.+.++-.++-+
T Consensus       176 Lk~---igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l-~~~DI~-~Il~~vLyEFPV~  239 (492)
T PF09547_consen  176 LKE---IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQL-REEDIT-RILEEVLYEFPVS  239 (492)
T ss_pred             HHH---hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHc-CHHHHH-HHHHHHHhcCCce
Confidence            655   4799999999987433  33455666777788888888765322 223333 4444444445443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.31  E-value=5e-06  Score=69.42  Aligned_cols=95  Identities=18%  Similarity=0.139  Sum_probs=58.6

Q ss_pred             EEEEEEeCCCcchhchh----hHhh--------hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548           77 IKAQIWDTAGQERYRAV----TSAY--------YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~----~~~~--------~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                      +.+.|+||||.......    ...+        -...+..++|+|++...  +.+... ..+...   --+.-+|+||.|
T Consensus       197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~---~~~~giIlTKlD  270 (318)
T PRK10416        197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEA---VGLTGIILTKLD  270 (318)
T ss_pred             CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhh---CCCCEEEEECCC
Confidence            56889999995432221    1111        12467789999998532  233221 222221   124468999999


Q ss_pred             CCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      ...    ....+..++...++|+..++  +|++++++-.
T Consensus       271 ~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        271 GTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             CCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence            543    23356677788899998888  8888876543

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.30  E-value=6.4e-06  Score=65.35  Aligned_cols=87  Identities=23%  Similarity=0.175  Sum_probs=56.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hhhHhhhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AVTSAYYRGA  101 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~  101 (237)
                      .+|.++|-|.+||||++..|.+-..........+.......+.+.+  -++++.|.||.-+-.       .......+-+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4899999999999999999887654333222322333333333444  468899999933221       1233456788


Q ss_pred             cEEEEEEECCChhhHH
Q 026548          102 LGAVVVYDITKRQSFD  117 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~  117 (237)
                      ..+++|.|+..+-+-.
T Consensus       138 nli~~vld~~kp~~hk  153 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHK  153 (358)
T ss_pred             cEEEEEeeccCcccHH
Confidence            9999999977654433

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.30  E-value=2.1e-06  Score=63.24  Aligned_cols=77  Identities=22%  Similarity=0.252  Sum_probs=53.1

Q ss_pred             HhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcC
Q 026548           95 SAYYRGALGAVVVYDITKRQSFD--HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA  172 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  172 (237)
                      ...+..+|++++|+|+.++.+..  .+..|+...   . .+.|+++|+||+|+..+..  .....+.....+..++++||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            44578999999999998876543  344444332   1 4689999999999864322  22344555566778999999


Q ss_pred             CCCCC
Q 026548          173 LNGDN  177 (237)
Q Consensus       173 ~~~~g  177 (237)
                      .++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            88764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.29  E-value=4.1e-06  Score=70.23  Aligned_cols=95  Identities=18%  Similarity=0.014  Sum_probs=58.1

Q ss_pred             EEEEEEeCCCcchhch-h---hHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           77 IKAQIWDTAGQERYRA-V---TSAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~-~---~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      +.+.|+||+|...... +   ...+.  -..|.+++|+|+.........   ...+....   -.--+|+||.|...   
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~---a~~f~~~~---~~~giIlTKlD~~~---  293 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ---AREFNEAV---GIDGVILTKVDADA---  293 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH---HHHHHhcC---CCCEEEEeeecCCC---
Confidence            4578999999654222 1   12222  256889999998764322111   12222211   23468899999743   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          151 VSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                       ..-.+..++...+.|+..++  +|.+++++..
T Consensus       294 -~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        294 -KGGAALSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             -CccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence             22346666777899988887  7999977654

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=4e-06  Score=73.55  Aligned_cols=120  Identities=17%  Similarity=0.179  Sum_probs=80.5

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-----CCC-----------CCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFF-----DSK-----------STIGVEFQTRTVTINGKIIKAQIWDTAGQ   87 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   87 (237)
                      +.....+|.+.-.-.+||||+-++++...-..     ...           ...+++....-..+....+.+.|+||||+
T Consensus        35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH  114 (721)
T KOG0465|consen   35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH  114 (721)
T ss_pred             chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence            33456789999999999999999875432110     000           00122222222222333578999999999


Q ss_pred             chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      -.|.-...+.++-.|++++++++...-.-+....|.. +.+   .++|.+.++||.|..+
T Consensus       115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~r---y~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKR---YNVPRICFINKMDRMG  170 (721)
T ss_pred             eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHh---cCCCeEEEEehhhhcC
Confidence            9999999999999999999999876433333334443 333   3799999999999644

>cd01856 YlqF YlqF

Probab=98.27  E-value=2.8e-06  Score=64.62  Aligned_cols=91  Identities=16%  Similarity=0.067  Sum_probs=60.6

Q ss_pred             chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEE
Q 026548           91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEA  170 (237)
Q Consensus        91 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                      .......+.++|.+++|+|+.++...... .+...+     .+.|+++|+||+|+.....  .....++....+..++.+
T Consensus        10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~i   81 (171)
T cd01856          10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFV   81 (171)
T ss_pred             HHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence            34456678999999999999875432221 111211     2578999999999864211  112223333445568999


Q ss_pred             cCCCCCCHHHHHHHHHHHH
Q 026548          171 SALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       171 Sa~~~~gi~~~~~~l~~~i  189 (237)
                      |++++.|++++...+...+
T Consensus        82 Sa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          82 NAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             ECCCcccHHHHHHHHHHHH
Confidence            9999999999888887765

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.27  E-value=1.3e-05  Score=65.51  Aligned_cols=95  Identities=17%  Similarity=0.096  Sum_probs=59.2

Q ss_pred             EEEEEEeCCCcchhchhhH-------hhh-----cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548           77 IKAQIWDTAGQERYRAVTS-------AYY-----RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~-------~~~-----~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                      +.+.|+||||.........       ...     ...|.+++|+|++...  +.+.. ...+....   -+.-+|+||.|
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~~---~~~g~IlTKlD  228 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEAV---GLTGIILTKLD  228 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhhC---CCCEEEEEccC
Confidence            5678999999654332211       111     2478999999997532  22222 23333221   23568999999


Q ss_pred             CCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      ...    ....+..+....+.|+..++  +|.+++++-.
T Consensus       229 e~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       229 GTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             CCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence            744    23356677778889988887  8888876543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.24  E-value=2.1e-06  Score=72.47  Aligned_cols=58  Identities=17%  Similarity=0.257  Sum_probs=37.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCcCCCC-C-----CcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548           31 VVVIGDSAVGKSQILSRFTKNEFFFDSK-S-----TIGVEFQTRTVTINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      ++|+|.+|+|||||+|+|.+........ +     ...++.....+.+++..   .|+||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            7899999999999999999765432211 1     11122333344554332   399999976655

>PRK01889 GTPase RsgA; Reviewed

Probab=98.21  E-value=6.1e-06  Score=70.07  Aligned_cols=83  Identities=18%  Similarity=0.240  Sum_probs=58.8

Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-HcCCeEEEEcCCCCC
Q 026548           98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-DQGLFFSEASALNGD  176 (237)
Q Consensus        98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  176 (237)
                      ..++|.+++|+++........+.+++..+..   .+++.+||+||+|+....   .+....+.. ..+.+++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence            5789999999999755555556665555544   468889999999997531   111222222 356789999999999


Q ss_pred             CHHHHHHHHH
Q 026548          177 NVDTAFFRLL  186 (237)
Q Consensus       177 gi~~~~~~l~  186 (237)
                      |++++..++.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9998887764

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.20  E-value=7e-06  Score=67.37  Aligned_cols=92  Identities=15%  Similarity=0.069  Sum_probs=61.7

Q ss_pred             hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcC
Q 026548           93 VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA  172 (237)
Q Consensus        93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  172 (237)
                      .....+..+|++|+|+|+..+.+.... .....+     .+.|+++|+||+|+.....  .+...+.....+..++.+|+
T Consensus        14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa   85 (276)
T TIGR03596        14 EIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAINA   85 (276)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEEC
Confidence            345678899999999999876543221 111111     2579999999999854211  11122223335667899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHh
Q 026548          173 LNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       173 ~~~~gi~~~~~~l~~~i~~~  192 (237)
                      +++.|++++.+.+.+.+.+.
T Consensus        86 ~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        86 KKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CCcccHHHHHHHHHHHHHHh
Confidence            99999999988887776544

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=2.4e-05  Score=61.82  Aligned_cols=163  Identities=23%  Similarity=0.276  Sum_probs=101.7

Q ss_pred             eeeEEEEcCCCC--cHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEE--EEEEeCCCcchhchhhHhhhcCCcE
Q 026548           28 VFKVVVIGDSAV--GKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIK--AQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        28 ~~~i~v~G~~~s--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      ...++|+|..|+  ||.+|+.+|....+.....+...+.+....  ++.+.+.  +.+.-.+--+.+.-..........+
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~~~a~pl~a   81 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNAEIAEPLQA   81 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCcccccceee
Confidence            346889999998  999999999888776655554444444433  3333322  1121112112222222233455678


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---------------------------c-------
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM---------------------------R-------  149 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~---------------------------~-------  149 (237)
                      ++++||.+....+..+..|+....... . -.++.++||.|....                           .       
T Consensus        82 ~vmvfdlse~s~l~alqdwl~htdins-f-dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg  159 (418)
T KOG4273|consen   82 FVMVFDLSEKSGLDALQDWLPHTDINS-F-DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG  159 (418)
T ss_pred             EEEEEeccchhhhHHHHhhcccccccc-c-hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence            999999999999999999987532221 1 124567899885320                           0       


Q ss_pred             -------C---CCHHHHHHHHHHcCCeEEEEcCCC------------CCCHHHHHHHHHHHHHHhhh
Q 026548          150 -------A---VSAEDAVEFAEDQGLFFSEASALN------------GDNVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       150 -------~---~~~~~~~~~~~~~~~~~~~~Sa~~------------~~gi~~~~~~l~~~i~~~~~  194 (237)
                             .   .....+++|+.++++.+++.++.+            ..|+..+|.+|-.+++.-+.
T Consensus       160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmi  226 (418)
T KOG4273|consen  160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMI  226 (418)
T ss_pred             ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccce
Confidence                   0   123346778888999999988743            24788888888777655443

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=1.1e-05  Score=66.28  Aligned_cols=138  Identities=21%  Similarity=0.193  Sum_probs=87.2

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC----------CCc------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN----------EFF------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER   89 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~----------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   89 (237)
                      ...++|.-+|+..-|||||-.++..-          +++      ......+++.....++......  +-=.|+||+..
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~Rh--YaH~DCPGHAD  129 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRH--YAHTDCPGHAD  129 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccc--cccCCCCchHH
Confidence            34689999999999999999877531          111      1122333333333333333322  34689999999


Q ss_pred             hchhhHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCcC---CCHHHHHHHHHH
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKR---QSFDHVARWVEELRAHADSSI-RIILIGNKSDLVDMRA---VSAEDAVEFAED  162 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~-p~vvv~nK~D~~~~~~---~~~~~~~~~~~~  162 (237)
                      |-.....-..++|+.|+|+.++|.   ++-+.+    . +.+..  ++ .++|++||.|+..+.+   .-.-+++++...
T Consensus       130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHl----L-LArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse  202 (449)
T KOG0460|consen  130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHL----L-LARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSE  202 (449)
T ss_pred             HHHHhhcCccccCceEEEEEcCCCCCcchHHHH----H-HHHHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence            988777777899999999999994   333222    1 22222  33 4778899999874322   223356677777


Q ss_pred             cC-----CeEEEEcC
Q 026548          163 QG-----LFFSEASA  172 (237)
Q Consensus       163 ~~-----~~~~~~Sa  172 (237)
                      ++     +|++.=||
T Consensus       203 ~gf~Gd~~PvI~GSA  217 (449)
T KOG0460|consen  203 FGFDGDNTPVIRGSA  217 (449)
T ss_pred             cCCCCCCCCeeecch
Confidence            66     46776554

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.17  E-value=1.3e-06  Score=68.18  Aligned_cols=118  Identities=16%  Similarity=0.194  Sum_probs=77.3

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh----------hHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCC
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ----------SFDHVARWVEELRAHAD-SSIRIILIGNKSDL  145 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~  145 (237)
                      +.+.+.|.+|+...+..|...+.++-.+++++.++..+          -.+.-...+.-+..+-= .+-++|+++||.|+
T Consensus       199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDl  278 (359)
T KOG0085|consen  199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL  278 (359)
T ss_pred             heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhh
Confidence            45778999999999999999998888877777655421          11112222222222211 46789999999998


Q ss_pred             CCCc----------------CCCHHHHHHHHHHc----C------CeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548          146 VDMR----------------AVSAEDAVEFAEDQ----G------LFFSEASALNGDNVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       146 ~~~~----------------~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~  194 (237)
                      .++.                ....+.+++|..+.    +      +.-.++.|.+..+|.-+|.+..+.++...-
T Consensus       279 LEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  279 LEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             hhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            6521                22344555665432    1      123457788999999999998888877654

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=8.8e-06  Score=77.51  Aligned_cols=115  Identities=22%  Similarity=0.260  Sum_probs=66.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCC---CCc-ceeEEEEEEEECCEEEEEEEEeCCC----cc----hhchhhHh
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSK---STI-GVEFQTRTVTINGKIIKAQIWDTAG----QE----RYRAVTSA   96 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~l~Dt~G----~~----~~~~~~~~   96 (237)
                      +=-+|+|++|+||||++.. .+..|+....   ... +........-+.+.   -.++||+|    ++    .....|..
T Consensus       126 PWy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~  201 (1188)
T COG3523         126 PWYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLG  201 (1188)
T ss_pred             CceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccc---eEEEcCCcceecccCcchhhHHHHHH
Confidence            3468999999999999854 2333322110   000 00001111222333   44999999    21    22334544


Q ss_pred             hh---------cCCcEEEEEEECCChh---------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           97 YY---------RGALGAVVVYDITKRQ---------SFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        97 ~~---------~~~d~~ilv~d~~~~~---------s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      ++         +..+++|+.+|+.+.-         ....++.-+.++........|++|++||.|+..
T Consensus       202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence            42         5779999999987621         112234445556666567899999999999865

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=1e-06  Score=71.31  Aligned_cols=105  Identities=22%  Similarity=0.211  Sum_probs=72.0

Q ss_pred             EEEEeCCCcchhchhhHhhhcCCcEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--CC
Q 026548           79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA--VS  152 (237)
Q Consensus        79 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--~~  152 (237)
                      +.+.|+||++..-...-.-..-+|++++++..+.    +++.+.+.. .+ +..    -..++++-||+|+..+.+  ..
T Consensus       127 VSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa-ve-iM~----LkhiiilQNKiDli~e~~A~eq  200 (466)
T KOG0466|consen  127 VSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA-VE-IMK----LKHIIILQNKIDLIKESQALEQ  200 (466)
T ss_pred             EEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH-HH-Hhh----hceEEEEechhhhhhHHHHHHH
Confidence            6699999998765544444556789999988876    444444422 11 111    245889999999975432  23


Q ss_pred             HHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          153 AEDAVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       153 ~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      .++++.|...   .+.|++.+||.-..+++-+.++|++++
T Consensus       201 ~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  201 HEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             HHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            4456666664   357899999999999998777777665

>PRK12289 GTPase RsgA; Reviewed

Probab=98.16  E-value=3.6e-06  Score=71.10  Aligned_cols=57  Identities=25%  Similarity=0.221  Sum_probs=36.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCcCCCC-CC-----cceeEEEEEEEECCEEEEEEEEeCCCcchh
Q 026548           31 VVVIGDSAVGKSQILSRFTKNEFFFDSK-ST-----IGVEFQTRTVTINGKIIKAQIWDTAGQERY   90 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   90 (237)
                      ++|+|++|+|||||||+|.+........ +.     ..++.....+.+++..   .|+||||...+
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~  237 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP  237 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence            7999999999999999999765432211 11     1122333444454322   49999997543

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.15  E-value=5.8e-05  Score=66.52  Aligned_cols=137  Identities=15%  Similarity=0.234  Sum_probs=76.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC--------CCcCCCCCC---------------cceeEEEEEEEE---------CCE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN--------EFFFDSKST---------------IGVEFQTRTVTI---------NGK   75 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~--------~~~~~~~~~---------------~~~~~~~~~~~~---------~~~   75 (237)
                      .-.|+|+|+.|+||||++..|...        ++......+               .+..+.  ...-         .-.
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~~l~  427 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLERLR  427 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHHHhc
Confidence            457899999999999999887642        110000000               001111  0000         012


Q ss_pred             EEEEEEEeCCCcchhchhhHh---hhc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           76 IIKAQIWDTAGQERYRAVTSA---YYR--GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        76 ~~~~~l~Dt~G~~~~~~~~~~---~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      .+.+.|+||+|..........   .+.  .....++|++.+..  ...+...+..+..    ..+.-+|+||.|...   
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~---  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG---  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc---
Confidence            356889999996543322111   011  12345777777642  3333333333332    235679999999633   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548          151 VSAEDAVEFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                       ....+..+....+.++..++  +|..|
T Consensus       499 -~lG~aLsv~~~~~LPI~yvt--~GQ~V  523 (559)
T PRK12727        499 -RFGSALSVVVDHQMPITWVT--DGQRV  523 (559)
T ss_pred             -chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence             34678888888999987776  67766

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.15  E-value=5.6e-06  Score=64.36  Aligned_cols=92  Identities=20%  Similarity=0.118  Sum_probs=54.8

Q ss_pred             EEEEEEeCCCcchhchh----hHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           77 IKAQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      +.+.|+||+|.......    +..++  ...+-+++|++++....  .+..+.. +....  + +-=+++||.|-..   
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~~-~~~~~--~-~~~lIlTKlDet~---  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQALA-FYEAF--G-IDGLILTKLDETA---  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHHH-HHHHS--S-TCEEEEESTTSSS---
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHHH-Hhhcc--c-CceEEEEeecCCC---
Confidence            34789999995543321    11222  25677899999886532  2222222 22221  1 2357799999643   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          151 VSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                       ..-.+..++...+.|+-.++  +|.+|++
T Consensus       155 -~~G~~l~~~~~~~~Pi~~it--~Gq~V~D  181 (196)
T PF00448_consen  155 -RLGALLSLAYESGLPISYIT--TGQRVDD  181 (196)
T ss_dssp             -TTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred             -CcccceeHHHHhCCCeEEEE--CCCChhc
Confidence             34567888889999988877  6666633

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK13796 GTPase YqeH; Provisional

Probab=98.14  E-value=3.7e-06  Score=71.66  Aligned_cols=57  Identities=23%  Similarity=0.376  Sum_probs=37.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCC----cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEF----FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE   88 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   88 (237)
                      .+++|+|.+|+|||||+|+|.....    ........+++.....+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            4799999999999999999986431    1111122233344445555443   3599999964

>PRK13796 GTPase YqeH; Provisional

Probab=98.11  E-value=2.4e-05  Score=66.79  Aligned_cols=93  Identities=22%  Similarity=0.293  Sum_probs=61.2

Q ss_pred             chhchhhHhhhcCCc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH----HHHH
Q 026548           88 ERYRAVTSAYYRGAL-GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE----FAED  162 (237)
Q Consensus        88 ~~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~----~~~~  162 (237)
                      +.|...... +...| .+++|+|+.+..     ..|...+.... .+.|+++|+||+|+... ....+...+    +++.
T Consensus        57 ~~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~  128 (365)
T PRK13796         57 DDFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKE  128 (365)
T ss_pred             HHHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHh
Confidence            345444433 34455 899999997733     22334444433 26799999999999642 333333333    3555


Q ss_pred             cCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 026548          163 QGL---FFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       163 ~~~---~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      .++   .++.+||+++.|++++++.+.+.
T Consensus       129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        129 LGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            665   58999999999999999888654

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.11  E-value=6.6e-06  Score=70.04  Aligned_cols=125  Identities=14%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCc----CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhH--------h
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFF----FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTS--------A   96 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------~   96 (237)
                      .+++++|.+|+|||||+|+|.+....    .......+++.....+.+++   .+.++||||......+..        .
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~~~~~~~~l~~~~l~~  231 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIINSHQMAHYLDKKDLKY  231 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCChhHhhhhcCHHHHhh
Confidence            48999999999999999999975421    11112223334444555533   245999999543322111        1


Q ss_pred             hh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH
Q 026548           97 YY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED  162 (237)
Q Consensus        97 ~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~  162 (237)
                      ..  +......+.++....-.+..+. ++..+.   .....+.+.+++.+..+.  -..+.+.++..+
T Consensus       232 ~~~~~~i~~~~~~l~~~q~~~~ggl~-~~d~~~---~~~~~~~~~~~~~~~~h~--t~~~~a~~~~~~  293 (360)
T TIGR03597       232 ITPKKEIKPKTYQLNPNQTLFLGGLA-RFDYLK---GEKTSFTFYVSNELNIHR--TKLENADELYNK  293 (360)
T ss_pred             cCCCCccCceEEEeCCCCEEEEceEE-EEEEec---CCceEEEEEccCCceeEe--echhhhHHHHHh
Confidence            11  2345566666655422222110 111111   124556677777765542  223444444443

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.10  E-value=3.9e-05  Score=66.16  Aligned_cols=143  Identities=14%  Similarity=0.122  Sum_probs=78.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCC---C-----CCC---------------cceeEEEEEEE-------ECCEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFD---S-----KST---------------IGVEFQTRTVT-------INGKII   77 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~---~-----~~~---------------~~~~~~~~~~~-------~~~~~~   77 (237)
                      .-.|+++|+.|+||||++..|.+......   .     ..+               .+..+....-.       ..-...
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            45899999999999999997765311000   0     000               00000000000       000113


Q ss_pred             EEEEEeCCCcchhch----hhHhhhc--CCcEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           78 KAQIWDTAGQERYRA----VTSAYYR--GALGAVVVYDITK-RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~----~~~~~~~--~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      .+.++||+|......    ....+..  ..+-.++|+|++. ....   ..++..+..    --+-=+|+||.|-..   
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~---~~~~~~f~~----~~~~~~I~TKlDEt~---  340 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL---DEVISAYQG----HGIHGCIITKVDEAA---  340 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH---HHHHHHhcC----CCCCEEEEEeeeCCC---
Confidence            467999999554322    2222221  2345788889874 3333   333333322    122358899999643   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHH
Q 026548          151 VSAEDAVEFAEDQGLFFSEASALNGDNV-DTAFF  183 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~~  183 (237)
                       ..-.+..++...+.++..++  +|..| +++..
T Consensus       341 -~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~  371 (420)
T PRK14721        341 -SLGIALDAVIRRKLVLHYVT--NGQKVPEDLHE  371 (420)
T ss_pred             -CccHHHHHHHHhCCCEEEEE--CCCCchhhhhh
Confidence             34567788888999987776  77777 44443

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.08  E-value=3e-05  Score=65.84  Aligned_cols=147  Identities=12%  Similarity=0.095  Sum_probs=77.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcC-C--CCCCcceeE------------------EEEEEEE---------CCEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFF-D--SKSTIGVEF------------------QTRTVTI---------NGKII   77 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~-~--~~~~~~~~~------------------~~~~~~~---------~~~~~   77 (237)
                      .-.++|+|++|+||||++..|....... .  ....++.+.                  ....+.-         .-...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            3478899999999999999886532110 0  000000000                  0000000         00124


Q ss_pred             EEEEEeCCCcchhchhhHh---hhc---CCcEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCCC
Q 026548           78 KAQIWDTAGQERYRAVTSA---YYR---GALGAVVVYDITK-RQSFDHVARWVEELRAHADSS--IRIILIGNKSDLVDM  148 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~~~~~---~~~---~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~--~p~vvv~nK~D~~~~  148 (237)
                      .+.|+||+|..........   .+.   ...-.++|++++. .+....+..-+..........  -+-=+|+||.|-.. 
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-  295 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-  295 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence            6789999996644332211   122   2344688889876 334343322222221110000  12358889999643 


Q ss_pred             cCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                         ..-.+..++...+.|+..++  +|..|.+
T Consensus       296 ---~~G~~l~~~~~~~lPi~yvt--~Gq~VPe  322 (374)
T PRK14722        296 ---NLGGVLDTVIRYKLPVHYVS--TGQKVPE  322 (374)
T ss_pred             ---CccHHHHHHHHHCcCeEEEe--cCCCCCc
Confidence               34567788888898877776  5555544

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.07  E-value=8.2e-06  Score=65.76  Aligned_cols=58  Identities=21%  Similarity=0.201  Sum_probs=36.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCC------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDS------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      .++++|.+|+|||||+|+|.+.......      .....++.....+.+.+.    .|+||||...+.
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~~  185 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEFG  185 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccccC
Confidence            6899999999999999999976433211      111112223333444332    499999965543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.07  E-value=2.2e-05  Score=64.87  Aligned_cols=92  Identities=20%  Similarity=0.173  Sum_probs=61.9

Q ss_pred             hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcC
Q 026548           93 VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA  172 (237)
Q Consensus        93 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  172 (237)
                      .....+..+|++|+|+|+..+.+...  .++..+.    .+.|+++|+||+|+.....  .+...++....+.+++.+|+
T Consensus        17 ~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa   88 (287)
T PRK09563         17 EIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINA   88 (287)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEEC
Confidence            34566889999999999987654322  1112211    2589999999999854211  11222223344677899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHh
Q 026548          173 LNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       173 ~~~~gi~~~~~~l~~~i~~~  192 (237)
                      +++.|++++++.+.+.+.+.
T Consensus        89 ~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         89 KKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             CCcccHHHHHHHHHHHHHHH
Confidence            99999999988887766543

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.06  E-value=4.9e-06  Score=71.74  Aligned_cols=57  Identities=25%  Similarity=0.244  Sum_probs=42.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE   88 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   88 (237)
                      .+.|++||.||+||||+||+|.+++....+ .|.|.+....++.+..   .+.|.|+||..
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCcc
Confidence            699999999999999999999999865544 3444444444554543   36699999943

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.06  E-value=7.4e-06  Score=66.87  Aligned_cols=59  Identities=20%  Similarity=0.174  Sum_probs=39.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCc------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFF------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      -.+++|.+|+|||||+|+|......      .......-++.....+.+++..+   |+||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence            5789999999999999999864321      11212223344556666754334   89999976654

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.95  E-value=6.5e-05  Score=63.95  Aligned_cols=92  Identities=10%  Similarity=0.055  Sum_probs=54.9

Q ss_pred             EEEEEEeCCCcchhchh----hHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           77 IKAQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      +.+.|+||+|.......    ...++  ...+.+++|+|++-..  ..+...+..+...    ..-=+|+||.|-..   
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~---  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETA---  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence            46789999996443221    22233  2346788899875322  2333333333321    22358899999643   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          151 VSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                       ..-.+..++...++|+..++  +|.+|.+
T Consensus       392 -k~G~iLni~~~~~lPIsyit--~GQ~VPe  418 (436)
T PRK11889        392 -SSGELLKIPAVSSAPIVLMT--DGQDVKK  418 (436)
T ss_pred             -CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence             34467788888899877775  5555544

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.94  E-value=2.3e-05  Score=64.68  Aligned_cols=60  Identities=18%  Similarity=0.271  Sum_probs=38.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCC------CCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSK------STIGVEFQTRTVTINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      -.++++|++|+|||||+|.|.+........      ....++.....+...+.   ..++||||...+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            469999999999999999999865432211      11112233334444432   2499999987654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.93  E-value=7.2e-05  Score=60.08  Aligned_cols=117  Identities=21%  Similarity=0.385  Sum_probs=71.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC----CCcceeEEEEEEEECCEEEEEEEEeCCCc-------chhchhh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK----STIGVEFQTRTVTINGKIIKAQIWDTAGQ-------ERYRAVT   94 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~~~~~~   94 (237)
                      ...++|+-+|..|.|||||+..|++-++.....    +.+........+.-.+..+++.+.||.|.       +.|....
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV  119 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV  119 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence            446899999999999999999999988754432    33333333333333556678999999981       1221111


Q ss_pred             H-------hh-------------h--cCCcEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           95 S-------AY-------------Y--RGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        95 ~-------~~-------------~--~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      .       .|             +  .+.++++|.++.+. .++..+.- .+..+.    .++.+|-++-|.|-..
T Consensus       120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDtis  190 (406)
T KOG3859|consen  120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADTIS  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhhhh
Confidence            1       11             1  46788899888774 33333321 112222    3456677778888654

>PRK00098 GTPase RsgA; Reviewed

Probab=97.92  E-value=2e-05  Score=65.40  Aligned_cols=57  Identities=23%  Similarity=0.274  Sum_probs=35.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCC-C-----CcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSK-S-----TIGVEFQTRTVTINGKIIKAQIWDTAGQER   89 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   89 (237)
                      .++++|++|+|||||+|+|.+........ +     ...++.....+.+++.   ..++||||...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            58999999999999999998765432211 1     0112223333444432   25899999654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.91  E-value=8.9e-05  Score=56.39  Aligned_cols=83  Identities=16%  Similarity=0.027  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCcchhch----hhHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           77 IKAQIWDTAGQERYRA----VTSAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      ..+.++|++|......    ....+.  ...|.+++|+|......   ...+...+....  + ..-+|.||.|...   
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~---  153 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDA---  153 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCC---
Confidence            4577899999643221    122222  24899999999865332   223333333322  2 3567789999754   


Q ss_pred             CCHHHHHHHHHHcCCeEEE
Q 026548          151 VSAEDAVEFAEDQGLFFSE  169 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~  169 (237)
                       ....+.+.+...++|+..
T Consensus       154 -~~g~~~~~~~~~~~p~~~  171 (173)
T cd03115         154 -RGGAALSIRAVTGKPIKF  171 (173)
T ss_pred             -CcchhhhhHHHHCcCeEe
Confidence             223345577777777544

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.87  E-value=0.00019  Score=54.44  Aligned_cols=136  Identities=20%  Similarity=0.217  Sum_probs=67.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDT-AGQ---------------------   87 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~---------------------   87 (237)
                      ||++-|++|+|||||+++++..-.... .+.  .-+....+.-++..+-+.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTC-GGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccC-Ccc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            689999999999999999875431110 011  1122233333444455556665 221                     


Q ss_pred             -chhch----hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC-CCCCCcCCCHHHHHHHHH
Q 026548           88 -ERYRA----VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKS-DLVDMRAVSAEDAVEFAE  161 (237)
Q Consensus        88 -~~~~~----~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~-D~~~~~~~~~~~~~~~~~  161 (237)
                       +.+..    .....+..+|  ++++|-=.+.-+ ....|.+.+......+.|++.++.+. +..        -..++..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~~--------~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDNP--------FLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--SC--------CHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCcH--------HHHHHHh
Confidence             11111    1122224556  777883321111 01223344444444578888888766 321        2456666


Q ss_pred             HcCCeEEEEcCCCCCCHH
Q 026548          162 DQGLFFSEASALNGDNVD  179 (237)
Q Consensus       162 ~~~~~~~~~Sa~~~~gi~  179 (237)
                      ..++.+++++..+.+.+.
T Consensus       147 ~~~~~i~~vt~~NRd~l~  164 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDALP  164 (168)
T ss_dssp             TTTSEEEE--TTTCCCHH
T ss_pred             CCCcEEEEeChhHHhhHh
Confidence            778899999888777654

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.86  E-value=2.2e-05  Score=65.96  Aligned_cols=159  Identities=20%  Similarity=0.127  Sum_probs=93.9

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCC-------------------------------CcCCCCCCcceeEEEEEE
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNE-------------------------------FFFDSKSTIGVEFQTRTV   70 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~   70 (237)
                      ..+....++++++|...+||||+-..+....                               -........+.......+
T Consensus        73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F  152 (501)
T KOG0459|consen   73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF  152 (501)
T ss_pred             cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence            3444567999999999999999875442210                               001111112223333333


Q ss_pred             EECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCCh---hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCC
Q 026548           71 TINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR---QSFDHVARWVEELRAH-ADSSIRIILIGNKSDLV  146 (237)
Q Consensus        71 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~  146 (237)
                      ....  -++.+.|+||+..|-.....-..++|..++|+++...   ..|+.-.+-....... ...-...|+++||+|-+
T Consensus       153 Ete~--~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddP  230 (501)
T KOG0459|consen  153 ETEN--KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP  230 (501)
T ss_pred             Eecc--eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCC
Confidence            3333  3577999999999988777778899999999998542   2233221111111111 11235578999999964


Q ss_pred             C--CcCCC----HHHHHHHHHHcC------CeEEEEcCCCCCCHHHHH
Q 026548          147 D--MRAVS----AEDAVEFAEDQG------LFFSEASALNGDNVDTAF  182 (237)
Q Consensus       147 ~--~~~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~  182 (237)
                      .  +..-.    .+....|.+..|      ..++++|..+|.++.+..
T Consensus       231 tvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  231 TVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             ccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence            3  11111    223444555443      348999999999988754

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.86  E-value=0.00022  Score=61.95  Aligned_cols=94  Identities=20%  Similarity=0.179  Sum_probs=55.8

Q ss_pred             EEEEEEeCCCcchhc----hhhHhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548           77 IKAQIWDTAGQERYR----AVTSAYYR---GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR  149 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~----~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~  149 (237)
                      +.+.|+||+|.....    .....++.   .-.-+++|++++...  ..+...+..+...   + +--+|+||.|-..  
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~--  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS--  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence            467899999965443    12333333   224567888876432  2333333333221   1 2358899999643  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHH
Q 026548          150 AVSAEDAVEFAEDQGLFFSEASALNGDNV-DTAF  182 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~  182 (237)
                        ....+..++...+.|+..++  +|.+| +++.
T Consensus       372 --~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl~  401 (424)
T PRK05703        372 --SLGSILSLLIESGLPISYLT--NGQRVPDDIK  401 (424)
T ss_pred             --cccHHHHHHHHHCCCEEEEe--CCCCChhhhh
Confidence              33467788888999987776  67775 4443

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.84  E-value=0.00018  Score=66.24  Aligned_cols=145  Identities=13%  Similarity=0.098  Sum_probs=79.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCC-C-C-CCcceeEEE---------------EEEE-E-----------CCEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFD-S-K-STIGVEFQT---------------RTVT-I-----------NGKIIK   78 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~-~-~-~~~~~~~~~---------------~~~~-~-----------~~~~~~   78 (237)
                      --|+|+|+.|+||||.+..|........ . . ..++.+.+.               ..+. .           .-..+.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            3589999999999999998875321100 0 0 000000000               0000 0           001235


Q ss_pred             EEEEeCCCcchhchh----hHhhh--cCCcEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC
Q 026548           79 AQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITK-RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV  151 (237)
Q Consensus        79 ~~l~Dt~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~  151 (237)
                      +.|+||+|.......    ...+.  ...+-.++|+|++. .+.+.++.   ..+...... -+-=+|+||.|-..    
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~-~i~glIlTKLDEt~----  337 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGE-DVDGCIITKLDEAT----  337 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccC-CCCEEEEeccCCCC----
Confidence            789999994332221    11111  23455789999875 33333333   333221100 12358899999643    


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHH
Q 026548          152 SAEDAVEFAEDQGLFFSEASALNGDNV-DTAFF  183 (237)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~~  183 (237)
                      ..-.+..+....++|+..++  +|.+| +++..
T Consensus       338 ~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~  368 (767)
T PRK14723        338 HLGPALDTVIRHRLPVHYVS--TGQKVPEHLEL  368 (767)
T ss_pred             CccHHHHHHHHHCCCeEEEe--cCCCChhhccc
Confidence            34467788888999988886  77777 55443

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.83  E-value=0.00013  Score=54.17  Aligned_cols=57  Identities=21%  Similarity=0.148  Sum_probs=36.3

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                      +.+.|+||+|.....   ..++..+|.+|++....-.+.+.-++.  . +...+     -++++||+|
T Consensus        92 ~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~-~~~~~-----~~~~~~k~~  148 (148)
T cd03114          92 FDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA--G-IMEIA-----DIVVVNKAD  148 (148)
T ss_pred             CCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh--h-Hhhhc-----CEEEEeCCC
Confidence            568899999864322   348889999999988774443333221  1 22222     378899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.82  E-value=0.00014  Score=59.54  Aligned_cols=93  Identities=20%  Similarity=0.212  Sum_probs=65.7

Q ss_pred             hhHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEc
Q 026548           93 VTSAYYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus        93 ~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  171 (237)
                      +.+.-..+.|-+++|+++.+|+ +...+.+++-....   .++..+|++||+|+..+.....++...+...++.+++.+|
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s  148 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS  148 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence            3344445677788888888865 44455554444333   4788889999999986544333456667778999999999


Q ss_pred             CCCCCCHHHHHHHHHHH
Q 026548          172 ALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       172 a~~~~gi~~~~~~l~~~  188 (237)
                      ++++++++++...+..+
T Consensus       149 ~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         149 AKNGDGLEELAELLAGK  165 (301)
T ss_pred             CcCcccHHHHHHHhcCC
Confidence            99999999887766543

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.82  E-value=0.00023  Score=59.60  Aligned_cols=85  Identities=9%  Similarity=0.064  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCcchhchhhHhhhc--------CCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYR--------GALGAVVVYDITKRQSF-DHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      ....++.+.|..........++.        ..+++|.|+|+.+-... +.......++...      =+|++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence            44568888887655554444321        24789999998753221 1111122333332      279999999875


Q ss_pred             CcCCCHHHHHHHHHHcC--CeEEEEc
Q 026548          148 MRAVSAEDAVEFAEDQG--LFFSEAS  171 (237)
Q Consensus       148 ~~~~~~~~~~~~~~~~~--~~~~~~S  171 (237)
                      .    .+.+.+..+.++  ++++.++
T Consensus       165 ~----~~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        165 E----AEKLRERLARINARAPVYTVV  186 (318)
T ss_pred             H----HHHHHHHHHHhCCCCEEEEec
Confidence            3    245555555554  5566554

>PRK13695 putative NTPase; Provisional

Probab=97.80  E-value=0.00044  Score=52.64  Aligned_cols=76  Identities=18%  Similarity=0.188  Sum_probs=41.9

Q ss_pred             hhcCCcEEEEEEEC---CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCC
Q 026548           97 YYRGALGAVVVYDI---TKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASAL  173 (237)
Q Consensus        97 ~~~~~d~~ilv~d~---~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  173 (237)
                      .+..++.  +++|-   .+..+    ..+.+.+......+.|++++.+|...       .....++....+..+++++- 
T Consensus        93 ~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~~-  158 (174)
T PRK13695         93 ALEEADV--IIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELTP-  158 (174)
T ss_pred             ccCCCCE--EEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEcc-
Confidence            3455664  67783   22222    22233333333357899999998532       12344566666778888854 


Q ss_pred             CCCCHHHHHHHHHHH
Q 026548          174 NGDNVDTAFFRLLQE  188 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~  188 (237)
                        ++=+++.+.+.+.
T Consensus       159 --~~r~~~~~~~~~~  171 (174)
T PRK13695        159 --ENRDSLPFEILNR  171 (174)
T ss_pred             --hhhhhHHHHHHHH
Confidence              3444666666554

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.79  E-value=4.2e-05  Score=66.45  Aligned_cols=83  Identities=17%  Similarity=0.073  Sum_probs=50.3

Q ss_pred             EEEEEeCCCcchhchhh----Hh--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcC
Q 026548           78 KAQIWDTAGQERYRAVT----SA--YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRA  150 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~~~----~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~  150 (237)
                      .+.|+||+|........    ..  .+-.+|.+++|+|++...   +.......+..    .++ .-+|+||.|...   
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~----~l~i~gvIlTKlD~~a---  246 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE----AVGIGGIIITKLDGTA---  246 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh----cCCCCEEEEecccCCC---
Confidence            67899999965443221    11  134678899999987642   22122222322    222 357889999643   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 026548          151 VSAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~S  171 (237)
                       ..-.+..+....+.|+.+++
T Consensus       247 -~~G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        247 -KGGGALSAVAETGAPIKFIG  266 (437)
T ss_pred             -cccHHHHHHHHHCcCEEEEe
Confidence             23456777778888877765

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.77  E-value=0.00048  Score=60.53  Aligned_cols=94  Identities=20%  Similarity=0.194  Sum_probs=53.9

Q ss_pred             EEEEEeCCCcchhchh---hHhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC
Q 026548           78 KAQIWDTAGQERYRAV---TSAYYRG---ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV  151 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~~---~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~  151 (237)
                      .+.++||+|.......   ....+..   ..-.++|+|++...  ..+......+..    ....-+|+||.|-..    
T Consensus       336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet~----  405 (484)
T PRK06995        336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEAA----  405 (484)
T ss_pred             CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCcc----
Confidence            4679999994433211   1112221   12367888886432  222222222222    223457889999643    


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHH
Q 026548          152 SAEDAVEFAEDQGLFFSEASALNGDNV-DTAFF  183 (237)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~~  183 (237)
                      ..-.+..+....++++..++  +|.+| +++..
T Consensus       406 ~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~  436 (484)
T PRK06995        406 SLGGALDVVIRYKLPLHYVS--NGQRVPEDLHL  436 (484)
T ss_pred             cchHHHHHHHHHCCCeEEEe--cCCCChhhhcc
Confidence            34567888888999988776  77777 55443

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.76  E-value=0.00041  Score=59.45  Aligned_cols=95  Identities=12%  Similarity=0.051  Sum_probs=58.0

Q ss_pred             EEEEEEeCCCcchhch----hhHhhhcCC--c-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548           77 IKAQIWDTAGQERYRA----VTSAYYRGA--L-GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR  149 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~----~~~~~~~~~--d-~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~  149 (237)
                      +.+.|+||+|......    ....++...  + -.++|+|++...  ..+...++.+...    -+-=+|+||.|-..  
T Consensus       255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~--  326 (388)
T PRK12723        255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETT--  326 (388)
T ss_pred             CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCC--
Confidence            5688999999554332    122233322  3 578999998652  3343444443221    13458899999643  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHH
Q 026548          150 AVSAEDAVEFAEDQGLFFSEASALNGDNV-DTAFF  183 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~~  183 (237)
                        ..-.+..++...+.|+..++  +|.+| +++..
T Consensus       327 --~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~  357 (388)
T PRK12723        327 --CVGNLISLIYEMRKEVSYVT--DGQIVPHNISI  357 (388)
T ss_pred             --cchHHHHHHHHHCCCEEEEe--CCCCChhhhhh
Confidence              34567788888899977776  77777 44443

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.76  E-value=0.00029  Score=59.85  Aligned_cols=140  Identities=17%  Similarity=0.225  Sum_probs=79.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCC---CcceeEEEE---------------EEEE------------CCEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKS---TIGVEFQTR---------------TVTI------------NGKII   77 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~---~~~~~~~~~---------------~~~~------------~~~~~   77 (237)
                      .--|+++||.|+||||-+-.|..+-.-.....   .++++.+..               .+.+            .-..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            56799999999999999987755433111111   111111100               0000            00124


Q ss_pred             EEEEEeCCCcchhchh----hHhhhcCC--cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC
Q 026548           78 KAQIWDTAGQERYRAV----TSAYYRGA--LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV  151 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~~----~~~~~~~~--d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~  151 (237)
                      .++|+||.|...+...    ...++..+  .-+.+|++++..  .+++...+..+....    .--+++||.|-.    .
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~----i~~~I~TKlDET----~  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP----IDGLIFTKLDET----T  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC----cceeEEEccccc----C
Confidence            5889999997666543    33344333  335677787754  345555555554321    124789999953    2


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          152 SAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      +.-.....+...+.|+..++  +|..|.
T Consensus       353 s~G~~~s~~~e~~~PV~YvT--~GQ~VP  378 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYVT--NGQRVP  378 (407)
T ss_pred             chhHHHHHHHHhCCCeEEEe--CCCCCC
Confidence            45567777778888866654  555443

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.74  E-value=0.0003  Score=59.74  Aligned_cols=92  Identities=16%  Similarity=0.104  Sum_probs=54.1

Q ss_pred             EEEEEEeCCCcchhchh----hHhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           77 IKAQIWDTAGQERYRAV----TSAYYR--GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~----~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      +.+.|+||+|.......    ...+..  ..+.+++|++++.  ...++...+..+..    --+--+|+||.|-..   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~----l~i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAE----IPIDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence            56789999996543321    222232  3366677776632  22333333333221    123458899999643   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          151 VSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                       ..-.+..++...+.|+..++  +|..|.+
T Consensus       357 -~~G~~Lsv~~~tglPIsylt--~GQ~Vpd  383 (407)
T PRK12726        357 -RIGDLYTVMQETNLPVLYMT--DGQNITE  383 (407)
T ss_pred             -CccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence             34567888888999987776  5666554

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.74  E-value=0.0021  Score=48.28  Aligned_cols=142  Identities=10%  Similarity=0.065  Sum_probs=95.2

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEe-CCCcchhchhhHhhhcCC
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD-TAGQERYRAVTSAYYRGA  101 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D-t~G~~~~~~~~~~~~~~~  101 (237)
                      .+..+...|+++|..+.++..|..++...+-      +    +.          +++.+-- .|--.+.    ...-...
T Consensus        10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~----~~----------l~Vh~a~sLPLp~e~----~~lRprI   65 (176)
T PF11111_consen   10 LPELNTATILLVGTEEALLQQLAEAMLEEDK------E----FK----------LKVHLAKSLPLPSEN----NNLRPRI   65 (176)
T ss_pred             CCCcceeEEEEecccHHHHHHHHHHHHhhcc------c----ee----------EEEEEeccCCCcccc----cCCCcee
Confidence            4566688999999999999999999986321      1    11          1111111 0100111    1123568


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      |.++|++|.....+++.++.-+..+....-.+ .+.++.+-....+...+..+++.+++..+.++++.+.-.+.++..  
T Consensus        66 DlIVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~--  142 (176)
T PF11111_consen   66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT--  142 (176)
T ss_pred             EEEEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH--
Confidence            99999999999999998877666654333222 355666666666667888999999999999999999877776665  


Q ss_pred             HHHHHHHHHHhh
Q 026548          182 FFRLLQEIYGAV  193 (237)
Q Consensus       182 ~~~l~~~i~~~~  193 (237)
                        .+++.++...
T Consensus       143 --~lAqRLL~~l  152 (176)
T PF11111_consen  143 --SLAQRLLRML  152 (176)
T ss_pred             --HHHHHHHHHH
Confidence              4444444443

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.74  E-value=0.00084  Score=56.15  Aligned_cols=94  Identities=20%  Similarity=0.175  Sum_probs=54.0

Q ss_pred             EEEEEEeCCCcchhchhhHhhh--------cCCcEEEEEEECCChhh-HHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548           77 IKAQIWDTAGQERYRAVTSAYY--------RGALGAVVVYDITKRQS-FDHVAR-WVEELRAHADSSIRIILIGNKSDLV  146 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s-~~~~~~-~~~~~~~~~~~~~p~vvv~nK~D~~  146 (237)
                      +...++.+.|..........+.        -..|++|-|+|+.+-.. ...+.. ...++...      =+|++||+|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence            3455777777555433333322        24577999999877332 222222 23333332      28999999998


Q ss_pred             CCcCCCHHHHHHHHHHcC--CeEEEEcCCCCCCHH
Q 026548          147 DMRAVSAEDAVEFAEDQG--LFFSEASALNGDNVD  179 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  179 (237)
                      ....  .+......++++  ++++.++. .+....
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~  190 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLA  190 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHH
Confidence            7542  455566666665  56888776 334443

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.70  E-value=0.00026  Score=42.99  Aligned_cols=49  Identities=18%  Similarity=0.188  Sum_probs=33.5

Q ss_pred             HhhhcCCcEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548           95 SAYYRGALGAVVVYDITK--RQSFDHVARWVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                      ....+-.++++|++|++.  ..+.+.....++.++... .+.|+++|.||+|
T Consensus         8 ~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen    8 TALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             HGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             HHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            344566789999999987  566777777888888876 4899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.69  E-value=0.00014  Score=62.50  Aligned_cols=140  Identities=17%  Similarity=0.230  Sum_probs=75.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC-CcCC------C-C--------------CCcceeEEEEE-E-E----ECCEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE-FFFD------S-K--------------STIGVEFQTRT-V-T----INGKIIKAQ   80 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~-~~~~------~-~--------------~~~~~~~~~~~-~-~----~~~~~~~~~   80 (237)
                      .-++|+|++|+||||++..|.... ....      . +              ...+..+.... . .    +....+.+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999886421 0000      0 0              00011111000 0 0    011234678


Q ss_pred             EEeCCCcchhch----hhHhhhc-----CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC
Q 026548           81 IWDTAGQERYRA----VTSAYYR-----GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV  151 (237)
Q Consensus        81 l~Dt~G~~~~~~----~~~~~~~-----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~  151 (237)
                      |+||+|......    .+..+++     ...-.++|+|++...  +.+...+..+..    --+-=+|+||.|-..    
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~----  373 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEAD----  373 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCC----
Confidence            999999543211    1222222     133578899987643  222233333321    122358899999643    


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          152 SAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                      ..-.+..++...+.|+..++  +|.+|.+
T Consensus       374 ~~G~il~i~~~~~lPI~ylt--~GQ~VPe  400 (432)
T PRK12724        374 FLGSFLELADTYSKSFTYLS--VGQEVPF  400 (432)
T ss_pred             CccHHHHHHHHHCCCEEEEe--cCCCCCC
Confidence            34457788888899877776  5555444

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.66  E-value=9.7e-05  Score=56.58  Aligned_cols=81  Identities=19%  Similarity=0.160  Sum_probs=42.8

Q ss_pred             EEEEEEeCCCcchhchhh---Hh--hhcCCcEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           77 IKAQIWDTAGQERYRAVT---SA--YYRGALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~---~~--~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      ....|+.+.|......+.   ..  ..-..+.+|.|+|+.+-.....+.. +..++.. +     =+|++||+|+.... 
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-A-----DvIvlnK~D~~~~~-  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-A-----DVIVLNKIDLVSDE-  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH-
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh-c-----CEEEEeccccCChh-
Confidence            456677888855444431   11  1235688999999976433333333 2333333 2     27999999987643 


Q ss_pred             CCHHHHHHHHHHcC
Q 026548          151 VSAEDAVEFAEDQG  164 (237)
Q Consensus       151 ~~~~~~~~~~~~~~  164 (237)
                      ...+...+..+..+
T Consensus       158 ~~i~~~~~~ir~ln  171 (178)
T PF02492_consen  158 QKIERVREMIRELN  171 (178)
T ss_dssp             --HHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHC
Confidence            12345555555543

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.63  E-value=0.00042  Score=56.52  Aligned_cols=140  Identities=14%  Similarity=0.096  Sum_probs=77.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcC------C---------------CCCCcceeEEEEEEE---------E-CCEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFF------D---------------SKSTIGVEFQTRTVT---------I-NGKII   77 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~------~---------------~~~~~~~~~~~~~~~---------~-~~~~~   77 (237)
                      -+++++|++|+||||++..+...-...      .               +....+..+....-.         . ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            589999999999999998764321100      0               000011111110000         0 00135


Q ss_pred             EEEEEeCCCcchhchh----hHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC
Q 026548           78 KAQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV  151 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~  151 (237)
                      .+.|+||+|.......    +..++  ...+-+++|+|++...  +++..++..+..    -.+--+|+||.|-..    
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~----  225 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA----  225 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCC----
Confidence            6789999996533221    22222  2446689999986421  233333333332    123458899999644    


Q ss_pred             CHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          152 SAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                      ..-.+..++...+.|+..++  +|.++.+
T Consensus       226 ~~G~~l~~~~~~~~Pi~~it--~Gq~vp~  252 (270)
T PRK06731        226 SSGELLKIPAVSSAPIVLMT--DGQDVKK  252 (270)
T ss_pred             CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence            23467778888899977776  5665553

>TIGR00959 ffh signal recognition particle protein

Probab=97.63  E-value=0.00044  Score=60.04  Aligned_cols=85  Identities=15%  Similarity=0.042  Sum_probs=50.3

Q ss_pred             EEEEEEeCCCcchhchhh----Hhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           77 IKAQIWDTAGQERYRAVT----SAY--YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      +.+.|+||+|........    ..+  .-..|.+++|+|+...+   +...+...+....  + ..-+|+||.|...   
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~---  253 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDA---  253 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence            457899999954332211    111  23568889999987543   3333333343222  1 2357899999532   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 026548          151 VSAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~S  171 (237)
                       ....+..++...++|+.++.
T Consensus       254 -~~G~~lsi~~~~~~PI~fi~  273 (428)
T TIGR00959       254 -RGGAALSVRSVTGKPIKFIG  273 (428)
T ss_pred             -cccHHHHHHHHHCcCEEEEe
Confidence             12247777888888877765

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.63  E-value=0.00068  Score=58.94  Aligned_cols=85  Identities=16%  Similarity=0.019  Sum_probs=48.9

Q ss_pred             EEEEEEeCCCcchhchh----hHhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           77 IKAQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      +.+.|+||+|.......    ...+.  -..+.+++|+|+...+   +.......+....  + ..-+|+||.|....  
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~r--  255 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDAR--  255 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCccc--
Confidence            56889999995432211    11111  2567789999986532   2223333333221  1 23577899996331  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 026548          151 VSAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~S  171 (237)
                        .-.+.......++|+.+++
T Consensus       256 --gG~alsi~~~~~~PI~fig  274 (433)
T PRK10867        256 --GGAALSIRAVTGKPIKFIG  274 (433)
T ss_pred             --ccHHHHHHHHHCcCEEEEe
Confidence              2236777778888877765

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.61  E-value=4.8e-05  Score=63.88  Aligned_cols=58  Identities=22%  Similarity=0.389  Sum_probs=43.7

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      ..+-++++|+|-||+||||+||+|..+..-... ...|.+.....+..+.   .+.|.|.||
T Consensus       249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPg  306 (435)
T KOG2484|consen  249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPG  306 (435)
T ss_pred             cCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCc
Confidence            355799999999999999999999988863322 3444555556666654   477999999

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.57  E-value=0.00013  Score=61.17  Aligned_cols=65  Identities=20%  Similarity=0.089  Sum_probs=39.7

Q ss_pred             EEEEEEEEeCCCcchhc-hhhHh-----hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548           75 KIIKAQIWDTAGQERYR-AVTSA-----YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL  145 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~-~~~~~-----~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~  145 (237)
                      +.+.++|.||.|..... .+...     -.-..|-+|+|+|++-.++.......++.....      --|++||.|.
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdv------g~vIlTKlDG  252 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDV------GAVILTKLDG  252 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhcc------ceEEEEeccc
Confidence            34678999999944332 22221     123568899999999877666655544443221      1356677775

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.45  E-value=0.0006  Score=59.16  Aligned_cols=128  Identities=18%  Similarity=0.257  Sum_probs=79.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC--------------CCCCcceeEEEEEEEE----------------CCEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD--------------SKSTIGVEFQTRTVTI----------------NGKI   76 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~----------------~~~~   76 (237)
                      +..++-|+.+..-|||||-..|....-...              .....+++....-+..                ++..
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~   97 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG   97 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence            456788999999999999998864321111              0011122222222221                3445


Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC-CCcCCCHHH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV-DMRAVSAED  155 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~-~~~~~~~~~  155 (237)
                      +-+.|+|.||+-.|.+.....++-.|+.++|+|.-+.--.+.-.-+.+.+.+    .+.-++++||.|.. -+-++..|+
T Consensus        98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~Ee  173 (842)
T KOG0469|consen   98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQEE  173 (842)
T ss_pred             eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHHH
Confidence            7799999999999999999999999999999998764222221112222332    34456889999942 123445554


Q ss_pred             HHH
Q 026548          156 AVE  158 (237)
Q Consensus       156 ~~~  158 (237)
                      .-+
T Consensus       174 Lyq  176 (842)
T KOG0469|consen  174 LYQ  176 (842)
T ss_pred             HHH
Confidence            433

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.42  E-value=0.00063  Score=49.85  Aligned_cols=106  Identities=15%  Similarity=0.123  Sum_probs=59.7

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECC
Q 026548           32 VVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT  111 (237)
Q Consensus        32 ~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~  111 (237)
                      +.-|..|+|||++.-.+...-.. ......-.+.....   ....+.+.++|+|+..  .......+..+|.++++++.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~~---~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGL---ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCCC---CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            34568899999987655322110 00011101100000   0011567899998753  333456788999999999876


Q ss_pred             ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548          112 KRQSFDHVARWVEELRAHADSSIRIILIGNKSDL  145 (237)
Q Consensus       112 ~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~  145 (237)
                       ..++......++.+.... ...++.+|+|+.+.
T Consensus        78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence             444444444444444332 34577899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.41  E-value=0.00054  Score=53.94  Aligned_cols=60  Identities=32%  Similarity=0.319  Sum_probs=36.2

Q ss_pred             EEEEeC-CCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCC-CcEEEEEeCCCC
Q 026548           79 AQIWDT-AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDL  145 (237)
Q Consensus        79 ~~l~Dt-~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~p~vvv~nK~D~  145 (237)
                      +.+.|| +|.+.|..   ...+++|.+|+|+|.+- .++...++... +...  .+ .++.+|+||.|-
T Consensus       136 ~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~-~sl~taeri~~-L~~e--lg~k~i~~V~NKv~e  197 (255)
T COG3640         136 VVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSY-KSLRTAERIKE-LAEE--LGIKRIFVVLNKVDE  197 (255)
T ss_pred             EEEEecccchhhhcc---ccccCCCEEEEEeCCcH-HHHHHHHHHHH-HHHH--hCCceEEEEEeeccc
Confidence            445665 44444433   45578999999999864 33333322222 2222  24 789999999984

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.40  E-value=0.0009  Score=54.94  Aligned_cols=105  Identities=17%  Similarity=0.221  Sum_probs=62.9

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc---------------
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE---------------   88 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------------   88 (237)
                      ...+..+++++|++|.|||+++++|....... .....             ..+.+.++.+|...               
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            33445689999999999999999999876322 21110             11233344444311               


Q ss_pred             ---------hhchhhHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcC-CCCcEEEEEeC
Q 026548           89 ---------RYRAVTSAYYRGALGAVVVYDITK---RQSFDHVARWVEELRAHAD-SSIRIILIGNK  142 (237)
Q Consensus        89 ---------~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK  142 (237)
                               ........+++....=++++|--+   ..+....+..++.++.... ..+|+|.+|++
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence                     112223356677777889998432   1233344455555555544 68999999876

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.38  E-value=0.0012  Score=45.57  Aligned_cols=82  Identities=15%  Similarity=0.112  Sum_probs=48.7

Q ss_pred             EEEEc-CCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           31 VVVIG-DSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        31 i~v~G-~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      |.+.| ..|+||||+...|...-.. ...+.       ..+..+.. +.+.++|+|+.....  ....+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56666 6799999988765432211 11111       11111111 567899999864332  3367788999999988


Q ss_pred             CCChhhHHHHHHHHH
Q 026548          110 ITKRQSFDHVARWVE  124 (237)
Q Consensus       110 ~~~~~s~~~~~~~~~  124 (237)
                      .+ ..+...+..+++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            65 445555555554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.38  E-value=0.0014  Score=44.10  Aligned_cols=69  Identities=17%  Similarity=0.120  Sum_probs=44.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh-hHhhhcCCcEEEEEEE
Q 026548           31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV-TSAYYRGALGAVVVYD  109 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~ilv~d  109 (237)
                      +++.|..|+||||+...+...-....+          +...++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~----------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK----------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999877644321111          111122    4679999875443321 2455678899999988


Q ss_pred             CCCh
Q 026548          110 ITKR  113 (237)
Q Consensus       110 ~~~~  113 (237)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            7653

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.31  E-value=0.0018  Score=46.81  Aligned_cols=26  Identities=15%  Similarity=0.345  Sum_probs=22.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      ...++++|++|+|||+|++.+...-.
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            34799999999999999999886653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.28  E-value=0.00051  Score=56.14  Aligned_cols=59  Identities=20%  Similarity=0.362  Sum_probs=37.6

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC------CCCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF------DSKSTIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      ....++.|+|-||+|||||+|++...+...      ...+.++...... +.+...+ .+.+.||||
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp-~vy~iDTPG  205 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRP-PVYLIDTPG  205 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCC-ceEEecCCC
Confidence            346789999999999999999886543321      2224443333222 3343333 367999999

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.24  E-value=0.00055  Score=58.51  Aligned_cols=85  Identities=18%  Similarity=-0.022  Sum_probs=49.7

Q ss_pred             EEEEEEeCCCcchhchhhH------hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           77 IKAQIWDTAGQERYRAVTS------AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      +.+.|+||+|........-      .-.-+.|-+++|+|+.-.+...+....++.-...      .=||+||.|....  
T Consensus       183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i------tGvIlTKlDGdaR--  254 (451)
T COG0541         183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI------TGVILTKLDGDAR--  254 (451)
T ss_pred             CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC------ceEEEEcccCCCc--
Confidence            4688999999554433221      1224668899999998766555554444432221      2488999996431  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 026548          151 VSAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~S  171 (237)
                        ---+.......+.|+.++.
T Consensus       255 --GGaALS~~~~tg~PIkFiG  273 (451)
T COG0541         255 --GGAALSARAITGKPIKFIG  273 (451)
T ss_pred             --chHHHhhHHHHCCCeEEEe
Confidence              1134444455677765554

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.23  E-value=0.0035  Score=51.99  Aligned_cols=93  Identities=18%  Similarity=0.143  Sum_probs=54.1

Q ss_pred             EEEEEEeCCCcchhch-h------hHhhhcCC-----cEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 026548           77 IKAQIWDTAGQERYRA-V------TSAYYRGA-----LGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKS  143 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~-~------~~~~~~~~-----d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~  143 (237)
                      +.+.|+||+|.-.-.. +      ..+.+...     +-+++++|++-.+ ++... +.++.....      --+++||.
T Consensus       222 ~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA-k~F~eav~l------~GiIlTKl  294 (340)
T COG0552         222 IDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA-KIFNEAVGL------DGIILTKL  294 (340)
T ss_pred             CCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH-HHHHHhcCC------ceEEEEec
Confidence            5678999999322111 1      12223333     3388888998754 33333 333332222      24889999


Q ss_pred             CCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       144 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      |-...-.    .+..++..+++|+.++.  -|++++++-
T Consensus       295 DgtAKGG----~il~I~~~l~~PI~fiG--vGE~~~DL~  327 (340)
T COG0552         295 DGTAKGG----IILSIAYELGIPIKFIG--VGEGYDDLR  327 (340)
T ss_pred             ccCCCcc----eeeeHHHHhCCCEEEEe--CCCChhhcc
Confidence            9543222    34566778899988886  566666654

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.22  E-value=0.0003  Score=50.02  Aligned_cols=22  Identities=18%  Similarity=0.453  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

...

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.16  E-value=0.0033  Score=43.75  Aligned_cols=62  Identities=23%  Similarity=0.126  Sum_probs=41.3

Q ss_pred             EEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 026548           78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNK  142 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK  142 (237)
                      .+.++|+|+....  .....+..+|.++++++.+ ..+...+..+++.+...... ...+.+|+|+
T Consensus        44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            5779999886433  2345678899999988765 45566666666666654433 3456677774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK08118 topology modulation protein; Reviewed

Probab=97.15  E-value=0.00036  Score=52.89  Aligned_cols=22  Identities=27%  Similarity=0.607  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      +|+|+|++|||||||.+.|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988754

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.14  E-value=0.0058  Score=46.61  Aligned_cols=86  Identities=26%  Similarity=0.243  Sum_probs=59.9

Q ss_pred             EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHH
Q 026548           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAE  154 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~  154 (237)
                      ..+.+.++|||+....  .....+..+|.+++++..+. .+...+..+++.+...   +.|+.+|+|++|...   ...+
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence            3467889999975432  34456788999999998774 4555666666655543   567899999998643   1345


Q ss_pred             HHHHHHHHcCCeEEE
Q 026548          155 DAVEFAEDQGLFFSE  169 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~  169 (237)
                      +..++.+..+++++-
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            677788888887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.12  E-value=0.00051  Score=42.69  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -.+|.|+.|||||||+.++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998754

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.11  E-value=0.00039  Score=50.86  Aligned_cols=21  Identities=29%  Similarity=0.591  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |+++|+||||||||++.|...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998743

...

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.11  E-value=0.012  Score=49.86  Aligned_cols=98  Identities=18%  Similarity=0.140  Sum_probs=53.3

Q ss_pred             EEEEEEeCCCcchhchhhHhhh-------cCCcEEEEEEECCChhh--H--------------------HHHHHH-HHHH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYY-------RGALGAVVVYDITKRQS--F--------------------DHVARW-VEEL  126 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~-------~~~d~~ilv~d~~~~~s--~--------------------~~~~~~-~~~~  126 (237)
                      +...++++.|......+...+.       -..|++|.|+|+.+-..  +                    ..+..+ ..++
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            3566888888666555444431       14578999999874211  0                    001111 2333


Q ss_pred             HHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-cC--CeEEEEcCCCCCCHHHHHH
Q 026548          127 RAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-QG--LFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       127 ~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~--~~~~~~Sa~~~~gi~~~~~  183 (237)
                      ...      =+|++||+|+....+  .+.+.+..+. .+  .+++++. ........+|.
T Consensus       173 ~~A------D~IvlnK~Dl~~~~~--l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~  223 (341)
T TIGR02475       173 ACA------DLVILNKADLLDAAG--LARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG  223 (341)
T ss_pred             HhC------CEEEEeccccCCHHH--HHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence            222      289999999876332  3345555554 33  3566654 33455665554

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.10  E-value=0.00043  Score=52.95  Aligned_cols=22  Identities=23%  Similarity=0.658  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      +|+|+|+|||||||+.+.|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999876

>PRK07261 topology modulation protein; Provisional

Probab=97.07  E-value=0.00047  Score=52.45  Aligned_cols=22  Identities=32%  Similarity=0.626  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      +|+|+|++|||||||.+.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998644

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.02  E-value=0.0097  Score=45.48  Aligned_cols=24  Identities=13%  Similarity=0.239  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      =.++++|+.|+|||||++.+.+..
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            368999999999999999988765

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.01  E-value=0.00047  Score=51.88  Aligned_cols=22  Identities=18%  Similarity=0.590  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.00  E-value=0.00026  Score=59.63  Aligned_cols=84  Identities=20%  Similarity=0.188  Sum_probs=50.6

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh--chhhHhhhcCCc
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY--RAVTSAYYRGAL  102 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~~~~~~d  102 (237)
                      ....|-|.++|.||+||||+||.|...++-... |..+-+-....+++-.   .+-|+|+||..-.  .......+++  
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLmk---rIfLIDcPGvVyps~dset~ivLkG--  377 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLMK---RIFLIDCPGVVYPSSDSETDIVLKG--  377 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHHh---ceeEecCCCccCCCCCchHHHHhhc--
Confidence            445789999999999999999999988764433 2222111111122222   3669999994322  2333444443  


Q ss_pred             EEEEEEECCChhh
Q 026548          103 GAVVVYDITKRQS  115 (237)
Q Consensus       103 ~~ilv~d~~~~~s  115 (237)
                       ++=|-.+.+++.
T Consensus       378 -vVRVenv~~pe~  389 (572)
T KOG2423|consen  378 -VVRVENVKNPED  389 (572)
T ss_pred             -eeeeeecCCHHH
Confidence             466667777653

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.00  E-value=0.0042  Score=53.92  Aligned_cols=54  Identities=28%  Similarity=0.274  Sum_probs=33.0

Q ss_pred             hhchhhHhhhcCCcEEEEEEE-CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548           89 RYRAVTSAYYRGALGAVVVYD-ITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus        89 ~~~~~~~~~~~~~d~~ilv~d-~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                      +.-...+.+++++++  +++| .+.--+...+..++..+......+.-+|++-+|.+
T Consensus       147 QRVEIlKaLyr~a~i--LILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~  201 (501)
T COG3845         147 QRVEILKALYRGARL--LILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK  201 (501)
T ss_pred             HHHHHHHHHhcCCCE--EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence            334456677888884  4455 23333445555666666665556788888877764

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.96  E-value=0.0003  Score=53.44  Aligned_cols=25  Identities=28%  Similarity=0.508  Sum_probs=22.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      ..-++|.||+|+|||||+++|....
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3468999999999999999999877

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=96.96  E-value=0.0018  Score=50.20  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHh
Q 026548           29 FKVVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~   49 (237)
                      .-+.|+|+.||||||+++.+.
T Consensus         4 ya~lV~GpAgSGKSTyC~~~~   24 (273)
T KOG1534|consen    4 YAQLVMGPAGSGKSTYCSSMY   24 (273)
T ss_pred             eeEEEEccCCCCcchHHHHHH
Confidence            457899999999999999874

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=96.95  E-value=0.0085  Score=47.42  Aligned_cols=102  Identities=11%  Similarity=0.049  Sum_probs=64.3

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF--DHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAE  154 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~  154 (237)
                      +.+.|+|+.|.....  ....+..+|.+|+=+-.+..+.-  .....|+..+.......+|.-|+.|++.-.. ......
T Consensus        84 ~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~~  160 (231)
T PF07015_consen   84 FDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQR  160 (231)
T ss_pred             CCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHHH
Confidence            568899998864433  44556679988887766643322  2234455555554557899999999986321 111122


Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          155 DAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      .+.++..  ++|++.+.....+...++|.
T Consensus       161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  161 IISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHh--cCCccccccccHHHHHHHHH
Confidence            2333333  58889988888777777776

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.95  E-value=0.00086  Score=52.77  Aligned_cols=68  Identities=13%  Similarity=0.161  Sum_probs=38.4

Q ss_pred             EEEEEeCCCcchhch----h--hHhhhcCCcEEEEEEECCC------hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548           78 KAQIWDTAGQERYRA----V--TSAYYRGALGAVVVYDITK------RQSFDHVARWVEELRAHADSSIRIILIGNKSDL  145 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~----~--~~~~~~~~d~~ilv~d~~~------~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~  145 (237)
                      ...++|+||+-+...    +  +-.++...|.=+.++...|      +..+  +..++-.+.....-..|-|=|+.|+|+
T Consensus        98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~--iS~lL~sl~tMl~melphVNvlSK~Dl  175 (290)
T KOG1533|consen   98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKF--ISSLLVSLATMLHMELPHVNVLSKADL  175 (290)
T ss_pred             cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHH--HHHHHHHHHHHHhhcccchhhhhHhHH
Confidence            466999999655322    1  2233444666555555544      4333  223333333333346788888999997


Q ss_pred             CC
Q 026548          146 VD  147 (237)
Q Consensus       146 ~~  147 (237)
                      ..
T Consensus       176 ~~  177 (290)
T KOG1533|consen  176 LK  177 (290)
T ss_pred             HH
Confidence            54

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.95  E-value=0.0033  Score=45.56  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999988653

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.94  E-value=0.00085  Score=42.84  Aligned_cols=21  Identities=24%  Similarity=0.561  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998765

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.90  E-value=0.0058  Score=54.48  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      =+++.||+|+||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4677999999999999988654

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.90  E-value=0.00086  Score=48.71  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      .++|+|+.|+|||||++.|.+...
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             EEEEEccCCCccccceeeeccccc
Confidence            689999999999999999887763

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.90  E-value=0.00071  Score=52.19  Aligned_cols=24  Identities=17%  Similarity=0.231  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .=|+|+|++|||||||+++|....
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            348999999999999999998754

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.89  E-value=0.0011  Score=51.68  Aligned_cols=24  Identities=42%  Similarity=0.477  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      .++++|++|||||||++.+-+...
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            589999999999999999887764

>PRK01889 GTPase RsgA; Reviewed

Probab=96.84  E-value=0.0013  Score=56.03  Aligned_cols=25  Identities=32%  Similarity=0.523  Sum_probs=21.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      -.++++|.+|+|||||+|.|.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            3799999999999999999987543

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.80  E-value=0.015  Score=47.91  Aligned_cols=86  Identities=22%  Similarity=0.262  Sum_probs=49.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcC--CcEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG--ALGAVVV  107 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~ilv  107 (237)
                      -|+|.|.+||||||+++.|-...+                .          .+|-.....+..+.......  .+.+.++
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~~~g~----------------~----------~~d~~~~~L~~~l~~~~~~~~~~~~~av~   61 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALEDLGY----------------Y----------CVDNLPPSLLPKLVELLAQSGGIRKVAVV   61 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHHHcCC----------------e----------EECCcCHHHHHHHHHHHHhcCCCCCeEEE
Confidence            689999999999999999842211                0          12322222223333322222  3557888


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548          108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                      +|+.+...+......+..+...   +.++.+|.-.++
T Consensus        62 iD~r~~~~~~~~~~~~~~L~~~---g~~~~iI~L~a~   95 (288)
T PRK05416         62 IDVRSRPFFDDLPEALDELRER---GIDVRVLFLDAS   95 (288)
T ss_pred             EccCchhhHHHHHHHHHHHHHc---CCcEEEEEEECC
Confidence            8988765445566666666653   344444544444

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.79  E-value=0.0012  Score=47.26  Aligned_cols=25  Identities=12%  Similarity=0.290  Sum_probs=21.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      ..++|+|++|+||||+++.+...-.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            3799999999999999999987654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.79  E-value=0.041  Score=41.59  Aligned_cols=84  Identities=14%  Similarity=-0.032  Sum_probs=50.1

Q ss_pred             EEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHH
Q 026548           78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAV  157 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~  157 (237)
                      .+.++|+|+....  .....+..+|.+|++++.+. .+...+..++..+...  ......+++|+.+....  ...+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence            5789999975433  24455788999999988764 3444454555554442  12346789999985431  1222234


Q ss_pred             HHHHHcCCeEE
Q 026548          158 EFAEDQGLFFS  168 (237)
Q Consensus       158 ~~~~~~~~~~~  168 (237)
                      ++.+.++.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            45555666644

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>TIGR00235 udk uridine kinase

Probab=96.77  E-value=0.0014  Score=51.31  Aligned_cols=26  Identities=15%  Similarity=0.211  Sum_probs=22.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      +...-|+|+|++|||||||++.|.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            44567999999999999999998764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.76  E-value=0.0014  Score=47.92  Aligned_cols=21  Identities=43%  Similarity=0.713  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10646 ADP-binding protein; Provisional

Probab=96.76  E-value=0.0087  Score=44.44  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -|++-|+-|+|||||++.+...
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~   51 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQA   51 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999998654

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.74  E-value=0.0016  Score=51.78  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      =|.++|++|+|||||++.+.+-..
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            389999999999999999887654

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.73  E-value=0.0013  Score=51.50  Aligned_cols=26  Identities=35%  Similarity=0.555  Sum_probs=21.9

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      ...-|+|+|++|||||||++.|....
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            44568899999999999999997543

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.73  E-value=0.0014  Score=47.02  Aligned_cols=22  Identities=14%  Similarity=0.354  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 026548           31 VVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999987654

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.73  E-value=0.0013  Score=46.99  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 026548           31 VVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      |+|.|.+||||||+++.|...-
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999887653

...

>PRK06217 hypothetical protein; Validated

Probab=96.71  E-value=0.0014  Score=50.36  Aligned_cols=22  Identities=14%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      +|+|+|.+|||||||.++|...
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998754

>PRK04195 replication factor C large subunit; Provisional

Probab=96.69  E-value=0.018  Score=51.13  Aligned_cols=25  Identities=16%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .-.++|.|++|+||||+++.|...-
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3469999999999999999987643

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.69  E-value=0.0019  Score=51.09  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      -|+|+|++|||||||++-+-+...
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            489999999999999998876553

>PRK14530 adenylate kinase; Provisional

Probab=96.65  E-value=0.0016  Score=51.31  Aligned_cols=21  Identities=19%  Similarity=0.509  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +|+|+|+|||||||+.+.|..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998853

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=96.64  E-value=0.00096  Score=60.91  Aligned_cols=123  Identities=15%  Similarity=0.181  Sum_probs=74.4

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEE---------------------------------
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRT---------------------------------   69 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~---------------------------------   69 (237)
                      ........|+|+|.+++||||.++.+.+..+.+.....++...-...                                 
T Consensus        24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI  103 (657)
T KOG0446|consen   24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI  103 (657)
T ss_pred             CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence            44456788999999999999999999997665433222111110000                                 


Q ss_pred             --------------------EEE-CCEEEEEEEEeCCCc-------------chhchhhHhhhcCCcEEEEEEECCChhh
Q 026548           70 --------------------VTI-NGKIIKAQIWDTAGQ-------------ERYRAVTSAYYRGALGAVVVYDITKRQS  115 (237)
Q Consensus        70 --------------------~~~-~~~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s  115 (237)
                                          ..+ .-....+.++|.||.             .....+...++..-+.+|+.+...+-+ 
T Consensus       104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d-  182 (657)
T KOG0446|consen  104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD-  182 (657)
T ss_pred             HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh-
Confidence                                000 001134668999992             234557777888888888888766521 


Q ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548          116 FDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      +. .-.++...++....+..++.|++|.|+..
T Consensus       183 ~a-ts~alkiarevDp~g~RTigvitK~Dlmd  213 (657)
T KOG0446|consen  183 IA-TSPALVVAREVDPGGSRTLEVITKFDFMD  213 (657)
T ss_pred             hh-cCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence            11 12344445555445667788888888643

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.63  E-value=0.0031  Score=45.06  Aligned_cols=22  Identities=18%  Similarity=0.469  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -|++-|+-|||||||++.|...
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~~   38 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLARA   38 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988753

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.62  E-value=0.0083  Score=46.70  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 026548           31 VVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      |+|+|++||||||+++.+...-
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999877543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.61  E-value=0.0019  Score=49.74  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .|+|+|++|||||||++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999996653

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.60  E-value=0.017  Score=51.06  Aligned_cols=21  Identities=29%  Similarity=0.514  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ++|.|++|+||||-++.|..-
T Consensus       113 LLltGPsGcGKSTtvkvLske  133 (634)
T KOG1970|consen  113 LLLTGPSGCGKSTTVKVLSKE  133 (634)
T ss_pred             EEEeCCCCCCchhHHHHHHHh
Confidence            778999999999999988643

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.58  E-value=0.0088  Score=43.95  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      =|++-|+-|||||||.+.+...-
T Consensus        27 Vv~L~GdLGAGKTtf~rgi~~~L   49 (149)
T COG0802          27 VVLLSGDLGAGKTTLVRGIAKGL   49 (149)
T ss_pred             EEEEEcCCcCChHHHHHHHHHHc
Confidence            48899999999999999987543

>PRK03839 putative kinase; Provisional

Probab=96.58  E-value=0.0019  Score=49.35  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      +|+|+|.|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988654

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.56  E-value=0.0019  Score=49.52  Aligned_cols=21  Identities=14%  Similarity=0.339  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHh
Q 026548           29 FKVVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~   49 (237)
                      .-|+|+|++||||||+++.|.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999987

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.55  E-value=0.046  Score=40.19  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            57899999999999999998765

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.55  E-value=0.0019  Score=49.30  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.54  E-value=0.0021  Score=49.02  Aligned_cols=23  Identities=30%  Similarity=0.570  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -|+|+|++|||||||++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            48999999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.011  Score=49.25  Aligned_cols=26  Identities=31%  Similarity=0.457  Sum_probs=22.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      ..-|.++|..|+|||||++-|.++..
T Consensus       188 f~VIgvlG~QgsGKStllslLaans~  213 (491)
T KOG4181|consen  188 FTVIGVLGGQGSGKSTLLSLLAANSL  213 (491)
T ss_pred             eeEEEeecCCCccHHHHHHHHhccCh
Confidence            45688999999999999998887654

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.51  E-value=0.0023  Score=49.28  Aligned_cols=25  Identities=16%  Similarity=0.299  Sum_probs=21.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .-.++|+|++|||||||++.|.+.-
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3479999999999999999988654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.50  E-value=0.0023  Score=47.02  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .|.|+|+.|||||||++.|+..-
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999987654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.49  E-value=0.0066  Score=46.19  Aligned_cols=44  Identities=23%  Similarity=0.200  Sum_probs=28.2

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      |++++|+|+.++.+... ..+.+.+. ....+.|+++|+||+|+..
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999988643221 12222211 1124689999999999964

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.47  E-value=0.0021  Score=49.89  Aligned_cols=21  Identities=19%  Similarity=0.423  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.47  E-value=0.0025  Score=44.29  Aligned_cols=20  Identities=30%  Similarity=0.634  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHh
Q 026548           30 KVVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~   49 (237)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            58999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.47  E-value=0.0024  Score=51.52  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -++++|+.|||||||++.+.+-
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999998763

>PRK13949 shikimate kinase; Provisional

Probab=96.46  E-value=0.0025  Score=48.39  Aligned_cols=22  Identities=14%  Similarity=0.443  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      +|+|+|++||||||+.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999987643

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.45  E-value=0.0027  Score=46.24  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .|+++|++|+|||+|++.+....
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999876543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.44  E-value=0.0027  Score=48.49  Aligned_cols=21  Identities=38%  Similarity=0.389  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHh
Q 026548           29 FKVVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~   49 (237)
                      -.++|+|+.|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            478999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.44  E-value=0.0027  Score=50.76  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=22.5

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      +..++++|+|++|||||+|+..|+..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            34689999999999999999988754

This is thought to be an ATPase involved in viral DNA packaging [].

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.43  E-value=0.0026  Score=51.09  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -++|+|+.|+|||||++.+++-
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLGl   53 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILGL   53 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999983

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.43  E-value=0.0028  Score=49.97  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            68999999999999999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.42  E-value=0.0073  Score=47.17  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      =.+++||+|+|||||++.|-.
T Consensus        35 VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          35 VTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             eEEEECCCCcCHHHHHHHHHh
Confidence            368999999999999987654

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.42  E-value=0.0026  Score=49.09  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      +|+|+|+|||||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988754

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK14531 adenylate kinase; Provisional

Probab=96.42  E-value=0.0028  Score=48.70  Aligned_cols=23  Identities=17%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .+|+++|+|||||||+.+.|...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988543

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.41  E-value=0.0033  Score=52.69  Aligned_cols=23  Identities=39%  Similarity=0.495  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 026548           31 VVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      ++++||+|||||||++.+.+-..
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            89999999999999999987654

>PRK14532 adenylate kinase; Provisional

Probab=96.41  E-value=0.0028  Score=48.79  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +|+++|+|||||||+.++|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		3e-62
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		3e-60
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		4e-60
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-59
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		3e-59
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		5e-59
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		6e-59
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-58
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-58
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-55
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		4e-55
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		4e-55
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-47
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		8e-47
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		6e-45
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		4e-44
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-43
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-43
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-43
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-43
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-42
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-42
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-42
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		3e-42
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		4e-42
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		5e-42
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-42
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		6e-42
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		6e-42
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		9e-42
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-41
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		3e-41
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		6e-41
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		6e-41
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-40
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		5e-40
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		7e-40
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-39
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-39
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-39
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		4e-39
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-38
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-38
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-38
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-38
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-38
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-37
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-37
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-37
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-37
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-37
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		6e-37
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		9e-37
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-36
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-36
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-36
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-36
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-36
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-36
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		8e-36
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		1e-35
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-35
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-35
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-35
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		8e-35
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-34
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-34
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-34
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-32
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		6e-32
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		7e-32
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		8e-32
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		9e-32
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-31
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-31
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-31
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-31
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-31
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-31
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		6e-31
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-31
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		7e-31
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-30
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		4e-30
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-29
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-29
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		4e-29
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		4e-29
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-28
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-28
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		9e-28
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		9e-27
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-26
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-26
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		5e-26
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-25
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		1e-24
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-23
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-23
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-23
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		5e-23
1vg1_A	185	Gdp-bound Rab7 Length = 185		8e-23
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-22
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-22
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-22
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-22
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		4e-22
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-21
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-21
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		5e-20
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-19
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-19
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-19
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-19
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-19
1byu_A	216	Canine Gdp-Ran Length = 216		1e-19
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-19
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-19
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-19
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-19
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		3e-19
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		3e-19
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-18
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-18
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-18
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		2e-18
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-18
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-18
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-18
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-18
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-18
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		7e-18
3icq_B	171	Karyopherin Nuclear State Length = 171		7e-18
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		6e-17
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-16
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-16
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		4e-16
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		5e-16
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		8e-16
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-15
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-15
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		4e-15
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		5e-15
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		5e-15
4q21_A	189	Molecular Switch For Signal Transduction: Structura		5e-15
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		7e-15
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		8e-15
1mh1_A	186	Small G-Protein Length = 186		9e-15
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-14
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-14
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-14
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-14
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-14
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-14
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-14
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-14
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-14
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-14
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-14
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-14
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-14
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-14
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-14
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-14
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-14
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-14
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-14
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-14
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-14
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		3e-14
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		3e-14
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		4e-14
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		4e-14
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		4e-14
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		4e-14
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		4e-14
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		5e-14
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		5e-14
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		5e-14
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		5e-14
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		6e-14
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		6e-14
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		6e-14
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		6e-14
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-14
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		7e-14
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		7e-14
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-14
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		8e-14
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		1e-13
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-13
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-13
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-13
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-13
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-13
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-13
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-13
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-13
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-13
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-13
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-13
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-13
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-13
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-13
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-13
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-13
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		2e-13
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-13
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		3e-13
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		3e-13
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		3e-13
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		3e-13
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		4e-13
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		5e-13
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		6e-13
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		6e-13
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		6e-13
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		8e-13
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		9e-13
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-12
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-12
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-12
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-12
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-12
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-12
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		3e-12
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-12
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		3e-12
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-12
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		5e-12
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		6e-12
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		6e-12
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		6e-12
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		6e-12
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		6e-12
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		6e-12
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		6e-12
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		7e-12
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		7e-12
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		7e-12
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		8e-12
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		8e-12
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		8e-12
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		8e-12
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		9e-12
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		9e-12
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-11
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-11
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-11
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-11
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-11
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-11
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-11
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-11
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-11
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-11
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		3e-11
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		3e-11
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-11
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-11
2kb0_A	178	Cdc42(T35a) Length = 178		3e-11
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		4e-11
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		4e-11
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		5e-11
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		5e-11
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		5e-11
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		7e-11
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		8e-11
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-10
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-10
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-10
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-10
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-10
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		4e-10
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		7e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		7e-10
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-08
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-08
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		4e-08
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		5e-08
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		5e-08
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		6e-08
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		6e-08
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		6e-08
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		6e-08
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		6e-08
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		9e-08
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		9e-08
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-07
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		4e-07
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		4e-07
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		4e-07
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		5e-07
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		8e-07
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		9e-07
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		1e-06
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-06
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		3e-06
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-06
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		3e-06
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		3e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		3e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		4e-06
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		5e-06
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		6e-06
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		6e-06
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		8e-06
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		1e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		2e-05
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		3e-05
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		4e-05
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		4e-05
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		4e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		4e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		5e-05
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		6e-05
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		9e-05
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		9e-05
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		2e-04
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		2e-04
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		4e-04
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		4e-04

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/216 (54%), Positives = 151/216 (69%), Gaps = 8/216 (3%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D +FK+V+IGDS VGKS +LSRFTKNEF  DSKSTIGVEF TRT+ I GK IKAQIWDTA
Sbjct: 11  DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTA 70
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQERYRA+TSAYYRGA+GA++VYDI+K  S+++   W+ ELR +AD ++ + LIGNKSDL
Sbjct: 71  GQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDL 130
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECG---- 201
             +RAV  E++  FA++  L F+E SALN +NVD AF  L+  IY  VSK +++ G    
Sbjct: 131 AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSA 190
Query: 202 NGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCSC 237
           NG  +G     G  I +    +    E KK +  +C
Sbjct: 191 NGNANGASAPNGPTISLTPTPN----ENKKANGNNC 222

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  227 bits (579), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/194 (58%), Positives = 145/194 (74%), Gaps = 10/194 (5%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++GK IKAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQERYR +TSAYYRGA+GA++VYDI K  ++++V RW++ELR HADS+I I+L+GNKSDL
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL------- 198
             +RAV  ++A  FAE   L F E SAL+  NV+ AF  +L EIY  VS+K++       
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182
Query: 199 -ECGNGKVD--GPP 209
              GN  VD   PP
Sbjct: 183 ESPGNNVVDISVPP 196

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  227 bits (579), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 137/168 (81%)
Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
           D+ DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++GK IKAQIW
Sbjct: 24  DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
           DTAGQERYRA+TSAYYRGA+GA++VYDI K  ++++V RW++ELR HADS+I I+L+GNK
Sbjct: 84  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           SDL  +RAV  ++A  FAE  GL F E SAL+  NV+ AF  +L EIY
Sbjct: 144 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/173 (62%), Positives = 139/173 (80%), Gaps = 1/173 (0%)
Query: 19  NMIP-DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKII 77
           +++P    DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++GK I
Sbjct: 10  SLVPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 69
Query: 78  KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRII 137
           KAQIWDTAGQERYRA+TSAYYRGA+GA++VYDI K  ++++V RW++ELR HADS+I I+
Sbjct: 70  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 129
Query: 138 LIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           L+GNKSDL  +RAV  ++A  FAE  GL F E SAL+  NV+ AF  +L EIY
Sbjct: 130 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  224 bits (571), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 107/168 (63%), Positives = 136/168 (80%)
Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
           D+ DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++GK IKAQIW
Sbjct: 24  DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
           DTAG ERYRA+TSAYYRGA+GA++VYDI K  ++++V RW++ELR HADS+I I+L+GNK
Sbjct: 84  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           SDL  +RAV  ++A  FAE  GL F E SAL+  NV+ AF  +L EIY
Sbjct: 144 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  224 bits (570), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 107/169 (63%), Positives = 136/169 (80%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
            D+ DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++GK IKAQI
Sbjct: 2   SDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 61
Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDTAG ERYRA+TSAYYRGA+GA++VYDI K  ++++V RW++ELR HADS+I I+L+GN
Sbjct: 62  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 121
Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           KSDL  +RAV  ++A  FAE  GL F E SAL+  NV+ AF  +L EIY
Sbjct: 122 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  223 bits (569), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 105/176 (59%), Positives = 141/176 (80%), Gaps = 1/176 (0%)
Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQI 81
           D  DY+FK+V+IGDS VGKS +LSRFT++EF  +SKSTIGVEF T+++ + N KIIKAQI
Sbjct: 2   DYYDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDTAGQERYRA+TSAYYRGA+GA++VYDITK+ SF+++ +W++ELR +ADS+I I+L+GN
Sbjct: 62  WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGN 121
Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKE 197
           KSDL  +R ++  DA ++A+ + L F E SAL   NV+ AF +LL EIY    KK+
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQ 177

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/168 (63%), Positives = 135/168 (80%)
Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
           D+ DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++GK IKAQIW
Sbjct: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
           DTAG ERYRA+TSAYYRGA+GA++VYDI K  ++++V RW++ELR HADS+I I L+GNK
Sbjct: 66  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNK 125
Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           SDL  +RAV  ++A  FAE  GL F E SAL+  NV+ AF  +L EIY
Sbjct: 126 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  221 bits (563), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/165 (64%), Positives = 133/165 (80%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++GK IKAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           G ERYRA+TSAYYRGA+GA++VYDI K  ++++V RW++ELR HADS+I I L+GNKSDL
Sbjct: 63  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 122
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
             +RAV  ++A  FAE  GL F E SAL+  NV+ AF  +L EIY
Sbjct: 123 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  212 bits (540), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/175 (57%), Positives = 133/175 (76%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+V+IGDS VGKS +LSRFT +EF  +SKSTIGVEF TRT+ +  K IKAQIWDTA
Sbjct: 8   DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTA 67
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           G ERYRA+TSAYYRGA+GA++VYDI+K  S+++   W+ ELR +AD ++ + LIGNKSDL
Sbjct: 68  GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL 127
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELEC 200
             +RAV  ++A  FA +  + F+E SALN DNVD AF  L+  I+  VSK +++ 
Sbjct: 128 AHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDL 182

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  211 bits (536), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 99/171 (57%), Positives = 134/171 (78%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           ++VFKVV+IG+S VGK+ +LSRFT+NEF  DS++TIGVEF TRTV +    +KAQIWDTA
Sbjct: 8   NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 67
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           G ERYRA+TSAYYRGA+GA++V+D+TK Q++  V RW++EL  HA+++I ++L+GNKSDL
Sbjct: 68  GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 127
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
              R V  E+A  FAE+ GL F E SAL+  NV+ AF  +L+EI+  VSK+
Sbjct: 128 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  210 bits (535), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/180 (55%), Positives = 138/180 (76%), Gaps = 3/180 (1%)
Query: 20  MIP---DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI 76
           ++P   +  ++VFKVV+IG+S VGK+ +LSRFT+NEF  DS++TIGVEF TRTV +    
Sbjct: 14  LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 73
Query: 77  IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRI 136
           +KAQIWDTAG ERYRA+TSAYYRGA+GA++V+D+TK Q++  V RW++EL  HA+++I +
Sbjct: 74  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133
Query: 137 ILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           +L+GNKSDL   R V  E+A  FAE+ GL F E SAL+  NV+ AF  +L+EI+  VSK+
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 121/169 (71%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
           P    Y+FK ++IGD  VGKS +L +FT+ +F  D   TIGVEF TR + ++G+ IK QI
Sbjct: 9   PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 68
Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDTAGQER+RAVT +YYRGA GA++VYDIT+R +++H++ W+ + R   + +  IILIGN
Sbjct: 69  WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128
Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           K+DL   R V+ E+A +FAE+ GL F EASA  G+NV+ AF    ++IY
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  183 bits (464), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 120/169 (71%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
           P    Y+FK ++IGD  VGKS +L +FT+ +F  D   TIGVEF TR + ++G+ IK QI
Sbjct: 24  PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 83
Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDTAGQ R+RAVT +YYRGA GA++VYDIT+R +++H++ W+ + R   + +  IILIGN
Sbjct: 84  WDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 143
Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           K+DL   R V+ E+A +FAE+ GL F EASA  G+NV+ AF    ++IY
Sbjct: 144 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  177 bits (448), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 114/164 (69%)
Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
           Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+GK IK QIWDTAG
Sbjct: 9   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
           QE +R++T +YYRGA GA++VYDIT+R +F+H+  W+E+ R H++S++ I+LIGNKSDL 
Sbjct: 69  QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
             R V  E+   FA + GL F E SA    NV+ AF    +EIY
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/176 (48%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
           ++P +  Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R V I+GK IK 
Sbjct: 14  LVP-RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKL 72
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI 139
           QIWDTAGQE +R++T +YYRGA GA++VYDIT+R++F+H+  W+E+ R H+ S++ I+LI
Sbjct: 73  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLI 132
Query: 140 GNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSK 195
           GNKSDL   R V  E+   FA + GL F E SA    NV+ AF    +EIY  + +
Sbjct: 133 GNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 118/174 (67%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D++FK +VIG +  GKS +L +F +N+F  DS  TIGVEF +R V + GK +K QIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R+VT +YYRGA GA++VYDIT R++++ +A W+ + R  A  +I +IL GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 199
              R V+  +A  FA++  L F E SAL G+NV+ AF +  + I   +   EL+
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 125/173 (72%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IG+S VGKS +L RF+ + +  D  STIGV+F+ +TV ++GK +K QIWDTA
Sbjct: 6   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRG+ G ++VYD+T ++SF+ V  W++E+  +A S++  +L+GNK DL
Sbjct: 66  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198
            D R V  + A EFA+   + F E SAL+  NV+ AF  + ++I  ++S++ L
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 120/172 (69%)
Query: 25  IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDT 84
           +DY+FK+++IGDS VGK+ +L RF+++ F     STIG++F+ RT+ ++GK IK QIWDT
Sbjct: 3   MDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62
Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD 144
           AGQER+R +T+AYYRGA+G ++VYDIT  +SFD++  W+  +  HA + +  +++GNK D
Sbjct: 63  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122
Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           + D R VS E   + A D G+ F E SA    NV+ AFF L ++I   + KK
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 125/173 (72%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IG+S VGKS +L RF+ + +  D  STIGV+F+ +TV ++GK +K QIWDTA
Sbjct: 6   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRG+ G ++VYD+T ++SF+ V  W++E+  +A S++  +L+GNK DL
Sbjct: 66  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198
            D R V  + A EFA+   + F E SAL+  NV+ AF  + ++I  ++S++ L
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 119/170 (70%), Gaps = 1/170 (0%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
           M P+  DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+++  K +K 
Sbjct: 2   MNPE-YDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKL 60
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI 139
           QIWDTAGQER+R +TS+YYRGA G ++VYD+T R SFD+V +W++E+  +A  ++  +L+
Sbjct: 61  QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLV 120
Query: 140 GNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           GNK DLV  R V++++  E A+  G+ F E SA N  NV+ AF  +  EI
Sbjct: 121 GNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/170 (47%), Positives = 118/170 (69%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IGDS VGK+ +L RF+++ F     STIG++F+ RT+ ++GK IK QIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA+G ++VYDIT  +SFD++  W+  +  HA + +  +++GNK D+
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSK 195
            D R VS E   + A D G+ F E SA    NV+ AFF L ++I   + K
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Query: 19  NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIK 78
           +M P+  DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK
Sbjct: 8   SMNPE-YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66
Query: 79  AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIIL 138
            QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+  +A  ++  +L
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +GNK DL   + V    A EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 127 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 115/164 (70%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 7   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++S+ +V +W++E+  +A  ++  +L+GNKSDL
Sbjct: 67  GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              + V    A EFA+  G+ F E SA N  NV+ AF  +  EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 115/164 (70%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 7   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++S+ +V +W++E+  +A  ++  +L+GNKSDL
Sbjct: 67  GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              + V    A EFA+  G+ F E SA N  NV+ AF  +  EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  167 bits (423), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 115/164 (70%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 23  DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 82
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+  +A  ++  +L+GNK DL
Sbjct: 83  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 142
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              + V    A EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 143 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  167 bits (423), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 115/164 (70%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+  +A  ++  +L+GNK DL
Sbjct: 64  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              + V    A EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  167 bits (422), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 79/173 (45%), Positives = 124/173 (71%), Gaps = 2/173 (1%)
Query: 19  NMIP--DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI 76
           +++P   + DY+FK+++IG+S VGKS +L RF+ + +  D  STIGV+F+ +TV ++GK 
Sbjct: 10  SLVPRGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKT 69
Query: 77  IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRI 136
           +K QIWDTAGQER+R +TS+YYRG+ G ++VYD+T ++SF+ V  W++E+  +A S++  
Sbjct: 70  VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 129
Query: 137 ILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +L+GNK DL D R V  + A EFA+   + F E SAL+  NV+ AF  + ++I
Sbjct: 130 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  167 bits (422), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Query: 19  NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIK 78
           +M P+  DY+FK+++IGDS VGK+ +L RF  + +     STIGV+F+ RT+ ++GK IK
Sbjct: 8   SMNPE-YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66
Query: 79  AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIIL 138
            QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+  +A  ++  +L
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +GNK DL   + V    A EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 127 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  166 bits (421), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 126/180 (70%), Gaps = 2/180 (1%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV INGK +K Q+WDTA
Sbjct: 18  DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 77
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA+G ++VYD+T  ++F ++ +W + +  HA+   +++L+GNKSD+
Sbjct: 78  GQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAV-SKKELECGNGK 204
            + R V+A+     A++ G+ F E+SA N DNV+  FF L + I   + S K +  GNGK
Sbjct: 138 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGK 196

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/179 (44%), Positives = 120/179 (67%)
Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ 80
           + +  D++FK +VIG++  GKS +L +F + +F  DS  TIGVEF ++ + + GK +K Q
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIG 140
           IWDTAGQER+R+VT +YYRGA GA++VYDIT R++++ +  W+ + R  A  +I IIL G
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Query: 141 NKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 199
           NK DL   R V+  +A  FA++  L F E SAL G+NV+ AF +  ++I   +   EL+
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 114/164 (69%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 31  DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 90
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+  +A  ++  +L+GNK DL
Sbjct: 91  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              + V    A EFA+  G+ F E SA N  NV+ +F     EI
Sbjct: 151 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  164 bits (414), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 114/164 (69%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+  +A  ++  +L+G K DL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDL 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              + V    A EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 126 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  163 bits (413), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 114/164 (69%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D +FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIWDTA
Sbjct: 4   DALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+  +A  ++  +L+GNK DL
Sbjct: 64  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              + V    A EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 120/166 (72%), Gaps = 4/166 (2%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV INGK +K QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA+G ++VYDIT  ++F ++ +W + +  HA+   +++L+GNKSD+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
            + R V+A+     A++ G+ F E+SA N DNV+  FF   +L+QE
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  160 bits (406), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 116/170 (68%), Gaps = 2/170 (1%)
Query: 22  PD-KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ 80
           PD + D++FK+V++GD++VGK+ ++ RF    F     STIGV+F  +T+ I GK +K Q
Sbjct: 22  PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81
Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIG 140
           IWDTAGQER+R +T +YYR A GA++ YDITKR SF  V  W+E++R +A S+I  +LIG
Sbjct: 82  IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141
Query: 141 NKSDLVDMRAVSAEDAVEFAEDQGLFFS-EASALNGDNVDTAFFRLLQEI 189
           NKSDL ++R VS  +A   AE   +  + E SA +  NV+ AF R+  E+
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  160 bits (404), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 119/164 (72%), Gaps = 4/164 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV INGK +K Q+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147
           ER+R +T+AYYRGA+G ++VYD+T  ++F ++ +W + +  HA+   +++L+GNKSD+ +
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
            R V+A+     A++ G+ F E+SA N DNV+  FF   +L+QE
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 111/160 (69%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149
           +R +TS+YYRGA G +VVYD+T ++SF++V +W++E+  +A  ++  +L+GNK DL   +
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 150 AVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            V    A EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 118/166 (71%), Gaps = 4/166 (2%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV INGK +K QIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA G ++VYDIT  ++F ++ +W + +  HA+   +++L+GNKSD 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
            + R V+A+     A++ G+ F E+SA N DNV+  FF   +L+QE
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 114/164 (69%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D++FK +VIG++  GKS +L +F + +F  DS  TIGVEF ++ + + GK +K QIWDTA
Sbjct: 9   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 68
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R+VT +YYRGA GA++VYDIT R++++ +  W+ + R  A  +I IIL GNK DL
Sbjct: 69  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 128
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              R V+  +A  FA++  L F E SAL G++V+ AF +  ++I
Sbjct: 129 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  157 bits (398), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 118/166 (71%), Gaps = 4/166 (2%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV INGK +K Q+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA G ++VYD+T  ++F ++ +W + +  HA+   +++L+GNKSD 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
            + R V+A+     A++ G+ F E+SA N DNV+  FF   +L+QE
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D++FK+++IGDS VGKS +L RF  N F     +TIGV+F+ RTV ING+ +K QIWDTA
Sbjct: 7   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS YYRG  G +VVYD+T  +SF +V RW+ E+  + D   R IL+GNK+D 
Sbjct: 67  GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCR-ILVGNKNDD 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
            + + V  EDA +FA   G+   E SA    NV+  F
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 113/164 (68%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D++FK +VIG++  GKS +L +F + +F  DS  TIGVEF ++ + + GK +K QIWDTA
Sbjct: 6   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 65
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           G ER+R+VT +YYRGA GA++VYDIT R++++ +  W+ + R  A  +I IIL GNK DL
Sbjct: 66  GLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              R V+  +A  FA++  L F E SAL G++V+ AF +  ++I
Sbjct: 126 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 113/170 (66%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
           ++P   DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +TV  + K IK 
Sbjct: 14  LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI 139
           QIWDTAGQERYR +T+AYYRGA+G +++YDI  ++SF  V  W  +++ ++  + ++IL+
Sbjct: 74  QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 140 GNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           GNK DL D R V AED    A+D G  F EASA    NV   F RL+  I
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 108/160 (67%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD   GKS ++ RF K++F    +STIG  F ++T+ +N   +K +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149
           Y ++   YYRGA  A++V+D+T + SF+   +WV+EL+A  + ++ + L GNKSDL+D R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 150 AVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            V+AEDA  +A++ GLFF E SA    NV   F+ + + +
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 108/160 (67%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D++FK+V+IG++ VGK+ ++ RFT+  F     +TIGV+F  +TV ING+ +K QIWDTA
Sbjct: 24  DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R++T +YYR A   ++ YDIT  +SF  +  W+ E+  +A + +  +L+GNK DL
Sbjct: 84  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
            + R VS + A EF+E Q +++ E SA   DNV+  F  L
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 108/168 (64%), Gaps = 8/168 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF     WV+EL+  A  +I I L GNK+DL + 
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           RAV  ++A  +A+D  L F E SA    NV+        EI+ A++KK
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVN--------EIFXAIAKK 167

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 112/165 (67%)
Query: 25  IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDT 84
            DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +T+  N K IK QIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD 144
           AGQERYR +T+AYYRGA+G +++YDIT  +SF+ V  W  +++ ++  + +++L+GNK D
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           + D R VS+E   + A+  G  F EASA +  NV   F RL+  I
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 112/169 (66%), Gaps = 1/169 (0%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
           P   D+  +V++IG   VGK+ ++ RFT + F    KST+GV+F+ +TV + GK I+ QI
Sbjct: 20  PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79
Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDTAGQER+ ++TSAYYR A G ++VYDITK+++FD + +W++ +  +A     ++L+GN
Sbjct: 80  WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139
Query: 142 KSDLVDMRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
           K D    R ++ +   +FA+   G+ F EASA +  NVD  F +L+ +I
Sbjct: 140 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 108/168 (64%), Gaps = 8/168 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF     WV+EL+  A  +I I L GNK+DL + 
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           RAV  ++A  +A+D  L F E SA    NV+        EI+ A++KK
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 167

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 108/168 (64%), Gaps = 8/168 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF     WV+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           RAV  ++A  +A+D  L F E SA    NV+        EI+ A++KK
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 166

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 105/161 (65%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T++V ++   +K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT +++F     WV+EL+  A  SI I L GNK+DL + 
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R V  E+A  +A+D  L F E SA    NV+  F  + +++
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+S VGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF     WV+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           RAV  ++A  +A+D  L F E SA    NV+        EI+ A++KK
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 166

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+S VGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF     WV+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           RAV  ++A  +A+D  L F E SA    NV+        EI+ A++KK
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 166

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+S VGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF     WV+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           RAV  ++A  +A+D  L F E SA    NV+        EI+ A++KK
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 166

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+S VGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF     WV+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           RAV  ++A  +A+D  L F E SA    NV+        EI+ A++KK
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 166

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+S VGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF     WV+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           RAV  ++A  +A+D  L F E SA    NV+        EI+ A++KK
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 166

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 106/168 (63%), Gaps = 8/168 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT   +F     WV+EL+  A  +I I L GNK+DL   
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           RAV  ++A  +A+D  L F E SA    NV+        EI+ A++KK
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVN--------EIFMAIAKK 163

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF     WV+EL+  A  +I I L GNK+DL + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           RAV  ++A  +A+D  L F E SA    NV+        EI+ A++KK
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVN--------EIFMAIAKK 165

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  146 bits (369), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Query: 17  QENM-IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK 75
           +EN+      DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +TV  + K
Sbjct: 11  RENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 70
Query: 76  IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR 135
            +K QIWDTAGQERYR +T+AYYRGA+G +++YDIT  +SF+ V  W  +++ ++  + +
Sbjct: 71  RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ 130
Query: 136 IILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +IL+GNK D+ + R V  E     AE  G  F EASA    +V  AF RL+  I
Sbjct: 131 VILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 105/168 (62%), Gaps = 8/168 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT   +F     WV+EL+  A  +I I L GNK+DL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           RAV  ++A  +A+D  L F E SA    NV+        EI+ A++KK
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVN--------EIFMAIAKK 165

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 107/165 (64%)
Query: 25  IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDT 84
            DY FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +T+  N K IK QIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD 144
           AG ERYR +T+AYYRGA G ++ YDIT  +SF+ V  W  +++ ++  + +++L+GNK D
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             D R VS+E   + A+  G  F EASA +  NV   F RL+  I
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 105/168 (62%), Gaps = 8/168 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STI   F T+TV ++   +K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT   +F     WV+EL+  A  +I I L GNK+DL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           RAV  ++A  +A+D  L F E SA    NV+        EI+ A++KK
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVN--------EIFMAIAKK 165

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            KV ++GD+ VGKS I+ RF ++ F  +   TIG  F T+TV    ++ K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+ ++   YYRG+  AV+VYDITK+ SF  + +WV+EL+ H   +I + + GNK DL D+
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R V  +DA E+AE  G    E SA N  N++  F  + ++I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  143 bits (361), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 98/161 (60%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            KV ++GD+ VGKS I+ RF ++ F  +   TIG  F T+TV    ++ K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+RA+   YYRG+  A++VYDITK ++F  +  WV ELR H   SI + + GNK DL D+
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R V   DA ++A+     F E SA N  N++  F  + + I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 108/168 (64%), Gaps = 1/168 (0%)
Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQI 81
           D  D  FKV+++GDS VGK+ +L RF    F   +  ST+G++F+ + + ++G  +K Q+
Sbjct: 5   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 64
Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDTAGQER+R+VT AYYR A   +++YD+T + SFD++  W+ E+  +A   + ++L+GN
Sbjct: 65  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124
Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           K D    R V  ED  + A++ GL F E SA  G NVD AF  + +E+
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 104/163 (63%), Gaps = 3/163 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++G++AVGKS I+ RF  N+F  + + TIG  F T+ VTIN   +K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD-- 147
           + ++   YYR A  A+VVYD+TK QSF     WV+EL   A   I I L+GNK D +   
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 148 -MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             R V+ E+  + AE++GL F E SA  G+NV+  F  + ++I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 97/161 (60%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            KV ++GD+ VGKS I+ RF ++ F  +   TIG  F T+TV    ++ K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+RA+   YYRG+  A++VYDITK ++F  +  WV ELR H   SI + + GNK DL D+
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R V   DA ++A+     F E SA N  N++  F  + + I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 112/175 (64%), Gaps = 11/175 (6%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--------GKII 77
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  N        GK  
Sbjct: 23  DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 78  KA--QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSI 134
           K   Q+WDTAGQER+R++T+A++R A+G ++++D+T +QSF +V  W+ +L+A+A   + 
Sbjct: 83  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            I+LIGNK+DL D R V+   A E A+  G+ + E SA  G NV+ A   LL  I
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  134 bits (336), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 109/175 (62%), Gaps = 11/175 (6%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN----------GK 75
           DY+ K + +GDS VGK+ +L ++T  +F     +T+G++F+ + V             G+
Sbjct: 9   DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 76  IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SI 134
            I  Q+WDTAG ER+R++T+A++R A+G ++++D+T  QSF +V  W+ +L+ HA S + 
Sbjct: 69  RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            I+L GNKSDL D RAV  E+A E AE  G+ + E SA NG N+  A   LL  I
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  133 bits (335), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
             K+++IG+S VGKS +L RFT + F  +  +TIGV+F+ +T++++G   K  IWDTAGQ
Sbjct: 15  TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLV 146
           ER+R +T +YYRGA G ++VYD+T+R +F  +  W+ EL  +   + I   L+GNK D  
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           + R V   + ++FA      F EASA   D V  AF  L+++I
Sbjct: 134 ENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  133 bits (335), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 103/154 (66%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+V +G+ AVGK+ I++RF  + F  + +STIG++F ++T+ ++   ++ Q+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  A+VVYDIT RQSF++  +W++++       + I L+GNK+DL D+
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
           R V+ E+  + A++    F E SA  G N+   F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  133 bits (334), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 104/163 (63%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + I+ Q+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF    +W++++R    S + I+L+GNK+DL D 
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R VS E+    A++  + F E SA  G NV   F R+   + G
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 169

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 104/167 (62%), Gaps = 6/167 (3%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+V+ GD+AVGKS  L R  KNEF  +  +T+GV+FQ +T+ ++G+    Q+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y+R A G +++YD+T  +SF ++  WV+ +   A  ++ I+L+GNK+D+ D 
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 149 RAVSAEDAV------EFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            A   +  V      + A   G  F E SA +G N+  A   L +E+
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 105/163 (64%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF   ++W++++R    S + I+L+GNK+DL D 
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R VS E+    A++  + F E SA  G NV   F R+   + G
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 106/169 (62%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + I+ Q+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF    +W++++R    S + I+L+GNK+DL D 
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKE 197
           R VS E+    A++  + F E SA  G NV   F R+   + G  S ++
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 182

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 88/115 (76%)
Query: 31  VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY 90
           +++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIWDTAGQER+
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 91  RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           R +TS+YYRGA G +VVYD+T ++SF++V +W++E+  +A  ++  +L+GNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 104/157 (66%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF   ++W++++R    S + I+L+GNK+DL D 
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
           R ++ E+  + A++  + F E SA  G NV   F R+
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 113/181 (62%), Gaps = 11/181 (6%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--------GKII 77
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  +        GK  
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 78  KA--QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SI 134
           K   Q+WDTAG ER+R++T+A++R A+G ++++D+T +QSF +V  W+ +L+A+A   + 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS 194
            I+LIGNK+DL D R V+   A E AE  G+ + E SA  G NV+ +   LL  I   + 
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 195 K 195
           K
Sbjct: 189 K 189

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 102/157 (64%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF    +W++++R    S + I+L+GNK+DL D 
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
           R VS E+    A++  + F E SA  G NV   F R+
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 106/169 (62%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF    +W++++R    S + I+L+GNK+DL D 
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKE 197
           R VS E+    A++  + F E SA  G NV   F R+   + G  S ++
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 185

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  130 bits (326), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 113/181 (62%), Gaps = 11/181 (6%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--------GKII 77
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  +        GK  
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 78  KA--QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSI 134
           K   Q+WDTAG ER+R++T+A++R A+G ++++D+T +QSF +V  W+ +L+A+A   + 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS 194
            I+LIGNK+DL D R V+   A E AE  G+ + E SA  G NV+ +   LL  I   + 
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 195 K 195
           K
Sbjct: 189 K 189

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 106/169 (62%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF    +W++++R    S + I+L+GNK+DL D 
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKE 197
           R VS E+    A++  + F E SA  G NV   F R+   + G  S ++
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 175

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 95/163 (58%)
Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
           Y FKVV++G+  VGK+ ++ R+ +N+F     +T+G  F T+ + I GK +   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
           QER+ A+   YYR + GA++VYDIT   SF  V  WV+ELR    + I + ++GNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             R VS ++A  +AE  G      SA     ++  F  L + +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 11/175 (6%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--------GKII 77
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  +        GK  
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 78  KA--QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSI 134
           K   Q+WDTAG ER+R++T+A++R A G ++ +D+T +QSF +V  W  +L+A+A   + 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            I+LIGNK+DL D R V+   A E AE  G+ + E SA  G NV+ +   LL  I
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 11/175 (6%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN--------GKII 77
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  +        GK  
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 78  KA--QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSI 134
           K   Q+WDTAG ER+R++T+A++R A G ++ +D+T +QSF +V  W  +L+A+A   + 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            I+LIGNK+DL D R V+   A E AE  G+ + E SA  G NV+ +   LL  I
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 94/163 (57%)
Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
           Y FKVV++G+  VGK+ ++ R+ +N+F     +T+   F T+ + I GK +   IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
           QER+ A+   YYR + GA++VYDIT   SF  V  WV+ELR    + I + ++GNK DL 
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             R VS ++A  +AE  G      SA     ++  F  L + +
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 94/163 (57%)
Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
           Y FKVV++G+  VGK+ ++ R+ +N+F     +T+   F T+ + I GK +   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
           QER+ A+   YYR + GA++VYDIT   SF  V  WV+ELR    + I + ++GNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             R VS ++A  +AE  G      SA     ++  F  L + +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 99/167 (59%), Gaps = 5/167 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           +FK++VIGDS VGK+ +  RF    F   +++TIGV+F+ R V I+G+ IK Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 88  ERYR-AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDL 145
           ER+R ++   YYR     V VYD+T   SF  +  W+EE + H  ++ I  IL+GNK DL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALN---GDNVDTAFFRLLQEI 189
                V  + A +FA+   +   E SA N    D+V+  F  L  ++
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 99/174 (56%), Gaps = 5/174 (2%)
Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ 80
           +P     +FK++VIGDS VGK+ +  RF    F   +++TIGV+F+ R V I+G+ IK Q
Sbjct: 22  LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 81  IWDTAGQERYR-AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIIL 138
           +WDTAGQER+R ++   YYR     V VYD T   SF  +  W+EE + H  ++ I  IL
Sbjct: 82  LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRIL 141
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN---GDNVDTAFFRLLQEI 189
           +GNK DL     V  + A +FA+       E SA N    D+V+  F  L  ++
Sbjct: 142 VGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  120 bits (300), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 11/164 (6%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-KIIKAQIWDTAG 86
           + KV+++GDS VGK+ ++ R+  +++    K+TIG +F T+ VT++G K+   Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNK 142
           QER++++  A+YRGA   V+VYD+T   SF+++  W +E   HA+     +   +++GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 143 SDLVDMRA-VSAEDAVEFAEDQG---LFFSEASALNGDNVDTAF 182
            D  + +  VS + A E A+  G   LF +  SA N  NVDTAF
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLT--SAKNAINVDTAF 169

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  116 bits (291), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 100/160 (62%), Gaps = 6/160 (3%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           +FK++++GD  VGKS +++R+  N+F      TIGVEF  + + ++G  +  QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKS 143
           ER+R++ + +YRG+   ++ + +   QSF +++ W +E   +AD     S   +++GNK+
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 144 DLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
           D+ + R VS E+A  + +D G + + E SA +  NV  AF
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           +FKV+++GD  VGKS +++R+  N+F      TIGVEF  + + ++G  +  QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKS 143
           ER+R++ + +YRG+   ++ + +   QSF +++ W +E   +AD     S   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 144 DLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
           D+ + R VS E+A  +  D G + + E SA +  NV  AF
Sbjct: 127 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           +FKV+++GD  VGKS +++R+  N+F      TIGVEF  + + ++G  +  QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKS 143
           ER+R++ + +YRG+   ++ + +   QSF +++ W +E   +AD     S   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 144 DLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
           D+ + R VS E+A  +  D G + + E SA +  NV  AF
Sbjct: 129 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + KV+++GD  VGKS +++R+  N+F   +  TIGVEF  R + ++G+ +  QIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKS 143
           ER++++ + +YRGA   ++ + +  RQSF+++  W +E   +AD         +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 144 DLVDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
           D  D R V+ E+A  +  + G + + E SA +  NV  AF
Sbjct: 127 DKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+VV+G+ AVGKS ++ R+ K  F  D K TIGV+F  R + +N + ++  +WDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149
           + A+T AYYRGA   V+V+  T R+SF+ ++ W E++ A     I   L+ NK DL+D  
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDS 125
Query: 150 AVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
            +  E+A   A+   L F   S     NV   F
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 98/202 (48%), Gaps = 40/202 (19%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI---------------- 72
           +K V++G+S+VGKS I+ R TK+ F  ++ +TIG  F T  V +                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 73  ---------------------NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT 111
                                N   IK  IWDTAGQERY ++   YYRGA  A+VV+DI+
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 112 KRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEAS 171
              + D    WV +L+    S+  IIL+ NK D    + V   +  ++A+D  L F + S
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTS 184
Query: 172 ALNGDNVDTAFFRLLQEIYGAV 193
           A  G N+   F+ L +EIY  +
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNI 206

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++G+ ++  I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLV 146
           E Y A+   Y+R   G + V+ IT+ +SF   A + E+ LR   D ++  +L+GNKSDL 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           D R VS E+A   AE   + + E SA    NVD  FF L++EI
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++G+ ++  I DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 78
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDM 148
           Y A+   Y+R   G + V+ IT+ +SF   A + E+ LR   D ++  +L+GNKSDL D 
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R VS E+A   AE   + + E SA    NVD  FF L++EI
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++G+ ++  I DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDM 148
           Y A+   Y+R   G + V+ IT+ +SF   A + E+ LR   D ++  +L+GNKSDL D 
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R VS E+A   AE   + + E SA    NVD  FF L++EI
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + KV+++GDS VGK+ +++++   +F    K+TIG +F T+ V ++ +++  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS----SIRIILIGNKS 143
           ER++++  A+YRGA   V+V+D+T   +F  +  W +E    A      +   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
           DL + +  +            + + E SA    NV+ AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 91/159 (57%), Gaps = 4/159 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + KV+++GDS VGK+ +++++   +F    K+TIG +F T+ V ++ +++  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS----SIRIILIGNKS 143
           ER++++  A+YRGA   V+V+D+T   +F  +  W +E    A      +   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
           DL + +  +            + + E SA    NV+ AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 4/167 (2%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI-IKAQIWDTAGQ 87
            K+VV+GD A GK+ + + F +  F    K TIG++F  R +T+ G + +  QIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARW---VEELRAHADSSIRIILIGNKSD 144
                +   Y  GA G ++VYDIT  QSF+++  W   V+++   +++   + L+GNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           L  MR +  E  + F ++ G      SA  GD+V   F ++  EI G
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++G+ ++  I DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDM 148
           Y A+   Y+R   G + V+ IT+ +SF   A + E+ LR   D ++  +L+GNKSDL D 
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R VS E+A   A+   + + E SA    NVD  FF L++EI
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + KV+++GDS VGK+ +++++   +F    K+TIG +F T+ V ++ +++  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS----SIRIILIGNKS 143
           ER++++  A+YRGA   V+V+D+T   +F  +  W +E    A      +   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
           D  + +  +            + + E SA    NV+ AF
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++G+ ++  I DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDM 148
           Y A+   Y+R   G + V+ IT+ +SF   A + E+ LR   D ++  +L+GNKSDL D 
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R VS E+A   AE   + + E SA    NVD  FF L++EI
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 90/159 (56%), Gaps = 4/159 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + KV+++GDS VGK+ +++++   +F    K+TIG +F T+ V ++ +++  QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS----SIRIILIGNKS 143
           ER++++  A+YRGA   V+V+D+T   +F  +  W +E    A      +   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
           DL + +  +            + + E SA    NV+ AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++G+ ++  I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADS-SIRIILIGNKSDL 145
           E Y A+   Y+R   G ++V+ IT+ +SF   A + E+ LR  A+   I ++++GNKSDL
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            + R V  E+A   AE+ G+ + E SA    NVD  FF L++EI
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++G+ ++  I DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADS-SIRIILIGNKSDLVD 147
           Y A+   Y+R   G ++V+ IT+ +SF   A + E+ LR  A+   I ++++GNKSDL +
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  E+A   AE+ G+ + E SA    NVD  FF L++EI
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           +Y  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 133
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 134 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ +  + E+++   DS  + ++L+GNKSDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  + A + A   G+ F E SA     VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF      T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
           +K+ +IGD  VGK+  ++R     F  +  +T+G V      +   G +IK  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147
           E+   +   YY GA GA++ +D+T R +  ++ARWV+E +A   +   I++  NK D+ +
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
            + +S +  +E  + +   + E SA    N    F  L
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 121
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 122 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF      T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++ +D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ +  + E+++   DS  + ++L+GNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  + A + A   G+ F E SA     VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 128
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 129 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 124
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 125 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 166

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 130
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 131 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 172

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    E      +T+GVE        N   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D+ D 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD- 133
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  V F   + L + + SA +  N +  F  L +++ G
Sbjct: 134 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +TIGVE    +   N   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D V  
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 130
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGP 208
           R V A+  + F   + L + + SA +  N +  F  L +++ G     +LE        P
Sbjct: 131 RKVKAK-TITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG---NPQLEFVASPALAP 186
Query: 209 P 209
           P
Sbjct: 187 P 187

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +TIGVE    +   N   IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D V  
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 123
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  + F   + L + + SA +  N +  F  L +++ G
Sbjct: 124 RKVKAK-TITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG 165

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +TIGVE    +   N   IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L      +I I+L GNK D V  
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 122
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R V A+  + F   + L + + SA +  N +  F  L +++ G
Sbjct: 123 RKVKAK-TITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG 164

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K V +GD AVGK+ +L  +T N F  D   T+   F +  V ++G  +   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM 148
           Y  +    YRGA   ++ + +  + S+++VA +W+ ELR H    + IIL+G K DL D 
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDD 125
Query: 149 RA--VSAEDAVEFAEDQG 164
           +   +    AV    +QG
Sbjct: 126 KQFFIDHPGAVPITTNQG 143

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 9/170 (5%)
Query: 30  KVVVIGDSAVGKSQILSRFTK--NEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW--DTA 85
           KV V+G++ VGKS ++S FT   ++F  D   T GVE     VTI    +  +++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL---RAHADSSIRIILIGNK 142
           G + Y+   S Y+ G   A++V+D++  +SF+    W E L   R   +  +R +L+ NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 143 SDLVDMR-AVSAEDAVEFAEDQGL-FFSEASALNGDNVDTAFFRLLQEIY 190
           +DL   R  V  + A ++A    L FF  ++   G + D  F  +    Y
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFY 191

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 12/181 (6%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K V +GD AVGK+ +L  +T N+F  D   T+   F    V ++G+I+   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQE 68
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    YRGA   V+ + +  + S+++V  +W+ ELR  A  ++ I+L+G K DL D
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRD 127
Query: 148 MRAVSAEDAVEFAEDQG---------LFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198
            +   A+        QG           + E S+    NV   F   ++ +     +KE+
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEV 187
Query: 199 E 199
Sbjct: 188 P 188

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K V +GD AVGK+ +L  +T N F  D   T+   F +  V +NG  +   +WDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQED 68
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    YRGA   ++ + +  + S+++V+ +W+ EL+ H    + I+L+G K DL D
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLRD 126

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KVV++G   VGK+ +  +F + EF      T+   + ++ VT+        + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIILIGNKSDLVDM 148
           Y  +  ++  G  G V+VY +T   SF  +    ++L   H  + + ++L+GNK+DL   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R V A +  + AE  G  F E+SA         F +++QEI
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+ + G + VGKS ++ RF    F ++   T+   ++ +  TI+ +++  +I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQED 88
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARW---VEELRAHADSSIRIILIGNKSDLV 146
                  + R   G V+VYDIT R SF+ V      ++E++     ++ +IL+GNK+DL 
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLD 145
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
             R VS E+  + A +    F E SA  G+ N+   F+ L +E+
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ +  + E+++   DS  + ++L+GNKSDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  + A + A   G+ F E SA     VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ +  + E+++   DS  + ++L+GNKSDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  + A + A   G+ F E SA     VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNKSDL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 18/188 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++GK +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y     +++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIY--GA 192
                       +  ++    +  A++ G + + E SAL    + T F   ++ +     
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 193 VSKKELEC 200
           V K++ +C
Sbjct: 182 VKKRKRKC 189

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+I    I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 16/173 (9%)
Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
           K+    K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++GK +   +WD
Sbjct: 3   KLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWD 61
Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNK 142
           TAGQE Y  +    Y     +++ + +    SF++V A+W  E+R H  ++  IIL+G K
Sbjct: 62  TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTK 120
Query: 143 SDLVD------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
            DL D            +  ++    +  A++ G + + E SAL    + T F
Sbjct: 121 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++GK +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y     +++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 123
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                       +  ++    +  A++ G + + E SAL    + T F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++GK +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y     +++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                       +  ++    +  A++ G + + E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ +  + E+++   DS  + ++L+GNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  + A + A   G+ F E SA     VD AF+ L++EI
Sbjct: 141 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI   ++ + V ++ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT + +F+ +    E+ LR      + +IL+GNK DL D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 148 MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  E     A       F E+SA +  NV+  F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K V +GD AVGK+ +L  +T N F  D   T+   F    V ++G  +   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    YRGA   ++ + +  + S++++  +W+ EL+ H    I I+L+G K DL D
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRD 124

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F  +   TI   ++ + V ++ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT + +F+ +    E+ LR      + +IL+GNK DL D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 148 MRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  E     A       F E+SA +  NV+  F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 41  KSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG 100
           KS +  +F ++ F  D   TI   + T+  +++G   +  I DTAGQE + A+   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 101 ALGAVVVYDITKRQSFDHVAR-WVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEF 159
             G ++V+ I  RQSF+ V + + + LR        ++L+GNK+DL   R V   +A  F
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
                + + EASA    NVD AF +L++ +
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++GK +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIY--GA 192
                       +  ++    +  A++ G + + E SAL    + T F   ++ +     
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 193 VSKKELEC 200
           V K++ +C
Sbjct: 182 VKKRKRKC 189

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 69
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 128
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 129 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI   ++ + V ++ +    +I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT + +F+ +    E+ LR      + +IL+GNK DL D
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 148 MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  E     A       F E+SA +  NV+  F+ L+++I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF  +  + E+++   DS  + ++L+GNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
            R V  + A E A+  G+ F E SA     V+ AF+ L++EI     KK
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI   ++ + V ++ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT + +F+ +    E+ LR      + +IL+GNK DL D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 148 MRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  E     A       F E+SA +  NV+  F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++GK +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                       +  ++    +  A++ G + + E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F      TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F      TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   +I   ++ + V I+G+     I DTAGQE
Sbjct: 10  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 69  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 127
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 128 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++GK +   +WDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 149
Query: 148 -----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                      +  ++    +  A++ G + + E SAL    + T F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++GK +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                       +  ++    +  A++ G + + E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++GK +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                       +  ++    +  A++ G + + E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GN+ DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++GK +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                       +  ++    +  A++ G + + E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++GK +   +WDTAGQE 
Sbjct: 24  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQED 82
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D 
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 141
Query: 148 -----------MRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                      +  ++    +  A++ G   + E SAL    + T F
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGK+ +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++GK +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                       +  ++    +  A++ G + + E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   +I   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 41  KSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG 100
           KS +  +F ++ F  D   TI   + T+   I+ +  +  I DTAGQE + A+   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 101 ALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEF 159
             G ++V+ +T R SF+ + ++  + LR        +ILIGNK+DL   R V+ E+  + 
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           A    + + EASA    NVD AF  L++ I
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++GK +   +WDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQED 73
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D 
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 132
Query: 148 -----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                      +  ++    +  A++ G + + E SAL    + T F
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++GK +   +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 128
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                       +  ++    +  A++ G + + E SAL    + T F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
            R V +  A + A   G+ + E SA     V+ AF+ L++E
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++GK +   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIY--GA 192
                       +  ++    +  A++ G + + E SAL    + T F   ++ +     
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 193 VSKKELEC 200
           V K++ +C
Sbjct: 182 VKKRKRKC 189

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 16/178 (8%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++GK +   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+W  E+R H   +  I+L+G K DL D
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRD 122
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIYGA 192
                       +  ++    +  A + G + + E SAL    + T F   ++ + G 
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLGG 180

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++GK +   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLV 146
           E Y  +    Y      ++ + +    SF HV A+W  E+R H  ++  IIL+G K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLR 272
Query: 147 D------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
           D            +  ++    +  A++ G + + E SAL    + T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++GK +   +WDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 64
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      ++ + +    SF++V A+W  E+R H   +  I+L+G K DL D 
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRDD 123
Query: 148 -----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIYG 191
                      +  ++    +  A + G + + E SAL    + T F   ++ + G
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++GK +   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIY--GA 192
                       +  ++    +  A++ G + + E SAL    + T F   ++ +     
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 193 VSKKELEC 200
           V K++ +C
Sbjct: 182 VKKRKRKC 189

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++GK +   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLV 146
           E Y  +    Y      ++ + +    SF HV A+W  E+R H  ++  IIL+G K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLR 272
Query: 147 D------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
           D            +  ++    +  A++ G + + E SAL    + T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++GK +   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLV 146
           E Y  +    Y      ++ + +    SF HV A+W  E+R H  ++  IIL+G K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLR 272
Query: 147 D------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
           D            +  ++    +  A++ G + + E SAL    + T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N    +   T+   + +  V ++GK +   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 89
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 148
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                       +  ++    +  A++ G + + E SAL    + T F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 8/177 (4%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+ ++G  +VGKS +  +F + +F      TI   F T+ +T+NG+    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWV--EELRAHADSSIRIILIGNKSDLVD 147
           Y      Y     G ++VY +T  +SF+ V + +  + L       I I+L+GNK DL  
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGK 204
            R +S E+    AE     F E+SA         F R++ E      K +  C  GK
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE----AEKMDGACSQGK 178

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++GK +   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      ++ + +    SF++V A+W  E+R H   +  I+L+G K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                      +  ++    +  A + G + + E SAL    + T F
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    S+++V A+W  E+R H  S+  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 121
Query: 148 ----MRAVSAEDAVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  +        QGL  +         E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 35/187 (18%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++GK +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 89  RYRAVTSAYYRGALGAVVVYDITKR-------------------QSFDHV-ARWVEELRA 128
            Y  +    Y   +G     DIT R                    SF++V A+W  E+R 
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 129 HADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQG-LFFSEASALNG 175
           H  ++  IIL+G K DL D            +  ++    +  A++ G + + E SAL  
Sbjct: 125 HCPNT-PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 176 DNVDTAF 182
             + T F
Sbjct: 184 RGLKTVF 190

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
              A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNK DL  
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++GK +   +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 65
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 124
Query: 148 ------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                       +  ++    +  A++ G + + E SAL    + T F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++GK +   +WDTAG E 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      ++ + +    SF++V A+W  E+R H  ++  IIL+G K DL D 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 149
Query: 148 -----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                      +  ++    +  A++ G + + E SAL    + T F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+ ++G  +VGKS +  +F + +F   +  TI   F T+ +T+NG+    Q+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWV--EELRAHADSSIRIILIGNKSDLVD 147
           Y      Y     G ++VY +T  +SF+ V + +  + L       I I+L+GNK DL  
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
            R +S E+    AE     F E+SA         F R++ E
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 68
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    S+++V A+W  E+R H  S+  IIL+G K DL D
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 127
Query: 148 ----MRAVSAEDAVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  +        QGL  +         E SAL    + T F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KVV++GD   GK+ +L  F    F      T+   +    + + GK +   IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +   +Y  A   ++ +D+T   SFD++  RW  E+  H    + II++G K+DL   
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRKD 153
Query: 148 -----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
                      +  V+     E A   G + + E SA   DNV   F
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+ ++G  +VGKS +  +F + +F      TI   F T+ +T+NG+    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWV--EELRAHADSSIRIILIGNKSDLVD 147
           Y      Y     G ++VY +T  +SF+ V + +  + L       I I+L+GNK DL  
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
            R +S E+    AE     F E+SA         F R++ E
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 69
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    S+++V A+W  E+R H  S+  IIL+G K DL D
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 128
Query: 148 ----MRAVSAEDAVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  +        QGL  +         E SAL    + T F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K V++GD AVGK+ ++  +T N +  +   T    F +  V+++G+ ++ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDE 80
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           +  +    Y      ++ + +    SF +V+ +WV E+R H   +  IIL+G +SDL   
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-PIILVGTQSDLRED 139
Query: 146 ---------VDMRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + V  E A   AE+ +   + E SAL   N+   F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+ ++G  +VGKS +  +F + +F      TI   F T+ +T+NG+    Q+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWV--EELRAHADSSIRIILIGNKSDLVD 147
           Y      Y     G ++VY +T  +SF+ V + +  + L       I I+L+GNK DL  
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
            R +S E+    AE     F E+SA         F R++ E
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+GD  VGKS +  +F +  F  D   TI   +   T  I+ +     + DTAGQE
Sbjct: 14  YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
            + A+   Y R   G ++VY +T + SF+HV R+ +  LR     S  +IL+ NK DL+ 
Sbjct: 73  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 132
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
           +R V+ +   E A    + + E SA +   NVD  F  L++ I
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+GD  VGKS +  +F +  F  D   TI   +   T  I+ +     + DTAGQE
Sbjct: 19  YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 77
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
            + A+   Y R   G ++VY +T + SF+HV R+ +  LR     S  +IL+ NK DL+ 
Sbjct: 78  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
           +R V+ +   E A    + + E SA +   NVD  F  L++ I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 3/171 (1%)
Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ 80
           +P +    +K+VV+GD  VGKS +  +F +  F  +   TI   ++  T  I+ +     
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILD 69
Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILI 139
           + DTAGQE + A+   Y R   G ++VY +T + SF+HV R+ +  LR     S  +IL+
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 140 GNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
            NK DL+ +R V+ +   E A    + + E SA +   NVD  F  L++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 123
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 132
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 3/171 (1%)
Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQ 80
           +P +    +K+VV+GD  VGKS +  +F +  F  +   TI   +   T  I+ +     
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILD 69
Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILI 139
           + DTAGQE + A+   Y R   G ++VY +T + SF+HV R+ +  LR     S  +IL+
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 140 GNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
            NK DL+ +R V+ +   E A    + + E SA +   NVD  F  L++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 12  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDL 141

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+VV+GD A GK+ +L  F+K+EF      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
           Y  +    Y      ++ + +    S +++  +WV E++ H   ++ IIL+ NK DL
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDL 141

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
           Y       Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 141

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 5/161 (3%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           ++V V G   VGKS ++ RF K  F      T+   ++ + ++ +  I   QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVE---ELRAHADSSIRIILIGNKSDL 145
           ++ A+           ++VY IT RQS + +    E   E++   + SI I+L+GNK D 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE-SIPIMLVGNKCDE 121
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186
              R V + +A   A      F E SA    NV   F  LL
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     + DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +    +   +   TV I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+   +   T+   +   TV I G+     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 16/169 (9%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + K VV+GD AVGK+ +L  +  + F  +   T+  +    +VT+ GK     ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLV 146
           E Y  +    Y      ++ + +    SF +V   WV EL+ +A  ++  +LIG + DL 
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 147 D------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAF 182
           D             + +  E   + A++ G   + E SAL    + T F
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I G+     ++DTAG E 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 67
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  +WV E+  H   +   +L+G + DL D 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 148 -----------MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
                       + ++ E A + A D + + + E SAL    +   F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K+VV+GD AVGK+ +L  F+K E       T+   F       N + I   +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQE 82
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
            Y  +    Y  +   ++ + +  R SFD+++ +W  E++ + D++ + +L+G K DL
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KTVLVGLKVDL 139

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K+VV+GD AVGK+ +L  F+K E       T+   F       N + I   +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQE 81
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
            Y  +    Y  +   ++ + +  R SFD+++ +W  E++ + D++ + +L+G K DL
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KTVLVGLKVDL 138

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+VV+GDS  GK+ +L  F K+ F  +   T+  E  T +  I+ + I+  +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDL 145
           Y  V    Y  +   ++ +DI++ ++ D V  +W  E++    ++ +++L+G KSDL
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDL 144

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+VV+GDS  GK+ +L  F K+ F  +   T+  E  T +  I+ + I+  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDL 145
           Y  V    Y  +   ++ +DI++ ++ D V  +W  E++    ++ +++L+G KSDL
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDL 123

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+VV+GDS  GK+ +L  F K+ F  +   T+  E  T +  I+ + I+  +WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDL 145
           Y  V    Y  +   ++ +DI++ ++ D V  +W  E++    ++ +++L+G KSDL
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDL 139

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++GK ++  +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL   
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 146 ---------VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+  + A   G F + E SA   D V   F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Query: 28  VFKVVVIGDSAVGKSQILSRFT-KNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
           +++VV++GD  VGK+ + S F  K E   D    +G +   RT+T++G+     + DT  
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQER--DLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 87  QERYRAVTS--AYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIILIGNKS 143
            E+     S  +  +G    V+VY I  R SF+  +    +LR  H    + IIL+GNK+
Sbjct: 62  AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
           DL   R VS E+    A      F E SA    NV   F
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGK---IIKAQIWDT 84
           ++VV+IG+  VGKS + + F       DS    +G +   RT+ ++G+   II   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 85  AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIIL 138
            G+  +       V  AY       ++VY IT R SF+  +    +LR A     I IIL
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +GNKSDLV  R VS  +    A      F E SA    NV   F  +++++
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGK---IIKAQIWDT 84
           ++VV+IG+  VGKS + + F       DS    +G +   RT+ ++G+   II   +W+ 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 85  AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIIL 138
            G+  +       V  AY       ++VY IT R SF+  +    +LR A     I IIL
Sbjct: 98  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +GNKSDLV  R VS  +    A      F E SA    NV   F  +++++
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++GK ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
           Y  +    Y      ++ + I    S +++  +W  E++ H   ++ IIL+GNK DL
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGK---IIKAQIWDT 84
           ++VV+IG+  VGKS + + F       DS    +G +   RT+ ++G+   II   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 85  AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIIL 138
            G+  +       V  AY       ++VY IT R SF+  +    +LR A     I IIL
Sbjct: 67  KGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +GNKSDLV  R VS  +    A      F E SA    NV   F  +++++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGK---IIKAQIWDT 84
           ++VV+IG+  VGKS + + F       DS    +G +   RT+ ++G+   II   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 85  AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIIL 138
            G+  +       V  AY       ++VY IT R SF+  +    +LR A     I IIL
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +GNKSDLV  R VS  +    A      F E SA    NV   F  +++++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K +F      T+  E     V ++G+ ++  +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDL 145
           Y  +    Y  +   ++ + I    S ++V  +W+ E+  H    + IIL+G K DL
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDL 126

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 41  KSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG 100
           KS +  +F    F      TI  +F  + + ++      +I DTAG E++ ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 101 ALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSIRIILIGNKSDLVDMRAVSAEDAVEF 159
             G ++VY +  +QSF  +    +++ R      + +IL+GNK DL   R VS+ +    
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           AE+ G  F E SA +   VD  F  +++++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  GQ
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 376
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 434
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
           L D M+    ++ +      D+  +   + A +GD +
Sbjct: 435 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING--KIIKA 79
           P  +    K+V++GD   GK+ +L    K+ +    ++ +   F+  T  +    + ++ 
Sbjct: 5   PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVEL 61
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH-VARWVEELRAHADSSIRIIL 138
            +WDT+G   Y  V    Y  +   ++ +DI++ ++ D  + +W  E+  +  S+ R++L
Sbjct: 62  SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-RVLL 120
Query: 139 IGNKSDL 145
           IG K+DL
Sbjct: 121 IGCKTDL 127

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 20/179 (11%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING--KIIKA 79
           P  +    K+V++GD   GK+ +L    K+ +    ++ +   F+  T  +    + ++ 
Sbjct: 4   PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVEL 60
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH-VARWVEELRAHADSSIRIIL 138
            +WDT+G   Y  V    Y  +   ++ +DI++ ++ D  + +W  E+  +  S+ R++L
Sbjct: 61  SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-RVLL 119
Query: 139 IGNKSDL-VDMR-----------AVSAEDAVEFAEDQGL-FFSEASALNGDNVDTAFFR 184
           IG K+DL  D+             +S E     A+  G   + E SA   +    + FR
Sbjct: 120 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 178

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  GQ
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 54
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 55  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 112
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
           L D M+    ++ +      D+  +   + A +GD +
Sbjct: 113 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 149

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING--KIIKA 79
           P  +    K+V++GD   GK+ +L    K+ +    ++ +   F+  T  +    + ++ 
Sbjct: 21  PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVEL 77
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH-VARWVEELRAHADSSIRIIL 138
            +WDT+G   Y  V    Y  +   ++ +DI++ ++ D  + +W  E+  +  S+ R++L
Sbjct: 78  SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST-RVLL 136
Query: 139 IGNKSDL 145
           IG K+DL
Sbjct: 137 IGCKTDL 143

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  GQ
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 67
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 68  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 125
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
           L D M+    ++ +      D+  +   + A +GD +
Sbjct: 126 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 162

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  GQ
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 66
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 124
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
           L D M+    ++ +      D+  +   + A +GD +
Sbjct: 125 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 161

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  GQ
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 54
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 55  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 112
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
           L D M+    ++ +      D+  +   + A +GD +
Sbjct: 113 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 149

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           V+KV+++G   VGKS +   F   E   ++++  G  +  R++ ++G+     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIILIGNKSDLV 146
           +  R +           V+VY +T + SF+  +    +LR A     + IIL+GNKSDLV
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             R VS ++    A      F E SA    NV   F  ++++I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           V+KV+++G   VGKS +   F   E   ++++  G  +  R++ ++G+     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIILIGNKSDLV 146
           +  R +           V+VY +T + SF+  +    +LR A     + IIL+GNKSDLV
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             R VS ++    A      F E SA    NV   F  ++++I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           V+KV+++G   VGKS +   F   E   ++++  G  +  R++ ++G+     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIILIGNKSDLV 146
           +  R +           V+VY +T + SF+  +    +LR A     + IIL+GNKSDLV
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             R VS ++    A      F E SA    NV   F  ++++I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
           ++P       ++ ++G    GK+  ++     +F  D   T+G  F  R VT     IK 
Sbjct: 14  LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK- 70
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIIL 138
            IWD  GQ R+R++   Y RG    V + D   R+  +     +  L        I +++
Sbjct: 71  -IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLV 129
Query: 139 IGNKSDL---VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
           +GNK DL   +D + +  +  +   +D+ +     S    DN+D     L+Q
Sbjct: 130 LGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  G 
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 67
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 68  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 125
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
           L D M+    ++ +      D+  +   + A +GD +
Sbjct: 126 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 162

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  G 
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 56
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 57  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 114
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
           L D M+    ++ +      D+  +   + A +GD +
Sbjct: 115 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 151

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  G 
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 57
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 58  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 115
Query: 145 LVD-MRAVSAEDAVEFA--EDQGLFFSEASALNGDNV 178
           L D M+    ++ +      D+  +   + A +GD +
Sbjct: 116 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 152

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIG-VEFQTRTVTINGKIIKAQIWDTAGQE 88
           +++ +G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  GQ+
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 55
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVD 147
           + R +   YY G  G + V D   R   D   + +  +    +    IILI  NK DL D
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPD 115
Query: 148 M---RAVSAEDAVEFAEDQGLFFSEASALNGDNV 178
                 +  +  +    D+  +   + A +GD +
Sbjct: 116 AXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 149

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
           ++P       ++ ++G    GK+  ++     +F  D   T+G  F  R +T     IK 
Sbjct: 14  LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK- 70
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIIL 138
            +WD  GQ R+R++   Y RG    V + D   ++  +     +  L        I +++
Sbjct: 71  -LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 129
Query: 139 IGNKSDL---VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
           +GNK DL   +D + +  +  +   +D+ +     S    DN+D     L+Q
Sbjct: 130 LGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
           ++P       KV+++G    GK+ IL +F+ NE    S  TIG   +   + IN    + 
Sbjct: 14  LVPRGSHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RF 68
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIIL 138
            +WD  GQE  R+  + YY      +VV D T R+        + ++ AH D     +++
Sbjct: 69  LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 128
Query: 139 IGNKSDLVDMRAVS 152
             NK D+ +   V+
Sbjct: 129 FANKQDVKECMTVA 142

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KV+++G    GK+ IL +F+ NE    S  TIG   +   + IN    +  +WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RFLMWDIGGQES 77
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDM 148
            R+  + YY      +VV D T R+        + ++ AH D     +++  NK D+ + 
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 149 RAVS 152
             V+
Sbjct: 138 MTVA 141

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA------RWVEELRAHADSSIRIILIGNK 142
           R R +   Y++   G + V D   R+    VA        V+ELR        ++L  NK
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV-----LLLFANK 127
Query: 143 SDLVDMRAVS 152
            DL +  A+S
Sbjct: 128 QDLPNAMAIS 137

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            ++ ++G    GK+  ++     +F  D   T+G  F  R +T     IK  +WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 87
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDL-- 145
           R+R++   Y RG    V + D   ++  +     +  L        I ++++GNK DL  
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 147
Query: 146 -VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
            +D + +  +  +   +D+ +     S    DN+D     L+Q
Sbjct: 148 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KV+++G    GK+ IL +F+ NE    S  TIG   +   + IN    +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RFLMWDIGGQES 72
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDM 148
            R+  + YY      +VV D T R+        + ++ AH D     +++  NK D+ + 
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 149 RAVS 152
             V+
Sbjct: 133 MTVA 136

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---IIKAQIW 82
           D +FKV+++G+S VGKS +   F   +     +     +   R + ++ +   ++   IW
Sbjct: 21  DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 83  ---DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRA---HADSSIRI 136
              D  G  R   + +         ++V+ +T R+SF  V   +  LRA   H D  + +
Sbjct: 81  EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPV 133
Query: 137 ILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
           IL+GNKSDL   R VS E+    A        E SA    N    F
Sbjct: 134 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KV+++G    GK+ IL +F+ NE    S  TIG   +   + IN    +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RFLMWDIGGQES 72
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDM 148
            R+  + YY      +VV D T R+        + ++ AH D     +++  NK D+ + 
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 149 RAVS 152
             V+
Sbjct: 133 MTVA 136

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 18  ENMIPDKIDYVF-----KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI 72
           +N  P +   +F     +++++G  A GK+ IL +    E    +  TIG   +T    +
Sbjct: 150 QNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----V 204
Query: 73  NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS 132
             K I   +WD  GQ++ R +   Y++   G + V D   R+  +      E +R  A+ 
Sbjct: 205 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAED 262
Query: 133 SIR---IILIGNKSDLVDMRAVSAEDAVEFAEDQGL 165
            +R   +++  NK DL +     A +A E  +  GL
Sbjct: 263 ELRDAVLLVFANKQDLPN-----AMNAAEITDKLGL 293

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---IIKAQIW 82
           D VFKV+++G+S VGKS +   F   +     +     +   R + ++ +   +I   IW
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 83  ---DTAG--QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRA---HADSSI 134
              D  G  Q+       A+       ++V+ +T R+SF  V   +  LRA   H D  +
Sbjct: 70  EQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--L 120
Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFA 160
            +IL+GNKSDL   R VS E+    A
Sbjct: 121 PVILVGNKSDLARSREVSLEEGRHLA 146

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---IIKAQIW-- 82
           VFKV+++G+S VGKS +   F   +     +     +   R + ++ +   +I   IW  
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 83  -DTAG--QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRA---HADSSIRI 136
            D  G  Q+       A+       ++V+ +T R+SF  V   +  LRA   H D  + +
Sbjct: 62  GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPV 112
Query: 137 ILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF 182
           IL+GNKSDL   R VS E+    A        E SA    N    F
Sbjct: 113 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSDL 145
           + R +   Y++   G + V D   R+  +      E +R  A+  +R   +++  NK DL
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 113
Query: 146 VDMRAVSAEDAVEFAEDQGL 165
            +     A +A E  +  GL
Sbjct: 114 PN-----AMNAAEITDKLGL 128

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSDL 145
           + R +   Y++   G + V D   R+  +      E +R  A+  +R   +++  NK DL
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 130
Query: 146 VDMRAVSAEDAVEFAEDQGL 165
            +     A +A E  +  GL
Sbjct: 131 PN-----AMNAAEITDKLGL 145

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSDL 145
           + R +   Y++   G + V D   R+  +      E +R  A+  +R   +++  NK DL
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 129
Query: 146 VDMRAVSAEDAVEFAEDQGL 165
            +     A +A E  +  GL
Sbjct: 130 PN-----AMNAAEITDKLGL 144

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 31  VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY 90
           + ++G    GKS +  +F    F  +    +   + +   T++ + +  ++ DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTP 82
Query: 91  RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA---DSSIRIILIGNKSDLVD 147
           R     Y   A   +VVY +  RQSFD  + ++E L  HA     SI  +L+GNK D+  
Sbjct: 83  RNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 148 MRAVSAEDAVEFAEDQGLFFSEASA-LNGDNVDTAFFRLLQE 188
            R V+  + V  A   G  F E SA L+ ++V   F   ++E
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 30  KVVVIGDSAVGKSQILSRF--TKNEFFFDSKSTIGVEFQTRTVTINGKIIK---AQIWDT 84
           K+ ++G++  GK+ +L +   TK        +T+G++ +   + I  K  +     +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQS-FDHVARWVEELRAHADSSIRIILIGNKS 143
           AG+E + +    +       + VYD++K Q+  D    W+  ++A A SS  +IL+G   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSP-VILVGTHL 122
Query: 144 DLVDMRAVSA 153
           D+ D +   A
Sbjct: 123 DVSDEKQRKA 132

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 30  KVVVIGDSAVGKSQILSRF--TKNEFFFDSKSTIGVEFQTRTVTINGKIIK---AQIWDT 84
           K+ ++G++  GK+ +L +   TK        +T+G++ +   + I  K  +     +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQS-FDHVARWVEELRAHADSSIRIILIGNKS 143
           AG+E + +    +       + VYD++K Q+  D    W+  ++A A SS  +IL+G   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 144 DLVDMRAVSA 153
           D+ D +   A
Sbjct: 121 DVSDEKQRKA 130

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Query: 41  KSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG 100
           KS ++ RF K  F      TI   ++ + ++ +  +   QI DT G  ++ A+       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 101 ALGAVVVYDITKRQSFDHVA---RWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAV 157
               ++V+ +T +QS + +    + + +++   +  I ++L+GNK D    R V   +A 
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNKCDETQ-REVDTREAQ 137
Query: 158 EFAEDQGLFFSEASALNGDNVDTAFFRLL 186
             A++    F E SA    NV   F  LL
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELL 166

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 15/140 (10%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  G +
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSDL 145
           + R +   Y++   G + V D   R+  +      E +R  A+  +R   +++  NK DL
Sbjct: 58  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 115
Query: 146 VDMRAVSAEDAVEFAEDQGL 165
            +     A +A E  +  GL
Sbjct: 116 PN-----AMNAAEITDKLGL 130

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           +++++G  A GK+ IL +    E    +  TIG   +T    +  + I   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEVV-TTIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVDM 148
            R +   YY    G + V D   R+  D     +  +    +    IIL+  NK DL + 
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPN- 132
Query: 149 RAVSAEDAVE-----FAEDQGLFFSEASALNGDNVDTAF 182
            A+SA +  E        ++  F     A  GD +   F
Sbjct: 133 -AMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGF 170

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSIR---IILIGNKSD 144
           + R +   YY+     + V D   R   D +    EEL +   +  +R   +++  NK D
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDR---DRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 145 L---VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178
           L   + +  V+ +  ++  +++  +   + A NGD +
Sbjct: 130 LPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGL 166

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G    GK+ +L +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS--SIRIILIGNKSDLV 146
           R R++   YYR   G + V D   R      AR V +   + D   +   ++  NK DL 
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGE-AREVMQRMLNEDELRNAAWLVFANKQDLP 114
Query: 147 DMRAVSAEDAVEFAEDQGL 165
           +     A  A E  E  GL
Sbjct: 115 E-----AMSAAEITEKLGL 128

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G    GK+ +L +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS--SIRIILIGNKSDLV 146
           R R++   YYR   G + V D   R      AR V +   + D   +   ++  NK DL 
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGE-AREVMQRMLNEDELRNAAWLVFANKQDLP 131
Query: 147 DMRAVSAEDAVEFAEDQGL 165
           +     A  A E  E  GL
Sbjct: 132 E-----AMSAAEITEKLGL 145

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G    GK+ +L +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR---IILIGNKSDL 145
           R R++   YYR   G + V D   R      AR V + R   +  +R    ++  NK DL
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDRSRIGE-AREVMQ-RMLNEDELRNAVWLVFANKQDL 130
Query: 146 VDMRAVSAEDAVEFAEDQGL 165
            +     A  A E  E  GL
Sbjct: 131 PE-----AMSAAEITEKLGL 145

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 9/153 (5%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           KV+++G    GK+ IL +F  NE    S  TIG   +   V    K     +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVV----KNTHFLMWDIGGQES 72
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDL--- 145
            R+  + YY      ++V D   R+        +  + AH D     +LI  NK D+   
Sbjct: 73  LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGC 132
Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178
           +    +S    +   +D         AL G+ +
Sbjct: 133 MTAAEISKYLTLSSIKDHPWHIQSCCALTGEGL 165

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSIR---IILIGNKSD 144
           + R +   Y++   G + V D   R   D V    +EL R   +  +R   +++  NK D
Sbjct: 76  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 132
Query: 145 LVDMRAVSAEDAVEFAEDQGL 165
           L +     A +A E  +  GL
Sbjct: 133 LPN-----AMNAAEITDKLGL 148

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 11/176 (6%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
            +++++G    GK+ IL +F   +   D+ S T+G  F  +T+   G   K  IWD  GQ
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGEDI--DTISPTLG--FNIKTLEHRG--FKLNIWDVGGQ 70
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDL- 145
           +  R+    Y+    G + V D   RQ      R ++ L      +   +++  NK DL 
Sbjct: 71  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 130
Query: 146 --VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 199
             +   A+     ++            SA+ G+N+      LL +I   +   +LE
Sbjct: 131 GALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRIFTADLE 186

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVD 147
           + R +   Y++   G + V D   R+     A  ++++    +    ++L+  NK D+ +
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 148 MRAVS 152
              VS
Sbjct: 145 AMPVS 149

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
            +++++G    GK+ IL +F   +   D+ S T+G  F  +T+   G   K  IWD  GQ
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDV--DTISPTLG--FNIKTLEHRG--FKLNIWDVGGQ 72
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLV 146
           +  R+    Y+    G + V D   RQ      R ++ L      +   +++  NK DL 
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
Query: 147 DMRAVSA-EDAVEF 159
              + +A ++A+E 
Sbjct: 133 GALSCNAIQEALEL 146

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
            +++++G    GK+ IL +F   +   D+ S T+G  F  +T+   G   K  IWD  GQ
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDV--DTISPTLG--FNIKTLEHRG--FKLNIWDVGGQ 72
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLV 146
           +  R+    Y+    G + V D   RQ      R ++ L      +   +++  NK DL 
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
Query: 147 DMRAVSA-EDAVEF 159
              + +A ++A+E 
Sbjct: 133 GALSXNAIQEALEL 146

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 19/159 (11%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G    GK+ IL R    E    +K TIG   +T    ++ K +K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET----LSYKNLKLNVWDLGGQT 73
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFD------HVARWVEELRAHADSSIRIILIGNK 142
             R     YY      + V D T +          H+    EEL+  A     +++  NK
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-----LLVFANK 128
Query: 143 SD---LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV 178
            D    +    VS E  +   +D+      +SA+ G+ +
Sbjct: 129 QDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGI 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-107
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-105
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-105
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-105
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-105
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-105
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-104
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-104
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-103
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-103
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-103
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-102
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-102
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-102
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-101
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-101
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-101
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-100
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-100
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-100
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-100
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-99
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-99
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	4e-99
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	4e-99
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	5e-99
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	6e-99
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	3e-98
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-98
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-97
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	3e-97
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	5e-97
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	6e-97
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-96
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	4e-96
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-94
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	8e-94
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	9e-93
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	3e-92
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-88
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	8e-87
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-84
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-79
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-78
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-76
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	7e-73
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	4e-72
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-71
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-71
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	6e-71
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-70
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-70
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	5e-69
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	9e-68
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-66
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-65
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-63
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-63
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	6e-63
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	6e-63
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-61
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-61
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-61
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-61
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	6e-61
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	7e-61
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	4e-56
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-53
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-53
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	6e-45
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	3e-40
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	6e-40
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-39
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-39
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-38
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	5e-38
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	6e-36
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-35
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-35
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-35
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	6e-35
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-34
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	7e-27
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-22
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-21
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	3e-15
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	4e-14
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	7e-14
3llu_A	196	RAS-related GTP-binding protein C; structural geno	8e-14
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	8e-14
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-13
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	3e-13
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	4e-13
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	6e-13
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	7e-13
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-12
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-12
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-12
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-11
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	1e-09
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	9e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-08
2ged_A	193	SR-beta, signal recognition particle receptor beta	6e-08
1nrj_B	218	SR-beta, signal recognition particle receptor beta	7e-08
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	3e-04
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	8e-04
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	9e-04

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  308 bits (790), Expect = e-107
 Identities = 114/216 (52%), Positives = 149/216 (68%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
               D +FK+V+IGDS VGKS +LSRFTKNEF  DSKSTIGVEF TRT+ I GK IKAQI
Sbjct: 7   GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQI 66

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDTAGQERYRA+TSAYYRGA+GA++VYDI+K  S+++   W+ ELR +AD ++ + LIGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGN 126

Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECG 201
           KSDL  +RAV  E++  FA++  L F+E SALN +NVD AF  L+  IY  VSK +++ G
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLG 186

Query: 202 NGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCSC 237
           +   +G    A +            +E KK +  +C
Sbjct: 187 DSSANGNANGASAPNGPTISLTPTPNENKKANGNNC 222

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  301 bits (774), Expect = e-105
 Identities = 102/192 (53%), Positives = 140/192 (72%), Gaps = 2/192 (1%)

Query: 7   GDATDHRHQQQENM--IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVE 64
           G +  H H     +    +  ++VFKVV+IG+S VGK+ +LSRFT+NEF  DS++TIGVE
Sbjct: 2   GSSHHHHHHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVE 61

Query: 65  FQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVE 124
           F TRTV +    +KAQIWDTAG ERYRA+TSAYYRGA+GA++V+D+TK Q++  V RW++
Sbjct: 62  FSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLK 121

Query: 125 ELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184
           EL  HA+++I ++L+GNKSDL   R V  E+A  FAE+ GL F E SAL+  NV+ AF  
Sbjct: 122 ELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET 181

Query: 185 LLQEIYGAVSKK 196
           +L+EI+  VSK+
Sbjct: 182 VLKEIFAKVSKQ 193

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  301 bits (772), Expect = e-105
 Identities = 88/191 (46%), Positives = 122/191 (63%), Gaps = 1/191 (0%)

Query: 8   DATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQT 67
            ++ H H     ++P    Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  
Sbjct: 2   GSSHHHHHHSSGLVPRG-SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA 60

Query: 68  RTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR 127
           R V I+GK IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R++F+H+  W+E+ R
Sbjct: 61  RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR 120

Query: 128 AHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
            H+ S++ I+LIGNKSDL   R V  E+   FA + GL F E SA    NV+ AF    +
Sbjct: 121 QHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180

Query: 188 EIYGAVSKKEL 198
           EIY  + +   
Sbjct: 181 EIYRKIQQGLF 191

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  301 bits (772), Expect = e-105
 Identities = 80/177 (45%), Positives = 119/177 (67%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
           +  D++FK +VIG++  GKS +L +F + +F  DS  TIGVEF ++ + + GK +K QIW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
           DTAGQER+R+VT +YYRGA GA++VYDIT R++++ +  W+ + R  A  +I IIL GNK
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124

Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 199
            DL   R V+  +A  FA++  L F E SAL G+NV+ AF +  ++I   +   EL+
Sbjct: 125 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  301 bits (772), Expect = e-105
 Identities = 87/196 (44%), Positives = 125/196 (63%), Gaps = 4/196 (2%)

Query: 7   GDATDHRHQQQENMIP---DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGV 63
           G +  H H     ++P      D++FK +VIG +  GKS +L +F +N+F  DS  TIGV
Sbjct: 2   GSSHHHHHHSS-GLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV 60

Query: 64  EFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWV 123
           EF +R V + GK +K QIWDTAGQER+R+VT +YYRGA GA++VYDIT R++++ +A W+
Sbjct: 61  EFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWL 120

Query: 124 EELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183
            + R  A  +I +IL GNK DL   R V+  +A  FA++  L F E SAL G+NV+ AF 
Sbjct: 121 TDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 180

Query: 184 RLLQEIYGAVSKKELE 199
           +  + I   +   EL+
Sbjct: 181 KCARTILNKIDSGELD 196

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  300 bits (771), Expect = e-105
 Identities = 109/183 (59%), Positives = 141/183 (77%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++GK IKAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQERYR +TSAYYRGA+GA++VYDI K  ++++V RW++ELR HADS+I I+L+GNKSDL
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKV 205
             +RAV  ++A  FAE   L F E SAL+  NV+ AF  +L EIY  VS+K++       
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182

Query: 206 DGP 208
           + P
Sbjct: 183 ESP 185

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  299 bits (768), Expect = e-104
 Identities = 107/169 (63%), Positives = 136/169 (80%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
            D+ DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++GK IKAQI
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDTAG ERYRA+TSAYYRGA+GA++VYDI K  ++++V RW++ELR HADS+I I+L+GN
Sbjct: 83  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142

Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           KSDL  +RAV  ++A  FAE  GL F E SAL+  NV+ AF  +L EIY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  299 bits (767), Expect = e-104
 Identities = 70/171 (40%), Positives = 109/171 (63%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
               K+V++GD   GKS ++ RF K++F    +STIG  F ++T+ +N   +K +IWDTA
Sbjct: 10  SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 69

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQERY ++   YYRGA  A++V+D+T + SF+   +WV+EL+A  + ++ + L GNKSDL
Sbjct: 70  GQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL 129

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           +D R V+AEDA  +A++ GLFF E SA    NV   F+ + + +      +
Sbjct: 130 LDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  296 bits (761), Expect = e-103
 Identities = 73/190 (38%), Positives = 107/190 (56%)

Query: 7   GDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQ 66
           G +  H H     +         KV ++GD+ VGKS I+ RF ++ F  +   TIG  F 
Sbjct: 2   GSSHHHHHHSSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFM 61

Query: 67  TRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL 126
           T+TV    ++ K  IWDTAGQER+ ++   YYRG+  AV+VYDITK+ SF  + +WV+EL
Sbjct: 62  TKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL 121

Query: 127 RAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186
           + H   +I + + GNK DL D+R V  +DA E+AE  G    E SA N  N++  F  + 
Sbjct: 122 KEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181

Query: 187 QEIYGAVSKK 196
           ++I      +
Sbjct: 182 RQIPPLDPHE 191

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  296 bits (759), Expect = e-103
 Identities = 84/215 (39%), Positives = 134/215 (62%), Gaps = 11/215 (5%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
            + DY+FK+++IG+S VGKS +L RF+ + +  D  STIGV+F+ +TV ++GK +K QIW
Sbjct: 3   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
           DTAGQER+R +TS+YYRG+ G ++VYD+T ++SF+ V  W++E+  +A S++  +L+GNK
Sbjct: 63  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 122

Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 202
            DL D R V  + A EFA+   + F E SAL+  NV+ AF  + ++I  ++S++ L    
Sbjct: 123 CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETT 182

Query: 203 GKVDGPPMLAGSKIDVISGADLEISEMKKLSTCSC 237
            K +                +L+   +     C C
Sbjct: 183 QKKEDKG-----------NVNLKGQSLTNTGGCCC 206

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  295 bits (757), Expect = e-103
 Identities = 87/169 (51%), Positives = 121/169 (71%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
           P    Y+FK ++IGD  VGKS +L +FT+ +F  D   TIGVEF TR + ++G+ IK QI
Sbjct: 9   PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 68

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDTAGQER+RAVT +YYRGA GA++VYDIT+R +++H++ W+ + R   + +  IILIGN
Sbjct: 69  WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128

Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           K+DL   R V+ E+A +FAE+ GL F EASA  G+NV+ AF    ++IY
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  294 bits (754), Expect = e-102
 Identities = 79/187 (42%), Positives = 120/187 (64%)

Query: 9   ATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTR 68
           ++ H H     ++P   DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +
Sbjct: 3   SSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK 62

Query: 69  TVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRA 128
           TV  + K IK QIWDTAGQERYR +T+AYYRGA+G +++YDI  ++SF  V  W  +++ 
Sbjct: 63  TVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT 122

Query: 129 HADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
           ++  + ++IL+GNK DL D R V AED    A+D G  F EASA    NV   F RL+  
Sbjct: 123 YSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDV 182

Query: 189 IYGAVSK 195
           I   +++
Sbjct: 183 ICEKMNE 189

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  293 bits (752), Expect = e-102
 Identities = 81/184 (44%), Positives = 120/184 (65%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
            + DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++GK IK QIW
Sbjct: 11  PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
           DTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V +W++E+  +A  ++  +L+GNK
Sbjct: 71  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 130

Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGN 202
            DL   + V    A EFA+  G+ F E SA N  NV+ +F  +  EI   +       G 
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA 190

Query: 203 GKVD 206
            K +
Sbjct: 191 EKSN 194

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  293 bits (752), Expect = e-102
 Identities = 75/196 (38%), Positives = 119/196 (60%), Gaps = 4/196 (2%)

Query: 8   DATDHRHQQQENMIP----DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGV 63
            ++ H H     ++P    +  D++FK+V+IG++ VGK+ ++ RFT+  F     +TIGV
Sbjct: 2   GSSHHHHHHSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV 61

Query: 64  EFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWV 123
           +F  +TV ING+ +K QIWDTAGQER+R++T +YYR A   ++ YDIT  +SF  +  W+
Sbjct: 62  DFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWL 121

Query: 124 EELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF 183
            E+  +A + +  +L+GNK DL + R VS + A EF+E Q +++ E SA   DNV+  F 
Sbjct: 122 REIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181

Query: 184 RLLQEIYGAVSKKELE 199
            L   +     +  L 
Sbjct: 182 DLACRLISEARQNTLV 197

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  291 bits (747), Expect = e-101
 Identities = 81/178 (45%), Positives = 119/178 (66%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IGDS VGK+ +L RF+++ F     STIG++F+ RT+ ++GK IK QIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA+G ++VYDIT  +SFD++  W+  +  HA + +  +++GNK D+
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203
            D R VS E   + A D G+ F E SA    NV+ AFF L ++I   + K       G
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATAAG 183

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  290 bits (744), Expect = e-101
 Identities = 64/165 (38%), Positives = 95/165 (57%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
            Y FKVV++G+  VGK+ ++ R+ +N+F     +T+G  F T+ + I GK +   IWDTA
Sbjct: 4   AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTA 63

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+ A+   YYR + GA++VYDIT   SF  V  WV+ELR    + I + ++GNK DL
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
              R VS ++A  +AE  G      SA     ++  F  L + + 
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  290 bits (745), Expect = e-101
 Identities = 73/188 (38%), Positives = 114/188 (60%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
               DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +T+  N K IK QI
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDTAG ERYR +T+AYYRGA+G +++YDIT  +SF+ V  W  +++ ++  + +++L+GN
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121

Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECG 201
           K D+ D R VS+E   + A+  G  F EASA +  NV   F RL+  I   +S+      
Sbjct: 122 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 181

Query: 202 NGKVDGPP 209
                   
Sbjct: 182 PAVTGAKQ 189

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  289 bits (741), Expect = e-100
 Identities = 69/162 (42%), Positives = 97/162 (59%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            KV ++GD+ VGKS I+ RF ++ F  +   TIG  F T+TV    ++ K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+RA+   YYRG+  A++VYDITK ++F  +  WV ELR H   SI + + GNK DL D+
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           R V   DA ++A+     F E SA N  N++  F  + + I 
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  289 bits (742), Expect = e-100
 Identities = 84/195 (43%), Positives = 122/195 (62%), Gaps = 9/195 (4%)

Query: 5   MSGDATDHRHQQQENMI---------PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFF 55
           M      H H   EN+            + DY+FK+++IGDS VGKS +L RF  + +  
Sbjct: 1   MGSSHHHHHHSSGENLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 60

Query: 56  DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS 115
              STIGV+F+ RT+ ++GK IK QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++S
Sbjct: 61  SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 120

Query: 116 FDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG 175
           F++V +W++E+  +A  ++  +L+GNK DL   + V    A EFA+  G+ F E SA N 
Sbjct: 121 FNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 180

Query: 176 DNVDTAFFRLLQEIY 190
            NV+ +F  +  EI 
Sbjct: 181 TNVEQSFMTMAAEIK 195

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  287 bits (737), Expect = e-100
 Identities = 74/164 (45%), Positives = 105/164 (64%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
             FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
           QERY ++   YYRGA  A+VVYDIT  +SF     WV+EL+  A  +I I L GNK+DL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           + RAV  ++A  +A+D  L F E SA    NV+  F  + +++ 
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  286 bits (735), Expect = e-100
 Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 4/175 (2%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI-IKAQIWDT 84
               K+VV+GD A GK+ + + F +  F    K TIG++F  R +T+ G + +  QIWD 
Sbjct: 4   MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63

Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARW---VEELRAHADSSIRIILIGN 141
            GQ     +   Y  GA G ++VYDIT  QSF+++  W   V+++   +++   + L+GN
Sbjct: 64  GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123

Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           K DL  MR +  E  + F ++ G      SA  GD+V   F ++  EI G    K
Sbjct: 124 KIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  286 bits (735), Expect = 1e-99
 Identities = 73/188 (38%), Positives = 118/188 (62%), Gaps = 5/188 (2%)

Query: 8   DATDHRHQQQENMIP----DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGV 63
            ++ H H     ++P       D+  +V++IG   VGK+ ++ RFT + F    KST+GV
Sbjct: 2   GSSHHHHHHSSGLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV 61

Query: 64  EFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWV 123
           +F+ +TV + GK I+ QIWDTAGQER+ ++TSAYYR A G ++VYDITK+++FD + +W+
Sbjct: 62  DFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM 121

Query: 124 EELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF 182
           + +  +A     ++L+GNK D    R ++ +   +FA+   G+ F EASA +  NVD  F
Sbjct: 122 KMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181

Query: 183 FRLLQEIY 190
            +L+ +I 
Sbjct: 182 LKLVDDIL 189

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  286 bits (733), Expect = 2e-99
 Identities = 63/166 (37%), Positives = 105/166 (63%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
              FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTA
Sbjct: 12  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R++  +Y R +  AVVVYDIT   SF   ++W++++R    S + I+L+GNK+DL
Sbjct: 72  GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 131

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
            D R VS E+    A++  + F E SA  G NV   F R+   + G
Sbjct: 132 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  286 bits (734), Expect = 4e-99
 Identities = 63/178 (35%), Positives = 107/178 (60%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
              FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTA
Sbjct: 14  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           G ER+R++  +Y R +  AVVVYDIT   SF    +W++++R    S + I+L+GNK+DL
Sbjct: 74  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 133

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203
            D R VS E+    A++  + F E SA  G NV   F R+   + G  S ++    + 
Sbjct: 134 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 191

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  285 bits (732), Expect = 4e-99
 Identities = 74/184 (40%), Positives = 113/184 (61%), Gaps = 2/184 (1%)

Query: 9   ATDHRHQ--QQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQ 66
              H H   ++        DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+
Sbjct: 2   HHHHHHSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFK 61

Query: 67  TRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL 126
            +TV  + K +K QIWDTAGQERYR +T+AYYRGA+G +++YDIT  +SF+ V  W  ++
Sbjct: 62  VKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI 121

Query: 127 RAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186
           + ++  + ++IL+GNK D+ + R V  E     AE  G  F EASA    +V  AF RL+
Sbjct: 122 KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181

Query: 187 QEIY 190
             I 
Sbjct: 182 DAIC 185

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  284 bits (730), Expect = 5e-99
 Identities = 71/176 (40%), Positives = 109/176 (61%), Gaps = 1/176 (0%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQ 80
            D  D  FKV+++GDS VGK+ +L RF    F   +  ST+G++F+ + + ++G  +K Q
Sbjct: 4   VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQ 63

Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIG 140
           +WDTAGQER+R+VT AYYR A   +++YD+T + SFD++  W+ E+  +A   + ++L+G
Sbjct: 64  MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123

Query: 141 NKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           NK D    R V  ED  + A++ GL F E SA  G NVD AF  + +E+     K 
Sbjct: 124 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  285 bits (732), Expect = 6e-99
 Identities = 80/170 (47%), Positives = 114/170 (67%), Gaps = 1/170 (0%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
            ++ D++FK+V++GD++VGK+ ++ RF    F     STIGV+F  +T+ I GK +K QI
Sbjct: 23  DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 82

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDTAGQER+R +T +YYR A GA++ YDITKR SF  V  W+E++R +A S+I  +LIGN
Sbjct: 83  WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142

Query: 142 KSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIY 190
           KSDL ++R VS  +A   AE    L   E SA +  NV+ AF R+  E+ 
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  283 bits (726), Expect = 3e-98
 Identities = 78/177 (44%), Positives = 110/177 (62%), Gaps = 1/177 (0%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
              D++FK+++IGDS VGKS +L RF  N F     +TIGV+F+ RTV ING+ +K QIW
Sbjct: 4   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
           DTAGQER+R +TS YYRG  G +VVYD+T  +SF +V RW+ E+  + D  +  IL+GNK
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNK 122

Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 199
           +D  + + V  EDA +FA   G+   E SA    NV+  F  + + +  A      +
Sbjct: 123 NDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAK 179

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  283 bits (727), Expect = 4e-98
 Identities = 80/203 (39%), Positives = 128/203 (63%), Gaps = 5/203 (2%)

Query: 5   MSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVE 64
           MSG     R     +      D + K+++IGDS VGKS +L RF +++F     +TIG++
Sbjct: 1   MSGL----RTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID 56

Query: 65  FQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVE 124
           F+ +TV INGK +K Q+WDTAGQER+R +T+AYYRGA+G ++VYD+T  ++F ++ +W +
Sbjct: 57  FKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFK 116

Query: 125 ELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR 184
            +  HA+   +++L+GNKSD+ + R V+A+     A++ G+ F E+SA N DNV+  FF 
Sbjct: 117 TVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175

Query: 185 LLQEIYGAVSKKELECGNGKVDG 207
           L + I   +   +L       +G
Sbjct: 176 LAKLIQEKIDSNKLVGVGNGKEG 198

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  283 bits (725), Expect = 1e-97
 Identities = 72/206 (34%), Positives = 121/206 (58%), Gaps = 14/206 (6%)

Query: 8   DATDHRHQQQENMIP---DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVE 64
            ++ H H     ++P      DY+ K++ +GDS VGK+  L R+T N+F     +T+G++
Sbjct: 2   GSSHHHHHHSSGLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGID 61

Query: 65  FQTRTVTINGKI----------IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ 114
           F+ + V  N +           +  Q+WDTAGQER+R++T+A++R A+G ++++D+T +Q
Sbjct: 62  FREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ 121

Query: 115 SFDHVARWVEELRAHADS-SIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASAL 173
           SF +V  W+ +L+A+A   +  I+LIGNK+DL D R V+   A E A+  G+ + E SA 
Sbjct: 122 SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 181

Query: 174 NGDNVDTAFFRLLQEIYGAVSKKELE 199
            G NV+ A   LL  I   + +   +
Sbjct: 182 TGQNVEKAVETLLDLIMKRMEQCVEK 207

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  282 bits (723), Expect = 1e-97
 Identities = 66/195 (33%), Positives = 109/195 (55%), Gaps = 11/195 (5%)

Query: 7   GDATDHRHQ-----QQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTI 61
           G +  H H       + +         +K+V+ GD+AVGKS  L R  KNEF  +  +T+
Sbjct: 2   GSSHHHHHHSSGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL 61

Query: 62  GVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR 121
           GV+FQ +T+ ++G+    Q+WDTAGQER+R++  +Y+R A G +++YD+T  +SF ++  
Sbjct: 62  GVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE 121

Query: 122 WVEELRAHADSSIRIILIGNKSDLVDM------RAVSAEDAVEFAEDQGLFFSEASALNG 175
           WV+ +   A  ++ I+L+GNK+D+ D       + V      + A   G  F E SA +G
Sbjct: 122 WVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG 181

Query: 176 DNVDTAFFRLLQEIY 190
            N+  A   L +E+ 
Sbjct: 182 SNIVEAVLHLAREVK 196

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  281 bits (720), Expect = 3e-97
 Identities = 72/192 (37%), Positives = 114/192 (59%), Gaps = 11/192 (5%)

Query: 19  NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN----- 73
           +M     DY+ K + +GDS VGK+ +L ++T  +F     +T+G++F+ + V        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61

Query: 74  -----GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRA 128
                G+ I  Q+WDTAG ER+R++T+A++R A+G ++++D+T  QSF +V  W+ +L+ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 121

Query: 129 HADS-SIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
           HA S +  I+L GNKSDL D RAV  E+A E AE  G+ + E SA NG N+  A   LL 
Sbjct: 122 HAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181

Query: 188 EIYGAVSKKELE 199
            I   + +   +
Sbjct: 182 LIMKRMERSVDK 193

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  280 bits (719), Expect = 5e-97
 Identities = 71/184 (38%), Positives = 110/184 (59%), Gaps = 2/184 (1%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
           + +    K+++IG+S VGKS +L RFT + F  +  +TIGV+F+ +T++++G   K  IW
Sbjct: 10  EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGN 141
           DTAGQER+R +T +YYRGA G ++VYD+T+R +F  +  W+ EL  +   + I  +L+GN
Sbjct: 70  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129

Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECG 201
           K D  + R V   + ++FA    + F EASA   D V  AF  L+++I       E E  
Sbjct: 130 KIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQ 188

Query: 202 NGKV 205
           N   
Sbjct: 189 NSGP 192

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  279 bits (716), Expect = 6e-97
 Identities = 76/170 (44%), Positives = 119/170 (70%), Gaps = 1/170 (0%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV INGK +K QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA+G ++VYDIT  ++F ++ +W + +  HA+   +++L+GNKSD+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSK 195
            + R V+A+     A++ G+ F E+SA N DNV+  FF L + I   +  
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  277 bits (712), Expect = 2e-96
 Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 1/165 (0%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           +   K+VV+G+ AVGKS ++ R+ K  F  D K TIGV+F  R + +N + ++  +WDTA
Sbjct: 3   EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQE + A+T AYYRGA   V+V+  T R+SF+ ++ W E++ A     I   L+ NK DL
Sbjct: 63  GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDL 121

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           +D   +  E+A   A+   L F   S     NV   F  L ++  
Sbjct: 122 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  277 bits (712), Expect = 4e-96
 Identities = 70/185 (37%), Positives = 105/185 (56%), Gaps = 6/185 (3%)

Query: 12  HRHQQQENMIPDK-IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTV 70
           H H    +++P      +FK++VIGDS VGK+ +  RF    F   +++TIGV+F+ R V
Sbjct: 3   HHHHHHGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAV 62

Query: 71  TINGKIIKAQIWDTAGQERYR-AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAH 129
            I+G+ IK Q+WDTAGQER+R ++   YYR     V VYD+T   SF  +  W+EE + H
Sbjct: 63  DIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH 122

Query: 130 ADSS-IRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASAL---NGDNVDTAFFRL 185
             ++ I  IL+GNK DL     V  + A +FA+   +   E SA    + D+V+  F  L
Sbjct: 123 LLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182

Query: 186 LQEIY 190
             ++ 
Sbjct: 183 AHKLK 187

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  274 bits (704), Expect = 1e-94
 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 9/200 (4%)

Query: 13  RHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTK--NEFFFDSKSTIGVEFQTRTV 70
             +++   I        KV V+G++ VGKS ++S FT   ++F  D   T GVE     V
Sbjct: 5   MVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPV 64

Query: 71  TINGKIIKAQIW--DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR- 127
           TI    +  +++  DTAG + Y+   S Y+ G   A++V+D++  +SF+    W E L+ 
Sbjct: 65  TIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKS 124

Query: 128 --AHADSSIRIILIGNKSDLVDMR-AVSAEDAVEFAEDQGLFFSEASA-LNGDNVDTAFF 183
                +  +R +L+ NK+DL   R  V  + A ++A    L F + SA   G + D  F 
Sbjct: 125 ARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFL 184

Query: 184 RLLQEIYGAVSKKELECGNG 203
            +    Y     K     + 
Sbjct: 185 SIATTFYRNYEDKVAAFQDA 204

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  273 bits (700), Expect = 8e-94
 Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 1/178 (0%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVE-FQTRTVTINGKIIKAQI 81
           ++ +  +K+ +IGD  VGK+  ++R     F  +  +T+G        +   G +IK  +
Sbjct: 6   ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNV 65

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDTAGQE+   +   YY GA GA++ +D+T R +  ++ARWV+E +A   +   I++  N
Sbjct: 66  WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125

Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 199
           K D+ + + +S +  +E  + +   + E SA    N    F  L +   G      + 
Sbjct: 126 KIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVS 183

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  268 bits (689), Expect = 9e-93
 Identities = 59/170 (34%), Positives = 100/170 (58%), Gaps = 6/170 (3%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
             +FKV+++GD  VGKS +++R+  N+F      TIGVEF  + + ++G  +  QIWDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGN 141
           GQER+R++ + +YRG+   ++ + +   QSF +++ W +E   +AD     S   +++GN
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 124

Query: 142 KSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIY 190
           K D+ + R VS E+A  +  D G   + E SA +  NV  AF   ++ + 
Sbjct: 125 KIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  269 bits (689), Expect = 3e-92
 Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 19/222 (8%)

Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
           M   K   + KV+++GDS VGK+ +++++   +F    K+TIG +F T+ V ++ +++  
Sbjct: 1   MTSRK-KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTM 59

Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSIR 135
           QIWDTAGQER++++  A+YRGA   V+V+D+T   +F  +  W +E    A      +  
Sbjct: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119

Query: 136 IILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSK 195
            +++GNK DL + +  +            + + E SA    NV+ AF  + +      ++
Sbjct: 120 FVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 179

Query: 196 KELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCSC 237
            EL                 I +    D          +CSC
Sbjct: 180 VELYNEF----------PEPIKL----DKNERAKASAESCSC 207

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  258 bits (661), Expect = 2e-88
 Identities = 65/178 (36%), Positives = 106/178 (59%), Gaps = 8/178 (4%)

Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-KIIK 78
           M   K   + KV+++GDS VGK+ ++ R+  +++    K+TIG +F T+ VT++G K+  
Sbjct: 1   MSSRK-KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT 59

Query: 79  AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD----SSI 134
            Q+WDTAGQER++++  A+YRGA   V+VYD+T   SF+++  W +E   HA+     + 
Sbjct: 60  MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119

Query: 135 RIILIGNKSDLVDM-RAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIY 190
             +++GNK D  +  + VS + A E A+  G +     SA N  NVDTAF  + +   
Sbjct: 120 PFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  255 bits (654), Expect = 8e-87
 Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 3/181 (1%)

Query: 19  NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIK 78
           +    +    FK+V++GD   GK+  + R    EF     +T+GVE        N   IK
Sbjct: 6   SAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 65

Query: 79  AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIIL 138
             +WDTAGQE++  +   YY  A  A++++D+T R ++ +V  W  +L    + +I I+L
Sbjct: 66  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 124

Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198
            GNK D+ D +      ++ F   + L + + SA +  N +  F  L +++ G  + + +
Sbjct: 125 CGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 182

Query: 199 E 199
            
Sbjct: 183 A 183

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  248 bits (635), Expect = 3e-84
 Identities = 66/202 (32%), Positives = 97/202 (48%), Gaps = 40/202 (19%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA------ 79
              +K V++G+S+VGKS I+ R TK+ F  ++ +TIG  F T  V +N   IK       
Sbjct: 5   KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEK 64

Query: 80  -------------------------------QIWDTAGQERYRAVTSAYYRGALGAVVVY 108
                                           IWDTAGQERY ++   YYRGA  A+VV+
Sbjct: 65  NNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVF 124

Query: 109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFS 168
           DI+   + D    WV +L+  ++    IIL+ NK D  +   V   +  ++A+D  L F 
Sbjct: 125 DISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFI 181

Query: 169 EASALNGDNVDTAFFRLLQEIY 190
           + SA  G N+   F+ L +EIY
Sbjct: 182 QTSAKTGTNIKNIFYMLAEEIY 203

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  234 bits (599), Expect = 2e-79
 Identities = 74/165 (44%), Positives = 104/165 (63%), Gaps = 3/165 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K+V++G++AVGKS I+ RF  N+F  + + TIG  F T+ VTIN   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV-- 146
           R+ ++   YYR A  A+VVYD+TK QSF     WV+EL   A   I I L+GNK D +  
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 147 -DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
              R V+ E+  + AE++GL F E SA  G+NV+  F  + ++I 
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  232 bits (595), Expect = 3e-78
 Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 5/191 (2%)

Query: 12  HRHQQ--QENMIPD-KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTR 68
           H H    +EN+    + D +FKV+++G+S VGKS +   F   +     +     +   R
Sbjct: 4   HHHHSSGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYER 63

Query: 69  TVTINGKIIKAQIWDTAGQERYRAV-TSAYYRGALGAVVVYDITKRQSFDHVARWVEEL- 126
            + ++ + +   ++D   Q            +     ++V+ +T R+SF  V   +  L 
Sbjct: 64  RIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLR 123

Query: 127 RAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186
                  + +IL+GNKSDL   R VS E+    A        E SA    N    F   +
Sbjct: 124 AGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 183

Query: 187 QEIYGAVSKKE 197
           ++I     +  
Sbjct: 184 RQIRLRRGRNH 194

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  227 bits (582), Expect = 1e-76
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 2/164 (1%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           VFKV+++G+S VGKS +   F   +     +     +   R + ++ + +   ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 88  ERYRAV-TSAYYRGALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSIRIILIGNKSDL 145
                       +     ++V+ +T R+SF  V   +  L        + +IL+GNKSDL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              R VS E+    A        E SA    N    F   +++I
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  218 bits (559), Expect = 7e-73
 Identities = 62/170 (36%), Positives = 95/170 (55%), Gaps = 2/170 (1%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
                 + KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++G+ ++  I
Sbjct: 12  SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDI 70

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIG 140
            DTAGQE Y A+   Y+R   G + V+ IT+ +SF   A + E+ LR   D ++  +L+G
Sbjct: 71  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130

Query: 141 NKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           NKSDL D R VS E+A   AE   + + E SA    NVD  FF L++EI 
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 180

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  216 bits (552), Expect = 4e-72
 Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 2/164 (1%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++G+ ++  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLV 146
           E Y A+   Y+R   G + V+ IT+ +SF   A + E+ LR   D ++  +L+GNKSDL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           D R VS E+A   A+   + + E SA    NVD  FF L++EI 
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  216 bits (553), Expect = 1e-71
 Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 2/185 (1%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
             + KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++G+ ++  I DTA
Sbjct: 12  LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTA 70

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSD 144
           GQE Y A+   Y+R   G + V+ IT+ +SF   A + E+ LR   D ++  +L+GNKSD
Sbjct: 71  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 130

Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGK 204
           L D R VS E+A   AE   + + E SA    NVD  FF L++EI     +   E    K
Sbjct: 131 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKK 190

Query: 205 VDGPP 209
                
Sbjct: 191 KRKSL 195

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  214 bits (547), Expect = 4e-71
 Identities = 38/181 (20%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEF--FFDSKSTIGVEFQTRTVTINGK---IIKAQIWD 83
            K++++G++  GK+ +L +  K +        +T+G++ +   + I  K    +   +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQS-FDHVARWVEELRAHADSSIRIILIGNK 142
            AG+E + +    +       + VYD++K Q+  D +  W+  ++A A SS  +IL+G  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTH 121

Query: 143 SDLVDMR---AVSAEDAVEFAEDQGL-FFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198
            D+ D +   A  ++   E    +G     +   +N      A  +L + I       ++
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKI 181

Query: 199 E 199
            
Sbjct: 182 R 182

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  213 bits (545), Expect = 6e-71
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 4/166 (2%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           +++VV++GD  VGK+ + S F   +   D    +G +   RT+T++G+     + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQER-DLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 88  ERYRAVTS--AYYRGALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSIRIILIGNKSD 144
           E+     S  +  +G    V+VY I  R SF+  +    +L R H    + IIL+GNK+D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           L   R VS E+    A      F E SA    NV   F  +++++ 
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLR 168

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  213 bits (544), Expect = 2e-70
 Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 4/181 (2%)

Query: 12  HRHQQQENMIPDKIDYV--FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRT 69
           H    +EN+    +  V   KVV++G   VGK+ +  +F + EF      T+   + ++ 
Sbjct: 6   HHSSGRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKI 64

Query: 70  VTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRA 128
           VT+        + DTAGQ+ Y  +  ++  G  G V+VY +T   SF  +    ++    
Sbjct: 65  VTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG 124

Query: 129 HADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
           H  + + ++L+GNK+DL   R V A +  + AE  G  F E+SA         F +++QE
Sbjct: 125 HGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQE 184

Query: 189 I 189
           I
Sbjct: 185 I 185

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  213 bits (544), Expect = 3e-70
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 7/183 (3%)

Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGK--- 75
           +  +  +  ++VV+IG+  VGKS + + F       DS    +G +   RT+ ++G+   
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 88

Query: 76  IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSI 134
           II   +W+  G+  +  +     +     ++VY IT R SF+  +    +L RA     I
Sbjct: 89  IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDI 146

Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS 194
            IIL+GNKSDLV  R VS  +    A      F E SA    NV   F  +++++     
Sbjct: 147 PIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRD 206

Query: 195 KKE 197
            KE
Sbjct: 207 SKE 209

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  208 bits (533), Expect = 5e-69
 Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 3/171 (1%)

Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKA 79
           M P       K+VV+G   VGKS +  +F ++ F  D   TI   + T+  +++G   + 
Sbjct: 2   MDPPP-SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARL 59

Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIIL 138
            I DTAGQE + A+   Y R   G ++V+ I  RQSF+ V +   + LR        ++L
Sbjct: 60  DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119

Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +GNK+DL   R V   +A  F     + + EASA    NVD AF +L++ +
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  205 bits (524), Expect = 9e-68
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 3/163 (1%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           V+KV+++G   VGKS +   F             G  +  R++ ++G+     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLV 146
           +  R +           V+VY +T + SF+  +    +  RA     + IIL+GNKSDLV
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             R VS ++    A      F E SA    NV   F  ++++I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  202 bits (517), Expect = 2e-66
 Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 7/174 (4%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGK---IIKAQIWDT 84
           ++VV+IG+  VGKS + + F       DS    +G +   RT+ ++G+   II   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66

Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL-RAHADSSIRIILIGNKS 143
            G+  +  +     +     ++VY IT R SF+  +    +L RA     I IIL+GNKS
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124

Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKE 197
           DLV  R VS  +    A      F E SA    NV   F  +++++      KE
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  199 bits (509), Expect = 2e-65
 Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 2/164 (1%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
              K+ ++G  +VGKS +  +F + +F      TI   F T+ +T+NG+    Q+ DTAG
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAG 63

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDL 145
           Q+ Y      Y     G ++VY +T  +SF+ +     + L       I I+L+GNK DL
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              R +S E+    AE     F E+SA         F R++ E 
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  193 bits (494), Expect = 3e-63
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +KVVV+G   VGKS +  +F    F      TI  +F  + + ++      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ ++   Y +   G ++VY +  +QSF  +    ++ +R      + +IL+GNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R VS+ +    AE+ G  F E SA +   VD  F  +++++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  193 bits (494), Expect = 4e-63
 Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           ++V V G   VGKS ++ RF K  F      T+   +  + ++ +  I   QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS--IRIILIGNKSDLV 146
           ++ A+           ++VY IT RQS + +    E++         I I+L+GNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             R V + +A   A      F E SA    NV   F  LL   
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  193 bits (492), Expect = 6e-63
 Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   +  + V I+G+     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   DS  + ++L+GNKSDL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V +  A + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  193 bits (493), Expect = 6e-63
 Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 3/170 (1%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQI 81
           P +    +K+VV+GD  VGKS +  +F +  F  D   TI   +  +   I+ +     +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDV 70

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIG 140
            DTAGQE + A+   Y R   G ++VY +T + SF+HV R+ + +    D  S  +IL+ 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130

Query: 141 NKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA-LNGDNVDTAFFRLLQEI 189
           NK DL+ +R V+ +   E A    + + E SA     NVD  F  L++ I
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  190 bits (484), Expect = 1e-61
 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 6/182 (3%)

Query: 12  HRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVT 71
           H H      +  +      + ++G    GKS +  +F    F  +    +   + +   T
Sbjct: 5   HHHSSGRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEET 63

Query: 72  INGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA- 130
           ++ + +  ++ DTA  +  R     Y   A   +VVY +  RQSFD  + ++E L  HA 
Sbjct: 64  VDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAK 122

Query: 131 --DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA-LNGDNVDTAFFRLLQ 187
               SI  +L+GNK D+   R V+  + V  A   G  F E SA L+ ++V   F   ++
Sbjct: 123 ETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

Query: 188 EI 189
           E 
Sbjct: 183 EA 184

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  190 bits (485), Expect = 2e-61
 Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 4/192 (2%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
              ++VVV G   VGKS ++ RF K  F      TI   +  + ++ +  +   QI DT 
Sbjct: 6   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTT 64

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR--AHADSSIRIILIGNKS 143
           G  ++ A+           ++V+ +T +QS + +    + +     +   I ++L+GNK 
Sbjct: 65  GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC 124

Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNG 203
           D    R V   +A   A++    F E SA    NV   F  LL           ++    
Sbjct: 125 DETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRS 183

Query: 204 KVDGPPMLAGSK 215
                      K
Sbjct: 184 GKQKRTDRVKGK 195

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  189 bits (482), Expect = 2e-61
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI   ++ + V ++ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT + +F+ +    E+ LR      + +IL+GNK DL D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 148 MRAVSAEDAVEFA-EDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  E     A +     F E+SA +  NV+  F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  189 bits (483), Expect = 3e-61
 Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 3/180 (1%)

Query: 11  DHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTV 70
            H H      +  +    +K+VV+G   VGKS +  +  +N F  +   TI   +  + V
Sbjct: 4   HHHHSSGRENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQV 62

Query: 71  TINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA 130
            I+G+     I DTAGQE Y A+   Y R   G + V+ I   +SF  +  + E+++   
Sbjct: 63  VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK 122

Query: 131 DS-SIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           DS  + ++L+GNK DL   R V  + A E A+  G+ F E SA     V+ AF+ L++EI
Sbjct: 123 DSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  188 bits (481), Expect = 6e-61
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+G+     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ +  + E+  R      + ++L+GNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R V  + A + A   G+ F E SA     VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  188 bits (480), Expect = 7e-61
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 4/166 (2%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
               K+ + G + VGKS ++ RF    F ++   T+   +     TI+ +++  +I DTA
Sbjct: 26  SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTA 84

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSD 144
           GQE        + R   G V+VYDIT R SF+ V              ++ +IL+GNK+D
Sbjct: 85  GQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143

Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASA-LNGDNVDTAFFRLLQEI 189
           L   R VS E+  + A +    F E SA     N+   F+ L +E+
Sbjct: 144 LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  186 bits (473), Expect = 4e-56
 Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 12/185 (6%)

Query: 14  HQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI- 72
            + +            KV +IGD   GK+ +L +     F      T G+   T+     
Sbjct: 27  EEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNI 86

Query: 73  -------NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE 125
                    K      WD  GQE   A    +   +   +++ D     +  +   W+  
Sbjct: 87  KGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRH 143

Query: 126 LRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
           +  +   S  +I++ NK D      +  +   E        F   S  NGD V++    L
Sbjct: 144 IEKYGGKSP-VIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202

Query: 186 LQEIY 190
              + 
Sbjct: 203 KSAVL 207

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  170 bits (432), Expect = 1e-53
 Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 13/183 (7%)

Query: 11  DHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTV 70
            H    +EN+     +   KV ++G+ + GKS ++ R+    +    +S  G  F  + +
Sbjct: 5   HHHSSGRENLYFQGPEL--KVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEI 60

Query: 71  TINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA 130
            ++G+     I D  G    +     +       V V+ +    SF  V  +   L +  
Sbjct: 61  VVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFR 115

Query: 131 DSS-IRIILIGNKSDL--VDMRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAFFRLL 186
           ++S + ++L+G +  +   + R +    A + + D     + E  A  G NV+  F  + 
Sbjct: 116 NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA 175

Query: 187 QEI 189
           Q++
Sbjct: 176 QKV 178

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  169 bits (430), Expect = 2e-53
 Identities = 36/177 (20%), Positives = 73/177 (41%), Gaps = 13/177 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            ++ V+GD+  GKS ++ RF    +    + T   ++  + + ++G+     I + AG  
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQY-KKEMLVDGQTHLVLIREEAGAP 65

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE---LRAHADSSIRIILIG--NKS 143
             +     +   A   + V+ +    SF  V+R   +   LR      + + L+G  ++ 
Sbjct: 66  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120

Query: 144 DLVDMRAVSAEDAVEF-AEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELE 199
                R V    A    A+ +   + E  A  G NVD  F  + Q++     +++L 
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLL 177

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  148 bits (375), Expect = 6e-45
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 6/171 (3%)

Query: 16  QQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK 75
                  +      K+VV+GD AVGK+ +L  F+K E       T+   F    +    +
Sbjct: 11  NTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNE 69

Query: 76  IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSI 134
                +WDTAGQE Y  +    Y  +   ++ + +  R SFD++  +W  E++ + D + 
Sbjct: 70  EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TA 128

Query: 135 RIILIGNKSDLVD--MRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
           + +L+G K DL       V+ ++  +  +  G   + EAS++    ++  F
Sbjct: 129 KTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  136 bits (344), Expect = 3e-40
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 18/192 (9%)

Query: 7   GDATDHRHQQQENMI--PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVE 64
           G +  H H     +           K+V++GD A GK+ +L  F+K++F      T+  E
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-E 60

Query: 65  FQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWV 123
                + ++GK ++  +WDTAGQE Y  +    Y      ++ + I    S +++  +W 
Sbjct: 61  NYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT 120

Query: 124 EELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGLF-FSEA 170
            E++     ++ IIL+GNK DL                 V +E+  + A     F + E 
Sbjct: 121 PEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179

Query: 171 SALNGDNVDTAF 182
           SA   + V   F
Sbjct: 180 SAKTKEGVREVF 191

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  134 bits (340), Expect = 6e-40
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 14/166 (8%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K V +GD AVGK+ +L  +T N F  D   T+   F    V +NG  +   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQE 67

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    YRGA   ++ + +  + S+++V+ +W+ EL+ +A   + I+L+G K DL D
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRD 126

Query: 148 ----------MRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                        ++     E  +  G   + E S+ + +NV   F
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  134 bits (340), Expect = 2e-39
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 16/168 (9%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            KVV++GD   GK+ +L  F    F      T+   +    + + GK +   IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +   +Y  A   ++ +D+T   SFD++  RW  E+       + II++G K+DL  
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRK 152

Query: 148 ------------MRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                       +  V+     E A   G   + E SA   DNV   F
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  134 bits (339), Expect = 2e-39
 Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 22/195 (11%)

Query: 2   NEEMSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTI 61
           +   SG      +   ++MI        K+VV+GD A GK+ +L  F+K+EF      T+
Sbjct: 5   HHHSSGVDLGTENLYFQSMIR------KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV 58

Query: 62  GVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-A 120
              +    + ++GK ++  +WDTAGQE Y  +    Y      ++ + +    S +++  
Sbjct: 59  FENYVAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPE 117

Query: 121 RWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGLF-F 167
           +WV E++     ++ IIL+ NK DL                 V  +D    A     + +
Sbjct: 118 KWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY 176

Query: 168 SEASALNGDNVDTAF 182
            E SA   + V   F
Sbjct: 177 LECSAKTKEGVREVF 191

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  131 bits (331), Expect = 2e-38
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 18/185 (9%)

Query: 12  HRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVT 71
            R    EN+         K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V 
Sbjct: 16  PRGSHMENLYFQGQA--IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVM 72

Query: 72  INGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHA 130
           ++GK +   +WDTAGQE Y  +    Y      ++ + +    SF++V A+W  E+R H 
Sbjct: 73  VDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 132

Query: 131 DSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGLF-FSEASALNGDN 177
             +  IIL+G K DL D            +  ++    +  A++ G   + E SAL    
Sbjct: 133 P-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 191

Query: 178 VDTAF 182
           + T F
Sbjct: 192 LKTVF 196

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  130 bits (330), Expect = 5e-38
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 12/179 (6%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K V +GD AVGK+ +L  +T N+F  D   T+  +  +  V ++G+I+   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    YRGA   V+ + +  + S+++V  +W+ ELR  A  ++ I+L+G K DL D
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRD 127

Query: 148 --------MRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEIYGAVSKKE 197
                      +++    E  +  G   + E S+    NV   F   ++ +     +KE
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 186

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  125 bits (315), Expect = 6e-36
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 23/192 (11%)

Query: 12  HRHQQQENMIP------DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEF 65
           H H     ++P         +   K+VV+GDS  GK+ +L  F K+ F  +   T+   +
Sbjct: 6   HHHHHSSGLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY 65

Query: 66  QTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVE 124
              +  I+ + I+  +WDT+G   Y  V    Y  +   ++ +DI++ ++ D V  +W  
Sbjct: 66  TA-SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKG 124

Query: 125 ELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGLF-FSEAS 171
           E++     + +++L+G KSDL                 VS +     A+  G   + E S
Sbjct: 125 EIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183

Query: 172 ALNG-DNVDTAF 182
           AL   ++V   F
Sbjct: 184 ALQSENSVRDIF 195

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  123 bits (311), Expect = 1e-35
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 16/167 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++GK +   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y     +++ + +    SF++V A+W  E+R H   +  IIL+G K DL D 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124

Query: 148 -----------MRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                      +  ++    +  A++ G   + E SAL    + T F
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  123 bits (311), Expect = 2e-35
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 16/180 (8%)

Query: 17  QENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI 76
           + +M       + K VV+GD AVGK+ +L  +  + F  +   T+  +    +VT+ GK 
Sbjct: 7   RSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQ 65

Query: 77  IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIR 135
               ++DTAGQE Y  +    Y      ++ + +    SF +V   WV EL+ +A  ++ 
Sbjct: 66  YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVP 124

Query: 136 IILIGNKSDLVD------------MRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
            +LIG + DL D             + +  E   + A++ G   + E SAL    + T F
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  123 bits (310), Expect = 2e-35
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 17/168 (10%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+VV+GDS  GK+ +L  F K+ F  +   T+   +   +  I+ + I+  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  V    Y  +   ++ +DI++ ++ D V  +W  E++     + +++L+G KSDL   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126

Query: 148 -----------MRAVSAEDAVEFAEDQGLF-FSEASALNG-DNVDTAF 182
                         VS +     A+  G   + E SAL   ++V   F
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  123 bits (309), Expect = 6e-35
 Identities = 38/185 (20%), Positives = 76/185 (41%), Gaps = 17/185 (9%)

Query: 13  RHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI 72
            +   +   P  +    K+V++GD   GK+ +L    K+ +      T+   +    +  
Sbjct: 12  ENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLET 70

Query: 73  NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHAD 131
             + ++  +WDT+G   Y  V    Y  +   ++ +DI++ ++ D    +W  E+  +  
Sbjct: 71  EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP 130

Query: 132 SSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGLF-FSEASALNG-DN 177
            S R++LIG K+DL                 +S E     A+  G   + E SA     +
Sbjct: 131 -STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKS 189

Query: 178 VDTAF 182
           + + F
Sbjct: 190 IHSIF 194

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  120 bits (303), Expect = 3e-34
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K V++GD AVGK+ ++  +T N +  +   T   +  +  V+++G+ ++ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVD- 147
           +  +    Y      ++ + +    SF +V  +WV E+R H      IIL+G +SDL + 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLRED 139

Query: 148 -----------MRAVSAEDAVEFAEDQGLF-FSEASALNGDNVDTAF 182
                       + V  E A   AE+     + E SAL   N+   F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  103 bits (257), Expect = 7e-27
 Identities = 45/252 (17%), Positives = 74/252 (29%), Gaps = 75/252 (29%)

Query: 12  HRHQQQENMIPDKIDYVFKVVVIGDSA---------VGKSQILSRFTK---NEFFFDSKS 59
           H H              + + V+G S          +GKS + +RF +   +EF  D  S
Sbjct: 3   HHHHHSSGRENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTS 62

Query: 60  TIG-VEFQTRTV--------------TINGKIIKAQIW-------DTAGQERYRAVTSAY 97
            +   +F  R V                +    K  I        D   Q         Y
Sbjct: 63  VLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPY 122

Query: 98  YRGAL-------------------------------------GAVVVYDITK--RQSFDH 118
            + A                                      G ++  D+++   ++FD 
Sbjct: 123 IKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDD 182

Query: 119 VARWVEELRAHADSS-IRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN 177
             ++V  L      +   I+++  K D    R +           + L   E SA +  N
Sbjct: 183 QLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHT-FALSKKNLQVVETSARSNVN 241

Query: 178 VDTAFFRLLQEI 189
           VD AF  L+Q I
Sbjct: 242 VDLAFSTLVQLI 253

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 92.4 bits (229), Expect = 2e-22
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 16/196 (8%)

Query: 1   MNEEMSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST 60
              + +        ++    I +    + K VV+GD AVGK+ +L  +T N F  +   T
Sbjct: 128 HVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT 187

Query: 61  IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV- 119
           +  +  +  V ++GK +   +WDTAG E Y  +    Y      ++ + +    SF HV 
Sbjct: 188 V-FDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVR 246

Query: 120 ARWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGLF- 166
           A+W  E+R H   +  IIL+G K DL D            +  ++    +  A++ G   
Sbjct: 247 AKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 305

Query: 167 FSEASALNGDNVDTAF 182
           + E SAL    + T F
Sbjct: 306 YLECSALTQRGLKTVF 321

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 87.5 bits (217), Expect = 1e-21
 Identities = 37/185 (20%), Positives = 60/185 (32%), Gaps = 19/185 (10%)

Query: 29  FKVVVIGDSAVGKSQIL---SRFTKNEFFFDSKS-------TIGVEFQTRTV-TINGKII 77
           FK+V  G    GK+  L             +  S       T+  +F    +  + G   
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 78  KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARW---VEELRAHADS-- 132
           +  ++   GQ  Y A      RG  G V V D    +   +        E L  +  +  
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 133 SIRIILIGNKSDLVDMRAVSAEDAVE-FAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
            + I++  NK DL D  A+  E        +      EA A  G  V      + + +  
Sbjct: 135 DVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192

Query: 192 AVSKK 196
            V+  
Sbjct: 193 RVAGG 197

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 70.3 bits (173), Expect = 3e-15
 Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 14/168 (8%)

Query: 29  FKVVVIG-DSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
            ++ ++G   + GK+  ++     +F  D   T+G  F  R +T     +  ++WD  GQ
Sbjct: 23  MELTLVGLQYS-GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQ 77

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLV 146
            R+R++   Y RG    V + D   ++  +     +  L          +L+ GNK DL 
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137

Query: 147 DMRAVSAEDAVEFAEDQGL-----FFSEASALNGDNVDTAFFRLLQEI 189
              A+  ++ +E      +          S    DN+D     L+Q  
Sbjct: 138 G--ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 67.3 bits (165), Expect = 4e-14
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 17/171 (9%)

Query: 29  FKVVVIG-DSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQTRTVTINGKIIKAQIWDTAG 86
             V+ +G D++ GK+ I+++   +     +   TIG  F       +   +   ++D +G
Sbjct: 22  VHVLCLGLDNS-GKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSG 76

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR--IILI-GNKS 143
           Q RYR +   YY+     + V D + R         ++ L  H D   R   IL   NK 
Sbjct: 77  QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136

Query: 144 DLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
           DL D  AV++    +        D+      + A+ G+ +      L  +I
Sbjct: 137 DLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 68.5 bits (167), Expect = 7e-14
 Identities = 29/187 (15%), Positives = 72/187 (38%), Gaps = 23/187 (12%)

Query: 30  KVVVIGDSAVGKS----QILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           K++++G S  GKS     I S ++  +      +TI VE            +   +WD  
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLG-ATIDVEHSHLR---FLGNMTLNLWDCG 60

Query: 86  GQERYRAVT-----SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS--IRIIL 138
           GQ+ +            ++     + V+D+   +    +  + + L+     S   +I +
Sbjct: 61  GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120

Query: 139 IGNKSDLV--DMRAVSAEDAVEFAED------QGLFFSEASALNGDNVDTAFFRLLQEIY 190
           + +K DLV  D R    +  ++   +              +++  +++  A+ +++  + 
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLI 180

Query: 191 GAVSKKE 197
             +S  +
Sbjct: 181 PNMSNHQ 187

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 66.9 bits (163), Expect = 8e-14
 Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 23/179 (12%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDS---KSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
           +++++G    GKS I           ++   +ST  +     + +     +  QIWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIWDFPG 78

Query: 87  QERYRAVTS---AYYRGALGAVVVYDITKR--QSFDHVARWVEELRAHADSSIRIILIGN 141
           Q  +   T      +RG    + V D      ++   +   V +     +  +   +  +
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIH 137

Query: 142 KSDLV--DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR---LLQEIYGAVSK 195
           K D +  D +  +  D  + A D      + +    + +  +F+        I+ A SK
Sbjct: 138 KVDGLSDDHKIETQRDIHQRAND------DLADAGLEKLHLSFYLTSIYDHSIFEAFSK 190

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 66.5 bits (163), Expect = 8e-14
 Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 13/167 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G    GK+ IL R    E    +K TIG  F   T++     +K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIG--FNVETLSYKN--LKLNVWDLGGQT 73

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVD 147
             R     YY      + V D T +      ++ +  +    +     +L+  NK D   
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133

Query: 148 MRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
             A+SA +  +        D+      +SA+ G+ +      L+  I
Sbjct: 134 --ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 38/194 (19%), Positives = 76/194 (39%), Gaps = 20/194 (10%)

Query: 9   ATDHRHQQQENMIP--DKIDYVF-----KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTI 61
           ++ H H     ++P       +F     +++++G  A GK+ IL +    E    +  TI
Sbjct: 3   SSHHHHHHSSGLVPRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTI 61

Query: 62  GVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR 121
           G  F   TV      I   +WD  GQ++ R +   Y++   G + V D   R+     A 
Sbjct: 62  G--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAD 117

Query: 122 WVEELRAHADSSIRIILI-GNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNG 175
            ++++    +    ++L+  NK D+ +  A+   +  +         +  +     A  G
Sbjct: 118 ELQKMLQEDELRDAVLLVFANKQDMPN--AMPVSELTDKLGLQHLRSRTWYVQATCATQG 175

Query: 176 DNVDTAFFRLLQEI 189
             +      L  E+
Sbjct: 176 TGLYDGLDWLSHEL 189

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 13/167 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G    GK+ IL R    E    +  TIG  F   TVT     +K Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKN--LKFQVWDLGGLT 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVD 147
             R     YY      + V D   R         +  +    +    I+++  NK D+  
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122

Query: 148 MRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
             A+++ +           D+     + SA  G  +D A   L++ +
Sbjct: 123 --AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 64.6 bits (158), Expect = 4e-13
 Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 15/168 (8%)

Query: 29  FKVVVIG-DSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
            +V+++G D+A GK+ IL R    +    +  T+G      T+      I  ++WD  GQ
Sbjct: 23  IRVLMLGLDNA-GKTSILYRLHLGDVV-TTVPTVG--VNLETLQYKN--ISFEVWDLGGQ 76

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLV 146
              R     Y+      + V D T R         +  L    +    ++LI  NK DL 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136

Query: 147 DMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
           D  A S  +  E        ++     ++S+  GD +      L++ +
Sbjct: 137 D--AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 64.2 bits (157), Expect = 6e-13
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 13/167 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G    GK+ IL +F   +       T+G  F  +T+   G   K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVD 147
             R+    Y+    G + V D   RQ      R ++ L      +   +LI  NK DL  
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133

Query: 148 MRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
             A+S     E  E              SA+ G+++      LL +I
Sbjct: 134 --ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 64.2 bits (157), Expect = 7e-13
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 13/167 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            KV+++G    GK+ IL +F+ NE    +  TIG       + IN    +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQE 71

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVD 147
             R+  + YY      +VV D T R+        + ++ AH D     +LI  NK D+ +
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131

Query: 148 MRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
              ++  +  +F +     D         AL G+ +      ++  +
Sbjct: 132 --CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 15/168 (8%)

Query: 29  FKVVVIG-DSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
            KV+++G D+A GK+ IL +F+ NE    +  TIG       + IN    +  +WD  GQ
Sbjct: 22  HKVIIVGLDNA-GKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQ 75

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLV 146
           E  R+  + YY      +VV D T R+        + ++ AH D     +LI  NK D+ 
Sbjct: 76  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135

Query: 147 DMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +   ++  +  +F +     D         AL G+ +      ++  +
Sbjct: 136 E--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 15/168 (8%)

Query: 29  FKVVVIG-DSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
            +++++G D+A GK+ +L +    +       T G  F  ++V   G   K  +WD  GQ
Sbjct: 17  VRILLLGLDNA-GKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQ 70

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLV 146
            + R    +Y+      + V D   R+ F+   + + EL      S   +LI  NK DL+
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 147 DMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
              A  A +  E        D+       SAL G+ V      + + +
Sbjct: 131 T--AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 61.4 bits (150), Expect = 3e-12
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 30  KVVVIG-DSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +++++G D+A GK+ IL +    E    +  TIG  F   TV      I   +WD  GQ+
Sbjct: 2   RILMVGLDAA-GKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ISFTVWDVGGQD 55

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI-GNKSDLVD 147
           + R +   Y++   G + V D   R+  +     +  + A  +    ++L+  NK DL +
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115

Query: 148 MRAVSAEDAVEFAEDQGL--------FFSEASALNGDNVDTAFFRLLQEI 189
                A +A E  +  GL        +     A +GD +      L  ++
Sbjct: 116 -----AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 28/177 (15%)

Query: 30  KVVVIG-DSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           K++ +G D+A GK+ +L     +      + T      +  + I    IK   +D  G  
Sbjct: 25  KLLFLGLDNA-GKTTLLHMLKNDRLA-TLQPTWH--PTSEELAIGN--IKFTTFDLGGHI 78

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAH-ADSSIR--IILI-GNKSD 144
           + R +   Y+    G V + D    + FD  AR   EL A    + ++    +I GNK D
Sbjct: 79  QARRLWKDYFPEVNGIVFLVDAADPERFD-EAR--VELDALFNIAELKDVPFVILGNKID 135

Query: 145 LVDMRAVSAEDAVE------------FAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             +  AVS  +                   + +     S +  +    AF  L Q I
Sbjct: 136 APN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 41/182 (22%), Positives = 64/182 (35%), Gaps = 33/182 (18%)

Query: 30  KVVVIG-DSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           K+V +G D+A GK+ +L    K++       T+     +  +TI G  +    +D  G  
Sbjct: 27  KLVFLGLDNA-GKTTLLHML-KDDRLGQHVPTLH--PTSEELTIAG--MTFTTFDLGGHI 80

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRA---HADSSIRIILI-GNKSD 144
           + R V   Y     G V + D    +     ++  EEL +       +   ILI GNK D
Sbjct: 81  QARRVWKNYLPAINGIVFLVDCADHERLL-ESK--EELDSLMTDETIANVPILILGNKID 137

Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEA-----------------SALNGDNVDTAFFRLLQ 187
             +  A+S E   E     G    +                  S L        F  + Q
Sbjct: 138 RPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195

Query: 188 EI 189
            I
Sbjct: 196 YI 197

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 15/134 (11%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQIWDTAGQE 88
            V+ +G    GK+ +  R    ++  D++++I     +    + N +     + D  G E
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYR-DTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 89  RYRA-VTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL------RAHADSSIRIILIGN 141
             R  +   +   A   V V D    Q         E L           +S  +++  N
Sbjct: 66  SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA--EFLYQVLIDSMALKNSPSLLIACN 123

Query: 142 KSDLVDMRAVSAED 155
           K D+    A SA+ 
Sbjct: 124 KQDIAM--AKSAKL 135

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 53.7 bits (129), Expect = 9e-09
 Identities = 38/194 (19%), Positives = 77/194 (39%), Gaps = 13/194 (6%)

Query: 2   NEEMSGDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTI 61
             E S +++  ++               +++++G  A GK+ IL +    E    +  TI
Sbjct: 139 GREWSLESSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTI 197

Query: 62  GVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR 121
           G  F   TV      I   +WD  GQ++ R +   Y++   G + V D   R+  +    
Sbjct: 198 G--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 253

Query: 122 WVEELRAHADSSIRIILI-GNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNG 175
            +  + A  +    ++L+  NK DL +  A++A +  +         +  +     A +G
Sbjct: 254 ELMRMLAEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSG 311

Query: 176 DNVDTAFFRLLQEI 189
           D +      L  ++
Sbjct: 312 DGLYEGLDWLSNQL 325

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 17/135 (12%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
            +++ G    GK+ +L+  T +     +  +            +       + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVR-PTVVSQE-----PLSAADYDGSGVTLVDFPGHVK 103

Query: 90  YRAVTSAYYRGALGAV--VVYDI---TKRQSFDHVARWVEELRAHADS----SIRIILIG 140
            R   S Y +     V  +++ +      +     A ++ ++ +  +S     I I++  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163

Query: 141 NKSDLVDMRAVSAED 155
           NKS+L    A     
Sbjct: 164 NKSELFT--ARPPSK 176

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 50.5 bits (121), Expect = 7e-08
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 31  VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY 90
           +++ G    GK+ +L+  T +      + T+    Q      +       + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSV----RPTVV--SQEPLSAADYDGSGVTLVDFPGHVKL 68

Query: 91  RAVTSAYYRGALGAV--VVYDI---TKRQSFDHVARWVEELRAHADS----SIRIILIGN 141
           R   S Y +     V  +++ +      +     A ++ ++ +  +S     I I++  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 142 KSDLVDMRAVSAED 155
           KS+L    A     
Sbjct: 129 KSELFT--ARPPSK 140

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 41/202 (20%), Positives = 79/202 (39%), Gaps = 25/202 (12%)

Query: 15  QQQENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-- 72
           ++    +P     +  VV+ G   VGKS +L   T  +    S       F TR + +  
Sbjct: 154 REVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASY-----PFTTRGINVGQ 208

Query: 73  -NGKIIKAQIWDTAG------QERYRAVTSAYYRGA-LGAVVVY--DITKRQSFDHVARW 122
                 + QI DT G       ER      A      LG +++Y  D ++      +   
Sbjct: 209 FEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSE-HCGFPLEEQ 267

Query: 123 VEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD- 179
           +            +  +++ NK D+ D   +  +   +F +++GL   + SAL G  +D 
Sbjct: 268 IHLFEEVHGEFKDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDL 325

Query: 180 --TAFFRLLQEIYGAVSKKELE 199
                 + L+ +   V+++++E
Sbjct: 326 VKEEIIKTLRPLAEKVAREKIE 347

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 26/175 (14%), Positives = 50/175 (28%), Gaps = 22/175 (12%)

Query: 7   GDATDHRHQQQENMIPDKIDYVFKVVVIGDSAVGKS----QILSRFTKNEFFFDSKSTIG 62
             AT  +  +    +  K      V+V+G   VGKS     ++                G
Sbjct: 15  PAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE---QVVRVSPFQAEG 71

Query: 63  VEFQTRTVTINGKIIKAQIWDTAG--------QERYRAVTSAYYRGALGAVVVYDITKRQ 114
           +     + T+ G  I   I DT G         +    +        +  ++  D     
Sbjct: 72  LRPVMVSRTMGGFTIN--IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY 129

Query: 115 SFD----HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL 165
           + D     V   + +     +   + +L+   +       +S E       D  L
Sbjct: 130 AVDELDKQVVIAITQTFGK-EIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLL 183

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 38.9 bits (90), Expect = 9e-04
 Identities = 18/133 (13%), Positives = 34/133 (25%), Gaps = 7/133 (5%)

Query: 18  ENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVT--INGK 75
            + + +    V  V V G++  GKS  ++         +  +  GV   T       +  
Sbjct: 59  SDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN 118

Query: 76  IIKAQIWDTAGQERYRAVTSAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSS 133
           I     WD  G          Y              I+  +   +     + +       
Sbjct: 119 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMK--- 175

Query: 134 IRIILIGNKSDLV 146
                +  K D  
Sbjct: 176 KEFYFVRTKVDSD 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.98
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.98
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.98
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.98
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.98
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.98
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.97
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.96
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.96
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.95
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.95
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.95
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.95
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.95
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.95
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.94
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.94
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.93
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.93
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.92
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.92
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.92
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.91
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.91
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.9
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.89
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.89
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.89
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.89
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.88
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.88
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.87
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.87
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.85
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.85
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.85
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.85
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.85
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.85
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.85
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.85
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.85
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.84
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.84
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.84
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.84
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.83
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.83
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.83
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.83
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.83
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.82
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.82
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.82
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.82
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.82
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.81
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.81
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.81
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.8
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.8
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.8
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.8
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.79
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.79
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.79
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.78
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.78
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.78
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.77
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.76
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.76
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.75
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.75
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.75
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.74
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.74
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.73
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.72
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.72
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.72
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.71
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.7
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.7
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.69
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.69
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.68
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.62
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.62
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.62
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.59
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.57
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.56
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.56
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.55
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.55
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.54
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.52
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.47
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.47
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.47
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.46
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.37
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.33
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.3
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.27
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.18
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.04
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.86
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.86
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.81
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.81
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.74
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.71
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.71
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.68
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.67
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.46
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.46
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.4
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.2
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.17
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.14
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.13
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.06
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.98
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.98
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.77
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.71
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.63
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.62
2xxa_A	433	Signal recognition particle protein; protein trans	97.27
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.16
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.07
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.06
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.04
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.03
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.97
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.93
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.89
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.87
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.86
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.86
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.81
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.78
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.75
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.72
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.71
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.68
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.68
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.66
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.66
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.63
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.63
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.62
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.61
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.61
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.6
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.6
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.57
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.56
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.56
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.56
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.54
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.54
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.54
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.51
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.5
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.5
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.48
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.48
1g6h_A	257	High-affinity branched-chain amino acid transport	96.46
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.45
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.45
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.44
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.44
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.43
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.43
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.43
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.42
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.41
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.4
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.4
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.4
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.39
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.38
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.38
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.38
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.37
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.36
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.36
3co5_A	143	Putative two-component system transcriptional RES	96.35
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.35
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.34
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.34
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.34
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.33
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.33
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.33
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.32
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.32
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.31
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.3
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.3
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.3
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.29
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.28
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.28
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.28
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.28
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.27
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.26
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.25
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.25
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.22
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.22
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.21
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.21
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.2
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.18
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.17
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.16
1via_A	175	Shikimate kinase; structural genomics, transferase	96.16
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.16
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.16
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.15
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.12
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.12
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.12
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.11
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.1
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.1
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.07
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.07
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.06
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.05
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.04
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.04
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.03
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.03
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.01
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.01
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.0
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.99
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.99
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.98
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.97
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.96
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.95
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.95
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.94
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.93
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.93
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.93
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.91
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.9
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.9
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.88
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.88
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.87
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.87
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.87
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.87
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.86
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.86
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.85
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.84
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.83
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.83
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.82
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.81
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.8
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.79
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.79
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.79
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.78
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.78
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.77
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.76
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.73
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.73
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.72
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.71
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.7
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.7
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.68
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.67
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.66
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.65
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.64
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.64
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.64
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.63
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.61
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.61
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.59
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.58
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.57
3bos_A	242	Putative DNA replication factor; P-loop containing	95.55
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.54
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.44
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.42
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.42
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.41
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.4
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.39
3uc9_A	233	Increased recombination centers protein 6; rossman	95.38
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.37
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.35
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.35
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.35
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.35
2og2_A	359	Putative signal recognition particle receptor; nuc	95.34
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.32
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.32
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.29
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.24
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.24
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.22
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.18
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.15
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.12
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.08
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.07
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.07
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.06
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.04
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.01
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	94.96
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.96
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.96
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.9
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.9
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	94.89
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.86
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.83
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	94.81
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.8
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.79
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.78
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.69
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.67
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.62
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.59
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.59
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.59
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.58
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.58
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.58
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.57
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.56
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.54
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.48
3cwq_A	209	Para family chromosome partitioning protein; alpha	94.47
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.46
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.46
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.45
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.44
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.44
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.41
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.38
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.38
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.37
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	94.29
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.28
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.28
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.25
2qgz_A	308	Helicase loader, putative primosome component; str	94.24
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.16
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	94.14
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.12
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.11
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.1
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.1
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.05
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.03
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.03
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.02
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.02
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.01
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	93.99
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	93.98
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	93.96
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	93.93
2r44_A	331	Uncharacterized protein; putative ATPase, structur	93.9
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	93.87
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	93.86
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	93.85
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	93.78
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	93.75
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	93.73
3end_A	307	Light-independent protochlorophyllide reductase ir	93.72
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	93.71
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	93.71

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=3.4e-40  Score=259.69  Aligned_cols=167  Identities=38%  Similarity=0.686  Sum_probs=146.5

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +.+||+|+|++|+|||||+++|+.+.+...+.+|++.++..+.+.+++..+.+.||||+|+++|..++..+++.+|++|+
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il   91 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV   91 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++.++++.++++|++|||++|.||+++|+.|+
T Consensus        92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~  171 (216)
T 4dkx_A           92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  171 (216)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999999888778899999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 026548          187 QEIYGAV  193 (237)
Q Consensus       187 ~~i~~~~  193 (237)
                      +.+....
T Consensus       172 ~~i~~~~  178 (216)
T 4dkx_A          172 AALPGME  178 (216)
T ss_dssp             HHC----
T ss_pred             HHHHhhh
Confidence            8876543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-36  Score=235.81  Aligned_cols=177  Identities=60%  Similarity=0.970  Sum_probs=148.9

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      ..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|+
T Consensus         9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (223)
T 3cpj_B            9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG   88 (223)
T ss_dssp             -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred             CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence            34678999999999999999999999999888888888888888888899988899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      +|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...+++++++||+++.|++++|+
T Consensus        89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  168 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE  168 (223)
T ss_dssp             EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887666899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccccc
Q 026548          184 RLLQEIYGAVSKKELEC  200 (237)
Q Consensus       184 ~l~~~i~~~~~~~~~~~  200 (237)
                      +|++.+.++..+.+...
T Consensus       169 ~l~~~i~~~~~~~~~~~  185 (223)
T 3cpj_B          169 ELINTIYQKVSKHQMDL  185 (223)
T ss_dssp             HHHHHHTTCC-------
T ss_pred             HHHHHHHHHhhhcccCc
Confidence            99999998887766544

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=2.5e-34  Score=224.41  Aligned_cols=174  Identities=46%  Similarity=0.801  Sum_probs=160.3

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            45689999999999999999999999998888888988888888889999889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |+|||++++.++..+..|+..+......++|++||+||+|+...+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  164 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  164 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998877678999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccc
Q 026548          185 LLQEIYGAVSKKEL  198 (237)
Q Consensus       185 l~~~i~~~~~~~~~  198 (237)
                      |.+.+.+.......
T Consensus       165 l~~~i~~~~~~~~~  178 (206)
T 2bcg_Y          165 MARQIKESMSQQNL  178 (206)
T ss_dssp             HHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHhhccc
Confidence            99999888765543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=223.99  Aligned_cols=168  Identities=35%  Similarity=0.546  Sum_probs=150.9

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++|
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            4578999999999999999999999988777777766554 456778888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      +|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++.+++..++++++++||++|.|++++|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  170 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  170 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999887654 58999999999999877778889999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 026548          185 LLQEIYGAVS  194 (237)
Q Consensus       185 l~~~i~~~~~  194 (237)
                      |++.+.++..
T Consensus       171 l~~~i~~~~~  180 (206)
T 2bov_A          171 LMREIRARKM  180 (206)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHccc
Confidence            9999987643

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=216.40  Aligned_cols=174  Identities=45%  Similarity=0.782  Sum_probs=160.2

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|
T Consensus        11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (196)
T 3tkl_A           11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   90 (196)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence            34467899999999999999999999999988888899999999999999998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      ++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..++..+++..++++++++||+++.|++++|
T Consensus        91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  170 (196)
T 3tkl_A           91 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF  170 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988877789999999999998888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcc
Q 026548          183 FRLLQEIYGAVSKK  196 (237)
Q Consensus       183 ~~l~~~i~~~~~~~  196 (237)
                      ++|.+.+.++....
T Consensus       171 ~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          171 MTMAAEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhccc
Confidence            99999998876644

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=2.2e-33  Score=216.20  Aligned_cols=177  Identities=44%  Similarity=0.739  Sum_probs=160.0

Q ss_pred             cccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhh
Q 026548           18 ENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAY   97 (237)
Q Consensus        18 ~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   97 (237)
                      ....+...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+...+..+
T Consensus        12 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   91 (189)
T 2gf9_A           12 SGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAY   91 (189)
T ss_dssp             --CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGG
T ss_pred             cCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHh
Confidence            34555667789999999999999999999999999888778888888888888888888999999999999999999999


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548           98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN  177 (237)
Q Consensus        98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  177 (237)
                      ++.+|++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++..++++++++||++|.|
T Consensus        92 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  171 (189)
T 2gf9_A           92 YRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN  171 (189)
T ss_dssp             GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            99999999999999999999999999998887666899999999999987777888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 026548          178 VDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       178 i~~~~~~l~~~i~~~~~  194 (237)
                      ++++|++|.+.+.+++.
T Consensus       172 i~~l~~~l~~~i~~~~~  188 (189)
T 2gf9_A          172 VKQVFERLVDVICEKMN  188 (189)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999887653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=217.13  Aligned_cols=177  Identities=56%  Similarity=0.912  Sum_probs=159.5

Q ss_pred             ccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhh
Q 026548           19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYY   98 (237)
Q Consensus        19 ~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   98 (237)
                      .+.....+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||.+.+..++..++
T Consensus        16 ~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   95 (193)
T 2oil_A           16 PRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYY   95 (193)
T ss_dssp             ----CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHH
T ss_pred             cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHh
Confidence            34446677889999999999999999999999998888888888888888888898889999999999999999999999


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                      +.+|++|+|||++++.++..+..|+..+......++|++||+||+|+...+.+..+++.+++...+++++++||+++.|+
T Consensus        96 ~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  175 (193)
T 2oil_A           96 RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNV  175 (193)
T ss_dssp             TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999999999999988776678999999999999877778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 026548          179 DTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       179 ~~~~~~l~~~i~~~~~~  195 (237)
                      +++|++|.+.+.++..+
T Consensus       176 ~~l~~~l~~~i~~~~~~  192 (193)
T 2oil_A          176 ELAFETVLKEIFAKVSK  192 (193)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999887654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-33  Score=219.92  Aligned_cols=174  Identities=41%  Similarity=0.728  Sum_probs=158.9

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ...+..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|
T Consensus        21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (201)
T 2ew1_A           21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN  100 (201)
T ss_dssp             -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence            45677899999999999999999999999988888899999998889999998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      ++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...++++++|||++|.|++++|
T Consensus       101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  180 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF  180 (201)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988766789999999999998777888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcc
Q 026548          183 FRLLQEIYGAVSKK  196 (237)
Q Consensus       183 ~~l~~~i~~~~~~~  196 (237)
                      ++|++.+.++....
T Consensus       181 ~~l~~~i~~~~~~~  194 (201)
T 2ew1_A          181 LDLACRLISEARQN  194 (201)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999998876543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=2.2e-33  Score=216.62  Aligned_cols=177  Identities=48%  Similarity=0.810  Sum_probs=157.3

Q ss_pred             ccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhh
Q 026548           19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYY   98 (237)
Q Consensus        19 ~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   98 (237)
                      ...+....+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..++
T Consensus        12 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   91 (191)
T 2a5j_A           12 SGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY   91 (191)
T ss_dssp             CCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH
T ss_pred             cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHh
Confidence            34445667789999999999999999999999998887778888888888888999889999999999999999999999


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                      +.+|++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...+++++++||+++.|+
T Consensus        92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi  171 (191)
T 2a5j_A           92 RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV  171 (191)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999999999999998876678999999999999877788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 026548          179 DTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       179 ~~~~~~l~~~i~~~~~~  195 (237)
                      +++|++|++.+.++..+
T Consensus       172 ~~l~~~l~~~i~~~~~~  188 (191)
T 2a5j_A          172 EEAFINTAKEIYRKIQQ  188 (191)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999887654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=3.4e-34  Score=219.38  Aligned_cols=173  Identities=46%  Similarity=0.807  Sum_probs=129.4

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            45689999999999999999999999888777778888888888888899889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++.+++..++++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988876668999999999999877778889999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccc
Q 026548          185 LLQEIYGAVSKKE  197 (237)
Q Consensus       185 l~~~i~~~~~~~~  197 (237)
                      |.+.+.++..+..
T Consensus       165 l~~~i~~~~~~~~  177 (183)
T 2fu5_C          165 LARDIKAKMDKNW  177 (183)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhccc
Confidence            9999988776543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=219.52  Aligned_cols=174  Identities=45%  Similarity=0.739  Sum_probs=148.2

Q ss_pred             cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR   99 (237)
Q Consensus        20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   99 (237)
                      ..+...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++
T Consensus        21 ~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~  100 (201)
T 2hup_A           21 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR  100 (201)
T ss_dssp             -----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT
T ss_pred             CcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh
Confidence            34456678899999999999999999999999988777788888888888889998899999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNV  178 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi  178 (237)
                      .+|++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...++ ++++|||+++.|+
T Consensus       101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  180 (201)
T 2hup_A          101 SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV  180 (201)
T ss_dssp             TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred             hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence            999999999999999999999999998887667899999999999987777888999999999999 8999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 026548          179 DTAFFRLLQEIYGAV  193 (237)
Q Consensus       179 ~~~~~~l~~~i~~~~  193 (237)
                      +++|++|++.+.++.
T Consensus       181 ~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          181 EEAFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.8e-33  Score=214.65  Aligned_cols=174  Identities=45%  Similarity=0.787  Sum_probs=160.1

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      ..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            45678999999999999999999999999888888888888888888899988899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      +|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...+++++++||+++.|++++|+
T Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  165 (186)
T 2bme_A           86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  165 (186)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            99999999999999999999998887667899999999999987777888899999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccc
Q 026548          184 RLLQEIYGAVSKKE  197 (237)
Q Consensus       184 ~l~~~i~~~~~~~~  197 (237)
                      ++.+.+.++....+
T Consensus       166 ~l~~~~~~~~~~~~  179 (186)
T 2bme_A          166 QCARKILNKIESGE  179 (186)
T ss_dssp             HHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhhhcC
Confidence            99999998876544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=4.9e-33  Score=211.64  Aligned_cols=169  Identities=51%  Similarity=0.883  Sum_probs=154.8

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            45567899999999999999999999999988778888888888888889998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      ++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++..++++++++||+++.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  169 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999888776789999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 026548          183 FRLLQEIYG  191 (237)
Q Consensus       183 ~~l~~~i~~  191 (237)
                      ++|++.+.+
T Consensus       170 ~~l~~~i~~  178 (179)
T 1z0f_A          170 LEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHhh
Confidence            999988754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=216.95  Aligned_cols=175  Identities=41%  Similarity=0.743  Sum_probs=149.2

Q ss_pred             cccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhh
Q 026548           18 ENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAY   97 (237)
Q Consensus        18 ~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   97 (237)
                      ....+.+.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+
T Consensus        16 ~~~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~   95 (192)
T 2il1_A           16 PRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY   95 (192)
T ss_dssp             ------CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHH
T ss_pred             CCCCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHH
Confidence            34455677789999999999999999999999999888888888888888889999988999999999999999999999


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc-CCeEEEEcCCCCC
Q 026548           98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ-GLFFSEASALNGD  176 (237)
Q Consensus        98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~  176 (237)
                      ++.+|++|+|||++++.+++.+..|+..+......++|++||+||+|+...+++..+++.+++... +++++++||++|.
T Consensus        96 ~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  175 (192)
T 2il1_A           96 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF  175 (192)
T ss_dssp             HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            999999999999999999999999999988877678999999999999877788888888998885 7899999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q 026548          177 NVDTAFFRLLQEIYGA  192 (237)
Q Consensus       177 gi~~~~~~l~~~i~~~  192 (237)
                      |++++|++|.+.+.++
T Consensus       176 gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          176 NVDEIFLKLVDDILKK  191 (192)
T ss_dssp             SHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988765

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.6e-33  Score=217.95  Aligned_cols=178  Identities=46%  Similarity=0.764  Sum_probs=149.1

Q ss_pred             cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR   99 (237)
Q Consensus        20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   99 (237)
                      ......+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++
T Consensus        17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   96 (200)
T 2o52_A           17 RGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYR   96 (200)
T ss_dssp             -----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhc
Confidence            34455678899999999999999999999999988888888888888888889998899999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      .+|++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...++++++|||++|.|++
T Consensus        97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~  176 (200)
T 2o52_A           97 GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE  176 (200)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999999887766789999999999998777788888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccc
Q 026548          180 TAFFRLLQEIYGAVSKKE  197 (237)
Q Consensus       180 ~~~~~l~~~i~~~~~~~~  197 (237)
                      ++|++|++.+.++....+
T Consensus       177 ~l~~~l~~~i~~~~~~~~  194 (200)
T 2o52_A          177 EAFLKCARTILNKIDSGE  194 (200)
T ss_dssp             HHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            999999999988776543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=214.48  Aligned_cols=173  Identities=42%  Similarity=0.732  Sum_probs=159.2

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      ..+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            34578999999999999999999999999888888888888888888889988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      +|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++..++++++++||++|.|++++|+
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  163 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999998887666899999999999987778888899999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcc
Q 026548          184 RLLQEIYGAVSKK  196 (237)
Q Consensus       184 ~l~~~i~~~~~~~  196 (237)
                      +|.+.+.+++...
T Consensus       164 ~l~~~i~~~~~~~  176 (203)
T 1zbd_A          164 RLVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998887654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=209.39  Aligned_cols=171  Identities=45%  Similarity=0.729  Sum_probs=154.9

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      ..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            44578999999999999999999999999888888999999998999999988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      +|+|||++++.++..+..|+..+.... .++|++||+||+|+...+.+..++..+++...+++++++||++|.|++++|+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999999999987765 5799999999999988778888899999999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 026548          184 RLLQEIYGAVSK  195 (237)
Q Consensus       184 ~l~~~i~~~~~~  195 (237)
                      +|.+.+.+....
T Consensus       164 ~l~~~~~~~~~~  175 (181)
T 3tw8_B          164 CITELVLRAKKD  175 (181)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhh
Confidence            999998876654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.6e-32  Score=209.41  Aligned_cols=169  Identities=41%  Similarity=0.746  Sum_probs=152.8

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      .....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            34567999999999999999999999999888888888888888888899888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      +|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...+++++++||++|.|++++|+
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887667899999999999987778888899999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 026548          184 RLLQEIYGA  192 (237)
Q Consensus       184 ~l~~~i~~~  192 (237)
                      +|.+.+.+.
T Consensus       168 ~l~~~~~~~  176 (181)
T 2efe_B          168 EIARRLPRV  176 (181)
T ss_dssp             HHHHTCC--
T ss_pred             HHHHHHHhc
Confidence            998876543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=6e-33  Score=209.61  Aligned_cols=167  Identities=38%  Similarity=0.671  Sum_probs=145.7

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            35679999999999999999999999998887888888888888888888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999887765567999999999999877788888999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 026548          185 LLQEIYG  191 (237)
Q Consensus       185 l~~~i~~  191 (237)
                      |.+.+.+
T Consensus       163 l~~~~~~  169 (170)
T 1z08_A          163 LCKRMIE  169 (170)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.4e-32  Score=209.00  Aligned_cols=169  Identities=32%  Similarity=0.484  Sum_probs=152.4

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            3445689999999999999999999999988888888877666 677788998889999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCC-CCCCHHH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASAL-NGDNVDT  180 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~  180 (237)
                      ++|+|||++++.+++.+..|+..+..... .++|++||+||+|+.+.+.+..+++.+++..++++++++||+ ++.|+++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~  171 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  171 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence            99999999999999999999998866433 689999999999998888889999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHHh
Q 026548          181 AFFRLLQEIYGA  192 (237)
Q Consensus       181 ~~~~l~~~i~~~  192 (237)
                      +|++|.+.+.++
T Consensus       172 l~~~l~~~i~~q  183 (183)
T 3kkq_A          172 TFHDLVRVIRQQ  183 (183)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhC
Confidence            999999988753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=1.9e-32  Score=210.99  Aligned_cols=177  Identities=40%  Similarity=0.668  Sum_probs=155.8

Q ss_pred             cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEE-EEEEEECCE---------EEEEEEEeCCCcch
Q 026548           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQ-TRTVTINGK---------IIKAQIWDTAGQER   89 (237)
Q Consensus        20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~   89 (237)
                      |.....+..++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+..++.         .+.+.||||||++.
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            33445677899999999999999999999999888777788888777 556666654         67899999999999


Q ss_pred             hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEE
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFS  168 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  168 (237)
                      +...+..+++.+|++|+|||++++.++..+..|+..+..... .++|++||+||+|+...+.+..+++.+++...+++++
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF  162 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence            999999999999999999999999999999999999887765 6899999999999987777888899999999999999


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 026548          169 EASALNGDNVDTAFFRLLQEIYGAVSKK  196 (237)
Q Consensus       169 ~~Sa~~~~gi~~~~~~l~~~i~~~~~~~  196 (237)
                      ++||+++.|++++|++|.+.+.++..+.
T Consensus       163 ~~Sa~~~~~v~~l~~~l~~~~~~~~~~~  190 (195)
T 3bc1_A          163 ETSAANGTNISHAIEMLLDLIMKRMERS  190 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999998876643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.4e-32  Score=207.29  Aligned_cols=164  Identities=45%  Similarity=0.746  Sum_probs=151.2

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            35789999999999999999999999988888888888888888888988899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999888766789999999999998777788889999999999999999999999999999999


Q ss_pred             HHHH
Q 026548          186 LQEI  189 (237)
Q Consensus       186 ~~~i  189 (237)
                      .+.+
T Consensus       164 ~~~~  167 (170)
T 1r2q_A          164 AKKL  167 (170)
T ss_dssp             HHTS
T ss_pred             HHHH
Confidence            8765

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.8e-34  Score=219.20  Aligned_cols=173  Identities=42%  Similarity=0.721  Sum_probs=157.9

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  101 (237)
                      +...+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+
T Consensus        17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (191)
T 3dz8_A           17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA   96 (191)
T ss_dssp             TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred             ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence            34567789999999999999999999999988777777878888888888877778899999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      |++|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+....++...++..++++++++||++|.|++++
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  176 (191)
T 3dz8_A           97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA  176 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999999998877678999999999999887888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 026548          182 FFRLLQEIYGAVS  194 (237)
Q Consensus       182 ~~~l~~~i~~~~~  194 (237)
                      |++|++.+.++..
T Consensus       177 ~~~l~~~i~~~~~  189 (191)
T 3dz8_A          177 FERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999987765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.2e-33  Score=216.83  Aligned_cols=177  Identities=27%  Similarity=0.408  Sum_probs=145.5

Q ss_pred             cccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhh
Q 026548           18 ENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAY   97 (237)
Q Consensus        18 ~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   97 (237)
                      ......+....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+
T Consensus        14 ~~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   92 (201)
T 3oes_A           14 LYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSF   92 (201)
T ss_dssp             ---------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGG
T ss_pred             CCCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHH
Confidence            344445667789999999999999999999999998888878877666 5566666777889999999999999999999


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548           98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD  176 (237)
Q Consensus        98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  176 (237)
                      ++.+|++|+|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++.+++..++++++++||++|.
T Consensus        93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  172 (201)
T 3oes_A           93 IIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQ  172 (201)
T ss_dssp             TTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHH
T ss_pred             HhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCC
Confidence            9999999999999999999999999999877643 579999999999998888888899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhc
Q 026548          177 NVDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       177 gi~~~~~~l~~~i~~~~~~  195 (237)
                      |++++|++|.+.+.+....
T Consensus       173 ~v~~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          173 LTQGIFTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHHHHhhhhh
Confidence            9999999999998776543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=213.47  Aligned_cols=174  Identities=24%  Similarity=0.290  Sum_probs=146.5

Q ss_pred             cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-hhHhhh
Q 026548           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-VTSAYY   98 (237)
Q Consensus        20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~   98 (237)
                      +.+......++|+|+|++|+|||||+++|.+........++.+.++....+.+++..+.+.+|||+|++.+.. ++..++
T Consensus        15 ~~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~   94 (195)
T 3cbq_A           15 YFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCL   94 (195)
T ss_dssp             -------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHH
T ss_pred             cCCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhh
Confidence            3445566789999999999999999999986654444445666667777788899999999999999988765 778889


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN  177 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  177 (237)
                      +.+|++|+|||++++.++..+..|+..+..... .++|++||+||+|+...+.+..+++.+++..+++++++|||+++.|
T Consensus        95 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~  174 (195)
T 3cbq_A           95 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN  174 (195)
T ss_dssp             HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCC
Confidence            999999999999999999999999999877654 5799999999999987778888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 026548          178 VDTAFFRLLQEIYGAV  193 (237)
Q Consensus       178 i~~~~~~l~~~i~~~~  193 (237)
                      ++++|++|++.+.++.
T Consensus       175 v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          175 TRELFEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999886543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1.2e-32  Score=207.74  Aligned_cols=167  Identities=45%  Similarity=0.823  Sum_probs=145.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999999887777888888888888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |||++++.+++.+..|+..+......++|+++|+||+|+ ..+....++..+++...+++++++||++|.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999988877678999999999999 4456678888999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 026548          187 QEIYGAVS  194 (237)
Q Consensus       187 ~~i~~~~~  194 (237)
                      +.+.++..
T Consensus       161 ~~~~~~~~  168 (170)
T 1g16_A          161 KLIQEKID  168 (170)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHHHhh
Confidence            99887643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=8.4e-33  Score=215.62  Aligned_cols=172  Identities=32%  Similarity=0.601  Sum_probs=151.8

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      ....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            34578999999999999999999999998888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-HcCCeEEEEcCCCCCCHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-DQGLFFSEASALNGDNVD  179 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~  179 (237)
                      |+|||++++.++..+..|+..+.....    .++|++||+||+|+. .+....+++.+++. ..+++++++||++|.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999998876543    478999999999997 45667788888887 667899999999999999


Q ss_pred             HHHHHHHHHHHHhhhccc
Q 026548          180 TAFFRLLQEIYGAVSKKE  197 (237)
Q Consensus       180 ~~~~~l~~~i~~~~~~~~  197 (237)
                      ++|++|.+.+.++....+
T Consensus       164 ~l~~~l~~~~~~~~~~~~  181 (207)
T 1vg8_A          164 QAFQTIARNALKQETEVE  181 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccc
Confidence            999999999988766443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-32  Score=206.72  Aligned_cols=163  Identities=45%  Similarity=0.748  Sum_probs=149.8

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            36899999999999999999999999888888888888888888899988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---cCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM---RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      |||++++.+++.+..|+..+......++|+++|+||+|+...   +++..++..+++...+++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999988876678999999999998765   56778889999999999999999999999999999


Q ss_pred             HHHHHH
Q 026548          184 RLLQEI  189 (237)
Q Consensus       184 ~l~~~i  189 (237)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            988765

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.8e-32  Score=207.18  Aligned_cols=170  Identities=41%  Similarity=0.711  Sum_probs=145.4

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ..+..++|+|+|++|+|||||+++|.+..+.. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            34568999999999999999999999988753 56688888888888888998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      ++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..++..+++...+++++++||+++.|++++|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  165 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999888766789999999999998777788888999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 026548          183 FRLLQEIYGAV  193 (237)
Q Consensus       183 ~~l~~~i~~~~  193 (237)
                      ++|.+.+.++.
T Consensus       166 ~~l~~~~~~~~  176 (180)
T 2g6b_A          166 TAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHh
Confidence            99999886543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=6.5e-32  Score=203.76  Aligned_cols=164  Identities=42%  Similarity=0.705  Sum_probs=152.0

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      .+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||.+.+...+..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45799999999999999999999999988888888888888888889998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|||++++.+++.+..|+..+.......+|+++|+||+|+...+++..++..+++...+++++++||+++.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988766789999999999998777788889999999999999999999999999999999


Q ss_pred             HHHH
Q 026548          186 LQEI  189 (237)
Q Consensus       186 ~~~i  189 (237)
                      .+.+
T Consensus       164 ~~~i  167 (170)
T 1z0j_A          164 SRRI  167 (170)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=3.1e-32  Score=208.11  Aligned_cols=168  Identities=30%  Similarity=0.407  Sum_probs=150.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4578999999999999999999998888888888887776 677788998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      +|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++.+++..++++++++||+++.|++++|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999998876654 57999999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 026548          185 LLQEIYGAVS  194 (237)
Q Consensus       185 l~~~i~~~~~  194 (237)
                      |++.+.+...
T Consensus       163 l~~~~~~~~~  172 (181)
T 3t5g_A          163 IILEAEKMDG  172 (181)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHHhcC
Confidence            9998876643

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=212.90  Aligned_cols=172  Identities=41%  Similarity=0.661  Sum_probs=152.2

Q ss_pred             ccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhh
Q 026548           19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYY   98 (237)
Q Consensus        19 ~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   98 (237)
                      ..++...+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..++
T Consensus        14 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   93 (192)
T 2fg5_A           14 LVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYY   93 (192)
T ss_dssp             -------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHH
T ss_pred             cccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhh
Confidence            34455667889999999999999999999999998877888888888888888887788999999999999999999999


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                      +.+|++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++...++++++|||+++.|+
T Consensus        94 ~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi  173 (192)
T 2fg5_A           94 RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINI  173 (192)
T ss_dssp             TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSH
T ss_pred             ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence            99999999999999999999999999998876668999999999999876778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 026548          179 DTAFFRLLQEIY  190 (237)
Q Consensus       179 ~~~~~~l~~~i~  190 (237)
                      +++|++|.+.+.
T Consensus       174 ~~l~~~l~~~i~  185 (192)
T 2fg5_A          174 EELFQGISRQIP  185 (192)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999987664

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2.2e-32  Score=205.97  Aligned_cols=165  Identities=38%  Similarity=0.615  Sum_probs=151.6

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      +..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45789999999999999999999999888888888888888888889998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+.+..+++.+++...+++++++||+++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999999887765 579999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 026548          186 LQEIYG  191 (237)
Q Consensus       186 ~~~i~~  191 (237)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998865

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=9.4e-32  Score=204.89  Aligned_cols=170  Identities=31%  Similarity=0.470  Sum_probs=151.3

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      +....++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            3456799999999999999999999999888777788776665 667788888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAH-ADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      +++|||++++.++..+..|+..+... ...++|++||+||+|+...+.+..+++.+++...+++++++||++|.|++++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            99999999999999999999988544 34689999999999998777888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 026548          183 FRLLQEIYGAVS  194 (237)
Q Consensus       183 ~~l~~~i~~~~~  194 (237)
                      ++|.+.+.+...
T Consensus       164 ~~l~~~~~~~~~  175 (181)
T 2fn4_A          164 EQLVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhc
Confidence            999998876543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=1.1e-32  Score=216.88  Aligned_cols=178  Identities=39%  Similarity=0.663  Sum_probs=153.1

Q ss_pred             cccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCE----------EEEEEEEeCCCc
Q 026548           18 ENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK----------IIKAQIWDTAGQ   87 (237)
Q Consensus        18 ~~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~   87 (237)
                      .+......++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++.          .+.+.||||||+
T Consensus        15 ~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~   94 (217)
T 2f7s_A           15 VPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ   94 (217)
T ss_dssp             ------CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred             CcCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence            3445566788999999999999999999999999887666677777777777777665          688999999999


Q ss_pred             chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe
Q 026548           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF  166 (237)
Q Consensus        88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~  166 (237)
                      +.+...+..+++.+|++|+|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++.+++...+++
T Consensus        95 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~  174 (217)
T 2f7s_A           95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP  174 (217)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC
T ss_pred             HhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc
Confidence            99999999999999999999999999999999999888765543 57999999999999877778888999999999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q 026548          167 FSEASALNGDNVDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       167 ~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~  195 (237)
                      +++|||+++.|++++|++|.+.+.++...
T Consensus       175 ~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~  203 (217)
T 2f7s_A          175 YFETSAATGQNVEKAVETLLDLIMKRMEQ  203 (217)
T ss_dssp             EEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999887654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=4.3e-32  Score=204.81  Aligned_cols=165  Identities=25%  Similarity=0.314  Sum_probs=135.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-hhHhhhcCCcEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-VTSAYYRGALGAVV  106 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~il  106 (237)
                      .+||+|+|++|+|||||+++|.+......+.++.+.+.....+.+++..+.+.+|||||++.+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998887776666677778888888999999999999999998876 67778899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      |||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..++..+++...+++++++||+++.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999999887664 479999999999998778889999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 026548          186 LQEIYGA  192 (237)
Q Consensus       186 ~~~i~~~  192 (237)
                      ++.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=9.8e-32  Score=203.85  Aligned_cols=167  Identities=28%  Similarity=0.364  Sum_probs=137.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch--hchhhHhhhcCCcEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER--YRAVTSAYYRGALGA  104 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~~  104 (237)
                      ..++|+|+|++|+|||||+++|.+..+...+ ++.+.++....+.+++..+.+.+|||||++.  +..+...+++.+|++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            4689999999999999999999998876554 4556667777888899888999999999887  566777888999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      ++|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..++...++..+++++++|||++|.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE  161 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            999999999999999999998877532 5799999999999987778888888899999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 026548          184 RLLQEIYGAVS  194 (237)
Q Consensus       184 ~l~~~i~~~~~  194 (237)
                      +|.+.+.++..
T Consensus       162 ~l~~~~~~~~~  172 (175)
T 2nzj_A          162 GVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhc
Confidence            99998876543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=4.1e-32  Score=209.02  Aligned_cols=167  Identities=27%  Similarity=0.422  Sum_probs=143.3

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ......+||+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.||||||++.+..+ ..+++.+|
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            3445679999999999999999999999998887878877665 456777888899999999999988875 67899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcC-CCCCCH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA-LNGDNV  178 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi  178 (237)
                      ++|+|||++++.+++.+..|+..+.....   .++|++||+||+|+...+.+..+++.+++..+++++++||| +++.|+
T Consensus        94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv  173 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV  173 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence            99999999999999999999999877632   57999999999999877788899999999999999999999 899999


Q ss_pred             HHHHHHHHHHHHH
Q 026548          179 DTAFFRLLQEIYG  191 (237)
Q Consensus       179 ~~~~~~l~~~i~~  191 (237)
                      +++|+.|++.+.+
T Consensus       174 ~~lf~~l~~~i~~  186 (187)
T 3c5c_A          174 QHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.1e-32  Score=212.57  Aligned_cols=170  Identities=36%  Similarity=0.646  Sum_probs=139.9

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  101 (237)
                      .......++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+
T Consensus        22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  101 (199)
T 2p5s_A           22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA  101 (199)
T ss_dssp             ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred             CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence            34556689999999999999999999999988777778888888888888999889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC------CCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV------DMRAVSAEDAVEFAEDQGLFFSEASALNG  175 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  175 (237)
                      |++|+|||++++.+++.+..|+..+......++|++||+||+|+.      ..+.+..+++.+++...++++++|||++|
T Consensus       102 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g  181 (199)
T 2p5s_A          102 DGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG  181 (199)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTC
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence            999999999999999999999999887766689999999999986      34567788899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQEIYG  191 (237)
Q Consensus       176 ~gi~~~~~~l~~~i~~  191 (237)
                      .|++++|.+|++.+.+
T Consensus       182 ~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          182 SNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TTHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-31  Score=210.03  Aligned_cols=172  Identities=43%  Similarity=0.804  Sum_probs=153.8

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      .....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|+
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            34567999999999999999999999999888888888888888888999988899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      +|+|||++++.+++.+..|+..+......++|++||+||+|+ ..+....++..+++..++++++++||+++.|++++|+
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  174 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF  174 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999999988876668999999999999 4456778888899999999999999999999999999


Q ss_pred             HHHHHHHHhhhcc
Q 026548          184 RLLQEIYGAVSKK  196 (237)
Q Consensus       184 ~l~~~i~~~~~~~  196 (237)
                      +|.+.+.++....
T Consensus       175 ~l~~~~~~~~~~~  187 (213)
T 3cph_A          175 TLAKLIQEKIDSN  187 (213)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhh
Confidence            9999998877543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.7e-31  Score=203.03  Aligned_cols=167  Identities=34%  Similarity=0.644  Sum_probs=147.2

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      ....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            34679999999999999999999999998888888888888888888999889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-HcCCeEEEEcCCCCCCHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-DQGLFFSEASALNGDNVD  179 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~  179 (237)
                      ++|||++++.+++.+..|+..+.....    .++|+++|+||+|+. .+....+++.+++. ..+++++++||++|.|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  162 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999999876653    578999999999987 45677888888888 567889999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 026548          180 TAFFRLLQEIYGA  192 (237)
Q Consensus       180 ~~~~~l~~~i~~~  192 (237)
                      ++|++|++.++++
T Consensus       163 ~l~~~l~~~~~~~  175 (177)
T 1wms_A          163 AAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=7.8e-32  Score=207.53  Aligned_cols=168  Identities=40%  Similarity=0.679  Sum_probs=148.5

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-hhhHhhhcCCc
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-AVTSAYYRGAL  102 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d  102 (237)
                      .....+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+. .++..+++.+|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            34467999999999999999999999999888888888888888888899988999999999999998 88899999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC---CCH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG---DNV  178 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~gi  178 (237)
                      ++|+|||++++.+++.+..|+..+.... ..++|++||+||+|+...+++..++..+++...+++++++||+++   .|+
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i  175 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV  175 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence            9999999999999999999999988775 368999999999999877788888999999999999999999999   999


Q ss_pred             HHHHHHHHHHHHH
Q 026548          179 DTAFFRLLQEIYG  191 (237)
Q Consensus       179 ~~~~~~l~~~i~~  191 (237)
                      +++|++|++.+.+
T Consensus       176 ~~l~~~l~~~i~~  188 (189)
T 1z06_A          176 EAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHHC-----
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=6e-32  Score=205.62  Aligned_cols=164  Identities=38%  Similarity=0.693  Sum_probs=151.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            46899999999999999999999999888888898888888889999988899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |||++++.++..+..|+..+......++|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|++|.
T Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  172 (179)
T 2y8e_A           93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  172 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999998876656899999999999987778888889999999999999999999999999999988


Q ss_pred             HHHH
Q 026548          187 QEIY  190 (237)
Q Consensus       187 ~~i~  190 (237)
                      +.+.
T Consensus       173 ~~~~  176 (179)
T 2y8e_A          173 AALP  176 (179)
T ss_dssp             HTCC
T ss_pred             HHHh
Confidence            7654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=2.4e-31  Score=206.33  Aligned_cols=167  Identities=40%  Similarity=0.680  Sum_probs=149.1

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEE----------------------------
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKI----------------------------   76 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   76 (237)
                      .+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            3457899999999999999999999999888888888888887777777655                            


Q ss_pred             ---------EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           77 ---------IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        77 ---------~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                               +.+.||||||++.+...+..+++.+|++|+|||++++.+++.+..|+..+....  +.|+++|+||+| ..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cc
Confidence                     789999999999999999999999999999999999999999999999988765  499999999999 55


Q ss_pred             CcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548          148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~  194 (237)
                      .+....+++.+++...+++++++||+++.|++++|++|.+.+.++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  207 (208)
T 3clv_A          161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII  207 (208)
T ss_dssp             -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence            56778889999999999999999999999999999999999987754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.8e-31  Score=205.00  Aligned_cols=166  Identities=18%  Similarity=0.284  Sum_probs=143.9

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  101 (237)
                      .......+||+|+|++|+|||||+++|+++.+...+.++. . .....+.+++..+.+.||||+|++.+.     +++.+
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~   86 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-G-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV   86 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-E-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-c-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence            3455668999999999999999999999999887776663 3 334778889999999999999998877     77889


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCC
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLV--DMRAVSAEDAVEFAEDQG-LFFSEASALNGDN  177 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  177 (237)
                      |++++|||++++.+++.+..|+..+..... .++|++||+||+|+.  ..+.+..+++.+++..++ ++|++|||++|.|
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            999999999999999999999999987754 579999999999984  456788899999999997 8999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 026548          178 VDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       178 i~~~~~~l~~~i~~~~~  194 (237)
                      ++++|++|++.+.++..
T Consensus       167 v~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          167 VERVFQDVAQKVVALRK  183 (184)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999887643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=2.2e-32  Score=214.26  Aligned_cols=168  Identities=31%  Similarity=0.546  Sum_probs=142.9

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4579999999999999999999999988777777776554 455667887889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--------CCHHHHHHHHHHcCC-eEEEEcCCCC
Q 026548          106 VVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMRA--------VSAEDAVEFAEDQGL-FFSEASALNG  175 (237)
Q Consensus       106 lv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~  175 (237)
                      +|||++++.+++.+. .|+..+.... .++|++||+||+|+...+.        +..+++.+++..+++ ++++|||++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999986 7999888765 4799999999999865433        367888899999996 8999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhhc
Q 026548          176 DNVDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       176 ~gi~~~~~~l~~~i~~~~~~  195 (237)
                      .|++++|++|++.+.+...+
T Consensus       165 ~gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC---
T ss_pred             CCHHHHHHHHHHHHhhhhhh
Confidence            99999999999998776443

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=3.2e-32  Score=207.24  Aligned_cols=167  Identities=34%  Similarity=0.563  Sum_probs=147.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECC-EEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-KIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      .+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            3578999999999999999999999887766667877788888888876 678899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHAD--SSIR-IILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      |+|||++++.+++.+..|+..+.....  .+.| ++||+||+|+.+.+.+..+++.+++...+++++++||++|.|++++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC  163 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            999999999999999999988876432  2445 8999999999877778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 026548          182 FFRLLQEIYGA  192 (237)
Q Consensus       182 ~~~l~~~i~~~  192 (237)
                      |++|.+.+.+.
T Consensus       164 ~~~l~~~~~~~  174 (178)
T 2hxs_A          164 FQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhh
Confidence            99999887654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=4.3e-32  Score=213.37  Aligned_cols=171  Identities=23%  Similarity=0.415  Sum_probs=145.8

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  101 (237)
                      +......+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.||||+|++.+..++..+++.+
T Consensus        21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   99 (214)
T 3q3j_B           21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS   99 (214)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence            34445679999999999999999999999998888888887766 35566677778999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eE
Q 026548          102 LGAVVVYDITKRQSFDH-VARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FF  167 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~  167 (237)
                      |++|+|||++++.++.. +..|+..+.... .++|++||+||+|+...            +.+..+++.+++..+++ +|
T Consensus       100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  178 (214)
T 3q3j_B          100 DAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY  178 (214)
T ss_dssp             SEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             eEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence            99999999999999998 789999988876 58999999999999753            67889999999999999 89


Q ss_pred             EEEcCCCCCC-HHHHHHHHHHHHHHhhh
Q 026548          168 SEASALNGDN-VDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       168 ~~~Sa~~~~g-i~~~~~~l~~~i~~~~~  194 (237)
                      ++|||++|.| ++++|+++++.+.++..
T Consensus       179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          179 LEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             EECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             EEeccCCCcccHHHHHHHHHHHHhccCc
Confidence            9999999998 99999999998876654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.6e-31  Score=204.25  Aligned_cols=169  Identities=40%  Similarity=0.719  Sum_probs=152.8

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      .....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            33457999999999999999999999999888888888888888888999998999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      +|+|||++++.++..+..|+..+..... .++|++||+||+|+. .+.+..+++.+++...+++++++||+++.|++++|
T Consensus        91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF  169 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            9999999999999999999998877653 579999999999984 35667888999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 026548          183 FRLLQEIYGAV  193 (237)
Q Consensus       183 ~~l~~~i~~~~  193 (237)
                      ++|.+.+.+..
T Consensus       170 ~~l~~~~~~~~  180 (195)
T 1x3s_A          170 EELVEKIIQTP  180 (195)
T ss_dssp             HHHHHHHHTSG
T ss_pred             HHHHHHHHhhh
Confidence            99999987654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=2e-31  Score=200.36  Aligned_cols=164  Identities=35%  Similarity=0.573  Sum_probs=144.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            368999999999999999999999988777767766554 3556778888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      |||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+++..+++.+++..++++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999999877664 589999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 026548          186 LQEIYG  191 (237)
Q Consensus       186 ~~~i~~  191 (237)
                      .+.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998864

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=2.4e-31  Score=200.17  Aligned_cols=163  Identities=28%  Similarity=0.372  Sum_probs=124.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|++|+|||||+++|.+....... ++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            579999999999999999999977754332 4444444 45667889999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            999999999999999999877543 6799999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 026548          187 QEIYGA  192 (237)
Q Consensus       187 ~~i~~~  192 (237)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.8e-31  Score=200.76  Aligned_cols=162  Identities=31%  Similarity=0.506  Sum_probs=144.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .++|+|+|++|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            589999999999999999999999887777777765543 5566677788999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      ||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++..+ +++++++||++|.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence            999999999999999988877543 68999999999999877778888999999988 7899999999999999999999


Q ss_pred             HHHHH
Q 026548          186 LQEIY  190 (237)
Q Consensus       186 ~~~i~  190 (237)
                      .+.+.
T Consensus       162 ~~~i~  166 (167)
T 1c1y_A          162 VRQIN  166 (167)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88763

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=5.7e-31  Score=201.57  Aligned_cols=167  Identities=35%  Similarity=0.552  Sum_probs=148.9

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++|
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            3579999999999999999999999988777767766554 455677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      +|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++.+++..++++++++||+++.|++++|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  174 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  174 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            99999999999999999999877664 58999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 026548          185 LLQEIYGAV  193 (237)
Q Consensus       185 l~~~i~~~~  193 (237)
                      |.+.+.++.
T Consensus       175 l~~~i~~~~  183 (187)
T 2a9k_A          175 LMREIRARK  183 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999987654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=3.2e-31  Score=199.07  Aligned_cols=163  Identities=28%  Similarity=0.454  Sum_probs=146.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .++|+|+|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            5899999999999999999999998877776766544 366777888888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+...+++..++..+++...+++++++||++|.|++++|++|.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence            999999999999999998877654 6799999999999987778888889999999999999999999999999999999


Q ss_pred             HHHHH
Q 026548          187 QEIYG  191 (237)
Q Consensus       187 ~~i~~  191 (237)
                      +.+.+
T Consensus       162 ~~~~~  166 (167)
T 1kao_A          162 RQMNY  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=5.6e-31  Score=203.54  Aligned_cols=168  Identities=25%  Similarity=0.448  Sum_probs=148.4

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      .....+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            4456899999999999999999999999987777788776655 467788888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC--cCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHH
Q 026548          104 AVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM--RAVSAEDAVEFAEDQGLF-FSEASALNGDNVD  179 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  179 (237)
                      +|+|||++++.++..+ ..|+..+.... .++|++||+||+|+...  +.+..+++.+++..+++. ++++||++|.|++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN  176 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence            9999999999999997 77888887664 57999999999998753  677889999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 026548          180 TAFFRLLQEIYGAV  193 (237)
Q Consensus       180 ~~~~~l~~~i~~~~  193 (237)
                      ++|++|++.+.++.
T Consensus       177 ~l~~~l~~~i~~~~  190 (194)
T 3reg_A          177 EVFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999887653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.5e-31  Score=204.49  Aligned_cols=169  Identities=31%  Similarity=0.491  Sum_probs=148.3

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      .....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++. ...+..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            345679999999999999999999999998877777777554 45577788889999999999988 7778889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC-CHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTA  181 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~  181 (237)
                      +|+|||++++.+++.+..|+..+..... .++|++||+||+|+...+.+..+++.+++..+++++++|||++|. |++++
T Consensus       102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l  181 (196)
T 2atv_A          102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI  181 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence            9999999999999999999998877643 689999999999998777888899999999999999999999999 99999


Q ss_pred             HHHHHHHHHHhhh
Q 026548          182 FFRLLQEIYGAVS  194 (237)
Q Consensus       182 ~~~l~~~i~~~~~  194 (237)
                      |++|++.+.++..
T Consensus       182 ~~~l~~~i~~~~~  194 (196)
T 2atv_A          182 FYELCREVRRRRM  194 (196)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999876543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.5e-31  Score=204.00  Aligned_cols=171  Identities=29%  Similarity=0.457  Sum_probs=148.1

Q ss_pred             ccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhh
Q 026548           19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYY   98 (237)
Q Consensus        19 ~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   98 (237)
                      .|........++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++
T Consensus         9 ~m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   87 (194)
T 2atx_A            9 SMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY   87 (194)
T ss_dssp             CCSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGC
T ss_pred             ccCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhc
Confidence            34445556789999999999999999999999988777777776554 45566777778899999999999999999999


Q ss_pred             cCCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC
Q 026548           99 RGALGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL  165 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~  165 (237)
                      +.+|++|+|||++++.++..+. .|+..+.... .++|++||+||+|+...            +.+..+++.+++..+++
T Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  166 (194)
T 2atx_A           88 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA  166 (194)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC
Confidence            9999999999999999999987 7988888765 47999999999999753            46778889999999997


Q ss_pred             -eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548          166 -FFSEASALNGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       166 -~~~~~Sa~~~~gi~~~~~~l~~~i~~  191 (237)
                       ++++|||++|.|++++|++|++.++.
T Consensus       167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          167 CCYVECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence             89999999999999999999988763

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=5.9e-31  Score=204.41  Aligned_cols=171  Identities=27%  Similarity=0.431  Sum_probs=139.7

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  101 (237)
                      +......++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++
T Consensus        14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   92 (201)
T 2q3h_A           14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT   92 (201)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred             CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence            34556689999999999999999999999987777777776444 45677888888999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC------------CcCCCHHHHHHHHHHcCC-eE
Q 026548          102 LGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQGL-FF  167 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~  167 (237)
                      |++|+|||++++.++..+. .|+..+.... .++|++||+||+|+..            .+.+..+++..++..+++ ++
T Consensus        93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (201)
T 2q3h_A           93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY  171 (201)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence            9999999999999999986 7998888765 4899999999999865            256778889999999887 89


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548          168 SEASALNGDNVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       168 ~~~Sa~~~~gi~~~~~~l~~~i~~~~~  194 (237)
                      ++|||++|.|++++|++|++.+++...
T Consensus       172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          172 IECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EEEecCCCCCHHHHHHHHHHHHhcccc
Confidence            999999999999999999999876643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=5.4e-31  Score=206.58  Aligned_cols=170  Identities=27%  Similarity=0.331  Sum_probs=140.8

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCC--cCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch-hchhhHhhhc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEF--FFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER-YRAVTSAYYR   99 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~   99 (237)
                      ......+||+|+|++|+|||||+++|++...  ...+ ++++.++..+.+.+++..+.+.+|||+|.+. +..+...+++
T Consensus        32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~  110 (211)
T 2g3y_A           32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ  110 (211)
T ss_dssp             ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh
Confidence            3445679999999999999999999997543  2322 4466667777888899999999999999877 4556667788


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                      .+|++|+|||+++..+++.+..|+..+.... ..++|++||+||+|+...+.+..++...++..+++++++|||++|.||
T Consensus       111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v  190 (211)
T 2g3y_A          111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV  190 (211)
T ss_dssp             CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred             hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            9999999999999999999999998877643 257999999999999877778888888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 026548          179 DTAFFRLLQEIYGAV  193 (237)
Q Consensus       179 ~~~~~~l~~~i~~~~  193 (237)
                      +++|++|++.+..+.
T Consensus       191 ~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          191 KELFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999886544

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.98  E-value=1.7e-31  Score=203.59  Aligned_cols=169  Identities=36%  Similarity=0.632  Sum_probs=135.3

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      ....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            3457899999999999999999999999888888888888887777776 556789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCC-CcCCCHHHHHHHHH-HcCCeEEEEcCCCCCC
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVD-MRAVSAEDAVEFAE-DQGLFFSEASALNGDN  177 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g  177 (237)
                      +|+|||++++.+++.+..|+..+.....    .++|++||+||+|+.. .+.+..+++.+++. ..+++++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999998877643    5799999999999954 34567888888888 4668899999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 026548          178 VDTAFFRLLQEIYGAV  193 (237)
Q Consensus       178 i~~~~~~l~~~i~~~~  193 (237)
                      ++++|++|.+.+.++.
T Consensus       165 i~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          165 VDTAFEEIARSALQQN  180 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.98  E-value=1.9e-30  Score=199.11  Aligned_cols=168  Identities=33%  Similarity=0.549  Sum_probs=146.0

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.. +.....+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999988777766664 4455677788988899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      |||++++.+++.+..|+..+..... .++|++||+||+|+.. .....+.+.+++..++++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  160 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL  160 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999887654 6899999999999873 4567888999999999999999999999999999999


Q ss_pred             HHHHHHhhhcc
Q 026548          186 LQEIYGAVSKK  196 (237)
Q Consensus       186 ~~~i~~~~~~~  196 (237)
                      .+.+.+.....
T Consensus       161 ~~~~~~~~~~~  171 (189)
T 4dsu_A          161 VREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhhhhc
Confidence            99988776543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.98  E-value=7.3e-31  Score=199.90  Aligned_cols=164  Identities=21%  Similarity=0.323  Sum_probs=139.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...+||+|+|++|+|||||+++|.+..+.. +.++.+.. ....+.+++..+.+.+|||||++.     ..+++++|++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            356899999999999999999999998876 55666644 356777888889999999999876     45788899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCC--CCcCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLV--DMRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVD  179 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~  179 (237)
                      +|||++++.+++.+..|+..+.....   .++|++||+||+|+.  ..+.+..+++.+++... ++++++|||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            99999999999999998776655432   579999999999984  45677888899998876 6889999999999999


Q ss_pred             HHHHHHHHHHHHhhhcc
Q 026548          180 TAFFRLLQEIYGAVSKK  196 (237)
Q Consensus       180 ~~~~~l~~~i~~~~~~~  196 (237)
                      ++|+++++.+.+.....
T Consensus       158 ~lf~~l~~~~~~~~~~~  174 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQQ  174 (178)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999998776543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.98  E-value=4.5e-32  Score=211.39  Aligned_cols=170  Identities=31%  Similarity=0.518  Sum_probs=115.1

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC--CCcCCCCCCcceeEEEEEEEECCE--EEEEEEEeCCCcchhchhhHhhhcCC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFFFDSKSTIGVEFQTRTVTINGK--IIKAQIWDTAGQERYRAVTSAYYRGA  101 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~  101 (237)
                      ...++|+|+|++|+|||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.||||||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999998  777677778777777778888876  78899999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCC-CcCCCHHHHHHHHHHcCCeEEEEcCCC-CC
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLVD-MRAVSAEDAVEFAEDQGLFFSEASALN-GD  176 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  176 (237)
                      |++|+|||++++.+++.+..|+..+.....   .++|++||+||+|+.. .+.+..+++.+++..+++++++|||++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988765   5899999999999987 677888999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHhhhc
Q 026548          177 NVDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       177 gi~~~~~~l~~~i~~~~~~  195 (237)
                      |++++|++|.+.+.+...+
T Consensus       178 gi~~l~~~i~~~~~~~~~~  196 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYED  196 (208)
T ss_dssp             --CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999998877654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=3.6e-31  Score=205.03  Aligned_cols=164  Identities=26%  Similarity=0.362  Sum_probs=142.2

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.||||||++.+..++..+++.+|++|+
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL   85 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence            4689999999999999999999998887777677664443 456678888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |||++++.+++.+..|+..+.....  .++|++||+||+|+.. +....+++..++..++++++++||++|.|++++|++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (199)
T 2gf0_A           86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE  164 (199)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence            9999999999999888887766543  4789999999999875 556778888999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 026548          185 LLQEIYGA  192 (237)
Q Consensus       185 l~~~i~~~  192 (237)
                      |.+.+.++
T Consensus       165 l~~~~~~~  172 (199)
T 2gf0_A          165 LLTLETRR  172 (199)
T ss_dssp             HHHHCSSS
T ss_pred             HHHHHhhh
Confidence            98876543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.97  E-value=5.9e-31  Score=201.84  Aligned_cols=165  Identities=27%  Similarity=0.470  Sum_probs=143.4

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      ....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            34578999999999999999999999988877777776655 34566777788999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcC-CeEEEE
Q 026548          105 VVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQG-LFFSEA  170 (237)
Q Consensus       105 ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  170 (237)
                      |+|||++++.+++.+ ..|+..+.... .++|++||+||+|+...            +.+..+++.+++..++ ++|++|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 78988887765 57999999999999742            5677888999999988 689999


Q ss_pred             cCC-CCCCHHHHHHHHHHHHHH
Q 026548          171 SAL-NGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       171 Sa~-~~~gi~~~~~~l~~~i~~  191 (237)
                      ||+ ++.|++++|+.+++.+++
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            998 689999999999998764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.97  E-value=7.5e-31  Score=205.02  Aligned_cols=167  Identities=27%  Similarity=0.465  Sum_probs=143.7

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|
T Consensus        23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  101 (205)
T 1gwn_A           23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD  101 (205)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence            3456689999999999999999999999998877778877665 345666777789999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcC-CeEE
Q 026548          103 GAVVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQG-LFFS  168 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~  168 (237)
                      ++|+|||++++.+++.+ ..|+..+.... .++|++||+||+|+...            +.+..+++.+++..++ ++++
T Consensus       102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  180 (205)
T 1gwn_A          102 AVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI  180 (205)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEE
Confidence            99999999999999998 78998887765 57999999999998642            4677888999999888 6899


Q ss_pred             EEcCC-CCCCHHHHHHHHHHHHHH
Q 026548          169 EASAL-NGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       169 ~~Sa~-~~~gi~~~~~~l~~~i~~  191 (237)
                      +|||+ ++.|++++|+.|++.+++
T Consensus       181 e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          181 ECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EeeeccCCcCHHHHHHHHHHHHhh
Confidence            99998 689999999999998875

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.97  E-value=4.5e-30  Score=199.74  Aligned_cols=165  Identities=26%  Similarity=0.430  Sum_probs=145.4

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      ....+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            346799999999999999999999999988777787776665 3467788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEE
Q 026548          105 VVVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEA  170 (237)
Q Consensus       105 ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  170 (237)
                      |+|||++++.+++.+ ..|+..+.... .++|++||+||+|+...            +.+..+++.+++...+. ++++|
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence            999999999999998 67888877755 47999999999998764            45778889999999998 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHH
Q 026548          171 SALNGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       171 Sa~~~~gi~~~~~~l~~~i~~  191 (237)
                      ||++|.|++++|++|.+.+++
T Consensus       180 SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999988764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.97  E-value=7.8e-30  Score=196.28  Aligned_cols=168  Identities=33%  Similarity=0.520  Sum_probs=136.0

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      .-..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+...+..+++.+|++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   96 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   96 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence            34569999999999999999999999888777666665443 45677788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      ++|||+++..++..+..|+..+..... .++|++||+||+|+.. +....+++.+++...+++++++||+++.|++++|+
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  175 (190)
T 3con_A           97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY  175 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998877654 5799999999999875 55678889999999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 026548          184 RLLQEIYGAVS  194 (237)
Q Consensus       184 ~l~~~i~~~~~  194 (237)
                      +|.+.+.+...
T Consensus       176 ~l~~~~~~~~~  186 (190)
T 3con_A          176 TLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            99998876543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=9.6e-30  Score=190.66  Aligned_cols=162  Identities=33%  Similarity=0.587  Sum_probs=142.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            47999999999999999999999887777666665443 56677788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ||+++..++..+..|+..+..... .++|+++|+||+|+.. +....++..+++...+++++++||+++.|++++|++|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999998877654 4799999999999876 45677889999999999999999999999999999999


Q ss_pred             HHHHH
Q 026548          187 QEIYG  191 (237)
Q Consensus       187 ~~i~~  191 (237)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T 2ce2_X          161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.97  E-value=2.9e-30  Score=197.58  Aligned_cols=164  Identities=30%  Similarity=0.511  Sum_probs=143.7

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            468999999999999999999999888777777765444 4566788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEcC
Q 026548          107 VYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEASA  172 (237)
Q Consensus       107 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa  172 (237)
                      |||++++.++..+. .|+..+.... .++|++||+||+|+...            +.+..++..+++...++ ++++|||
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence            99999999999987 7888887765 38999999999998653            46678888999999997 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHh
Q 026548          173 LNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       173 ~~~~gi~~~~~~l~~~i~~~  192 (237)
                      ++|.|++++|+++.+.+++.
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          162 LTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHSCC
T ss_pred             CCccCHHHHHHHHHHHHhcc
Confidence            99999999999999887643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=3.5e-30  Score=202.35  Aligned_cols=166  Identities=29%  Similarity=0.473  Sum_probs=125.1

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+|+|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.||||||++.+..++..+++.+|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            3479999999999999999999999988777767765443 456778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEc
Q 026548          106 VVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEAS  171 (237)
Q Consensus       106 lv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  171 (237)
                      +|||++++.+++.+. .|+..+.... .++|++||+||+|+...            +.+..+++.+++..+++ ++++||
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 7988887765 57999999999998764            25677888999999997 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Q 026548          172 ALNGDNVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       172 a~~~~gi~~~~~~l~~~i~~~~  193 (237)
                      |++|.|++++|++|++.+++..
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999887653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=4.3e-30  Score=193.97  Aligned_cols=162  Identities=30%  Similarity=0.391  Sum_probs=141.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            3589999999999999999999998887777677665543 456678888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |||++++.+++.+..|+..+.....  .++|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999999999888776542  47999999999999877778888888999999999999999999999999999


Q ss_pred             HHHHH
Q 026548          185 LLQEI  189 (237)
Q Consensus       185 l~~~i  189 (237)
                      |.+.+
T Consensus       161 l~~~~  165 (172)
T 2erx_A          161 LLNLE  165 (172)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            88754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=4.4e-33  Score=216.40  Aligned_cols=170  Identities=46%  Similarity=0.800  Sum_probs=143.4

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      ...+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|
T Consensus        28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d  107 (199)
T 3l0i_B           28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH  107 (199)
T ss_dssp             CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence            34467899999999999999999999998887777778888888888999998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          103 GAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      ++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++.+++..++++++++||+++.|++++|
T Consensus       108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~  187 (199)
T 3l0i_B          108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF  187 (199)
T ss_dssp             EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999987766789999999999998776666677888999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 026548          183 FRLLQEIYGA  192 (237)
Q Consensus       183 ~~l~~~i~~~  192 (237)
                      ++|.+.+.++
T Consensus       188 ~~l~~~l~~~  197 (199)
T 3l0i_B          188 MTMAAEIKKR  197 (199)
T ss_dssp             HHHTTTTTTT
T ss_pred             HHHHHHHHHh
Confidence            9998876554

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=1.9e-30  Score=204.06  Aligned_cols=169  Identities=30%  Similarity=0.523  Sum_probs=146.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      ...+||+|+|.+|+|||||+++|++..+...+.++.+.......+... +..+.+.||||||++.+..++..++..+|++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA   88 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence            457999999999999999999999988877767777776666665553 4447899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+...+++...++++++|||++|.|++++|++
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  168 (218)
T 4djt_A           89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH  168 (218)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999998877667999999999999877778888888999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 026548          185 LLQEIYGAVS  194 (237)
Q Consensus       185 l~~~i~~~~~  194 (237)
                      |.+.+.+...
T Consensus       169 l~~~~~~~~~  178 (218)
T 4djt_A          169 LARIFTGRPD  178 (218)
T ss_dssp             HHHHHHCCTT
T ss_pred             HHHHHhcccc
Confidence            9998876654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.1e-29  Score=198.42  Aligned_cols=165  Identities=27%  Similarity=0.422  Sum_probs=139.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.||||||++.+...+..+++.+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            35689999999999999999999999988777777766654 34677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEc
Q 026548          106 VVYDITKRQSFDHV-ARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEAS  171 (237)
Q Consensus       106 lv~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  171 (237)
                      +|||++++.++..+ ..|+..+.... .++|++||+||+|+...            +.+..++..+++...++ ++++||
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 67888887754 57999999999998654            45678888899999998 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHh
Q 026548          172 ALNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       172 a~~~~gi~~~~~~l~~~i~~~  192 (237)
                      |++|.|++++|++|.+.++++
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=1.6e-29  Score=195.51  Aligned_cols=166  Identities=28%  Similarity=0.355  Sum_probs=137.5

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCC--CcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch-hchhhHhhhcCCcE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNE--FFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER-YRAVTSAYYRGALG  103 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~  103 (237)
                      ..+||+|+|++|+|||||+++|++..  +...+ ++++.++....+.+++..+.+.+|||+|.+. +..+...+++.+|+
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            46899999999999999999999643  23322 3455666677788899999999999999776 55567778899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      +++|||+++..+++.+..|+..+..... .++|+++|+||+|+...+.+..++...++..+++++++|||++|.||+++|
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf  163 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF  163 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHH
Confidence            9999999999999999999988776533 579999999999998767788888888888899999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 026548          183 FRLLQEIYGAV  193 (237)
Q Consensus       183 ~~l~~~i~~~~  193 (237)
                      +++++.+....
T Consensus       164 ~~l~~~~~~~~  174 (192)
T 2cjw_A          164 EGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999886554

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=4.6e-30  Score=198.77  Aligned_cols=170  Identities=19%  Similarity=0.302  Sum_probs=130.6

Q ss_pred             cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhh
Q 026548           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYY   98 (237)
Q Consensus        20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   98 (237)
                      ..+.+.....+|+|+|.+|+|||||+++|++..+.. .+.++.+...  ..+...+  +.+.||||||++.+..++..++
T Consensus         9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~   84 (199)
T 4bas_A            9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYY   84 (199)
T ss_dssp             -------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGC
T ss_pred             ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHH
Confidence            344566778999999999999999999999999887 6777777443  3444444  6788999999999999999999


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCcCCCHHHHHHH------HHHcC
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHAD--------SSIRIILIGNKSDLVDMRAVSAEDAVEF------AEDQG  164 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~vvv~nK~D~~~~~~~~~~~~~~~------~~~~~  164 (237)
                      +.+|++|+|||++++.++..+..|+..+.....        .++|++||+||+|+....  ..++..+.      +...+
T Consensus        85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~  162 (199)
T 4bas_A           85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHP  162 (199)
T ss_dssp             TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSC
T ss_pred             hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCe
Confidence            999999999999999999999999888765421        279999999999997642  22222221      13467


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q 026548          165 LFFSEASALNGDNVDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       165 ~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~  195 (237)
                      +++++|||++|.|++++|++|++.+.++..+
T Consensus       163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~  193 (199)
T 4bas_A          163 FVIFASNGLKGTGVHEGFSWLQETASRQSGK  193 (199)
T ss_dssp             EEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             eEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence            7899999999999999999999998877544

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=6.8e-29  Score=192.78  Aligned_cols=171  Identities=63%  Similarity=1.017  Sum_probs=152.0

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            45799999999999999999999999988888888888888888999999899999999999999988999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|||+++..++..+..|+..+......+.|+++++||+|+.+.+....++++.++...++.++++|++++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999998889888776655678999999999998777778888999999999999999999999999999999


Q ss_pred             HHHHHHhhhcc
Q 026548          186 LQEIYGAVSKK  196 (237)
Q Consensus       186 ~~~i~~~~~~~  196 (237)
                      .+.+.+.....
T Consensus       163 ~~~~~~~~~~~  173 (199)
T 2f9l_A          163 LTEIYRIVSQK  173 (199)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHhhc
Confidence            99998766433

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=2.7e-30  Score=203.78  Aligned_cols=171  Identities=29%  Similarity=0.528  Sum_probs=150.5

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  101 (237)
                      .......+||+|+|.+|+|||||+++|+.+.+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+
T Consensus         9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (221)
T 3gj0_A            9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA   88 (221)
T ss_dssp             TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence            34555689999999999999999999887777777778888888888888999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      |++|+|||++++.++..+..|+..+.... .++|++||+||+|+.+...  .++...++...++++++|||++|.|++++
T Consensus        89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  165 (221)
T 3gj0_A           89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP  165 (221)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998876 4799999999999975432  22566788888999999999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 026548          182 FFRLLQEIYGAVSK  195 (237)
Q Consensus       182 ~~~l~~~i~~~~~~  195 (237)
                      |++|.+.+......
T Consensus       166 ~~~l~~~l~~~~~~  179 (221)
T 3gj0_A          166 FLWLARKLIGDPNL  179 (221)
T ss_dssp             HHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHhCccc
Confidence            99999998776543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=2.2e-30  Score=200.01  Aligned_cols=168  Identities=22%  Similarity=0.258  Sum_probs=136.3

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-----------CCCcceeEEEEEE-EECCEEEEEEEEeCCCcchhc
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-----------KSTIGVEFQTRTV-TINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      .....+||+|+|++|+|||||++.+.+.. ...+           .++.+.++....+ .+++..+.+.||||||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            44668999999999999999997766543 3332           2343334333333 456677899999999999999


Q ss_pred             hhhHhhhcCCcEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC
Q 026548           92 AVTSAYYRGALGAVVVYDIT------KRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL  165 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~  165 (237)
                      .++..+++.+|++|+|||++      +..++..+..|+..+.. ...++|++||+||+|+..  ....+++.+++...++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~  165 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK  165 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence            99999999999999999999      56777788888887632 236899999999999976  4778899999999999


Q ss_pred             -eEEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q 026548          166 -FFSEASALNGDNVDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       166 -~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~  195 (237)
                       +++++||++|.|++++|++|++.+.++...
T Consensus       166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence             999999999999999999999999887653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=8.4e-31  Score=200.04  Aligned_cols=163  Identities=31%  Similarity=0.537  Sum_probs=126.6

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            34689999999999999999999998877666666554332 23445666778889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcC----------CCHHHHHHHHHHcCC-eEEEEcCC
Q 026548          106 VVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMRA----------VSAEDAVEFAEDQGL-FFSEASAL  173 (237)
Q Consensus       106 lv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  173 (237)
                      +|||++++.+++.+. .|+..+.... .++|++||+||+|+.+.+.          +..+++.+++..+++ ++++|||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            999999999999987 7988888765 4799999999999865433          467788899999996 89999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 026548          174 NGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i~  190 (237)
                      +|.|++++|++|++.++
T Consensus       164 ~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCTTHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=1.1e-29  Score=198.10  Aligned_cols=163  Identities=29%  Similarity=0.494  Sum_probs=138.7

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      ....+||+|+|.+|+|||||+++|+.+.+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            34579999999999999999999999988777766664 44455667788888899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------CCCHHHHHHHHHHcCC-eEEEE
Q 026548          105 VVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMR------------AVSAEDAVEFAEDQGL-FFSEA  170 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~  170 (237)
                      |+|||++++.+++.+. .|+..+.... .++|++||+||+|+....            .+..+++..++...++ ++++|
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999986 7888888776 689999999999986543            3678888899999986 59999


Q ss_pred             cCCCCCCHHHHHHHHHHHH
Q 026548          171 SALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       171 Sa~~~~gi~~~~~~l~~~i  189 (237)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=4.1e-28  Score=187.34  Aligned_cols=168  Identities=63%  Similarity=1.023  Sum_probs=151.5

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  101 (237)
                      ....+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+
T Consensus        23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~  102 (191)
T 1oix_A           23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA  102 (191)
T ss_dssp             -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence            34556789999999999999999999999998888889999999889999999988899999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      +++++|||+.+..+++.+..|+..+......+.|+++++||+|+.+.+....+.++.++...++.++++|++++.+++++
T Consensus       103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l  182 (191)
T 1oix_A          103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA  182 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999998888988877655567899999999999876777888899999999999999999999999999


Q ss_pred             HHHHHHHH
Q 026548          182 FFRLLQEI  189 (237)
Q Consensus       182 ~~~l~~~i  189 (237)
                      |+.|.+.+
T Consensus       183 ~~~l~~~i  190 (191)
T 1oix_A          183 FQTILTEI  190 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.96  E-value=1.3e-28  Score=189.42  Aligned_cols=166  Identities=21%  Similarity=0.404  Sum_probs=130.2

Q ss_pred             cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR   99 (237)
Q Consensus        20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   99 (237)
                      ..+......++|+|+|++|+|||||+++|.+..+...+.++.+..+.  .+...+  +.+.||||||++.+..++..+++
T Consensus        14 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~   89 (188)
T 1zd9_A           14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCR   89 (188)
T ss_dssp             -----CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHT
T ss_pred             ccccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHc
Confidence            34445566899999999999999999999999887777777776654  344454  67889999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCC
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASAL  173 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  173 (237)
                      .+|++|+|||++++.++..+..|+..+..... .++|++||+||+|+...  ...++..+...     ..++++++|||+
T Consensus        90 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~  167 (188)
T 1zd9_A           90 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCK  167 (188)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECC
Confidence            99999999999999999999999888766432 57999999999999753  22333322211     234579999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 026548          174 NGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i~~  191 (237)
                      +|.|++++|++|.+.+.+
T Consensus       168 ~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          168 EKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             TCTTHHHHHHHHHHTCC-
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999886643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.96  E-value=3.1e-28  Score=186.72  Aligned_cols=161  Identities=24%  Similarity=0.411  Sum_probs=130.8

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+|+|++|+|||||+++|.+.. ...+.++.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            457899999999999999999999888 55566776633  44555665  67889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVD  179 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  179 (237)
                      +|||++++.+++.+..|+..+..... .++|+++|+||+|+...  ...++..+...     ..++++++|||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            99999999999999999888766432 57999999999999763  33444433322     245679999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 026548          180 TAFFRLLQEIYGAV  193 (237)
Q Consensus       180 ~~~~~l~~~i~~~~  193 (237)
                      ++|++|.+.+.+++
T Consensus       169 ~l~~~l~~~i~~~~  182 (186)
T 1ksh_A          169 PGIDWLLDDISSRV  182 (186)
T ss_dssp             HHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=2.6e-28  Score=187.94  Aligned_cols=162  Identities=23%  Similarity=0.366  Sum_probs=130.4

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCC-CcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNE-FFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  101 (237)
                      ......++|+|+|.+|+|||||+++|.+.. +...+.++.+  +....+.+++  +.+.||||||++.+...+..+++.+
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~   91 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEG   91 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence            344557999999999999999999999887 4555556655  4445566665  6788999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCC
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHAD---SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASAL  173 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  173 (237)
                      |++|+|||++++.++..+..|+..+.....   .++|++||+||+|+..  ....+++.+++.     ..++++++|||+
T Consensus        92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  169 (190)
T 2h57_A           92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAI  169 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCC
Confidence            999999999999999999999988776543   4799999999999975  345566666553     235689999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 026548          174 NGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i~  190 (237)
                      +|.|++++|++|.+.+.
T Consensus       170 ~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          170 KGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             TTBTHHHHHHHHHHHC-
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99999999999988764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.96  E-value=1.9e-29  Score=189.34  Aligned_cols=156  Identities=21%  Similarity=0.397  Sum_probs=122.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|++|+|||||+++|.++.+.. +.++.+.  ....+...+  +.+.+|||||++.+..++..+++++|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999888654 4466553  333444444  67899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      |++++.++..+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+...     ..++++++|||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            9999999999999988876542 257999999999999653  22333322211     234579999999999999999


Q ss_pred             HHHHHHHHH
Q 026548          183 FRLLQEIYG  191 (237)
Q Consensus       183 ~~l~~~i~~  191 (237)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999887654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.96  E-value=1.5e-28  Score=185.60  Aligned_cols=158  Identities=22%  Similarity=0.346  Sum_probs=127.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..++|+|+|++|+|||||+++|.++.+.. +.++.+.  ....+.+++  +.+.+|||||++.+...+..+++.+|++|+
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF--NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc--ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            46899999999999999999999888753 4455553  345566665  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHH-----HHHcCCeEEEEcCCCCCCHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEF-----AEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                      |||++++.++..+..|+..+..... .++|++||+||+|+....  ..++..+.     +...+++++++||++|.|+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE  158 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence            9999999999999888888765432 579999999999997632  22333222     223456899999999999999


Q ss_pred             HHHHHHHHHHH
Q 026548          181 AFFRLLQEIYG  191 (237)
Q Consensus       181 ~~~~l~~~i~~  191 (237)
                      +|++|.+.+.+
T Consensus       159 l~~~l~~~i~~  169 (171)
T 1upt_A          159 AMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999988764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=2.3e-28  Score=189.76  Aligned_cols=155  Identities=21%  Similarity=0.260  Sum_probs=122.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..++|+++|++|+|||||+++|.++.+. .+.++.+..  ...+.+++  +.+.+|||||++.+..++..+++.+|++|+
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            3579999999999999999999988764 344555443  35566777  678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-----------------cCCeEE
Q 026548          107 VYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-----------------QGLFFS  168 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~  168 (237)
                      |||++++.++..+..|+..+.... ..++|+++|+||+|+..  .+..+++.+++..                 .+++++
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF  176 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence            999999999999999998876643 25799999999999975  5667777776653                 345799


Q ss_pred             EEcCCCCCCHHHHHHHHHHH
Q 026548          169 EASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       169 ~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      +|||++|.|++++|++|.+.
T Consensus       177 ~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          177 MCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             ECBTTTTBSHHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.96  E-value=5.7e-28  Score=186.33  Aligned_cols=155  Identities=21%  Similarity=0.240  Sum_probs=128.0

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..++|+++|++|+|||||+++|.+..+.. +.++.+.  ....+.+++  +.+.+|||||++.+...+..+++.+|++|+
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            35799999999999999999999988653 4455554  345667777  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH------------cCCeEEEEcCC
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAED------------QGLFFSEASAL  173 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~  173 (237)
                      |||++++.+++.+..|+..+..... .++|+++|+||+|+..  ....+++.+.+..            .++++++|||+
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  174 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV  174 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence            9999999999999999988765432 5799999999999975  5566666665442            34679999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 026548          174 NGDNVDTAFFRLLQE  188 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~  188 (237)
                      +|.|++++|++|.+.
T Consensus       175 ~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          175 MRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTBSHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHhh
Confidence            999999999998753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=1.9e-28  Score=187.36  Aligned_cols=160  Identities=24%  Similarity=0.412  Sum_probs=125.5

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCC
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  101 (237)
                      +......++|+|+|.+|+|||||+++|.+..+ ..+.++.+...  ..+.+++  +.+.+|||||++.+...+..+++.+
T Consensus        15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (181)
T 2h17_A           15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNT   89 (181)
T ss_dssp             ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred             cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence            34555679999999999999999999999887 33445555433  4455566  6788999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCC
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNG  175 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  175 (237)
                      |++|+|||++++.+++.+..|+..+.... ..++|++||+||+|+..  ....+++.+...     ..++++++|||++|
T Consensus        90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  167 (181)
T 2h17_A           90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTG  167 (181)
T ss_dssp             CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            99999999999999999999988876643 25799999999999965  334444444332     23457999999999


Q ss_pred             CCHHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQE  188 (237)
Q Consensus       176 ~gi~~~~~~l~~~  188 (237)
                      .|++++|++|++.
T Consensus       168 ~gi~~l~~~l~~~  180 (181)
T 2h17_A          168 EGLCQGLEWMMSR  180 (181)
T ss_dssp             BTHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhh
Confidence            9999999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=5.1e-28  Score=185.83  Aligned_cols=160  Identities=24%  Similarity=0.429  Sum_probs=125.8

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+|+|++|+|||||+++|.++.+. .+.++.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            34689999999999999999999988876 444555533  34455666  67889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVD  179 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  179 (237)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|+..  ....+++.+...     ..++++++|||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            99999999999999999988876532 5799999999999975  334455544432     245689999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 026548          180 TAFFRLLQEIYGA  192 (237)
Q Consensus       180 ~~~~~l~~~i~~~  192 (237)
                      ++|++|++.+...
T Consensus       167 ~l~~~l~~~~~~~  179 (187)
T 1zj6_A          167 QGLEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876433

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=5.2e-29  Score=192.45  Aligned_cols=159  Identities=20%  Similarity=0.388  Sum_probs=121.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+|+|++|+|||||+++|.++.+.. +.++.+  +....+...+  +.+.+|||||++.+...+..+++.+|++|
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            457899999999999999999999887653 334544  3344555555  67889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVD  179 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  179 (237)
                      +|||++++.+++.+..|+..+..... .++|++||+||+|+...  ...+++.+...     ..++++++|||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            99999999999999999888765432 57999999999999653  22333322211     234579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 026548          180 TAFFRLLQEIYG  191 (237)
Q Consensus       180 ~~~~~l~~~i~~  191 (237)
                      ++|++|++.+.+
T Consensus       180 ~l~~~l~~~i~~  191 (192)
T 2b6h_A          180 DGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999987653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.95  E-value=8.8e-28  Score=183.81  Aligned_cols=159  Identities=22%  Similarity=0.400  Sum_probs=124.6

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+++|++|+|||||+++|.+..+. .+.++.+.  ....+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            35689999999999999999999988653 23355553  344556665  67889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVD  179 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  179 (237)
                      +|||++++.+++.+..|+..+.... ..++|++||+||+|+....  ..++..+...     ..++++++|||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            9999999999999988888765432 2579999999999997633  3333333211     234579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 026548          180 TAFFRLLQEIYG  191 (237)
Q Consensus       180 ~~~~~l~~~i~~  191 (237)
                      ++|++|++.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.95  E-value=3.3e-27  Score=196.68  Aligned_cols=164  Identities=30%  Similarity=0.503  Sum_probs=143.9

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.||||||++.+...+..+++.+|++|
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            3468999999999999999999999988777767765444 556778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcCC-eEEEEc
Q 026548          106 VVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQGL-FFSEAS  171 (237)
Q Consensus       106 lv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  171 (237)
                      +|||++++.++..+. .|+..+.... .++|++||+||+|+...            +.+..+++.+++...++ ++++||
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  310 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  310 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence            999999999999986 7888887765 38999999999998643            56778889999999997 899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q 026548          172 ALNGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       172 a~~~~gi~~~~~~l~~~i~~  191 (237)
                      |++|.|++++|+.|.+.++.
T Consensus       311 a~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          311 ALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            99999999999999988764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.95  E-value=1.7e-28  Score=188.72  Aligned_cols=160  Identities=22%  Similarity=0.338  Sum_probs=127.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+|+|++|+|||||+++|..+.+.. +.++.+..  ...+..++  +.+.+|||||++.+...+..+++.+|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            357899999999999999999999887654 44565533  34455565  67889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFA-----EDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  179 (237)
                      +|||++++.++..+..|+..+..... .++|+++|+||+|+....  ..++..+..     ...++++++|||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            99999999999999888888766433 579999999999997532  223333221     2234579999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 026548          180 TAFFRLLQEIYGA  192 (237)
Q Consensus       180 ~~~~~l~~~i~~~  192 (237)
                      ++|++|.+.+.++
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.95  E-value=1.2e-28  Score=189.06  Aligned_cols=163  Identities=20%  Similarity=0.396  Sum_probs=121.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC--CCcCCCCCCcceeEEEEEEEE---CCEEEEEEEEeCCCcchhchhhHhhhcCCc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN--EFFFDSKSTIGVEFQTRTVTI---NGKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d  102 (237)
                      .+||+|+|++|+|||||+++|.+.  .+...+.++.+.++....+.+   ++..+.+.+|||+|++.+..++..+++++|
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  444556677777776665544   335678999999999999999999999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC---HHHHHHHHHHcCCe----EEEEcCCC
Q 026548          103 GAVVVYDITKR-QSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS---AEDAVEFAEDQGLF----FSEASALN  174 (237)
Q Consensus       103 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~  174 (237)
                      ++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.+...   .+...+++..++++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999987 57889999999887654 479999999999987543321   22344555566776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 026548          175 GD-NVDTAFFRLLQEIYG  191 (237)
Q Consensus       175 ~~-gi~~~~~~l~~~i~~  191 (237)
                      +. +++++++.+.+.+.+
T Consensus       161 ~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          161 ESDALAKLRKTIINESLN  178 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHhc
Confidence            97 899888888776654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.95  E-value=1.3e-28  Score=190.81  Aligned_cols=165  Identities=19%  Similarity=0.204  Sum_probs=121.9

Q ss_pred             cCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEE--EEE-CCEEEEEEEEeCCCcchhchhh--
Q 026548           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRT--VTI-NGKIIKAQIWDTAGQERYRAVT--   94 (237)
Q Consensus        20 ~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~l~Dt~G~~~~~~~~--   94 (237)
                      ..+.+....+||+|+|++|+|||||++++.+.....   ++.+.++....  ..+ ++..+.+.||||||++.|....  
T Consensus        12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   88 (196)
T 3llu_A           12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD   88 (196)
T ss_dssp             --------CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC
T ss_pred             CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh
Confidence            344566678999999999999999999888753322   23322222222  223 2455789999999999987776  


Q ss_pred             -HhhhcCCcEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------CcCCCHHHHHHHHH---
Q 026548           95 -SAYYRGALGAVVVYDITKR--QSFDHVARWVEELRAHADSSIRIILIGNKSDLVD-------MRAVSAEDAVEFAE---  161 (237)
Q Consensus        95 -~~~~~~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~-------~~~~~~~~~~~~~~---  161 (237)
                       ..+++++|++|+|||+++.  +++..+..|+..+.... .++|++||+||+|+..       .+.+..+...+++.   
T Consensus        89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~  167 (196)
T 3llu_A           89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL  167 (196)
T ss_dssp             HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence             8999999999999999997  67777777777765443 5899999999999754       23444555667777   


Q ss_pred             -HcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          162 -DQGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       162 -~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                       ..+++|++|||++ .|++++|..+++.+
T Consensus       168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence             6788999999999 99999999998865

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=9.9e-28  Score=183.18  Aligned_cols=160  Identities=21%  Similarity=0.364  Sum_probs=125.7

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+|+|++|+|||||+++|.++.+ ..+.++.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4578999999999999999999998877 4444666533  34555665  67889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-----QGLFFSEASALNGDNVD  179 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~  179 (237)
                      +|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.  ...+++.+....     .++++++|||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999988876653 267999999999998653  334444443322     23479999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 026548          180 TAFFRLLQEIYGA  192 (237)
Q Consensus       180 ~~~~~l~~~i~~~  192 (237)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=2.2e-30  Score=201.78  Aligned_cols=164  Identities=30%  Similarity=0.503  Sum_probs=137.5

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      .....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 3th5_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV  104 (204)
Confidence            345679999999999999999999998888766666654433 4455667777888999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc------------CCCHHHHHHHHHHcCC-eEEE
Q 026548          104 AVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDMR------------AVSAEDAVEFAEDQGL-FFSE  169 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~  169 (237)
                      +|+|||++++.+++.+. .|+..+.... .++|++||+||+|+....            .+..+++.+++...++ ++++
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  183 (204)
T 3th5_A          105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  183 (204)
Confidence            99999999999999886 7888776654 379999999999986532            4555677788888887 8999


Q ss_pred             EcCCCCCCHHHHHHHHHHHH
Q 026548          170 ASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       170 ~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      |||++|.|++++|++|++.+
T Consensus       184 vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          184 CSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            99999999999999998765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=1.8e-26  Score=182.80  Aligned_cols=170  Identities=18%  Similarity=0.147  Sum_probs=123.1

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc------chh---chh
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ------ERY---RAV   93 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~---~~~   93 (237)
                      ......++|+|+|.+|+|||||+++|++..+.....+..+.......+...+  +.+.||||||.      +..   ...
T Consensus        24 ~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~  101 (228)
T 2qu8_A           24 SINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT  101 (228)
T ss_dssp             SCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH
Confidence            3345689999999999999999999999887543334444445555555565  56889999998      331   122


Q ss_pred             hHhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHH---HHHHHHHHcC--Ce
Q 026548           94 TSAYYRGALGAVVVYDITKRQSFD--HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAE---DAVEFAEDQG--LF  166 (237)
Q Consensus        94 ~~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~  166 (237)
                      +..++..+|++|+|||++++.++.  ....|+..+.... .++|++||+||+|+...+.+..+   ...+++...+  ++
T Consensus       102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
T 2qu8_A          102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK  180 (228)
T ss_dssp             HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred             HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce
Confidence            345578899999999999987654  2335555554432 37999999999999876666554   4566777777  88


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q 026548          167 FSEASALNGDNVDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       167 ~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~  195 (237)
                      +++|||++|.|++++|++|++.+.+....
T Consensus       181 ~~~~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          181 FSSFSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998776643

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=8.7e-27  Score=175.61  Aligned_cols=153  Identities=19%  Similarity=0.214  Sum_probs=117.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc------hhhHhhhc--
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR------AVTSAYYR--   99 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~--   99 (237)
                      .++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||++.+.      .+...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            47999999999999999999998876555556655666666666776  468899999988764      33455554  


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      .+|++++|+|+++.+   ....|+..+..   .++|+++|+||+|+...+.+.. +..+++..++++++++||++|.|++
T Consensus        81 ~~~~~i~v~D~~~~~---~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALE---RNLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHH---HHHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchh---HhHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            899999999998854   34457766655   3799999999999865444432 3667888889999999999999999


Q ss_pred             HHHHHHHHHH
Q 026548          180 TAFFRLLQEI  189 (237)
Q Consensus       180 ~~~~~l~~~i  189 (237)
                      ++|+++.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.94  E-value=7.7e-28  Score=194.03  Aligned_cols=167  Identities=27%  Similarity=0.339  Sum_probs=123.6

Q ss_pred             CCCCceeeeEEEEcCC---------CCcHHHHHHHHhc---CCCcCCCCCCc-ceeEEEEE--------------EEECC
Q 026548           22 PDKIDYVFKVVVIGDS---------AVGKSQILSRFTK---NEFFFDSKSTI-GVEFQTRT--------------VTING   74 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~---------~sGKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~   74 (237)
                      +......+||+|+|.+         |+|||||+++|++   ..+...+.+++ +.++....              ..+++
T Consensus        13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   92 (255)
T 3c5h_A           13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC   92 (255)
T ss_dssp             TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred             CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence            3455667999999999         9999999999999   45555555543 22222111              12456


Q ss_pred             EEEEEEEEe-----------------------CCCcchhchhhHhhhc---------------------CCcEEEEEEEC
Q 026548           75 KIIKAQIWD-----------------------TAGQERYRAVTSAYYR---------------------GALGAVVVYDI  110 (237)
Q Consensus        75 ~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~~ilv~d~  110 (237)
                      ..+.+.|||                       ++|++.+..++..+++                     ++|++|+|||+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            778899999                       6666667777777766                     79999999999


Q ss_pred             CCh--hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          111 TKR--QSFDHVARWVEELRAH-ADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       111 ~~~--~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      +++  .+++.+..|+..+... ...++|++||+||+|+...+.+  +++.+++.. .++++++|||++|.|++++|++|+
T Consensus       173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~  250 (255)
T 3c5h_A          173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV  250 (255)
T ss_dssp             BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence            998  9999999999988765 2357999999999998654433  567777776 478999999999999999999998


Q ss_pred             HHHH
Q 026548          187 QEIY  190 (237)
Q Consensus       187 ~~i~  190 (237)
                      +.+.
T Consensus       251 ~~l~  254 (255)
T 3c5h_A          251 QLID  254 (255)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8763

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=2.1e-26  Score=190.39  Aligned_cols=162  Identities=20%  Similarity=0.318  Sum_probs=128.2

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcC---CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh-----chhhHhhh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF---DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY-----RAVTSAYY   98 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~   98 (237)
                      ..+||+|+|++|+|||||+++|+++....   .+.+|.+..+  ..+.+++ .+.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            36899999999999999999999874322   3345555444  3445544 478999999999988     67888899


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC--CcC----CCHHHHHHHHHHcC---CeE
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHA--DSSIRIILIGNKSDLVD--MRA----VSAEDAVEFAEDQG---LFF  167 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  167 (237)
                      +++|++|+|||++++.+++.+..|...+....  ..++|++||+||+|+.+  .+.    ...+++.+++..+|   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877766554432  25799999999999876  333    45577888899887   689


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548          168 SEASALNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       168 ~~~Sa~~~~gi~~~~~~l~~~i~~~  192 (237)
                      ++|||++ .++.++|..+++.+...
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li~~  182 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLIPN  182 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred             EEeeecC-ChHHHHHHHHHHHHcCC
Confidence            9999999 89999999888765433

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.94  E-value=6.6e-26  Score=172.15  Aligned_cols=158  Identities=18%  Similarity=0.183  Sum_probs=120.6

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++.  .+.+|||||++.+..++..++..+|++|
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            35689999999999999999999999887777677666666667777874  4679999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc-------C--CeEEEEcCCCCC
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ-------G--LFFSEASALNGD  176 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~  176 (237)
                      +|||+++........ ++..+   ...++|+++|+||+|+...   ..+.........       +  +++++|||++|.
T Consensus        84 ~v~d~~~~~~~~~~~-~l~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (178)
T 2lkc_A           84 LVVAADDGVMPQTVE-AINHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE  156 (178)
T ss_dssp             EEEETTCCCCHHHHH-HHHHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred             EEEECCCCCcHHHHH-HHHHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence            999998843222221 11222   2247999999999998652   233333333322       2  479999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q 026548          177 NVDTAFFRLLQEIYGA  192 (237)
Q Consensus       177 gi~~~~~~l~~~i~~~  192 (237)
                      |++++|++|++.+...
T Consensus       157 gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          157 GLDHLLEMILLVSEME  172 (178)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhhhhh
Confidence            9999999998876543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.94  E-value=1.8e-25  Score=175.09  Aligned_cols=157  Identities=19%  Similarity=0.181  Sum_probs=113.0

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCE-EEEEEEEeCCCcchhch-hhHhhhcCCcEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK-IIKAQIWDTAGQERYRA-VTSAYYRGALGA  104 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~  104 (237)
                      ..++|+|+|++|+|||||+++|++..+...+. +.+..+..  +.+++. .+.+.||||||++.+.. ++..+++.+|++
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            46899999999999999999999988776664 33334332  555533 47799999999999988 788899999999


Q ss_pred             EEEEECCChh-hHHHHHH-HHHHHHHh--cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHH----H---------------
Q 026548          105 VVVYDITKRQ-SFDHVAR-WVEELRAH--ADSSIRIILIGNKSDLVDMRAVSAEDAVEFA----E---------------  161 (237)
Q Consensus       105 ilv~d~~~~~-s~~~~~~-~~~~~~~~--~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~----~---------------  161 (237)
                      |+|||+++.. ++..... |...+...  ...++|++||+||+|+.....  .+...+..    .               
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHHhccchhccccccC
Confidence            9999999853 4555544 44444332  235799999999999975432  22111111    1               


Q ss_pred             ------------------Hc--CCeEEEEcCCCC------CCHHHHHHHHHHH
Q 026548          162 ------------------DQ--GLFFSEASALNG------DNVDTAFFRLLQE  188 (237)
Q Consensus       162 ------------------~~--~~~~~~~Sa~~~------~gi~~~~~~l~~~  188 (237)
                                        .+  +++|++|||++|      .||+++|++|.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                              11  567999999999      9999999999875

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=186.92  Aligned_cols=159  Identities=21%  Similarity=0.388  Sum_probs=120.9

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...++|+|+|.+|+|||||+++|.+..+.... +|.+..  ...+...+  +.+.||||||++.+..++..+++.+|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            35679999999999999999999988865443 454433  33444555  67889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVD  179 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  179 (237)
                      +|||++++.++..+..|+..+..... .++|++||+||+|+.+..  ..+++.....     ..++++++|||++|.||+
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            99999999999999888877655432 589999999999997633  3333333222     124569999999999999


Q ss_pred             HHHHHHHHHHHH
Q 026548          180 TAFFRLLQEIYG  191 (237)
Q Consensus       180 ~~~~~l~~~i~~  191 (237)
                      ++|++|++.+.+
T Consensus       316 el~~~l~~~l~~  327 (329)
T 3o47_A          316 EGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999987754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=1.2e-25  Score=172.35  Aligned_cols=158  Identities=18%  Similarity=0.202  Sum_probs=125.7

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc------hhhHhhhc-
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR------AVTSAYYR-   99 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-   99 (237)
                      ..++|+|+|++|+|||||+++|.+..+.....++.+.+.....+..++  +.+.+|||||++.+.      .++..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            468999999999999999999999776555557777777777777777  568899999988774      34555554 


Q ss_pred             -CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548          100 -GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus       100 -~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                       .+|++++|+|+++   ++....|+..+..   .+.|+++|+||+|+...+.+. +...+++..++++++++||+++.|+
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence             5999999999875   4556677777655   478999999999986544443 3567788888999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 026548          179 DTAFFRLLQEIYGAV  193 (237)
Q Consensus       179 ~~~~~~l~~~i~~~~  193 (237)
                      +++|+++++.+.+..
T Consensus       157 ~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          157 EELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999998876543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.93  E-value=7.8e-26  Score=173.51  Aligned_cols=157  Identities=22%  Similarity=0.255  Sum_probs=118.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC-----------cchhchhhHhh
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG-----------QERYRAVTSAY   97 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~~   97 (237)
                      ++|+|+|++|+|||||+++|.+..+...+.++.+....  .+.+.    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            68999999999999999999999877666666554332  33333    477999999           66777777777


Q ss_pred             hcC-CcEEEEEEECCChhhHHHH-HHHHHH--------H-HHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe
Q 026548           98 YRG-ALGAVVVYDITKRQSFDHV-ARWVEE--------L-RAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF  166 (237)
Q Consensus        98 ~~~-~d~~ilv~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~  166 (237)
                      ++. +++++++|++.+..++..+ ..|...        + ......++|+++|+||+|+....   .+...+++..++++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            776 7776677777666777665 556542        1 22222579999999999987643   56677888888864


Q ss_pred             -------EEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548          167 -------FSEASALNGDNVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       167 -------~~~~Sa~~~~gi~~~~~~l~~~i~~~~~  194 (237)
                             +++|||++|.|++++|++|.+.+.+...
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence                   7999999999999999999998876543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.93  E-value=1.3e-25  Score=173.23  Aligned_cols=160  Identities=19%  Similarity=0.185  Sum_probs=109.7

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC----------cchhch
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG----------QERYRA   92 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~   92 (237)
                      .+....++|+|+|++|+|||||+++|++..+...+.++.+.+.......+++   .+.+|||||          ++.+..
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (195)
T 1svi_A           18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH
Confidence            3445689999999999999999999999876555445544444444444554   578999999          677777


Q ss_pred             hhHhhhcCC---cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCH--HHHHH-HHHHcCCe
Q 026548           93 VTSAYYRGA---LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSA--EDAVE-FAEDQGLF  166 (237)
Q Consensus        93 ~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~  166 (237)
                      ++..+++.+   |++++|+|+++..+..... ++..+..   .++|+++|+||+|+....++..  +++.+ +....+++
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence            788887766   9999999999876665532 2222222   4789999999999976443321  22222 22234578


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHH
Q 026548          167 FSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       167 ~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      ++++||+++.|++++|++|.+.+
T Consensus       171 ~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          171 LILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEccCCCCHHHHHHHHHHHh
Confidence            99999999999999999998765

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.93  E-value=1.5e-26  Score=190.41  Aligned_cols=160  Identities=21%  Similarity=0.218  Sum_probs=122.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcC---CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch---hhHhhhcCCcE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFF---DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA---VTSAYYRGALG  103 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~  103 (237)
                      ||+++|+.|+|||||++++.++..+.   ...+|.+.++..    ++ ..++++||||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            69999999999999999988664432   245777766643    22 237899999999999964   46889999999


Q ss_pred             EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-------cCCCHHHHHHHHHH----cCCeEEEE
Q 026548          104 AVVVYDITKR--QSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM-------RAVSAEDAVEFAED----QGLFFSEA  170 (237)
Q Consensus       104 ~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  170 (237)
                      +|+|||+++.  .+...+..|+..+.... .++|++|++||+|+...       +++..+++.++++.    +++.|++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999997  33344444455544443 58999999999999753       34555666677775    67899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHhhhcc
Q 026548          171 SALNGDNVDTAFFRLLQEIYGAVSKK  196 (237)
Q Consensus       171 Sa~~~~gi~~~~~~l~~~i~~~~~~~  196 (237)
                      ||++ .+|.++|..+++.+..+.+..
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~~~l  179 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPELSFL  179 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTHHHH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhHHHH
Confidence            9998 689999999998877766543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=7.6e-25  Score=176.65  Aligned_cols=155  Identities=17%  Similarity=0.213  Sum_probs=122.9

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch------hhHhhh--
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA------VTSAYY--   98 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--   98 (237)
                      ..++|+|+|++|+|||||+|+|++..+.....++++.+.....+...+  +.+.||||||...+..      +...++  
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            468999999999999999999999887655556666666666666666  5788999999887764      234555  


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                      ..+|++|+|+|+++.+..   ..|...+..   .++|+++|+||+|+...+.+.. +..+++..++++++++||++|.|+
T Consensus        82 ~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi  154 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGL  154 (258)
T ss_dssp             SCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTH
T ss_pred             cCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCH
Confidence            589999999999986543   345555554   4799999999999865444432 367788889999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 026548          179 DTAFFRLLQEIY  190 (237)
Q Consensus       179 ~~~~~~l~~~i~  190 (237)
                      +++|+++.+.+.
T Consensus       155 ~el~~~i~~~~~  166 (258)
T 3a1s_A          155 EELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999988654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=1.3e-25  Score=170.38  Aligned_cols=152  Identities=24%  Similarity=0.248  Sum_probs=115.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh--------hHhhh
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV--------TSAYY   98 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~   98 (237)
                      ..+|+|+|++|+|||||+++|.+..... ...++.+.++....+.+++.  .+.+|||||.+.+...        ...++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            4799999999999999999999876532 23355556666777888874  4779999997653211        12357


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                      +.+|++++|||+++..+++ ...|+..+......++|+++|+||+|+.....       +++...+.++++|||++|.|+
T Consensus        82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv  153 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGV  153 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTH
T ss_pred             HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCH
Confidence            8999999999999987765 34677777666556799999999999854211       112234678999999999999


Q ss_pred             HHHHHHHHHHH
Q 026548          179 DTAFFRLLQEI  189 (237)
Q Consensus       179 ~~~~~~l~~~i  189 (237)
                      +++|++|.+.+
T Consensus       154 ~~l~~~l~~~~  164 (172)
T 2gj8_A          154 DVLRNHLKQSM  164 (172)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999988765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.92  E-value=7.3e-25  Score=163.59  Aligned_cols=150  Identities=16%  Similarity=0.140  Sum_probs=107.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch-------hchhhHhhhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER-------YRAVTSAYYRG  100 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~  100 (237)
                      .||+|+|++|+|||||+++|.+..+.. ...++.+.+.....+..++.  .+.+|||||...       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            589999999999999999999887542 23344455566666777774  578999999877       34456678899


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHH
Q 026548          101 ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNVD  179 (237)
Q Consensus       101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  179 (237)
                      +|++|+|||+++..+...  .|+..+...  .++|+++|+||+|+....    ++..+++ .+++ +++++||++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999998543322  222222221  368999999999997542    2334455 5677 79999999999999


Q ss_pred             HHHHHHHHHH
Q 026548          180 TAFFRLLQEI  189 (237)
Q Consensus       180 ~~~~~l~~~i  189 (237)
                      ++|+++.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999988753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.92  E-value=4.9e-24  Score=176.18  Aligned_cols=162  Identities=17%  Similarity=0.105  Sum_probs=126.3

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEEC-CEEEEEEEEeCCCcchhc---------
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTIN-GKIIKAQIWDTAGQERYR---------   91 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~---------   91 (237)
                      .+....-.|+++|.+|+|||||+|+|++.++..... +..+..........+ +  .++.||||||...+.         
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~   82 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSM   82 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHH
Confidence            445567799999999999999999999998765332 334444444445555 5  578899999985543         


Q ss_pred             -hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--CeEE
Q 026548           92 -AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--LFFS  168 (237)
Q Consensus        92 -~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~  168 (237)
                       ..+..+++.+|++++|+|+++..+......|+..+..   .++|+++|+||+|+........+...++...++  .+++
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~  159 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV  159 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence             5566788999999999999998888887777777665   368999999999987444455666777777775  7799


Q ss_pred             EEcCCCCCCHHHHHHHHHHHH
Q 026548          169 EASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       169 ~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      ++||++|.|++++|+++.+.+
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHS
T ss_pred             EEeCCCCCCHHHHHHHHHHhC
Confidence            999999999999998888766

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.92  E-value=1.8e-24  Score=166.42  Aligned_cols=161  Identities=17%  Similarity=0.201  Sum_probs=114.9

Q ss_pred             CCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC----------cchh
Q 026548           21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG----------QERY   90 (237)
Q Consensus        21 ~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~   90 (237)
                      ...+....++|+|+|++|+|||||+++|++..+.. ..++.+.+........+.   .+.+|||||          .+.+
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~   91 (195)
T 3pqc_A           16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLW   91 (195)
T ss_dssp             TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHH
T ss_pred             hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHH
Confidence            33455667899999999999999999999987433 334443333333333443   467999999          6667


Q ss_pred             chhhHhhhcCC---cEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--CCCHHHHHHHHHHc
Q 026548           91 RAVTSAYYRGA---LGAVVVYDITKRQSF--DHVARWVEELRAHADSSIRIILIGNKSDLVDMR--AVSAEDAVEFAEDQ  163 (237)
Q Consensus        91 ~~~~~~~~~~~---d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~--~~~~~~~~~~~~~~  163 (237)
                      ..++..+++.+   |++++|+|+++..+.  ..+..|+..      .++|+++|+||+|+....  ....++..+++...
T Consensus        92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~  165 (195)
T 3pqc_A           92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY  165 (195)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence            77777777655   999999999875333  233334433      268999999999986432  22334555666654


Q ss_pred             C-CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548          164 G-LFFSEASALNGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       164 ~-~~~~~~Sa~~~~gi~~~~~~l~~~i~~  191 (237)
                      + ++++++||++|.|++++|++|.+.+.+
T Consensus       166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          166 GEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            4 689999999999999999999987743

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.91  E-value=2.1e-25  Score=197.33  Aligned_cols=165  Identities=20%  Similarity=0.224  Sum_probs=125.8

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEE------EEE--CCEEEEEEEEeCCCcchhchhhH
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRT------VTI--NGKIIKAQIWDTAGQERYRAVTS   95 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~Dt~G~~~~~~~~~   95 (237)
                      .....+||+++|.+|+|||||+++|.+..+...+.++.+.++..+.      +.+  ++..+.+.+|||||++.+..+..
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3456799999999999999999999999988777788777766542      112  22346789999999999999999


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548           96 AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG  175 (237)
Q Consensus        96 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  175 (237)
                      .+++.+|++|+|||+++.   +.+..|+..+.... .+.|++||+||+|+...+.+..+...+++...++++++|||++|
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999999765   45677888887775 47999999999999887788888888888899999999999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 026548          176 DNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       176 ~gi~~~~~~l~~~i~~~  192 (237)
                      .|++++|+++.+.+.+.
T Consensus       193 ~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             --CTTHHHHHHHHHTCT
T ss_pred             cCHHHHHHHHHHHHhcc
Confidence            99999999998887654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.91  E-value=1.2e-24  Score=175.34  Aligned_cols=151  Identities=16%  Similarity=0.132  Sum_probs=119.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch----------hhHhhh
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA----------VTSAYY   98 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~   98 (237)
                      .+|+|+|.+|+|||||+|+|.+........++++.+.....+..++.  .+.||||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999998866666678888888888888885  678999999876653          455666


Q ss_pred             --cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 026548           99 --RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD  176 (237)
Q Consensus        99 --~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  176 (237)
                        ..+|++|+|+|+++.+....+..   .+..   .++|+++|+||+|+........ ....+...++++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~---~l~~---~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTS---QLFE---LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHH---HHTT---SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHH---HHHH---cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              89999999999998655444333   2322   4799999999999865433322 2455777889999999999999


Q ss_pred             CHHHHHHHHHHH
Q 026548          177 NVDTAFFRLLQE  188 (237)
Q Consensus       177 gi~~~~~~l~~~  188 (237)
                      |++++|+++.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999988765

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.91  E-value=9.7e-25  Score=177.15  Aligned_cols=153  Identities=18%  Similarity=0.176  Sum_probs=116.5

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc------hhhHhhhc-
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR------AVTSAYYR-   99 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-   99 (237)
                      ..++|+++|++|+|||||+|+|++........++++.+.  ....+.. .+.+.+|||||...+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            357999999999999999999998765444445544443  3333444 4678899999988775      34556665 


Q ss_pred             -CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548          100 -GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus       100 -~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                       .+|++|+|||+++.+.   ...|...+..   .++|+++++||+|+...+.+. .+..+++..++++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLER---NLYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHh---HHHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             6999999999988643   3456666555   479999999999986544443 3567788889999999999999999


Q ss_pred             HHHHHHHHHHH
Q 026548          179 DTAFFRLLQEI  189 (237)
Q Consensus       179 ~~~~~~l~~~i  189 (237)
                      +++|+++.+.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999987754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=6.7e-24  Score=172.42  Aligned_cols=156  Identities=20%  Similarity=0.183  Sum_probs=123.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch------hhHhhh--c
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA------VTSAYY--R   99 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~   99 (237)
                      .++|+|+|++|+|||||+++|.+..+.....++.+.+.....+..++.  .+.+|||||...+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            579999999999999999999998876666678888888778888874  478999999887765      455555  7


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      .+|++++|+|+++..   ....|+..+...  ..+|+++|+||+|+........+ ...+...++++++++||++|.|++
T Consensus        81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           81 NADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             CCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             CCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence            899999999998853   333444454443  13999999999998654333332 667788899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 026548          180 TAFFRLLQEIYG  191 (237)
Q Consensus       180 ~~~~~l~~~i~~  191 (237)
                      ++|+.+.+.+..
T Consensus       155 ~l~~~i~~~~~~  166 (271)
T 3k53_A          155 ELKRMIALMAEG  166 (271)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999887644

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.90  E-value=2.8e-24  Score=174.86  Aligned_cols=154  Identities=13%  Similarity=0.134  Sum_probs=118.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch----------hhHhh
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA----------VTSAY   97 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~   97 (237)
                      .++|+|+|.+|+|||||+|+|++..+.....++++.+.....+...+.  .+.||||||...+..          .+..+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            579999999999999999999998876566677777777777777663  567999999877652          22333


Q ss_pred             h--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 026548           98 Y--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNG  175 (237)
Q Consensus        98 ~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  175 (237)
                      +  +.+|++|+|+|+++.+...   .|...+...   ++|+++|+||+|+....... .....+...++++++++||++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNL---YLTLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHH---HHHHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred             HhhcCCCEEEEEecCCChHHHH---HHHHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence            3  7999999999999865443   344444443   69999999999986533321 1245677788999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQEIY  190 (237)
Q Consensus       176 ~gi~~~~~~l~~~i~  190 (237)
                      .|++++|+++.+.+.
T Consensus       154 ~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          154 RGIEALKLAIDRYKA  168 (274)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999988876543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.90  E-value=3.5e-24  Score=168.72  Aligned_cols=166  Identities=15%  Similarity=0.132  Sum_probs=110.0

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCc-C-CCCCCcceeEEEEEEEEC-CEEEEEEEEeCCCc----------c
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFF-F-DSKSTIGVEFQTRTVTIN-GKIIKAQIWDTAGQ----------E   88 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~----------~   88 (237)
                      ..+....++|+|+|.+|+|||||+++|++.... . ...+..+...  ....+. .....+.||||||.          +
T Consensus        23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~  100 (223)
T 4dhe_A           23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKA  100 (223)
T ss_dssp             GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHH
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHH
Confidence            344556789999999999999999999998732 2 2223323332  233333 22256889999994          4


Q ss_pred             hhchhhHhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHHHHH-
Q 026548           89 RYRAVTSAYYRG---ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEFAED-  162 (237)
Q Consensus        89 ~~~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~~~~-  162 (237)
                      .+..++..+++.   +|++|+|+|+++..+. ....|+..+..   .++|+++|+||+|+......  ..+...+.... 
T Consensus       101 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~  176 (223)
T 4dhe_A          101 HWEQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY  176 (223)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence            445566666655   8889999999875432 22334444443   46899999999998653221  11222222222 


Q ss_pred             ------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q 026548          163 ------QGLFFSEASALNGDNVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       163 ------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~  193 (237)
                            .+.+++++||++|.|++++|++|.+.+....
T Consensus       177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence                  4567999999999999999999988875543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=4.6e-24  Score=184.32  Aligned_cols=188  Identities=18%  Similarity=0.192  Sum_probs=128.6

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc----------chhchhh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ----------ERYRAVT   94 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~   94 (237)
                      +..++|+++|.+|+|||||+|+|++.... ....++++.+.....+..++.  .+.||||||+          +.|..+.
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            45799999999999999999999988764 333455556666666777875  4789999997          5555444


Q ss_pred             H-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH-HHHH----cCCeEE
Q 026548           95 S-AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE-FAED----QGLFFS  168 (237)
Q Consensus        95 ~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~  168 (237)
                      . .+++.+|++|+|||++++.+.++. .|+..+..   .++|++||+||+|+.+......++..+ +...    .+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            3 478899999999999998777665 56666654   479999999999997655544444333 2232    367899


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHhhhcc------ccccCCCccCCCCCCCCCccccc
Q 026548          169 EASALNGDNVDTAFFRLLQEIYGAVSKK------ELECGNGKVDGPPMLAGSKIDVI  219 (237)
Q Consensus       169 ~~Sa~~~~gi~~~~~~l~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  219 (237)
                      ++||++|.|++++|+.+.+.+.......      ++........+||...++++++.
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~~i~  383 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIY  383 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEE
T ss_pred             EEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCccCCcceeEE
Confidence            9999999999999999988776533211      11111112245666666666553

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.89  E-value=3.3e-22  Score=168.50  Aligned_cols=163  Identities=19%  Similarity=0.194  Sum_probs=124.2

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc---------hhhHh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR---------AVTSA   96 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~   96 (237)
                      ...++|+++|.+|+|||||+++|.+........+..+.......+...+  ..+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4578999999999999999999998875433334444444444555555  568899999965432         12234


Q ss_pred             hhcCCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCC
Q 026548           97 YYRGALGAVVVYDITKRQ--SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN  174 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  174 (237)
                      +...+|++++|+|+++..  ++.....|+..+..... +.|+++|+||+|+.....  .++..+++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence            556799999999998876  67777888888877653 799999999999875332  2456667777889999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhh
Q 026548          175 GDNVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       175 ~~gi~~~~~~l~~~i~~~~  193 (237)
                      |.|++++|++|.+.+....
T Consensus       320 g~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHH
Confidence            9999999999999886543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=3e-24  Score=168.56  Aligned_cols=145  Identities=17%  Similarity=0.280  Sum_probs=105.8

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC---CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcC
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD---SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG  100 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~  100 (237)
                      .....++|+|+|++|+|||||+++|.+..+...   +.++.+..+         ..+.+.+|||||++.+...+..+++.
T Consensus         8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~   78 (218)
T 1nrj_B            8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT   78 (218)
T ss_dssp             --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHh
Confidence            345578999999999999999999998876542   223332222         22468899999999999888888877


Q ss_pred             ----CcEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCcCCC------HHHHHHHHHHcCC
Q 026548          101 ----ALGAVVVYDIT-KRQSFDHVARWVEELRAH----ADSSIRIILIGNKSDLVDMRAVS------AEDAVEFAEDQGL  165 (237)
Q Consensus       101 ----~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~vvv~nK~D~~~~~~~~------~~~~~~~~~~~~~  165 (237)
                          +|++|+|||++ ++.++..+..|+..+...    ...++|++||+||+|+.....+.      .++...++...++
T Consensus        79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~  158 (218)
T 1nrj_B           79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK  158 (218)
T ss_dssp             HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence                89999999999 888888888888877654    33589999999999997654432      3456667777778


Q ss_pred             eEEEEcCCCCCC
Q 026548          166 FFSEASALNGDN  177 (237)
Q Consensus       166 ~~~~~Sa~~~~g  177 (237)
                      .++++||+++.+
T Consensus       159 ~~~~~Sa~~~~~  170 (218)
T 1nrj_B          159 SLNEVERKINEE  170 (218)
T ss_dssp             HHHC--------
T ss_pred             cccccccccccc
Confidence            899999998875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.89  E-value=2.5e-23  Score=180.67  Aligned_cols=163  Identities=20%  Similarity=0.169  Sum_probs=122.2

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCC----------cchhchh
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG----------QERYRAV   93 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~   93 (237)
                      ....++|+++|.+|+|||||+++|.+.... ....++++.+.....+..++.  .+.||||||          ++.+..+
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            345789999999999999999999977532 333355555555566677775  678999999          6777665


Q ss_pred             hH-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc-----CCeE
Q 026548           94 TS-AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ-----GLFF  167 (237)
Q Consensus        94 ~~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~  167 (237)
                      .. .+++.+|++|+|+|+++..+. ....|...+..   .++|++||+||+|+...+....+++.+.+...     ++++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence            54 478999999999999885442 23345555544   47999999999999876677677777777654     5789


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHhh
Q 026548          168 SEASALNGDNVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       168 ~~~Sa~~~~gi~~~~~~l~~~i~~~~  193 (237)
                      +++||++|.|++++|+++.+.+....
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence            99999999999999999988775544

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.89  E-value=1e-22  Score=176.96  Aligned_cols=157  Identities=19%  Similarity=0.151  Sum_probs=99.2

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhh--------Hhh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVT--------SAY   97 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~   97 (237)
                      ..++|+|+|.+|+|||||+|+|.+.... ....++++.+.....+.+++  +.+.||||||...+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            3578999999999999999999988643 33345666666667777888  468899999987765443        336


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548           98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN  177 (237)
Q Consensus        98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  177 (237)
                      ++.+|++|+|||++++.++..+..+...+....  ++|+++|+||+|+......   ...++......+++++||++|.|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence            789999999999999877653333333333322  6999999999999764332   22334443246899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 026548          178 VDTAFFRLLQEIY  190 (237)
Q Consensus       178 i~~~~~~l~~~i~  190 (237)
                      ++++|++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988775

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.88  E-value=1.4e-23  Score=179.60  Aligned_cols=165  Identities=16%  Similarity=0.134  Sum_probs=118.9

Q ss_pred             ccCCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh----
Q 026548           19 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV----   93 (237)
Q Consensus        19 ~~~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----   93 (237)
                      .|...+....++|+|+|..|+|||||+++|++..+.. ...++.+.+.....+.+.+.. .+.||||||++.+..+    
T Consensus        25 sm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~  103 (423)
T 3qq5_A           25 TMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLR  103 (423)
T ss_dssp             CCCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCC
T ss_pred             ccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHH
Confidence            3445566778999999999999999999999988643 333555556666666666542 6889999998877554    


Q ss_pred             ---hHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEE
Q 026548           94 ---TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEA  170 (237)
Q Consensus        94 ---~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                         ...++..+|++|+|||++..   .....|+..+...   ++|+++|+||+|+......  +...+++..++++++++
T Consensus       104 ~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~v  175 (423)
T 3qq5_A          104 VEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLV  175 (423)
T ss_dssp             HHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCC
T ss_pred             HHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEE
Confidence               35578999999999999433   2345666666654   7999999999999765443  55666777788999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHh
Q 026548          171 SALNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       171 Sa~~~~gi~~~~~~l~~~i~~~  192 (237)
                      ||++|.|++++|++|.+.+.+.
T Consensus       176 SAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          176 SALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             SSCCTTSTTTHHHHHHHHSCCC
T ss_pred             ECCCCCCHHHHHHHHHHhhhhh
Confidence            9999999999999998887544

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.88  E-value=4.6e-22  Score=163.69  Aligned_cols=154  Identities=20%  Similarity=0.176  Sum_probs=108.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcch--------hchhhHhh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQER--------YRAVTSAY   97 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~   97 (237)
                      +..+|+|+|.+|+|||||+|+|++..+.... .+.++.......+..++  .++.||||||...        +......+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            3467999999999999999999999876432 23333333333344444  5788999999765        34455677


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc-C-CeEEEEcCCC
Q 026548           98 YRGALGAVVVYDITKRQSFDHVARWV-EELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ-G-LFFSEASALN  174 (237)
Q Consensus        98 ~~~~d~~ilv~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~  174 (237)
                      ++.+|++++|||++++.+..  ..|+ ..+.... .++|+++|+||+|+.....    ...+.+..+ + .+++++||++
T Consensus        84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~  156 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD  156 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred             HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence            89999999999998864433  2343 3444332 4799999999999865322    023333333 3 4689999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 026548          175 GDNVDTAFFRLLQEI  189 (237)
Q Consensus       175 ~~gi~~~~~~l~~~i  189 (237)
                      |.|++++|+.|.+.+
T Consensus       157 g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          157 ERQVAELKADLLALM  171 (301)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhc
Confidence            999999998876644

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.87  E-value=6.1e-22  Score=172.18  Aligned_cols=154  Identities=20%  Similarity=0.245  Sum_probs=117.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc-hhch--------hhHhh
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE-RYRA--------VTSAY   97 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~~--------~~~~~   97 (237)
                      .++|+|+|.+|+|||||+|+|.+.... ....++++.++....+.+++.  .+.||||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            479999999999999999999988654 333466666777777778874  57899999987 5432        23457


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548           98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN  177 (237)
Q Consensus        98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  177 (237)
                      ++.+|++|+|||++++.+++... ++..+     .+.|+++|+||+|+...  ...+++.+++. .+++++++||++|.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            88999999999999887765543 22322     36899999999999653  34455544432 446899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 026548          178 VDTAFFRLLQEIYGA  192 (237)
Q Consensus       178 i~~~~~~l~~~i~~~  192 (237)
                      ++++|++|.+.+...
T Consensus       392 i~eL~~~l~~~~~~~  406 (482)
T 1xzp_A          392 LEKLEESIYRETQEI  406 (482)
T ss_dssp             HHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999987654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.87  E-value=1.9e-21  Score=162.89  Aligned_cols=126  Identities=16%  Similarity=0.243  Sum_probs=103.4

Q ss_pred             EEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhcC-CCCc
Q 026548           67 TRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARWVEELRAHAD-SSIR  135 (237)
Q Consensus        67 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~p  135 (237)
                      ...+.+++  +.+.+||++|++.++..|..++++++++|+|||+++          ..++.....|+..+..... .++|
T Consensus       185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p  262 (353)
T 1cip_A          185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS  262 (353)
T ss_dssp             EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred             EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence            34455565  778999999999999999999999999999999998          4568888888888766432 5799


Q ss_pred             EEEEEeCCCCCCCc---------------CCCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          136 IILIGNKSDLVDMR---------------AVSAEDAVEFAE-----------DQGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       136 ~vvv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      ++|++||+|+...+               ....+++.+++.           ..++.+++|||+++.||+++|.++.+.+
T Consensus       263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i  342 (353)
T 1cip_A          263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  342 (353)
T ss_dssp             EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence            99999999985322               356788888887           3567899999999999999999999988


Q ss_pred             HHhhh
Q 026548          190 YGAVS  194 (237)
Q Consensus       190 ~~~~~  194 (237)
                      ....-
T Consensus       343 ~~~~l  347 (353)
T 1cip_A          343 IKNNL  347 (353)
T ss_dssp             HHHC-
T ss_pred             HHHHH
Confidence            76543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.87  E-value=2.6e-22  Score=167.54  Aligned_cols=158  Identities=19%  Similarity=0.184  Sum_probs=119.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----hchhhHhhhc---CC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----YRAVTSAYYR---GA  101 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~~---~~  101 (237)
                      .+|+|+|.+|||||||+++|.+........+..+.......+.+++. ..+.||||||...    +..+...+++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            46899999999999999999987644333333333444444555531 3678999999543    3334455544   59


Q ss_pred             cEEEEEEECCC---hhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--CeEEEEcCCC
Q 026548          102 LGAVVVYDITK---RQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--LFFSEASALN  174 (237)
Q Consensus       102 d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  174 (237)
                      |++|+|||+++   .++++.+..|+..+..+..  .++|++||+||+|+...    .+...++...+.  .+++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7888999999999887652  57999999999998652    234566667666  6899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 026548          175 GDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       175 ~~gi~~~~~~l~~~i~~  191 (237)
                      +.|++++|++|.+.+.+
T Consensus       314 g~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          314 REGLRELLFEVANQLEN  330 (342)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999887743

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=6.6e-21  Score=151.88  Aligned_cols=165  Identities=12%  Similarity=0.144  Sum_probs=107.2

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCC--CcceeEEEEEEEECCEEEEEEEEeCCCcc-----------h
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKS--TIGVEFQTRTVTINGKIIKAQIWDTAGQE-----------R   89 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~   89 (237)
                      ......++|+|+|.+|+|||||+|+|++..+.....+  +.+.......+.+++.  .+.||||||..           .
T Consensus        24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~  101 (239)
T 3lxx_A           24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKE  101 (239)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHH
Confidence            3445679999999999999999999999887655544  4555566666777774  57799999943           3


Q ss_pred             hchhhHhhhcCCcEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC------HHHHHHHHH
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKRQS--FDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS------AEDAVEFAE  161 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~------~~~~~~~~~  161 (237)
                      +...+...++++|++|+|+|+++...  ...+..+...+...  ...|++||+||+|+.....+.      .+..++++.
T Consensus       102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence            44444555678899999999876333  22233333322222  246999999999986543322      235777888


Q ss_pred             HcCCeEEEEcCCCC-----CCHHHHHHHHHHHHHH
Q 026548          162 DQGLFFSEASALNG-----DNVDTAFFRLLQEIYG  191 (237)
Q Consensus       162 ~~~~~~~~~Sa~~~-----~gi~~~~~~l~~~i~~  191 (237)
                      ..+..++.++...+     .++.++|..+.+.+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            88888888876643     5777777766665543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=2.6e-21  Score=167.25  Aligned_cols=152  Identities=22%  Similarity=0.276  Sum_probs=105.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch---------hchhhHhhh
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER---------YRAVTSAYY   98 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~   98 (237)
                      .+|+++|.+|+|||||+|+|++..... ...++++.++....+.+++.  .+.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            479999999999999999999887543 34466666677777788885  467999999664         234556788


Q ss_pred             cCCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHH-HHHHHHcCC-eEEEEcCCC
Q 026548           99 RGALGAVVVYDITKRQSFDH--VARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDA-VEFAEDQGL-FFSEASALN  174 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~  174 (237)
                      +.+|++|+|+|+++..+..+  +..|+.   .   .++|+++|+||+|+...  . .... .++. .+++ .++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            99999999999987544332  333333   2   26899999999998532  0 1222 3443 4566 689999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q 026548          175 GDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       175 ~~gi~~~~~~l~~~i~~~  192 (237)
                      |.|++++|+++.+.+.+.
T Consensus       150 g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhcccc
Confidence            999999999999887643

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.85  E-value=2.4e-20  Score=159.57  Aligned_cols=157  Identities=16%  Similarity=0.138  Sum_probs=112.8

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEE---------------------E---CCEEEEEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVT---------------------I---NGKIIKAQ   80 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~~~~~~~~   80 (237)
                      ....++|+++|++|+|||||+++|++.......      .+......                     .   ......+.
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL------GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRIS   78 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS------EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCccccccc------CccccceeeccccccccceecccccccccccccccccceEE
Confidence            345789999999999999999999985432211      00000000                     0   11225788


Q ss_pred             EEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHH
Q 026548           81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVE  158 (237)
Q Consensus        81 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~  158 (237)
                      ||||||++.|...+...+..+|++|+|+|+++..+......|+..+....  ..|+++++||+|+.+....  ..++..+
T Consensus        79 iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~  156 (403)
T 3sjy_A           79 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQ  156 (403)
T ss_dssp             EEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999998766666677776665542  3589999999998753211  1122333


Q ss_pred             HHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          159 FAEDQ---GLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       159 ~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      +....   +++++++||++|.|++++|++|.+.+
T Consensus       157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            33222   56899999999999999999888765

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.85  E-value=7.9e-21  Score=157.07  Aligned_cols=127  Identities=15%  Similarity=0.183  Sum_probs=102.1

Q ss_pred             EEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcC-CCC
Q 026548           66 QTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT----------KRQSFDHVARWVEELRAHAD-SSI  134 (237)
Q Consensus        66 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~  134 (237)
                      ....+.+++  +.+.+||++|++.++..|..++++++++|+|||++          +..++.....|+..+..... .++
T Consensus       158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~  235 (327)
T 3ohm_A          158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS  235 (327)
T ss_dssp             EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred             EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence            344555565  78899999999999999999999999999999765          56667777777777665432 579


Q ss_pred             cEEEEEeCCCCCCCc----------------CCCHHHHHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          135 RIILIGNKSDLVDMR----------------AVSAEDAVEFAE----------DQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       135 p~vvv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      |++|++||+|+.+.+                ..+.+++.+++.          ..++.+++|||+++.+|+.+|..+.+.
T Consensus       236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~  315 (327)
T 3ohm_A          236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT  315 (327)
T ss_dssp             EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence            999999999986533                457788888743          356778999999999999999999999


Q ss_pred             HHHhhh
Q 026548          189 IYGAVS  194 (237)
Q Consensus       189 i~~~~~  194 (237)
                      |+++.-
T Consensus       316 Il~~~l  321 (327)
T 3ohm_A          316 ILQLNL  321 (327)
T ss_dssp             HHHTTC
T ss_pred             HHHHhH
Confidence            987643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.85  E-value=1.7e-20  Score=158.04  Aligned_cols=159  Identities=18%  Similarity=0.139  Sum_probs=110.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc---------hhchhhHhhhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE---------RYRAVTSAYYRG  100 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~~~~  100 (237)
                      .|+|+|++|+|||||+|+|.+..+.....+..+.+.....+.+++.  .+.+|||+|..         .+...+ ..+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence            4999999999999999999998764444455555666777888884  57899999962         233332 34789


Q ss_pred             CcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC-CHHHHHHHHHHc---CCeEEEEcCCC
Q 026548          101 ALGAVVVYDITKRQ--SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV-SAEDAVEFAEDQ---GLFFSEASALN  174 (237)
Q Consensus       101 ~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~  174 (237)
                      +|++++|+|++++.  ....+..|...+......+.|+++|+||+|+.+.... ..+.+..++..+   +.+++++||++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~  337 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK  337 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999999998876  5566666666666554457899999999998653210 011233334554   23689999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 026548          175 GDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       175 ~~gi~~~~~~l~~~i~~  191 (237)
                      +.|+++++++|.+.+..
T Consensus       338 g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          338 RTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhcc
Confidence            99999999998886654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.85  E-value=8.9e-21  Score=165.37  Aligned_cols=155  Identities=16%  Similarity=0.116  Sum_probs=111.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCC-------CcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNE-------FFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR   99 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   99 (237)
                      ..++|+++|++++|||||+++|.+..       ......+.++.+.....+.+++  ..+.||||||++.|...+...+.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence            47899999999999999999999876       2223333444444444455566  56889999999999988889999


Q ss_pred             CCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--CCCHHHHHHHHHHc----CCeEEEE
Q 026548          100 GALGAVVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR--AVSAEDAVEFAEDQ----GLFFSEA  170 (237)
Q Consensus       100 ~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~--~~~~~~~~~~~~~~----~~~~~~~  170 (237)
                      .+|++|+|+|+++   +++.+.+    ..+..   .++|++|++||+|+....  +...++..+++...    +++++++
T Consensus        96 ~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v  168 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI  168 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred             hCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence            9999999999988   4444333    22222   368889999999987521  11233455556555    5789999


Q ss_pred             cCCCCCCHHHHHHHHHHHHH
Q 026548          171 SALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       171 Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      ||++|.|+++++++|.+.+.
T Consensus       169 SA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          169 SAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999988775

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=2.6e-20  Score=159.58  Aligned_cols=159  Identities=19%  Similarity=0.195  Sum_probs=104.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCC---CcCCCCC--CcceeEEEEEEEE-------------C--C----EEEEEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNE---FFFDSKS--TIGVEFQTRTVTI-------------N--G----KIIKAQI   81 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l   81 (237)
                      ...++|+++|+.++|||||+++|.+..   +.....+  |....+....+..             +  +    ....+.|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            356899999999999999999998543   2233334  3333333333221             1  1    1367899


Q ss_pred             EeCCCcchhchhhHhhhcCCcEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--CCHHH
Q 026548           82 WDTAGQERYRAVTSAYYRGALGAVVVYDITK----RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA--VSAED  155 (237)
Q Consensus        82 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--~~~~~  155 (237)
                      |||||++.|.......+..+|++|+|+|+++    +++.+.+..    +...  ...|++|++||+|+.....  ...++
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence            9999999998877778889999999999985    444444432    2222  2357999999999976432  23456


Q ss_pred             HHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          156 AVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       156 ~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      +.+++..   .+++++++||++|.|+++++++|.+.+.
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            6666665   3578999999999999999988887543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.85  E-value=9.3e-21  Score=152.82  Aligned_cols=164  Identities=13%  Similarity=0.109  Sum_probs=108.3

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCC-cceeEEEEEEEECCEEEEEEEEeCCCcchhchh---------
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKST-IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV---------   93 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------   93 (237)
                      ....++|+|+|.+|+|||||+++|++..... ...++ ++.......+..++  ..+.||||||...+...         
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            3457899999999999999999999887433 33333 44555555666677  46789999997655322         


Q ss_pred             --hHhhhcCCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEe-CCCCCCCcCCCH-------HHHHHHHHH
Q 026548           94 --TSAYYRGALGAVVVYDITKRQSF-DHVARWVEELRAHADSSIRIILIGN-KSDLVDMRAVSA-------EDAVEFAED  162 (237)
Q Consensus        94 --~~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~vvv~n-K~D~~~~~~~~~-------~~~~~~~~~  162 (237)
                        ...+++.+|++|+|||+++.... ..+..|+..+.... ...|+++++| |+|+... ....       +...+++..
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence              22367899999999999862221 22223333322111 1356666666 9998742 1111       224446666


Q ss_pred             cCCeE-----EEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548          163 QGLFF-----SEASALNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       163 ~~~~~-----~~~Sa~~~~gi~~~~~~l~~~i~~~  192 (237)
                      .+..+     +++||+++.|++++|.+|.+.+.+.
T Consensus       175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            65432     6899999999999999999887653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.85  E-value=9.3e-21  Score=168.39  Aligned_cols=158  Identities=19%  Similarity=0.229  Sum_probs=110.5

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCC--CcC-----CCC------CCcceeEEEEE--EEE---CCEEEEEEEEeCCCcc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNE--FFF-----DSK------STIGVEFQTRT--VTI---NGKIIKAQIWDTAGQE   88 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~--~~~-----~~~------~~~~~~~~~~~--~~~---~~~~~~~~l~Dt~G~~   88 (237)
                      +..+|+|+|+.++|||||+++|+...  +..     ...      ...+.+.....  +.+   ++..+.+.||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46799999999999999999998632  110     000      11122222222  222   4556889999999999


Q ss_pred             hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCe--
Q 026548           89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLF--  166 (237)
Q Consensus        89 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~--  166 (237)
                      .|...+...++.+|++|+|+|+++....+....|.....    .++|+++++||+|+....  ..+...++...+++.  
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            999999999999999999999998766666666766543    378999999999997532  233345566666764  


Q ss_pred             -EEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          167 -FSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       167 -~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                       ++++||++|.|++++|+++.+.+.
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCC
Confidence             899999999999999998887653

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.85  E-value=1.2e-20  Score=162.85  Aligned_cols=155  Identities=21%  Similarity=0.183  Sum_probs=106.9

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCC-------------------------------cCCCCCCcceeEEEEEEEE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEF-------------------------------FFDSKSTIGVEFQTRTVTI   72 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   72 (237)
                      +....++|+++|++++|||||+++|+...-                               .....+.++.+.....+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            345578999999999999999999954321                               1111234455555555555


Q ss_pred             CCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCC
Q 026548           73 NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS---FD---HVARWVEELRAHADSSIR-IILIGNKSDL  145 (237)
Q Consensus        73 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~vvv~nK~D~  145 (237)
                      ++  ..+.||||||++.|...+...+..+|++|+|+|+++...   ++   .....+..+..   .++| ++|++||+|+
T Consensus        93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD  167 (439)
T ss_pred             CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence            55  478899999999999999999999999999999988532   11   11122222222   3677 9999999998


Q ss_pred             CCCc------CCCHHHHHHHHHHcC------CeEEEEcCCCCCCHHHHHH
Q 026548          146 VDMR------AVSAEDAVEFAEDQG------LFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       146 ~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~  183 (237)
                      ....      +...++..+++..++      ++++++||++|.|+.++++
T Consensus       168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            5311      111233444555544      4699999999999998665

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.85  E-value=1.9e-20  Score=166.17  Aligned_cols=159  Identities=21%  Similarity=0.227  Sum_probs=113.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCC--CcC-----CC--------CCCcceeEEEEEEEE---CCEEEEEEEEeCCCc
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNE--FFF-----DS--------KSTIGVEFQTRTVTI---NGKIIKAQIWDTAGQ   87 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~--~~~-----~~--------~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~   87 (237)
                      .+..+|+++|+.++|||||+++|+...  +..     ..        ....+.......+.+   ++..+.+.||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            457899999999999999999997532  110     00        011111111111222   455678999999999


Q ss_pred             chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC--
Q 026548           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL--  165 (237)
Q Consensus        88 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--  165 (237)
                      ..|...+...++.+|++|+|+|+++....+....|.....    .++|+++++||+|+....  ..+...++...+++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9999999999999999999999999877777777766543    479999999999997532  22334556666676  


Q ss_pred             -eEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          166 -FFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       166 -~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                       .++++||++|.|++++|+++.+.+.
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhcc
Confidence             3899999999999999998887654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.84  E-value=1.6e-21  Score=168.85  Aligned_cols=153  Identities=18%  Similarity=0.198  Sum_probs=104.7

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhH--------hh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTS--------AY   97 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------~~   97 (237)
                      ..++|+++|++|+|||||+|+|.+..+.. ...++++.++....+.+++.  .+.||||||...+...+.        .+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence            35789999999999999999999876543 33355556665566777884  568999999766544333        35


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 026548           98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN  177 (237)
Q Consensus        98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  177 (237)
                      +..+|++|+|||++++.+... ..|+..+.     ..|+++|+||+|+.......  ...++.  .+.+++++||++|.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            789999999999998766544 34444442     37999999999997644332  111111  346799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 026548          178 VDTAFFRLLQEIYG  191 (237)
Q Consensus       178 i~~~~~~l~~~i~~  191 (237)
                      ++++|++|.+.+..
T Consensus       371 i~eL~~~i~~~~~~  384 (462)
T 3geh_A          371 IDSLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.84  E-value=1.6e-20  Score=154.65  Aligned_cols=155  Identities=21%  Similarity=0.129  Sum_probs=106.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcc-h--------hchhhHhh
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQE-R--------YRAVTSAY   97 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~--------~~~~~~~~   97 (237)
                      ..+|+|+|++|+|||||+|+|++..+.... .+..+.......+..++  .++.+|||||.. .        +.......
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            457999999999999999999998865432 23233333333344455  568899999987 2        23334566


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 026548           98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGD  176 (237)
Q Consensus        98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  176 (237)
                      ++.+|++++|+|+++ -  .....|+.....  ..+.|+++++||+|+........+...++...++. .++++||+++.
T Consensus        86 l~~~D~vl~Vvd~~~-~--~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~  160 (301)
T 1ega_A           86 IGDVELVIFVVEGTR-W--TPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL  160 (301)
T ss_dssp             CCCEEEEEEEEETTC-C--CHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             HhcCCEEEEEEeCCC-C--CHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence            789999999999977 2  222233332222  24799999999999865222223344455555665 69999999999


Q ss_pred             CHHHHHHHHHHHH
Q 026548          177 NVDTAFFRLLQEI  189 (237)
Q Consensus       177 gi~~~~~~l~~~i  189 (237)
                      |++++++.+.+.+
T Consensus       161 ~v~~l~~~i~~~l  173 (301)
T 1ega_A          161 NVDTIAAIVRKHL  173 (301)
T ss_dssp             THHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhC
Confidence            9998888776543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.84  E-value=3.4e-20  Score=155.84  Aligned_cols=125  Identities=18%  Similarity=0.237  Sum_probs=95.5

Q ss_pred             EEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCCcE
Q 026548           68 RTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARWVEELRAHA-DSSIRI  136 (237)
Q Consensus        68 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~  136 (237)
                      ..+.+++  +.+.+|||+|++.++..|..++++++++|+|||+++          ..++.....|+..+.... ..++|+
T Consensus       194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi  271 (362)
T 1zcb_A          194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI  271 (362)
T ss_dssp             EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence            4455565  678999999999999999999999999999999999          678888888888877643 257999


Q ss_pred             EEEEeCCCCCCCc----------------CCCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          137 ILIGNKSDLVDMR----------------AVSAEDAVEFAE-----------DQGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       137 vvv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      +|++||+|+...+                ....+++.+++.           ..++.+++|||+++.||+++|.++.+.+
T Consensus       272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i  351 (362)
T 1zcb_A          272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  351 (362)
T ss_dssp             EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence            9999999985322                256777877762           3457799999999999999999999988


Q ss_pred             HHhhh
Q 026548          190 YGAVS  194 (237)
Q Consensus       190 ~~~~~  194 (237)
                      ++..-
T Consensus       352 ~~~~l  356 (362)
T 1zcb_A          352 LHDNL  356 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.84  E-value=8.7e-20  Score=157.72  Aligned_cols=160  Identities=23%  Similarity=0.186  Sum_probs=109.1

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh-----------
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV-----------   93 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   93 (237)
                      +..++|+|+|++|+|||||+|+|.+.... ....++++.+.....+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            35689999999999999999999988753 233355555555667778885  4679999997433221           


Q ss_pred             -hHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH-HHHH----cCCeE
Q 026548           94 -TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE-FAED----QGLFF  167 (237)
Q Consensus        94 -~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~  167 (237)
                       ....++.+|++++++|+++..+..+. .+...+..   .++|+++++||+|+...+....++..+ +...    .++++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence             12457789999999999886555442 23333332   479999999999987654444444332 2232    35789


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHH
Q 026548          168 SEASALNGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       168 ~~~Sa~~~~gi~~~~~~l~~~i~~  191 (237)
                      +++||++|.|++++|+.+.+.+..
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999876644

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.83  E-value=3.8e-21  Score=156.40  Aligned_cols=160  Identities=15%  Similarity=0.238  Sum_probs=92.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC--------CCCcceeEEEEEEEECCEEEEEEEEeCCCcc-------hh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS--------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQE-------RY   90 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~   90 (237)
                      ...++|+|+|.+|+|||||+|+|++.......        .++++.+.....+..++..+.+.||||||..       .+
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            45789999999999999999998877654432        3555555555555445555689999999963       22


Q ss_pred             chhh-------Hhhhc-------------CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           91 RAVT-------SAYYR-------------GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        91 ~~~~-------~~~~~-------------~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      ..+.       ..++.             ++|+++++++.+.......-..++..+..    ++|+++|+||+|+....+
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e  161 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE  161 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence            2222       22332             37889999976652211222233444332    799999999999864322


Q ss_pred             C--CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          151 V--SAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       151 ~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      .  ..+.+.+.....+++++.+|+.++.|+++++.+|.+.+
T Consensus       162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            1  12334555667789999999999999998887776543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.83  E-value=5.2e-20  Score=157.83  Aligned_cols=159  Identities=22%  Similarity=0.229  Sum_probs=110.0

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCC---cCCCCC--CcceeEEEEEEEE-------------C--C----EEEEEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEF---FFDSKS--TIGVEFQTRTVTI-------------N--G----KIIKAQI   81 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l   81 (237)
                      ...++|+++|++++|||||+++|.+...   .....+  |....+....+..             +  +    ....+.|
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            4578999999999999999999985432   222223  3333333333221             1  1    1267899


Q ss_pred             EeCCCcchhchhhHhhhcCCcEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--CCHHH
Q 026548           82 WDTAGQERYRAVTSAYYRGALGAVVVYDITK----RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA--VSAED  155 (237)
Q Consensus        82 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--~~~~~  155 (237)
                      |||||++.|.......+..+|++|+|+|+++    +++.+.+..    +...  ...|++|++||+|+.....  ...++
T Consensus        88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~  161 (410)
T 1kk1_A           88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALENYRQ  161 (410)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHHHHH
Confidence            9999999998877778889999999999985    344444432    2222  2357999999999875321  12334


Q ss_pred             HHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          156 AVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       156 ~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      +.+++..   .+++++++||++|.|+++++++|.+.+.
T Consensus       162 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          162 IKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            4555543   3578999999999999999988876543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.83  E-value=2.4e-21  Score=167.38  Aligned_cols=151  Identities=17%  Similarity=0.155  Sum_probs=98.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcc--------hhchhhHhhhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQE--------RYRAVTSAYYR   99 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~   99 (237)
                      ++|+++|.+|+|||||+|+|++..+.... .+.++.+.....+.+.+  ..+.+|||||.+        .+...+..+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999988764322 23333343333333344  468899999975        56666778889


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCCH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDNV  178 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi  178 (237)
                      .+|++|+|+|+.++.+..+  .|+..+..  ..++|+++|+||+|+.....    ...++. .+++ .++++||++|.|+
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTH
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCCh
Confidence            9999999999988655443  23333222  25789999999999864321    111222 3454 6899999999999


Q ss_pred             HHHHHHHHHHHH
Q 026548          179 DTAFFRLLQEIY  190 (237)
Q Consensus       179 ~~~~~~l~~~i~  190 (237)
                      .++++++.+.+.
T Consensus       153 ~~L~~~i~~~l~  164 (436)
T 2hjg_A          153 GDLLDAVAEHFK  164 (436)
T ss_dssp             HHHHHHHHHTGG
T ss_pred             HHHHHHHHHhcC
Confidence            999999887764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.83  E-value=3e-21  Score=162.65  Aligned_cols=164  Identities=14%  Similarity=0.298  Sum_probs=92.7

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCC--------CCcceeEEEEEEEECCEEEEEEEEeCCCc-------ch
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSK--------STIGVEFQTRTVTINGKIIKAQIWDTAGQ-------ER   89 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~   89 (237)
                      ...++|+|+|++|+|||||+++|++..... .+.        ++.+.......+..++..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            346899999999999999999987654332 221        33333333333444566678999999998       66


Q ss_pred             hchhhH-------hhhcCC-------------cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548           90 YRAVTS-------AYYRGA-------------LGAVVVYDITKRQSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM  148 (237)
Q Consensus        90 ~~~~~~-------~~~~~~-------------d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~  148 (237)
                      +..++.       .+++.+             |+++|+++.. ..++..+. .|+..+    ..++|+|+|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence            666665       555433             3445544431 33343333 333332    257999999999998764


Q ss_pred             cCCCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhc
Q 026548          149 RAVSA--EDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       149 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~  195 (237)
                      +++..  +.+.+++..++++++++||+++.+ ++.|..+.+.+.+..+.
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~  237 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF  237 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence            44332  456667777889999999999999 89999999999887764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.83  E-value=1.7e-20  Score=163.95  Aligned_cols=151  Identities=17%  Similarity=0.161  Sum_probs=98.8

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCc-------------------------------CCCCCCcceeEEEEEEEECC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFF-------------------------------FDSKSTIGVEFQTRTVTING   74 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   74 (237)
                      ...+||+++|++++|||||+++|++....                               ......++.+.....+...+
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            34799999999999999999999755110                               11112333333333333343


Q ss_pred             EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHH------HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH------VARWVEELRAHADSSIRIILIGNKSDLVDM  148 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~  148 (237)
                        ..+.||||||++.|...+..++..+|++|+|||+++..+...      ....+......  ...|++||+||+|+.+.
T Consensus       111 --~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          111 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             --CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTT
T ss_pred             --ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccc
Confidence              578899999999999999999999999999999998643321      12222222221  22469999999998763


Q ss_pred             cCCCHHHH----HHHHHHc-----CCeEEEEcCCCCCCHHH
Q 026548          149 RAVSAEDA----VEFAEDQ-----GLFFSEASALNGDNVDT  180 (237)
Q Consensus       149 ~~~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~gi~~  180 (237)
                      .+...+++    .++....     +++++++||++|.|+++
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            33323333    3333333     35799999999999985

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.82  E-value=8.2e-20  Score=152.95  Aligned_cols=120  Identities=16%  Similarity=0.187  Sum_probs=95.2

Q ss_pred             EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCC
Q 026548           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT----------KRQSFDHVARWVEELRAHAD-SSIRIILIGNKS  143 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~  143 (237)
                      ..+.+.+|||+|++.++.+|..++++++++|+|||++          +..+++....|+..+..... .++|++||+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5688999999999999999999999999999999998          67888888889888776432 679999999999


Q ss_pred             CCCCCcC--C-------------------CHHHHHHHHHH----------------cCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          144 DLVDMRA--V-------------------SAEDAVEFAED----------------QGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       144 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |+...+.  +                   ..+++.+++..                ..+.+++|||+++.||+++|.++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9854221  1                   14566666443                123468999999999999999999


Q ss_pred             HHHHHhhh
Q 026548          187 QEIYGAVS  194 (237)
Q Consensus       187 ~~i~~~~~  194 (237)
                      +.+.+..-
T Consensus       341 ~~I~~~~l  348 (354)
T 2xtz_A          341 ETLRRRNL  348 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.82  E-value=3.3e-20  Score=142.56  Aligned_cols=116  Identities=19%  Similarity=0.321  Sum_probs=88.2

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC---CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcC-
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD---SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG-  100 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-  100 (237)
                      ....++|+|+|++|+|||||+++|.+..+...   ..++.+.++         ..+.+.+|||||++.+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            35678999999999999999999998876441   122222111         23568899999999988878777765 


Q ss_pred             ---CcEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCc
Q 026548          101 ---ALGAVVVYDIT-KRQSFDHVARWVEELRAH----ADSSIRIILIGNKSDLVDMR  149 (237)
Q Consensus       101 ---~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~vvv~nK~D~~~~~  149 (237)
                         +|++|+|||++ +..++..+..|+..+...    ...++|++||+||+|+....
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence               89999999999 899999988888776554    22579999999999997643

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.82  E-value=3.6e-22  Score=175.08  Aligned_cols=158  Identities=18%  Similarity=0.189  Sum_probs=114.1

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +.++|+++|++++|||||+++|.+..+.....++++.++....+..++. ..+.||||||++.|..++..++..+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            4578999999999999999999988776666566655554444444221 357899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC-CCHHHHHHH---HHHc--CCeEEEEcCCCCCCHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA-VSAEDAVEF---AEDQ--GLFFSEASALNGDNVDT  180 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~-~~~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~  180 (237)
                      |||+++....+....| ..+.   ..++|++|++||+|+.+... ...+...++   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            9999985544443322 2222   24789999999999864321 111122211   1112  24799999999999999


Q ss_pred             HHHHHHHHH
Q 026548          181 AFFRLLQEI  189 (237)
Q Consensus       181 ~~~~l~~~i  189 (237)
                      +|++|...+
T Consensus       158 Lle~I~~l~  166 (537)
T 3izy_P          158 LAEATIALA  166 (537)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999888765

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.82  E-value=8.6e-20  Score=151.43  Aligned_cols=121  Identities=14%  Similarity=0.239  Sum_probs=97.6

Q ss_pred             EEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcC-CCCcEE
Q 026548           69 TVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT----------KRQSFDHVARWVEELRAHAD-SSIRII  137 (237)
Q Consensus        69 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~v  137 (237)
                      .+.+++  +.+.+||++|++.++..|..++++++++|+|||++          +..++.....|+..+..... .++|++
T Consensus       155 ~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~pii  232 (340)
T 4fid_A          155 DFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKL  232 (340)
T ss_dssp             EEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEE
T ss_pred             EEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEE
Confidence            344444  78899999999999999999999999999999998          67778888888888766433 679999


Q ss_pred             EEEeCCCCCCCc---------------CCCHHHHHHHHHH-c--------------------------CCeEEEEcCCCC
Q 026548          138 LIGNKSDLVDMR---------------AVSAEDAVEFAED-Q--------------------------GLFFSEASALNG  175 (237)
Q Consensus       138 vv~nK~D~~~~~---------------~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~  175 (237)
                      |++||+|+...+               ..+.+++.+++.. .                          .+.+++|||+++
T Consensus       233 Lv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt  312 (340)
T 4fid_A          233 IFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDG  312 (340)
T ss_dssp             EEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCH
T ss_pred             EEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCc
Confidence            999999985411               1246666555433 2                          367899999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQEIYG  191 (237)
Q Consensus       176 ~gi~~~~~~l~~~i~~  191 (237)
                      .+|+.+|..+.+.|++
T Consensus       313 ~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          313 SNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999988

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.82  E-value=5.3e-20  Score=161.75  Aligned_cols=115  Identities=16%  Similarity=0.102  Sum_probs=83.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCC------------------CcC----CCCCCcceeEEEEEEEECCEEEEEEEEeC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNE------------------FFF----DSKSTIGVEFQTRTVTINGKIIKAQIWDT   84 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   84 (237)
                      ...+|+|+|++|+|||||+++|+...                  ...    ......+.......+...+  +.+.||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence            36799999999999999999996211                  000    0001122222334445555  57889999


Q ss_pred             CCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        85 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      ||+..|...+..+++.+|++|+|+|+++.........|. .+..   .++|+++|+||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence            999999999999999999999999999876665554443 3333   4799999999999864

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.81  E-value=1.2e-19  Score=156.54  Aligned_cols=153  Identities=24%  Similarity=0.250  Sum_probs=104.9

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcC--C----------CCC---------------------CcceeEEEEEEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFF--D----------SKS---------------------TIGVEFQTRTVT   71 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~--~----------~~~---------------------~~~~~~~~~~~~   71 (237)
                      ....++|+++|++++|||||+++|++.....  .          ...                     .++.+.....+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            3457999999999999999999998654110  0          001                     112222222333


Q ss_pred             ECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCcC
Q 026548           72 INGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSI-RIILIGNKSDLVDMRA  150 (237)
Q Consensus        72 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~vvv~nK~D~~~~~~  150 (237)
                      .++  ..+.||||||++.|...+..++..+|++|+|+|+++.... ....|+..+...   ++ |++|++||+|+.+...
T Consensus       101 ~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~  174 (434)
T 1zun_B          101 TAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDE  174 (434)
T ss_dssp             CSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCH
T ss_pred             cCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccH
Confidence            344  5688999999999998888899999999999999985432 223344433332   44 6999999999975211


Q ss_pred             ----CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 026548          151 ----VSAEDAVEFAEDQG-----LFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       151 ----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~  183 (237)
                          ...++..+++..++     ++++++||++|.|++++|.
T Consensus       175 ~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          175 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence                12344556667777     6799999999999998543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.81  E-value=7.4e-19  Score=148.92  Aligned_cols=126  Identities=14%  Similarity=0.178  Sum_probs=101.3

Q ss_pred             EEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCCcE
Q 026548           68 RTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARWVEELRAHA-DSSIRI  136 (237)
Q Consensus        68 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~  136 (237)
                      ..+.+++  +.+.+|||+|++.++..|..++++++++|+|||+++          ..++.....|+..+.... ..++|+
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence            3455565  788999999999999999999999999999999999          889999999999987653 367999


Q ss_pred             EEEEeCCCCCCCcC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEEcCC
Q 026548          137 ILIGNKSDLVDMRA---V---------------------------SAEDAVEFA-----ED--------QGLFFSEASAL  173 (237)
Q Consensus       137 vvv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~  173 (237)
                      +||+||+|+...+.   +                           ..+++.+++     ..        .++.+++|||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999854221   1                           135566653     22        24668899999


Q ss_pred             CCCCHHHHHHHHHHHHHHhhhc
Q 026548          174 NGDNVDTAFFRLLQEIYGAVSK  195 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i~~~~~~  195 (237)
                      ++.||+++|.++.+.+....-+
T Consensus       368 d~~nV~~vF~~v~~~I~~~~l~  389 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQRMHLR  389 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888766543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.81  E-value=1.6e-19  Score=160.50  Aligned_cols=157  Identities=19%  Similarity=0.197  Sum_probs=106.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC----CCcceeEEEEEEE------E-CC-----EEEEEEEEeCCCcchhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSK----STIGVEFQTRTVT------I-NG-----KIIKAQIWDTAGQERYR   91 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~------~-~~-----~~~~~~l~Dt~G~~~~~   91 (237)
                      .++|+|+|++++|||||+++|.+..+.....    ++.+..+......      . .+     ....+.||||||++.|.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~   84 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT   84 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence            5689999999999999999998765533221    2222222111000      0 00     01248899999999999


Q ss_pred             hhhHhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC-------------H--
Q 026548           92 AVTSAYYRGALGAVVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS-------------A--  153 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~-------------~--  153 (237)
                      .++...++.+|++|+|||+++   +++++.+..    +..   .++|+++++||+|+...+...             .  
T Consensus        85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v  157 (594)
T 1g7s_A           85 TLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV  157 (594)
T ss_dssp             TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred             HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence            999989999999999999998   666554432    222   479999999999986532210             0  


Q ss_pred             -H-------HHHHHHHHcC---------------CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548          154 -E-------DAVEFAEDQG---------------LFFSEASALNGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       154 -~-------~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~~~~~l~~~i~~  191 (237)
                       +       +..+.....+               ++++++||++|.|+++++++|...+..
T Consensus       158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence             0       1111112222               379999999999999999999887654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.80  E-value=1.7e-20  Score=161.93  Aligned_cols=154  Identities=18%  Similarity=0.211  Sum_probs=103.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC--CCcCC-----------------------------CCCCcceeEEEEEEEECCE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN--EFFFD-----------------------------SKSTIGVEFQTRTVTINGK   75 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   75 (237)
                      ..++|+++|++++|||||+++|+..  .+...                             .....+.+.....+...+ 
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~-   83 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-   83 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence            4689999999999999999999864  22110                             012233333333333333 


Q ss_pred             EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhc----CCCC-cEEEEEeCCCCCCCc-
Q 026548           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA----DSSI-RIILIGNKSDLVDMR-  149 (237)
Q Consensus        76 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~----~~~~-p~vvv~nK~D~~~~~-  149 (237)
                       ..+.||||||++.|...+..++..+|++|+|||+++ .+++....|..+...+.    ..++ |++|++||+|+.+.. 
T Consensus        84 -~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           84 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             -eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence             568899999999999989999999999999999998 56664433322222211    1244 689999999987521 


Q ss_pred             -----CCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 026548          150 -----AVSAEDAVEFAEDQG-----LFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       150 -----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~  183 (237)
                           ....+++.+++...+     ++++++||++|.|+.+++.
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                 112345666777666     6799999999999986653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.80  E-value=4.5e-20  Score=160.21  Aligned_cols=154  Identities=18%  Similarity=0.138  Sum_probs=99.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCC--------cchhchhhHhhh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG--------QERYRAVTSAYY   98 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~~~   98 (237)
                      ...+|+|+|.+|+|||||+|+|.+..+.... .+.+.+.......+......+.+|||||        ++.+...+..++
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            3679999999999999999999998765322 2333333333444433335788999999        667777788889


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCC-eEEEEcCCCCCC
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL-FFSEASALNGDN  177 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  177 (237)
                      +.+|++|+|+|..+..+...  .|+..+...  .++|+++|+||+|+....    +...++. ..+. .++++||++|.|
T Consensus       101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~g  171 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLG  171 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred             hhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccc
Confidence            99999999999877433222  233332222  579999999999986421    1111221 2332 467999999999


Q ss_pred             HHHHHHHHHHHHH
Q 026548          178 VDTAFFRLLQEIY  190 (237)
Q Consensus       178 i~~~~~~l~~~i~  190 (237)
                      +.++++.+.+.+.
T Consensus       172 v~~L~~~i~~~l~  184 (456)
T 4dcu_A          172 LGDLLDAVAEHFK  184 (456)
T ss_dssp             HHHHHHHHHTTGG
T ss_pred             hHHHHHHHHhhcc
Confidence            9999988877553

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.80  E-value=1.4e-19  Score=154.52  Aligned_cols=156  Identities=17%  Similarity=0.087  Sum_probs=105.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCC-------CcCC---------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNE-------FFFD---------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      .++|+++|++++|||||+++|.+..       +...         .....+.+.  ....+......+.||||||++.|.
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f~   80 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADYV   80 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHHH
Confidence            5899999999999999999998641       1000         012222222  223333223568899999999998


Q ss_pred             hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcC---CCHHHHHHHHHHcC---
Q 026548           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRA---VSAEDAVEFAEDQG---  164 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~---~~~~~~~~~~~~~~---  164 (237)
                      ......+..+|++|+|+|+++....+....| ..+..   .++| ++|++||+|+.....   ...+++.+++..++   
T Consensus        81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           81 KNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            8888889999999999999985433333333 33333   3688 689999999874211   11235666777665   


Q ss_pred             --CeEEEEcCCCCCC----------HHHHHHHHHHHH
Q 026548          165 --LFFSEASALNGDN----------VDTAFFRLLQEI  189 (237)
Q Consensus       165 --~~~~~~Sa~~~~g----------i~~~~~~l~~~i  189 (237)
                        ++++++||++|.+          +.++++.|.+.+
T Consensus       157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence              5899999998764          677776665543

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.80  E-value=6.7e-20  Score=163.77  Aligned_cols=154  Identities=19%  Similarity=0.220  Sum_probs=102.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-------------------------------CCCcceeEEEEEEEECC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-------------------------------KSTIGVEFQTRTVTING   74 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   74 (237)
                      ...++|+++|++|+|||||+++|++.......                               .+.++.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            44789999999999999999999876432211                               12333333333344444


Q ss_pred             EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCcC
Q 026548           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS---FDHVARWVEELRAHADSSI-RIILIGNKSDLVDMRA  150 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~~~~~~~~~~~~~~~~~~-p~vvv~nK~D~~~~~~  150 (237)
                        ..+.||||||++.|...+...++.+|++|+|||+++...   +.....+...+......++ |++||+||+|+....+
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence              578899999999999989899999999999999987421   1001111122111112344 5999999999875322


Q ss_pred             CCH----HHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 026548          151 VSA----EDAVEFAEDQG-----LFFSEASALNGDNVDTA  181 (237)
Q Consensus       151 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~  181 (237)
                      ...    ++...++...+     ++++++||++|.|+.++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            222    23334444443     57999999999999876

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.79  E-value=1.3e-19  Score=153.00  Aligned_cols=147  Identities=12%  Similarity=0.050  Sum_probs=105.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      +|+++|++++|||||+++|+.        ...+.+.....+..++  ..+.||||||+++|.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            999999999999999999981        1222222223333333  468899999999998888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCcCCC--HHHHHHHHHHcC---CeEEE--EcCCC---CCC
Q 026548          110 ITKRQSFDHVARWVEELRAHADSSIRI-ILIGN-KSDLVDMRAVS--AEDAVEFAEDQG---LFFSE--ASALN---GDN  177 (237)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-vvv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~Sa~~---~~g  177 (237)
                       +. ........|+..+..   .++|. ++++| |+|+ ......  .+++.+++...+   +++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             54 233444555555444   35777 89999 9998 422111  134455554443   68999  99999   999


Q ss_pred             HHHHHHHHHHHHHHh
Q 026548          178 VDTAFFRLLQEIYGA  192 (237)
Q Consensus       178 i~~~~~~l~~~i~~~  192 (237)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999998876543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.79  E-value=2e-20  Score=162.68  Aligned_cols=155  Identities=17%  Similarity=0.149  Sum_probs=91.5

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC--CCcC-----------------------------CCCCCcceeEEEEEEEECC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFFF-----------------------------DSKSTIGVEFQTRTVTING   74 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   74 (237)
                      ...++|+++|++++|||||+++|+..  .+..                             ......+.+.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            45789999999999999999999742  1110                             0011222222223344454


Q ss_pred             EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCc-
Q 026548           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMR-  149 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~-  149 (237)
                        ..+.||||||++.|...+...+..+|++|+|||+++..   +|+....|...+......++| ++|++||+|+.... 
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              56889999999999998888899999999999999852   222212222222222224677 99999999985311 


Q ss_pred             -----CCCHHHHHHHHHHc-------CCeEEEEcCCCCCCHHHHH
Q 026548          150 -----AVSAEDAVEFAEDQ-------GLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       150 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~  182 (237)
                           ....+++.+++...       +++++++||++|.|+.++|
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 11123456666665       3569999999999998766

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.79  E-value=1.7e-19  Score=154.40  Aligned_cols=145  Identities=17%  Similarity=0.092  Sum_probs=100.8

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC--------CCcCC---------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN--------EFFFD---------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER   89 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   89 (237)
                      ..++|+++|++++|||||+++|.+.        .+...         .....+.+.....+...+  ..+.||||||++.
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~~~iiDtpG~~~   87 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   87 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC--eEEEEEECCChHH
Confidence            4689999999999999999999873        11100         011222222222233233  5688999999999


Q ss_pred             hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC---CHHHHHHHHHHcC-
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV---SAEDAVEFAEDQG-  164 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~-  164 (237)
                      |.......+..+|++|+|+|+++.... ....|+..+..   .++| +++++||+|+......   ..++..+++..++ 
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~  163 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  163 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence            998888899999999999999886433 33455555444   3688 8899999998742111   1234556666665 


Q ss_pred             ----CeEEEEcCCCCCC
Q 026548          165 ----LFFSEASALNGDN  177 (237)
Q Consensus       165 ----~~~~~~Sa~~~~g  177 (237)
                          ++++++||++|.|
T Consensus       164 ~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          164 PGDEVPVIRGSALLALE  180 (405)
T ss_dssp             CTTTSCEEECCHHHHHH
T ss_pred             cccCCCEEEccHHHhhh
Confidence                6799999999987

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.78  E-value=2.1e-19  Score=147.56  Aligned_cols=161  Identities=16%  Similarity=0.133  Sum_probs=103.1

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC------CC----------------------ccee-----------
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK------ST----------------------IGVE-----------   64 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~------~~----------------------~~~~-----------   64 (237)
                      .....++|+|+|.+|+|||||+|+|++..+.+...      ++                      .+.+           
T Consensus        22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~  101 (299)
T 2aka_B           22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD  101 (299)
T ss_dssp             TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence            34557899999999999999999999988743221      21                      0000           


Q ss_pred             ------------EEEEEEEECCEEEEEEEEeCCCcc-------------hhchhhHhhhcCCcEEE-EEEECCChhhHHH
Q 026548           65 ------------FQTRTVTINGKIIKAQIWDTAGQE-------------RYRAVTSAYYRGALGAV-VVYDITKRQSFDH  118 (237)
Q Consensus        65 ------------~~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~  118 (237)
                                  .....+.... ...+.||||||..             .+..++..+++.++.+| +|+|+++..+...
T Consensus       102 ~i~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~  180 (299)
T 2aka_B          102 RVTGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD  180 (299)
T ss_dssp             HHCSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH
T ss_pred             HhcccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH
Confidence                        0000001110 1468899999954             34556677888888766 7999987544433


Q ss_pred             HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH--cC-CeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          119 VARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED--QG-LFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       119 ~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      ...++..+.   ..+.|+++|+||+|+........+........  .+ .+++++||+++.|++++|+++.+.
T Consensus       181 ~~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          181 ALKIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            333444432   25789999999999876443223222210001  12 357889999999999999988873

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.78  E-value=4.2e-21  Score=167.02  Aligned_cols=152  Identities=18%  Similarity=0.212  Sum_probs=106.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +.++|+++|++++|||||+++|.+..+.....++++.+.....+..++  ..+.||||||++.|..++...+..+|++|+
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            457899999999999999999987665544333333333222233344  357899999999999999999999999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--CCCHH--HHHHHHHHcC--CeEEEEcCCCCCC
Q 026548          107 VYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR--AVSAE--DAVEFAEDQG--LFFSEASALNGDN  177 (237)
Q Consensus       107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~g  177 (237)
                      |||+++   +++.+.+    ..+..   .++|+++++||+|+.+..  .+..+  +...++..++  ++++++||++|.|
T Consensus        81 VVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g  153 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG  153 (501)
T ss_dssp             EEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred             EeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence            999988   4444332    22222   478999999999986421  11000  0000112233  6899999999999


Q ss_pred             HHHHHHHHHH
Q 026548          178 VDTAFFRLLQ  187 (237)
Q Consensus       178 i~~~~~~l~~  187 (237)
                      ++++|++|..
T Consensus       154 I~eLle~I~~  163 (501)
T 1zo1_I          154 IDELLDAILL  163 (501)
T ss_dssp             CTTHHHHTTT
T ss_pred             cchhhhhhhh
Confidence            9999988764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.78  E-value=1.4e-18  Score=135.23  Aligned_cols=158  Identities=20%  Similarity=0.196  Sum_probs=100.4

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----------hch
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----------YRA   92 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~   92 (237)
                      -......+|+++|++|+|||||+++|.+..+.....++.+.......+.+++   .+.+|||||...          +..
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~   97 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR   97 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence            3445568999999999999999999998774333334444443333344433   367999999742          233


Q ss_pred             hhHhhh---cCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC--CCHHHHHHHHHHcC-
Q 026548           93 VTSAYY---RGALGAVVVYDITKRQSFD--HVARWVEELRAHADSSIRIILIGNKSDLVDMRA--VSAEDAVEFAEDQG-  164 (237)
Q Consensus        93 ~~~~~~---~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~--~~~~~~~~~~~~~~-  164 (237)
                      ....++   ..++++++++|+++..+..  .+..|+.   .   .++|+++++||+|+....+  ...+.+..++...+ 
T Consensus        98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~  171 (210)
T 1pui_A           98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG  171 (210)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence            333444   5789999999998864433  2333332   1   4689999999999864321  11344555555544 


Q ss_pred             -CeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          165 -LFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       165 -~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                       +.++++|++++.|++++++.|.+.+
T Consensus       172 ~~~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          172 DVQVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCceEEEeecCCCCHHHHHHHHHHHH
Confidence             4688999999999999998887764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.77  E-value=7.9e-18  Score=135.89  Aligned_cols=126  Identities=16%  Similarity=0.122  Sum_probs=88.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC-CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc------
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD-SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR------   99 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------   99 (237)
                      ..++|+|+|.+|+|||||+++|++..+... ..+..+.......+..++  ..+.||||||+..+......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            478999999999999999999999876332 223334445555566677  46889999998877655444443      


Q ss_pred             ---CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCCCcCCCHH
Q 026548          100 ---GALGAVVVYDITKRQSFDHVARWVEELRAHADSS--IRIILIGNKSDLVDMRAVSAE  154 (237)
Q Consensus       100 ---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~vvv~nK~D~~~~~~~~~~  154 (237)
                         .+|++|+|++++..........|+..+......+  .|+++|+||+|+........+
T Consensus       113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e  172 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE  172 (262)
T ss_dssp             TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred             hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence               7899999999876542223346666666654333  499999999998654444444

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.76  E-value=2.4e-19  Score=155.57  Aligned_cols=150  Identities=19%  Similarity=0.184  Sum_probs=101.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC--CCcCC-----------------------------CCCCcceeEEEEEEEECCE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN--EFFFD-----------------------------SKSTIGVEFQTRTVTINGK   75 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   75 (237)
                      ..++|+++|++++|||||+++|++.  .+...                             ....++.+.....+..++ 
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~-   84 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-   84 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC-
Confidence            4689999999999999999999864  11100                             002222222223333444 


Q ss_pred             EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCC
Q 026548           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SFD---HVARWVEELRAHADSSIR-IILIGNKSDLVDM  148 (237)
Q Consensus        76 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~  148 (237)
                       ..+.||||||++.|.......+..+|++|+|+|+++..   +|+   ....++..+..   .++| ++|++||+|+.+.
T Consensus        85 -~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~  160 (458)
T 1f60_A           85 -YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKW  160 (458)
T ss_dssp             -EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTT
T ss_pred             -ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccC
Confidence             56889999999999998889999999999999998753   221   22222222222   3565 8999999998732


Q ss_pred             cC----CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 026548          149 RA----VSAEDAVEFAEDQG-----LFFSEASALNGDNVDTA  181 (237)
Q Consensus       149 ~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~  181 (237)
                      ..    ...++..+++..++     ++++++||++|.|+.++
T Consensus       161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            11    12234555666665     67999999999999754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.76  E-value=8.1e-18  Score=143.56  Aligned_cols=161  Identities=16%  Similarity=0.111  Sum_probs=113.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----hchhhHh---hhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----YRAVTSA---YYRGA  101 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~~  101 (237)
                      -.|+|+|++|||||||+++|.+........+..+.......+.+++ ...+.+||+||...    +..+...   .+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            3589999999999999999998754322223333333444454543 23578999999643    2222222   24579


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      +.+++++|++ ...+..+..|..++..+..  ...|.+|++||+|+...  ...+...+.+...++.++.+||+++.|++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9999999998 5566777777777665432  35899999999998753  22344555555667889999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 026548          180 TAFFRLLQEIYGAV  193 (237)
Q Consensus       180 ~~~~~l~~~i~~~~  193 (237)
                      +++++|.+.+.+..
T Consensus       314 eL~~~i~~~l~~~~  327 (416)
T 1udx_A          314 ALKEALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887644

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.75  E-value=1.4e-18  Score=161.71  Aligned_cols=160  Identities=18%  Similarity=0.098  Sum_probs=105.1

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCC-------cC-------CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEF-------FF-------DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY   90 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   90 (237)
                      ....++|+++|++++|||||+++|++...       ..       ....+.+.++....+.++.....+.||||||++.|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            34579999999999999999999986410       00       00011222222122233333357889999999999


Q ss_pred             chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC---CHHHHHHHHHHcC--
Q 026548           91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV---SAEDAVEFAEDQG--  164 (237)
Q Consensus        91 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~--  164 (237)
                      .......+..+|++|+|||+++....+ ...|+..+..   .++| +||++||+|+....+.   ..+++.+++...+  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            988888999999999999998853322 2334444443   2688 7899999999752211   1245666777665  


Q ss_pred             ---CeEEEEcCCCC--------CCHHHHHHHHHHH
Q 026548          165 ---LFFSEASALNG--------DNVDTAFFRLLQE  188 (237)
Q Consensus       165 ---~~~~~~Sa~~~--------~gi~~~~~~l~~~  188 (237)
                         ++++++||++|        .|+.++++.|.+.
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~  483 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY  483 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence               57999999999        3566666655543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.75  E-value=5.8e-18  Score=152.88  Aligned_cols=116  Identities=12%  Similarity=0.098  Sum_probs=82.7

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC------------------CCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK------------------STIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      .....+|+|+|+.|+|||||+++|.+........                  ..++.......+....  +.++||||||
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG   83 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPG   83 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCC
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCC
Confidence            3456799999999999999999998433221100                  1222223333333344  6788999999


Q ss_pred             cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV  146 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~  146 (237)
                      +..|...+..+++.+|++++|+|+++...... ..++..+..   .++|+++++||+|+.
T Consensus        84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             ccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence            99999989999999999999999887544332 244444443   379999999999986

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.75  E-value=2.3e-19  Score=159.85  Aligned_cols=150  Identities=24%  Similarity=0.229  Sum_probs=82.2

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCc-------------------------------CCCCCCcceeEEEEEEEEC
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFF-------------------------------FDSKSTIGVEFQTRTVTIN   73 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   73 (237)
                      ....++|+++|++++|||||+++|+.....                               ....++++.+.....+..+
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            345789999999999999999999642110                               0112233333333333333


Q ss_pred             CEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 026548           74 GKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SF---DHVARWVEELRAHADSSIR-IILIGNKSDLV  146 (237)
Q Consensus        74 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~  146 (237)
                      +  ..+.||||||++.|...+...+..+|++|+|+|+++..   .+   ......+..+..   .++| +|||+||+|+.
T Consensus       254 ~--~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~  328 (592)
T 3mca_A          254 K--KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM  328 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG
T ss_pred             C--eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc
Confidence            3  57889999999999988888899999999999998532   11   111111222222   3566 89999999986


Q ss_pred             CCcCCC----HHHHHHHH-HHcCC-----eEEEEcCCCCCCHH
Q 026548          147 DMRAVS----AEDAVEFA-EDQGL-----FFSEASALNGDNVD  179 (237)
Q Consensus       147 ~~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~gi~  179 (237)
                      ......    .+++.++. ...++     +++++||++|.|+.
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            521111    22333444 33454     69999999999998

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.74  E-value=1.8e-18  Score=145.88  Aligned_cols=156  Identities=12%  Similarity=0.112  Sum_probs=104.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEE--------------------------------------
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTR--------------------------------------   68 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------   68 (237)
                      ....|+|+|++|||||||+|+|.+..+.+....+++......                                      
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            455999999999999999999999887544333222110000                                      


Q ss_pred             ----------------EEEECCEEEEEEEEeCCCcchh-------------chhhHhhhcCCcEEEEEEECCChhhHHHH
Q 026548           69 ----------------TVTINGKIIKAQIWDTAGQERY-------------RAVTSAYYRGALGAVVVYDITKRQSFDHV  119 (237)
Q Consensus        69 ----------------~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~  119 (237)
                                      .+.... ...+.||||||...+             ..+...+++.+|++|+++|..+.....  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--  189 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--  189 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETT-SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred             HhcCCCCCcccceEEEEEeCCC-CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence                            000010 124789999997765             556778899999999999875533221  


Q ss_pred             HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          120 ARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       120 ~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      ..|+..+......+.|+++|+||+|+........+....+...++.+|+.+++.++.++++.+..+
T Consensus       190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             HHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence            234444444444678999999999987655544444444444567789999999888777655443

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.74  E-value=1.9e-17  Score=150.08  Aligned_cols=165  Identities=15%  Similarity=0.170  Sum_probs=109.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcce------------eE---------------------------
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGV------------EF---------------------------   65 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~------------~~---------------------------   65 (237)
                      ...++|+|+|.+|+|||||+|+|++..+.+... +++..            ..                           
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            347899999999999999999999988655432 33210            00                           


Q ss_pred             --------------EEEEEEECCEE--EEEEEEeCCCcch---hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHH
Q 026548           66 --------------QTRTVTINGKI--IKAQIWDTAGQER---YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEEL  126 (237)
Q Consensus        66 --------------~~~~~~~~~~~--~~~~l~Dt~G~~~---~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~  126 (237)
                                    ....+..+...  ..+.||||||...   ....+..+++.+|++|+|+|++++.+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                          00001111000  2478999999655   3345567889999999999999887777766665444


Q ss_pred             HHhcCCCCcEEEEEeCCCCCCCcCCCHH----------HHHHH----H-HH--------cCCeEEEEcCC----------
Q 026548          127 RAHADSSIRIILIGNKSDLVDMRAVSAE----------DAVEF----A-ED--------QGLFFSEASAL----------  173 (237)
Q Consensus       127 ~~~~~~~~p~vvv~nK~D~~~~~~~~~~----------~~~~~----~-~~--------~~~~~~~~Sa~----------  173 (237)
                      ..   .+.|+++|+||+|+........+          ...+.    . ..        ...++++|||+          
T Consensus       227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~  303 (695)
T 2j69_A          227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP  303 (695)
T ss_dssp             TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred             Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence            32   36789999999998654311111          11111    1 11        12369999999          


Q ss_pred             ----CCCCHHHHHHHHHHHHHHhh
Q 026548          174 ----NGDNVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       174 ----~~~gi~~~~~~l~~~i~~~~  193 (237)
                          ++.|+++++..|.+.+....
T Consensus       304 ~~~~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          304 QADLDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             TCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred             hhhhhccCHHHHHHHHHHHHHHhH
Confidence                99999999999988775443

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.73  E-value=4.6e-17  Score=147.58  Aligned_cols=117  Identities=17%  Similarity=0.195  Sum_probs=83.7

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCC--C------cCC----------CCCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNE--F------FFD----------SKSTIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~--~------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      ..+..+|+|+|++|+|||||+++|+...  +      ...          .....+.......+...+  +.+.||||||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG   86 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPG   86 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcC
Confidence            3457899999999999999999998421  1      000          011122222233344454  6788999999


Q ss_pred             cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      +..|...+..+++.+|++|+|+|+++.........|.. +..   .++|+++++||+|+..
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            99999999999999999999999998777666655554 333   3799999999999864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.72  E-value=2.4e-18  Score=141.50  Aligned_cols=164  Identities=16%  Similarity=0.269  Sum_probs=88.5

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC-CCcCCCCC------CcceeEEEEEEEE--CCEEEEEEEEeCCCc-------ch
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN-EFFFDSKS------TIGVEFQTRTVTI--NGKIIKAQIWDTAGQ-------ER   89 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~-~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~-------~~   89 (237)
                      ...++|+|+|++|+|||||+++|.+. .++....+      +.+.......+.+  ++..+.+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            44689999999999999999998876 33322210      1111111112222  333467899999997       55


Q ss_pred             hchhhH-------hhhc-------------CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548           90 YRAVTS-------AYYR-------------GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR  149 (237)
Q Consensus        90 ~~~~~~-------~~~~-------------~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~  149 (237)
                      +..+..       .+++             .+++++|+.+.+. .+++.+.  ...+.... .++|+++|+||.|+....
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~  171 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLK  171 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHH
Confidence            555443       3332             2344555555332 1222222  12233333 468999999999987543


Q ss_pred             CC--CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548          150 AV--SAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       150 ~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~  194 (237)
                      ++  ..+++.+++..++++++++||+++ +++++|..+.+.+.+..+
T Consensus       172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p  217 (301)
T 2qnr_A          172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP  217 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence            32  245678888999999999999999 999999999999876655

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.72  E-value=9.3e-17  Score=130.12  Aligned_cols=126  Identities=13%  Similarity=0.098  Sum_probs=84.1

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhH-------hh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTS-------AY   97 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~   97 (237)
                      ...++|+|+|.+|+|||||+|+|++..+.... .+..+.......+...+  +.+.||||||...+.....       .+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            34789999999999999999999988764322 22223333333444455  5688999999876643222       12


Q ss_pred             --hcCCcEEEEEEECCChhhHH-HHHHHHHHHHHhcCCC--CcEEEEEeCCCCCCCcCCCHH
Q 026548           98 --YRGALGAVVVYDITKRQSFD-HVARWVEELRAHADSS--IRIILIGNKSDLVDMRAVSAE  154 (237)
Q Consensus        98 --~~~~d~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~--~p~vvv~nK~D~~~~~~~~~~  154 (237)
                        .+.+|++|+|+|++... +. ....|+..+......+  .|+++|+||+|+........+
T Consensus       115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~  175 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD  175 (270)
T ss_dssp             TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred             hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence              24799999999987532 32 2346667666554322  699999999998654443333

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.72  E-value=4.6e-17  Score=134.58  Aligned_cols=162  Identities=15%  Similarity=0.150  Sum_probs=95.5

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeE----EEE--------------------------------
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEF----QTR--------------------------------   68 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~----~~~--------------------------------   68 (237)
                      ....++|+|+|.+|+|||||+|+|++..+.+......+...    ...                                
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            34567999999999999999999999886332211111000    000                                


Q ss_pred             ---------------------E--EEECCEEEEEEEEeCCCcch-------------hchhhHhhhcCCcEEEEEEECCC
Q 026548           69 ---------------------T--VTINGKIIKAQIWDTAGQER-------------YRAVTSAYYRGALGAVVVYDITK  112 (237)
Q Consensus        69 ---------------------~--~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~  112 (237)
                                           .  +.... ...+.||||||...             +...+..++..+|++|+|+|..+
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~  179 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN  179 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCC-CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence                                 0  01111 13588999999653             44566778899999999999743


Q ss_pred             hh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcC---CC---CCCHHHHHHHH
Q 026548          113 RQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA---LN---GDNVDTAFFRL  185 (237)
Q Consensus       113 ~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~---~~gi~~~~~~l  185 (237)
                      .. .......+...+   ...+.|+++|+||+|+........+.........+..++++++   .+   +.|+.+++..+
T Consensus       180 ~~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~  256 (315)
T 1jwy_B          180 TDLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE  256 (315)
T ss_dssp             SCSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred             cchhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence            22 111111222222   2257899999999998764432222222111112245666654   44   78889888777


Q ss_pred             HHHHH
Q 026548          186 LQEIY  190 (237)
Q Consensus       186 ~~~i~  190 (237)
                      .+.+.
T Consensus       257 ~~~~~  261 (315)
T 1jwy_B          257 ILYFK  261 (315)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.71  E-value=1.5e-16  Score=139.98  Aligned_cols=115  Identities=17%  Similarity=0.119  Sum_probs=78.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC----------------------CCCcceeEEEEEEEECCEEEEEEEEeC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDS----------------------KSTIGVEFQTRTVTINGKIIKAQIWDT   84 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt   84 (237)
                      ..++|+|+|++|+|||||+++|+...-....                      ....+.......+...+  +.+.||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT   89 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT   89 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence            4689999999999999999999863211100                      00111111122333444  57889999


Q ss_pred             CCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        85 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      ||+..|...+..+++.+|++|+|+|+++...... ..++..+.   ..++|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            9999999888889999999999999987533222 22222222   25799999999999864

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.70  E-value=6.6e-16  Score=140.17  Aligned_cols=119  Identities=18%  Similarity=0.112  Sum_probs=83.2

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCC--CcC------C-----C-----CCCcceeEEEEEEEEC-----CEEEEEEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNE--FFF------D-----S-----KSTIGVEFQTRTVTIN-----GKIIKAQI   81 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~--~~~------~-----~-----~~~~~~~~~~~~~~~~-----~~~~~~~l   81 (237)
                      ..+..+|+|+|+.|+|||||+++|+...  +..      .     +     ....+.......+.++     +..+.+.|
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            3456899999999999999999997531  110      0     0     0111222222223332     23378999


Q ss_pred             EeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        82 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      |||||+..|...+...++.+|++|+|+|+++.........|.. ...   .++|+++++||+|+..
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCccc
Confidence            9999999999999999999999999999998655544444432 222   4799999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.70  E-value=3.8e-16  Score=141.63  Aligned_cols=117  Identities=18%  Similarity=0.204  Sum_probs=83.9

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcC--CCcCC---C-------------CCCcceeEEEEEEEECCEEEEEEEEeCCC
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKN--EFFFD---S-------------KSTIGVEFQTRTVTINGKIIKAQIWDTAG   86 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   86 (237)
                      ..+..+|+|+|++|+|||||+++|+..  .+...   .             ...++.......+..++  +.+.||||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            345789999999999999999999852  21100   0             01112222223344455  5788999999


Q ss_pred             cchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      +..+...+..+++.+|++|+|+|+++..+......|.. +..   .++|+++|+||+|+..
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            99999989999999999999999998766666555543 333   3789999999999864

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=1.8e-17  Score=141.07  Aligned_cols=85  Identities=25%  Similarity=0.260  Sum_probs=47.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEE--E-------------------EECC-EEEEEEEEeCCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRT--V-------------------TING-KIIKAQIWDTAG   86 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~l~Dt~G   86 (237)
                      ++|+++|.+|+|||||+|+|++........+..+.+.....  +                   .+++ ..+.+.||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999988733222233332222221  1                   1233 246799999999


Q ss_pred             cchh----chhhH---hhhcCCcEEEEEEECCCh
Q 026548           87 QERY----RAVTS---AYYRGALGAVVVYDITKR  113 (237)
Q Consensus        87 ~~~~----~~~~~---~~~~~~d~~ilv~d~~~~  113 (237)
                      ....    ..+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            7542    22333   346899999999999875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.69  E-value=1.3e-17  Score=137.25  Aligned_cols=134  Identities=16%  Similarity=0.122  Sum_probs=109.3

Q ss_pred             HHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChh-hHHHHH
Q 026548           43 QILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVA  120 (237)
Q Consensus        43 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~  120 (237)
                      +|+.+++.+.|. ..+.+|++..+. ..+..++   .+.+||+  ++++..++..+++++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888888888 778899985544 3322233   5789999  8999999999999999999999999987 788899


Q ss_pred             HHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHH
Q 026548          121 RWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--LFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       121 ~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      .|+..+..   .++|++||+||+|+...+.+  ++..+++..++  +++++|||++|.|++++|..+..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            99987765   47999999999999754322  45677777777  89999999999999999987654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.68  E-value=2.9e-17  Score=140.26  Aligned_cols=162  Identities=16%  Similarity=0.259  Sum_probs=81.8

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC--------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc----
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS--------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR----   91 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----   91 (237)
                      -....++|+|+|++|+|||||++.|++..+....        .++.........+...+....+.+||++|...+.    
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~  106 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN  106 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence            3344688999999999999999999988763221        1122111111111223333578899999975431    


Q ss_pred             ---hh------------------hHhhhcCCcEEEEEEECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548           92 ---AV------------------TSAYYRGALGAVVVYDITKR-QSFDHVA-RWVEELRAHADSSIRIILIGNKSDLVDM  148 (237)
Q Consensus        92 ---~~------------------~~~~~~~~d~~ilv~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~~~~  148 (237)
                         .+                  ...++.++++.+++|..... .+++.+. .|+..+.    .++|+|+|+||+|+...
T Consensus       107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTP  182 (418)
T ss_dssp             -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccH
Confidence               11                  12234455543444443322 2333332 4555543    37999999999998764


Q ss_pred             cCCCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          149 RAVSA--EDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       149 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      +++..  +.+.+.+...+++++++|++++.++.++|..+...+
T Consensus       183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            44433  567778888899999999999999998777666543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.62  E-value=7.3e-15  Score=129.76  Aligned_cols=116  Identities=16%  Similarity=0.121  Sum_probs=82.2

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCC------------------C----cCCCCCCcceeEEEEEEEECCEEEEEEEEe
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNE------------------F----FFDSKSTIGVEFQTRTVTINGKIIKAQIWD   83 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D   83 (237)
                      .+..+|+|+|+.++|||||..+|+...                  +    +......+++.-....+.+++  +.++|+|
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID  106 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD  106 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence            346799999999999999999985211                  0    011112223333334455566  6789999


Q ss_pred             CCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        84 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      |||+..|.......++.+|++|+|+|+...-..+...-|.. ...   .++|+++++||+|...
T Consensus       107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~---~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM---RATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSCC
T ss_pred             CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH---hCCceEEEEecccchh
Confidence            99999999999999999999999999988544444444433 333   4799999999999754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.62  E-value=5.8e-15  Score=123.49  Aligned_cols=145  Identities=19%  Similarity=0.114  Sum_probs=91.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCE---------------EEEEEEEeCCCcchhc--
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---------------IIKAQIWDTAGQERYR--   91 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~--   91 (237)
                      ++|+++|.+|+|||||+|+|++........+..+.......+.+++.               +..+.+|||||...+.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999987743333233333322233444442               1468899999987653  


Q ss_pred             --hh---hHhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHH------------------------------
Q 026548           92 --AV---TSAYYRGALGAVVVYDITKR----------QSFDHVARWVEEL------------------------------  126 (237)
Q Consensus        92 --~~---~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~------------------------------  126 (237)
                        .+   ....++.+|++++|+|+++.          +.+.++..+..++                              
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              22   22357899999999999851          2233322211111                              


Q ss_pred             ----------H-------------------Hh-cCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCC
Q 026548          127 ----------R-------------------AH-ADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASAL  173 (237)
Q Consensus       127 ----------~-------------------~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  173 (237)
                                .                   .+ .....|+++++|+.|..-......+.+++++...+.+++.+||+
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                      1                   01 11359999999999864211233566778888889999999965

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.62  E-value=2e-16  Score=132.94  Aligned_cols=159  Identities=14%  Similarity=0.134  Sum_probs=94.2

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEE---------------------------------------
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQ---------------------------------------   66 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------   66 (237)
                      ...++|+|+|.+|+|||||+|+|++..+.+.....++....                                       
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            44679999999999999999999998875322111110000                                       


Q ss_pred             ----------EEEEEEC-CEEEEEEEEeCCCcc-------------hhchhhHhhhcCCc-EEEEEEECCChhhHHHHHH
Q 026548           67 ----------TRTVTIN-GKIIKAQIWDTAGQE-------------RYRAVTSAYYRGAL-GAVVVYDITKRQSFDHVAR  121 (237)
Q Consensus        67 ----------~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~  121 (237)
                                ...+.+. .....+.||||||..             .+..+...++...+ ++++|++++..........
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                      0001110 002468899999953             34456666776555 5555666654322222222


Q ss_pred             HHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH--HHHHcC-CeEEEEcCCCCCCHHHHHHHHHH
Q 026548          122 WVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE--FAEDQG-LFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       122 ~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      +   +......+.|+++|+||+|+........+....  +....+ .+++++||+++.|++++++++.+
T Consensus       189 i---~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 V---AKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             H---HHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             H---HHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2   233333578999999999987543322221110  000123 24778999999999999988876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.59  E-value=4.2e-16  Score=122.26  Aligned_cols=155  Identities=13%  Similarity=0.052  Sum_probs=95.1

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCC------CCCCcce--------eEEEEEEEECC----------------EE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFD------SKSTIGV--------EFQTRTVTING----------------KI   76 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~------~~~~~~~--------~~~~~~~~~~~----------------~~   76 (237)
                      ...+|+|+|.+|+|||||+++|........      ..+..+.        ......+...+                ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            357899999999999999999986521110      0011000        00001111100                12


Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDA  156 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~  156 (237)
                      +.+.+|||+|.-....   .+....+.+++|+|+.+....  ...+...      .+.|+++|+||+|+........+..
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence            4577999998511111   111256889999998764321  1111111      1478899999999865433456667


Q ss_pred             HHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548          157 VEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       157 ~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  192 (237)
                      .+.+...  +++++++||++|.|++++|++|.+.+...
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            6666654  46899999999999999999998876443

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.57  E-value=1e-15  Score=128.73  Aligned_cols=104  Identities=12%  Similarity=0.001  Sum_probs=69.4

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC--HH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS--AE  154 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~--~~  154 (237)
                      +.+.||||||...   .....+..+|++|+|+|....+....+..+        -.+.|++||+||+|+.......  .+
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence            5688999999433   233456899999999998765443222110        0246899999999986422110  11


Q ss_pred             HHHHHHH-------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548          155 DAVEFAE-------DQGLFFSEASALNGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       155 ~~~~~~~-------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~  191 (237)
                      +..+...       .++.+++.+||++|.|+++++++|.+.+..
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            1111111       125789999999999999999999887755

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.56  E-value=3.1e-15  Score=132.22  Aligned_cols=122  Identities=20%  Similarity=0.233  Sum_probs=82.8

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCCCc---CCCCCCcceeEEEEE-----EEEC-----------------C---
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFF---FDSKSTIGVEFQTRT-----VTIN-----------------G---   74 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~---~~~~~~~~~~~~~~~-----~~~~-----------------~---   74 (237)
                      ......++|+|+|.+|+|||||+|+|++..+.   ....++++.......     +..+                 +   
T Consensus        60 ~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~  139 (550)
T 2qpt_A           60 ADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF  139 (550)
T ss_dssp             TTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CC
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence            44556789999999999999999999998864   222233211110000     0000                 0   


Q ss_pred             ---EE---------EEEEEEeCCCcch-----------hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC
Q 026548           75 ---KI---------IKAQIWDTAGQER-----------YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD  131 (237)
Q Consensus        75 ---~~---------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~  131 (237)
                         ..         ..+.||||||...           +...+..++..+|++|+|+|+++.........|+..+..   
T Consensus       140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---  216 (550)
T 2qpt_A          140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---  216 (550)
T ss_dssp             CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---
T ss_pred             cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---
Confidence               00         2478999999764           445667788999999999999875444555566655443   


Q ss_pred             CCCcEEEEEeCCCCCC
Q 026548          132 SSIRIILIGNKSDLVD  147 (237)
Q Consensus       132 ~~~p~vvv~nK~D~~~  147 (237)
                      .+.|+++|+||+|+..
T Consensus       217 ~~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          217 HEDKIRVVLNKADMVE  232 (550)
T ss_dssp             CGGGEEEEEECGGGSC
T ss_pred             cCCCEEEEEECCCccC
Confidence            4689999999999875

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.56  E-value=8.9e-15  Score=135.18  Aligned_cols=117  Identities=20%  Similarity=0.222  Sum_probs=85.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcC----------------CCCC--CcceeEEEEEEE------------ECCE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFF----------------DSKS--TIGVEFQTRTVT------------INGK   75 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~------------~~~~   75 (237)
                      ....+|+|+|++++|||||+++|+...-..                ....  |+........+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            457899999999999999999998642110                0111  211111222222            1334


Q ss_pred             EEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV  146 (237)
Q Consensus        76 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~  146 (237)
                      .+.+.||||||+..|...+..+++.+|++|+|||+++..+++....|.....    .++|+++++||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            6789999999999999999999999999999999999877777665654332    478999999999985

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.55  E-value=1.6e-14  Score=121.52  Aligned_cols=152  Identities=16%  Similarity=0.130  Sum_probs=92.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECC-------------------EEEEEEEEeCCCcch
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-------------------KIIKAQIWDTAGQER   89 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~Dt~G~~~   89 (237)
                      ++|+++|.+|+|||||+|+|.+........+..+.........+++                   ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5899999999999999999998653222222222222222222221                   234688999999766


Q ss_pred             hc----hh---hHhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHH--------------------------
Q 026548           90 YR----AV---TSAYYRGALGAVVVYDITKR----------QSFDHVARWVEEL--------------------------  126 (237)
Q Consensus        90 ~~----~~---~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~--------------------------  126 (237)
                      ..    .+   ....++.+|++++|+|+.+.          +.+.++..+..++                          
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            43    12   23357899999999999751          1222211110000                          


Q ss_pred             --------------------------------HHhc-CCCCcEEEEEeCCCCC--CC-cCCCHHHHHHHHHHcCCeEEEE
Q 026548          127 --------------------------------RAHA-DSSIRIILIGNKSDLV--DM-RAVSAEDAVEFAEDQGLFFSEA  170 (237)
Q Consensus       127 --------------------------------~~~~-~~~~p~vvv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~  170 (237)
                                                      ..+. ....|+++++||.|..  .. .....+.+.+++...+.+++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                                            0000 1247999999999842  21 1234567778888889999999


Q ss_pred             cCCCCCCHHH
Q 026548          171 SALNGDNVDT  180 (237)
Q Consensus       171 Sa~~~~gi~~  180 (237)
                      ||+...++.+
T Consensus       242 SAk~E~el~e  251 (368)
T 2dby_A          242 SARLEAELAE  251 (368)
T ss_dssp             CHHHHHHHHT
T ss_pred             echhHHHHHH
Confidence            9987554443

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.55  E-value=3.8e-17  Score=128.69  Aligned_cols=154  Identities=16%  Similarity=0.104  Sum_probs=91.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEE------------EEEEEEC-CEE-----------------
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQ------------TRTVTIN-GKI-----------------   76 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~-----------------   76 (237)
                      ..++|+|+|.+|+|||||+++|+...+...+.+++..++.            ...+.++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999977554322233322221            1111111 100                 


Q ss_pred             --EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHH
Q 026548           77 --IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAE  154 (237)
Q Consensus        77 --~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~  154 (237)
                        ..+.++|++|.-...   ..+-...+.++.++|.........  .+...      .+.|.+||+||+|+........+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence              124455555521110   011123345566666432111100  00011      14678999999998764445667


Q ss_pred             HHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 026548          155 DAVEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       155 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~~~i~~  191 (237)
                      +..+++...  +++++++||++|.|++++|+++.+.+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            777777754  5789999999999999999999887654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.3e-13  Score=115.84  Aligned_cols=137  Identities=17%  Similarity=0.100  Sum_probs=95.3

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-------hhhHhh
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-------AVTSAY   97 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~   97 (237)
                      .....+|+++|.||+|||||+|+|++........+..+.+.....+.+++.  +++|+||||.....       ......
T Consensus        69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~  146 (376)
T 4a9a_A           69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAV  146 (376)
T ss_dssp             BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHH
T ss_pred             ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHH
Confidence            444679999999999999999999998766666678888888888888884  57799999954321       112345


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC--------CcCCCHHHHHHHHHHcCC
Q 026548           98 YRGALGAVVVYDITKRQSFDHVARWVEELRAHA--DSSIRIILIGNKSDLVD--------MRAVSAEDAVEFAEDQGL  165 (237)
Q Consensus        98 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~--------~~~~~~~~~~~~~~~~~~  165 (237)
                      ++.+|++++|+|++++...  .......+....  ....|.++++||.|..+        ......++...+...+.+
T Consensus       147 i~~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l  222 (376)
T 4a9a_A          147 ARTCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI  222 (376)
T ss_dssp             HHHCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred             HHhcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence            6899999999999986432  222222332221  14578889999999643        123456666666665554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.52  E-value=3.9e-15  Score=124.76  Aligned_cols=102  Identities=12%  Similarity=-0.001  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDA  156 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~  156 (237)
                      +.+.|+||+|....   .......+|++++|+|+..+.....+..      ..  ...|.++|+||+|+...... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~------~i--l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR------GI--IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH------HH--HhcCCEEEEeeecCCCchhH-HHHH
Confidence            45789999995322   2345678999999999987543222211      11  24688999999998642110 0011


Q ss_pred             HHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          157 VEFAE----------DQGLFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       157 ~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      .++..          .++.+++.+||+++.|+++++++|.+.+.
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            12211          12457899999999999999999988764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.47  E-value=5.4e-14  Score=127.36  Aligned_cols=157  Identities=16%  Similarity=0.153  Sum_probs=97.6

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCccee----------------------------------------
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVE----------------------------------------   64 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~----------------------------------------   64 (237)
                      ....++|+|+|.+++|||||+|+|++..+.+.....++..                                        
T Consensus        48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~  127 (772)
T 3zvr_A           48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  127 (772)
T ss_dssp             GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence            3456799999999999999999999987743322111110                                        


Q ss_pred             -----------EEEEEEEECCEEEEEEEEeCCCcch-------------hchhhHhhh-cCCcEEEEEEECCChhhHHHH
Q 026548           65 -----------FQTRTVTINGKIIKAQIWDTAGQER-------------YRAVTSAYY-RGALGAVVVYDITKRQSFDHV  119 (237)
Q Consensus        65 -----------~~~~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~  119 (237)
                                 .....+..++. ..+.|+||||...             ...+...++ ..+|++++|+|++......+.
T Consensus       128 ~~g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~  206 (772)
T 3zvr_A          128 VTGTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA  206 (772)
T ss_dssp             HHCSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred             hcCCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence                       00111111111 2478999999433             222334444 588999999999874333332


Q ss_pred             HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH----cC-CeEEEEcCCCCCCHHHHHHHHHH
Q 026548          120 ARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED----QG-LFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       120 ~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      ..++..+.   ..+.|+++|+||+|+......... ... ...    .+ .+++.+||++|.|++++++.+.+
T Consensus       207 l~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          207 LKIAKEVD---PQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             HHHHHHHC---TTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             HHHHHHHH---hcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            22333332   257899999999998764433222 111 111    12 34677899999999998888776

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.47  E-value=1.3e-14  Score=130.48  Aligned_cols=114  Identities=18%  Similarity=0.175  Sum_probs=78.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCC--------CcCCC---C-------CCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNE--------FFFDS---K-------STIGVEFQTRTVTINGKIIKAQIWDTAGQER   89 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~--------~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   89 (237)
                      ..+|+|+|+.++|||||..+|+...        .....   +       ..+++......+.+++  +.++|+|||||..
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~D   79 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMD   79 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSS
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHH
Confidence            4589999999999999999986321        10000   0       0111111122222333  6789999999999


Q ss_pred             hchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        90 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      |.......++.+|++|+|+|+...-..+....|.. ...   .++|.++++||+|...
T Consensus        80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~---~~lp~i~~INKmDr~~  133 (638)
T 3j25_A           80 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRK---MGIPTIFFINKIDQNG  133 (638)
T ss_dssp             THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHH---HTCSCEECCEECCSSS
T ss_pred             HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCeEEEEecccccc
Confidence            99999999999999999999987533333333333 333   2689999999999754

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.47  E-value=9.8e-13  Score=119.74  Aligned_cols=120  Identities=18%  Similarity=0.132  Sum_probs=81.7

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCC--------CcC----------CCCCCcceeEEEEEEEEC-----CEEEEEE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNE--------FFF----------DSKSTIGVEFQTRTVTIN-----GKIIKAQ   80 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~--------~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~   80 (237)
                      +.++..+|+|+|+.++|||||..+|+...        ...          .....+++.-....+.+.     ...+.++
T Consensus         9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN   88 (709)
T 4fn5_A            9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN   88 (709)
T ss_dssp             CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred             chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence            44677899999999999999999986321        110          111112222222223332     1347899


Q ss_pred             EEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        81 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      |+|||||..|.......++-+|++|+|+|+...-..+...-|......    ++|.++++||+|...
T Consensus        89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred             EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence            999999999999999999999999999999885444443344444333    799999999999743

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.46  E-value=6.4e-14  Score=117.08  Aligned_cols=103  Identities=13%  Similarity=0.036  Sum_probs=64.9

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC--HH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS--AE  154 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~--~~  154 (237)
                      +.+.||||||......   .....+|++++|+|++.......+..   ..     .+.|.++|+||+|+.......  .+
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            4688999999665433   24689999999999876533221111   00     136789999999986421110  01


Q ss_pred             HHHHHHHHc-------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          155 DAVEFAEDQ-------GLFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       155 ~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      +..+.....       ..+++++||++|.|+++++++|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            122212222       356899999999999999999988764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.43  E-value=4.3e-13  Score=107.68  Aligned_cols=111  Identities=14%  Similarity=-0.051  Sum_probs=66.8

Q ss_pred             EEEEEEeCCCcchhchhhH------hhhcCCcEEEEEEECCChhhHHHHHHHHH-HHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548           77 IKAQIWDTAGQERYRAVTS------AYYRGALGAVVVYDITKRQSFDHVARWVE-ELRAHADSSIRIILIGNKSDLVDMR  149 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~vvv~nK~D~~~~~  149 (237)
                      +.+.||||||.........      ..+.. +++++++|+.............. ........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            4688999999876543321      23455 88888888754222222211111 1111111368999999999986532


Q ss_pred             CCCHHHHHHH----------------------------HHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          150 AVSAEDAVEF----------------------------AEDQG--LFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       150 ~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      +  .++..++                            +..++  .+++++||+++.|+++++++|.+.+.
T Consensus       188 ~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          188 E--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             H--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             c--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            1  1111111                            23333  47999999999999999998877653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.37  E-value=9e-13  Score=108.29  Aligned_cols=97  Identities=15%  Similarity=0.130  Sum_probs=79.6

Q ss_pred             cchhchhhHhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC-HHHHHHHHHHcC
Q 026548           87 QERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS-AEDAVEFAEDQG  164 (237)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~-~~~~~~~~~~~~  164 (237)
                      ++++..+...++.++|++++|||++++. ++..+..|+..+..   .++|++||+||+|+.....+. .++..+++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            6777778888999999999999999986 88888899887665   479999999999997543222 345566677788


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHH
Q 026548          165 LFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       165 ~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ++++++||++|.|++++|..+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHhhcc
Confidence            9999999999999999997654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.33  E-value=1.4e-12  Score=108.71  Aligned_cols=103  Identities=15%  Similarity=0.081  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDA  156 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~  156 (237)
                      +.+.|+||+|.....   ......+|.+++++|....+..+.+..+   +.     ..+.++++||+|+...........
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence            468899999965432   2345789999999998654322111111   11     235577789999743221111122


Q ss_pred             HHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          157 VEFAED----------QGLFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       157 ~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      +++...          +..+++.+||+++.|++++++.|.+.+.
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            233221          1456899999999999999988877653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.30  E-value=9.7e-11  Score=99.05  Aligned_cols=87  Identities=16%  Similarity=0.138  Sum_probs=64.0

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCC-cCCCCCCcceeEEEEEEEECCE---------------EEEEEEEeCCCcch
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEF-FFDSKSTIGVEFQTRTVTINGK---------------IIKAQIWDTAGQER   89 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~   89 (237)
                      ....+|+++|++|+|||||+|+|++... .....|..+.+.....+.+++.               +..+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            3467999999999999999999999776 4444466666666666667651               13578999999433


Q ss_pred             -------hchhhHhhhcCCcEEEEEEECCC
Q 026548           90 -------YRAVTSAYYRGALGAVVVYDITK  112 (237)
Q Consensus        90 -------~~~~~~~~~~~~d~~ilv~d~~~  112 (237)
                             ........++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   22234556789999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.27  E-value=3.4e-12  Score=107.80  Aligned_cols=88  Identities=14%  Similarity=0.104  Sum_probs=53.1

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCE---------------EEEEEEEeCCCcchh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---------------IIKAQIWDTAGQERY   90 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~   90 (237)
                      ...++|+++|.+|+|||||+|+|.+..+.....++.+.+.....+.+++.               +..+.+|||||...+
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            34579999999999999999999998764444455555555555555442               235889999997765


Q ss_pred             ch-------hhHhhhcCCcEEEEEEECCCh
Q 026548           91 RA-------VTSAYYRGALGAVVVYDITKR  113 (237)
Q Consensus        91 ~~-------~~~~~~~~~d~~ilv~d~~~~  113 (237)
                      ..       .+..+++.+|++++|+|+.+.
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            43       455678999999999998753

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.18  E-value=1.4e-11  Score=94.41  Aligned_cols=105  Identities=8%  Similarity=-0.027  Sum_probs=68.8

Q ss_pred             CCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHH----Hhc-CCCCcEEEEEeCC-CCCCCcCCCHHHHHH
Q 026548           85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR----AHA-DSSIRIILIGNKS-DLVDMRAVSAEDAVE  158 (237)
Q Consensus        85 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~----~~~-~~~~p~vvv~nK~-D~~~~~~~~~~~~~~  158 (237)
                      +|+...+.+|..|+.++|++|||+|++|.+-.+ .+..+..+.    ... ..++|++|++||. |+.+  ..+..++.+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence            378899999999999999999999999864332 223222222    211 1579999999995 6754  455555544


Q ss_pred             HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548          159 FAED----QGLFFSEASALNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       159 ~~~~----~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  192 (237)
                      ....    ....+..|||++|+|+.+.++||...+..+
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            3322    234488899999999999999998766443

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.04  E-value=3.1e-10  Score=91.14  Aligned_cols=107  Identities=7%  Similarity=-0.021  Sum_probs=72.9

Q ss_pred             CCCcchhchhhHhhhcCCcEEEEEEECCChhhHH---HHHHHHHHHHHhc-CCCCcEEEEEeC-CCCCCCcCCCHHHHHH
Q 026548           84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFD---HVARWVEELRAHA-DSSIRIILIGNK-SDLVDMRAVSAEDAVE  158 (237)
Q Consensus        84 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~---~~~~~~~~~~~~~-~~~~p~vvv~nK-~D~~~~~~~~~~~~~~  158 (237)
                      .+|++..+.+|..|+.++|++|||+|++|.+-++   .+......+.... ..++|++|++|| -|+.+  ..+..++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence            4578899999999999999999999999865332   2221112221211 257999999997 57754  455555444


Q ss_pred             HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548          159 FAED----QGLFFSEASALNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       159 ~~~~----~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  192 (237)
                      ....    ....+..|||.+|+|+.+.++||.+.+..+
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            3322    223488899999999999999999876443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.86  E-value=8.1e-10  Score=96.28  Aligned_cols=150  Identities=13%  Similarity=0.085  Sum_probs=85.1

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHh------cCCCcCC----CCCCc-----------ceeEEEEEE--------------
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFT------KNEFFFD----SKSTI-----------GVEFQTRTV--------------   70 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~------~~~~~~~----~~~~~-----------~~~~~~~~~--------------   70 (237)
                      .....|+|+|.+|+||||+++.|.      +.+....    +.+..           +..+.....              
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345689999999999999999998      4332111    00100           011111000              


Q ss_pred             -EECCEEEEEEEEeCCCcchhch-hh---Hhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeC
Q 026548           71 -TINGKIIKAQIWDTAGQERYRA-VT---SAY--YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRI-ILIGNK  142 (237)
Q Consensus        71 -~~~~~~~~~~l~Dt~G~~~~~~-~~---~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-vvv~nK  142 (237)
                       ...+  +.+.|+||||...... ++   ...  +..+|.+++|+|+.........   ...+..    .+|+ +||+||
T Consensus       179 ~~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~----~~~i~gvVlNK  249 (504)
T 2j37_W          179 FKNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD----KVDVASVIVTK  249 (504)
T ss_dssp             HHHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH----HHCCCCEEEEC
T ss_pred             HHHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh----hcCceEEEEeC
Confidence             0022  4678999999653221 11   111  2378999999999875432121   222222    2564 899999


Q ss_pred             CCCCCCcCCCHHHHHHHHHHcCCeE------------------EEEcCCCCCC-HHHHHHHHHHH
Q 026548          143 SDLVDMRAVSAEDAVEFAEDQGLFF------------------SEASALNGDN-VDTAFFRLLQE  188 (237)
Q Consensus       143 ~D~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~~~~~l~~~  188 (237)
                      +|......    .+.......+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       250 ~D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          250 LDGHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TTSCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CccccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99764221    2333444555553                  2368888988 88888777654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.86  E-value=6.5e-09  Score=87.52  Aligned_cols=96  Identities=19%  Similarity=0.253  Sum_probs=73.7

Q ss_pred             CcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHH----HHH
Q 026548           86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVE----FAE  161 (237)
Q Consensus        86 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~----~~~  161 (237)
                      ..+.|..++..+.+.+|++++|+|++++.     ..|...+.... .+.|+++|+||+|+.... ...+...+    ++.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            46789999999999999999999999853     34555565554 378999999999986532 33334433    356


Q ss_pred             HcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 026548          162 DQGL---FFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       162 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      ..+.   .++.+||++|.|++++++.+.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6777   79999999999999999888654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.81  E-value=2.6e-10  Score=96.12  Aligned_cols=139  Identities=17%  Similarity=0.137  Sum_probs=80.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC------CCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hh
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN------EFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VT   94 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~   94 (237)
                      .+|+++|.+|+|||||+|+|++.      .......+.++.  ....+.++.   .+.++||||......        ..
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~--~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL--DMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSC--EEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEE--eeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999976      222222233332  333344443   267999999543221        11


Q ss_pred             Hhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcC
Q 026548           95 SAYY--RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASA  172 (237)
Q Consensus        95 ~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  172 (237)
                      ..++  +..|.++++++....-.+..+..    +......+.|+++++||.|..+.... ......+.+..+..+...++
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence            2222  67899999999843211111100    11122256899999999998654332 22233445556666655555


Q ss_pred             CCCCC
Q 026548          173 LNGDN  177 (237)
Q Consensus       173 ~~~~g  177 (237)
                      ....+
T Consensus       313 ~~~~~  317 (369)
T 3ec1_A          313 RYAAE  317 (369)
T ss_dssp             GGTTT
T ss_pred             hhhhh
Confidence            54433

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.81  E-value=7.9e-09  Score=88.04  Aligned_cols=140  Identities=16%  Similarity=0.189  Sum_probs=68.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCC--CcceeEEEEEEEEC--CEEEEEEEEeCCCcchhc------------
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKS--TIGVEFQTRTVTIN--GKIIKAQIWDTAGQERYR------------   91 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~------------   91 (237)
                      .++++|+|++|+|||||++.|.+..+......  ..+.......+...  +-...+.++|++|.....            
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            46799999999999999999998754321111  11111222222222  222367899998743210            


Q ss_pred             --hhh----Hhhh---------cC--CcE-EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC-
Q 026548           92 --AVT----SAYY---------RG--ALG-AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS-  152 (237)
Q Consensus        92 --~~~----~~~~---------~~--~d~-~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~-  152 (237)
                        ..+    ..+.         ..  +|+ ++++.|....-+..++    ..+.... .++|+|+|+||+|.....+.. 
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di----eilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~  196 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL----VTMKKLD-SKVNIIPIIAKADAISKSELTK  196 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH----HHHHHTC-SCSEEEEEESCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH----HHHHHHh-hCCCEEEEEcchhccchHHHHH
Confidence              011    1110         11  233 5556666543333232    2222223 579999999999976432210 


Q ss_pred             -HHHHHHHHHHcCCeEEEEcC
Q 026548          153 -AEDAVEFAEDQGLFFSEASA  172 (237)
Q Consensus       153 -~~~~~~~~~~~~~~~~~~Sa  172 (237)
                       ...+.+.....|+.++.+|.
T Consensus       197 l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          197 FKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHcCCcEEecCC
Confidence             11122212234566666663

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.74  E-value=2.3e-10  Score=96.34  Aligned_cols=134  Identities=16%  Similarity=0.150  Sum_probs=73.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcC-----CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchh--------hH
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFF-----DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV--------TS   95 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~   95 (237)
                      .+|+++|.+|+|||||+|+|.+.....     ......+++.....+.+...   +.++||||......+        ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            579999999999999999998763211     01111222223333444432   679999995432211        11


Q ss_pred             hh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHH-HHHHHcCCeEEEEc
Q 026548           96 AY--YRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAV-EFAEDQGLFFSEAS  171 (237)
Q Consensus        96 ~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~S  171 (237)
                      .+  ....+.++++++.........+..    +......+.|+++++||.|..+...  .+.+. .+.+..+..+...+
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~--~~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK--LEKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE--HHHHHHHHHHHBTTTBCSSC
T ss_pred             HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc--HHHHHHHHHHHhCCccCCCc
Confidence            11  257788899998743211111100    1111224689999999999876432  33333 34445665544444

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.71  E-value=1.3e-08  Score=82.13  Aligned_cols=137  Identities=18%  Similarity=0.186  Sum_probs=70.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-------CCcceeEEEEEEEEC--CEEEEEEEEeCCCcchhc------h
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-------STIGVEFQTRTVTIN--GKIIKAQIWDTAGQERYR------A   92 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~------~   92 (237)
                      .++++|+|+.|+|||||++.|.+...+....       ...........+...  +-...+.++|++|.....      .
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            4789999999999999999998754332110       000000011111111  111257899999832110      0


Q ss_pred             hhHh----------------------hhcCCcEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548           93 VTSA----------------------YYRGALGAVVVYDIT-KRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR  149 (237)
Q Consensus        93 ~~~~----------------------~~~~~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~  149 (237)
                      ....                      .+..+++.++++|.. .+-...+ ...+..+..   . +++++|++|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHH
Confidence            0000                      123468889999854 2222112 222233332   3 8999999999976432


Q ss_pred             CC--CHHHHHHHHHHcCCeEEE
Q 026548          150 AV--SAEDAVEFAEDQGLFFSE  169 (237)
Q Consensus       150 ~~--~~~~~~~~~~~~~~~~~~  169 (237)
                      +.  ..+.+++.....++.++.
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            21  122334445566776554

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.71  E-value=1.3e-07  Score=80.41  Aligned_cols=155  Identities=14%  Similarity=0.152  Sum_probs=79.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCC-CcceeEEE-EEEEECCEEEEEEEEeCCCcchhchhhHhh-----hcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKS-TIGVEFQT-RTVTINGKIIKAQIWDTAGQERYRAVTSAY-----YRGA  101 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-----~~~~  101 (237)
                      ..++|+|++|||||||+|.|.+...+....- ..+..... ..+.-......+.+||++|..........+     +...
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence            4799999999999999999998543222111 11111000 011111111146799999854222112222     2334


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC-------CCcCCCHHHHH----HHH----HHcC--
Q 026548          102 LGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV-------DMRAVSAEDAV----EFA----EDQG--  164 (237)
Q Consensus       102 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~-------~~~~~~~~~~~----~~~----~~~~--  164 (237)
                      +.+++ ++....+ -.++ .....+..   .+.|+++|.||.|+.       +-.....+...    ++.    .+.+  
T Consensus       150 ~~~~~-lS~G~~~-kqrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~  223 (413)
T 1tq4_A          150 DFFII-ISATRFK-KNDI-DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA  223 (413)
T ss_dssp             SEEEE-EESSCCC-HHHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCeEE-eCCCCcc-HHHH-HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            55554 7776311 1111 12222322   368999999999863       11122233333    332    1222  


Q ss_pred             -CeEEEEcC--CCCCCHHHHHHHHHHHH
Q 026548          165 -LFFSEASA--LNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       165 -~~~~~~Sa--~~~~gi~~~~~~l~~~i  189 (237)
                       ..++.+|+  ..+.|++++.+.+.+.+
T Consensus       224 ~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          224 EPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             SCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             CCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence             25788899  55566887776665543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.68  E-value=2.7e-08  Score=80.67  Aligned_cols=102  Identities=16%  Similarity=0.070  Sum_probs=70.5

Q ss_pred             EEeCCCcc-hhchhhHhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHH
Q 026548           81 IWDTAGQE-RYRAVTSAYYRGALGAVVVYDITKRQSFD--HVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAV  157 (237)
Q Consensus        81 l~Dt~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~  157 (237)
                      +...||+. .........+..+|++++|+|+.++.+..  .+..|+        .+.|.++|+||+|+....  ..+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence            44578865 34455666789999999999999987654  333332        378999999999997521  122334


Q ss_pred             HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548          158 EFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       158 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  192 (237)
                      ++....+++++.+||.++.|+++++..+.+.+.+.
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            44455678999999999999999998887776543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.67  E-value=1.8e-08  Score=84.89  Aligned_cols=97  Identities=21%  Similarity=0.241  Sum_probs=71.8

Q ss_pred             CcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHH----HH
Q 026548           86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEF----AE  161 (237)
Q Consensus        86 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~----~~  161 (237)
                      .++.|...+..+++.++++++|+|++++.+     .|...+.... .+.|+++|+||+|+... ....+...++    +.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence            478899999998899999999999998663     3444444443 37899999999998653 2233334433    55


Q ss_pred             HcCC---eEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          162 DQGL---FFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       162 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      ..+.   .++.+||++|.|++++++.+.+..
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            6676   689999999999999998886543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.46  E-value=2.2e-07  Score=79.54  Aligned_cols=90  Identities=18%  Similarity=0.107  Sum_probs=54.8

Q ss_pred             EEEEEEeCCCcchhchh----hH--hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           77 IKAQIWDTAGQERYRAV----TS--AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~----~~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      +.+.|+||+|.......    ..  .....+|.+++|+|+..........   ..+...   -.+..||+||.|...   
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~---~~i~gVIlTKlD~~~---  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA---TPIGSIIVTKLDGSA---  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS---CTTEEEEEECCSSCS---
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh---CCCeEEEEECCCCcc---
Confidence            45789999994432211    11  1223678999999998754332222   333332   235679999999753   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548          151 VSAEDAVEFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                       ....+..+....+.|+.+++.  |+++
T Consensus       254 -~gG~~ls~~~~~g~PI~fig~--Ge~v  278 (443)
T 3dm5_A          254 -KGGGALSAVAATGAPIKFIGT--GEKI  278 (443)
T ss_dssp             -SHHHHHHHHHTTCCCEEEEEC--SSST
T ss_pred             -cccHHHHHHHHHCCCEEEEEc--CCCh
Confidence             234466666778899887764  5433

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.46  E-value=1.4e-07  Score=76.40  Aligned_cols=58  Identities=22%  Similarity=0.377  Sum_probs=36.7

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQE   88 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   88 (237)
                      ...++|+++|.||+|||||+|+|.+....... .+.++..  ...+.++.   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS--QQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeee--eEEEEeCC---CEEEEECcCcC
Confidence            34689999999999999999999987743332 2332222  22333433   46799999954

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.40  E-value=8.9e-08  Score=76.82  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=35.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER   89 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   89 (237)
                      ++++++|.+|+|||||+|+|.+....... ++.+.+.....+.++.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            69999999999999999999987753322 2222222222233332   467999999654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.20  E-value=4.5e-06  Score=71.52  Aligned_cols=84  Identities=15%  Similarity=0.067  Sum_probs=49.3

Q ss_pred             EEEEEEeCCCcchhch-hh---Hh--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCCC
Q 026548           77 IKAQIWDTAGQERYRA-VT---SA--YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSI-R-IILIGNKSDLVDM  148 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~-~~---~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~vvv~nK~D~~~~  148 (237)
                      +.+.|+||||...... +.   ..  .+..+|.+++|+|+......   ......+.    ..+ | ..+|+||+|....
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~----~~~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQAKAFK----EAVGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHHHHHH----TTSCSCEEEEEECSSSCST
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHHHHHh----hcccCCeEEEEeCCCCccc
Confidence            4578999999654221 11   11  12368999999998765321   11122222    235 5 7899999997531


Q ss_pred             cCCCHHHHHHHHHHcCCeEEEEc
Q 026548          149 RAVSAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~S  171 (237)
                          ...+..+....+.++..++
T Consensus       254 ----~g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          254 ----GGGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             ----THHHHHHHHHSSCCEEEEC
T ss_pred             ----hHHHHHHHHHHCCCEEEee
Confidence                2234556677787766553

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.17  E-value=1e-06  Score=78.18  Aligned_cols=65  Identities=17%  Similarity=0.084  Sum_probs=39.9

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCC-cceeEEEEEE--EE-CCEEEEEEEEeCCCcch
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST-IGVEFQTRTV--TI-NGKIIKAQIWDTAGQER   89 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~l~Dt~G~~~   89 (237)
                      ....++|+|+|.||+|||||+|+|.+.........+ .+.+.....+  .+ ......+.|+||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            456789999999999999999999988743221111 1111111111  11 11123578999999543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.14  E-value=9.3e-07  Score=70.86  Aligned_cols=91  Identities=18%  Similarity=0.102  Sum_probs=61.7

Q ss_pred             CCCcchh-chhhHhhhcCCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHH
Q 026548           84 TAGQERY-RAVTSAYYRGALGAVVVYDITKRQSFDH--VARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFA  160 (237)
Q Consensus        84 t~G~~~~-~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~  160 (237)
                      .||+... .......+.++|++|+|+|+.++.+...  +. +       .  ++|.++|+||+|+....  ..+...++.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-l-------l--~k~~iivlNK~DL~~~~--~~~~~~~~~   71 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-F-------S--RKETIILLNKVDIADEK--TTKKWVEFF   71 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-C-------T--TSEEEEEEECGGGSCHH--HHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-h-------c--CCCcEEEEECccCCCHH--HHHHHHHHH
Confidence            3665432 2345667899999999999998766542  21 1       1  68999999999997521  122334445


Q ss_pred             HHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          161 EDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       161 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      +..+.++ .+||.++.|+++++..+..
T Consensus        72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           72 KKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            5668888 9999999999988876644

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.13  E-value=3.9e-07  Score=77.94  Aligned_cols=90  Identities=17%  Similarity=0.106  Sum_probs=55.5

Q ss_pred             EEEEEEeCCCcch--hch-h---hHh--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548           77 IKAQIWDTAGQER--YRA-V---TSA--YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM  148 (237)
Q Consensus        77 ~~~~l~Dt~G~~~--~~~-~---~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~  148 (237)
                      +.+.|+||||...  ... +   ...  ..-..|.+++|+|+........+   ...+...   -.+..||+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc-
Confidence            4577999999543  111 1   111  11256899999999865433222   2333332   245789999999753 


Q ss_pred             cCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548          149 RAVSAEDAVEFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                         ....+..+....+.|+.+++.  |+++
T Consensus       253 ---~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ---KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence               344566777778999888874  6554

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.06  E-value=5e-06  Score=67.79  Aligned_cols=91  Identities=18%  Similarity=0.138  Sum_probs=56.9

Q ss_pred             EEEEEEeCCCcch--hch-hhH-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 026548           77 IKAQIWDTAGQER--YRA-VTS-----AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVD  147 (237)
Q Consensus        77 ~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~  147 (237)
                      +.+.|+||||...  ... +..     ..+..+|.+++|+|+.....   .......+..    ..+ ..+|+||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            4578999999765  221 211     12457899999999865322   1122222322    355 678999999643


Q ss_pred             CcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                          ....+..+....+.|+..++  .|.++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                23456677788899988876  5666654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.98  E-value=1.7e-06  Score=70.75  Aligned_cols=89  Identities=16%  Similarity=0.129  Sum_probs=60.0

Q ss_pred             hhhHhhhcCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHHHHHcCCeEE
Q 026548           92 AVTSAYYRGALGAVVVYDITKRQS-FDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEFAEDQGLFFS  168 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~  168 (237)
                      .+.+..+.++|.+++|+|+.++.. ...+.+++.....   .++|.+||+||+|+......  ..+...++....|.+++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            344456889999999999997643 3344444433322   47899999999999763210  12333444455688999


Q ss_pred             EEcCCCCCCHHHHHH
Q 026548          169 EASALNGDNVDTAFF  183 (237)
Q Consensus       169 ~~Sa~~~~gi~~~~~  183 (237)
                      .+||.++.|+++++.
T Consensus       155 ~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          155 LTSSKDQDSLADIIP  169 (307)
T ss_dssp             ECCHHHHTTCTTTGG
T ss_pred             EEecCCCCCHHHHHh
Confidence            999998888776554

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.98  E-value=2e-05  Score=70.53  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=21.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFF   54 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~   54 (237)
                      ..|+|+|+.|||||||++.+.+...+
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCCC
Confidence            45999999999999999999987533

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.77  E-value=5e-05  Score=63.29  Aligned_cols=84  Identities=15%  Similarity=0.165  Sum_probs=55.3

Q ss_pred             hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC-CHHHHHHHHHHcCCeEEEEcCCC
Q 026548           97 YYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV-SAEDAVEFAEDQGLFFSEASALN  174 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~  174 (237)
                      .+.++|.+++|.+. .+. +...+.+++-....   .++|.+||+||+|+...... ..+.........|++++.+|+.+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46889999988665 444 33444444443333   36888999999999753210 01122333446788999999999


Q ss_pred             CCCHHHHHHH
Q 026548          175 GDNVDTAFFR  184 (237)
Q Consensus       175 ~~gi~~~~~~  184 (237)
                      +.|++++...
T Consensus       203 ~~gl~~L~~~  212 (358)
T 2rcn_A          203 QDGLKPLEEA  212 (358)
T ss_dssp             TBTHHHHHHH
T ss_pred             CcCHHHHHHh
Confidence            9999987654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.71  E-value=2.8e-05  Score=64.21  Aligned_cols=90  Identities=13%  Similarity=0.001  Sum_probs=53.4

Q ss_pred             EEEEeCCCcchhchhh-Hh-----hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC
Q 026548           79 AQIWDTAGQERYRAVT-SA-----YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS  152 (237)
Q Consensus        79 ~~l~Dt~G~~~~~~~~-~~-----~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~  152 (237)
                      +.++|++|........ ..     ..-..|..++++|.....   ++......+....   -..+|++||.|...    .
T Consensus       214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a----~  283 (328)
T 3e70_C          214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA----R  283 (328)
T ss_dssp             EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----C
T ss_pred             hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----c
Confidence            5589999964322211 11     112468889999976543   2223333333322   23478899998532    2


Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          153 AEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                      ...+..+....+.|+..++  +|.++++
T Consensus       284 ~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          284 GGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            3346677888899988887  6766654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.63  E-value=4.3e-05  Score=65.54  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=22.6

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .+..-|.|+|++++|||||+|.|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            45677999999999999999999863

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.62  E-value=2.6e-06  Score=73.88  Aligned_cols=109  Identities=16%  Similarity=0.158  Sum_probs=61.7

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch--hchhh--------Hh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER--YRAVT--------SA   96 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~--------~~   96 (237)
                      ....|+++|.+||||||+.++|....... ..++..+..........+......+||..|.+.  ....+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999987543211 111111000000000011112235789888632  23332        45


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q 026548           97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIG  140 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~  140 (237)
                      ++...++.++|+|.++. +......|+..+...   +.+++++-
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~  156 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE  156 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence            56667888999999987 455556676666553   34454444

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.27  E-value=0.0004  Score=59.45  Aligned_cols=82  Identities=13%  Similarity=0.045  Sum_probs=46.2

Q ss_pred             EEEEEEeCCCcchhch-hhH-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCc
Q 026548           77 IKAQIWDTAGQERYRA-VTS-----AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMR  149 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~  149 (237)
                      +.+.|+||||...... +..     ..+...|.+++|+|+......-   .....+..    .++ .-||+||.|.....
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~----~l~i~gvVlnK~D~~~~~  256 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE----ALPLTGVVLTKVDGDARG  256 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc----cCCCeEEEEecCCCCccH
Confidence            4578999999654322 111     1244788999999987543221   22222322    234 34789999974321


Q ss_pred             CCCHHHHHHHHHHcCCeEEE
Q 026548          150 AVSAEDAVEFAEDQGLFFSE  169 (237)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~  169 (237)
                          ..+..+....+.|+..
T Consensus       257 ----g~~l~i~~~~~~Pi~~  272 (433)
T 2xxa_A          257 ----GAALSIRHITGKPIKF  272 (433)
T ss_dssp             ----THHHHHHHHHCCCEEE
T ss_pred             ----HHHHHHHHHHCCCeEE
Confidence                2344556666766443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.16  E-value=0.00021  Score=53.63  Aligned_cols=23  Identities=22%  Similarity=0.637  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      +++++|++|||||||++.+.+.-
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999887643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.07  E-value=0.00027  Score=58.86  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      .++|+|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999998654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.06  E-value=0.00082  Score=54.75  Aligned_cols=22  Identities=55%  Similarity=0.751  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++++|++|+|||||+|.|. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            58999999999999999998 54

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.04  E-value=0.00019  Score=58.58  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -.++|+|++|+|||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            378999999999999999998764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.03  E-value=0.0003  Score=52.67  Aligned_cols=22  Identities=23%  Similarity=0.533  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.97  E-value=0.00036  Score=53.18  Aligned_cols=22  Identities=36%  Similarity=0.587  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .++|+|++|||||||++.|.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999998763

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.93  E-value=0.00046  Score=51.88  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .|+|+|++|||||||++.|.+.
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999875

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.89  E-value=0.00046  Score=52.43  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -|+|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4899999999999999999865

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.86  E-value=0.00052  Score=50.96  Aligned_cols=20  Identities=40%  Similarity=0.527  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHh
Q 026548           30 KVVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~   49 (237)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            48999999999999999754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.86  E-value=0.00073  Score=51.48  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -|+|+|++|+|||||++.|...
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.81  E-value=0.00058  Score=52.29  Aligned_cols=23  Identities=39%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++|+|+.|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999987654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.78  E-value=0.00064  Score=52.73  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++|+|+.|||||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999998754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.75  E-value=0.00066  Score=52.50  Aligned_cols=24  Identities=25%  Similarity=0.567  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -.++|+|+.|||||||++.|.+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358999999999999999988743

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.72  E-value=0.00078  Score=49.46  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++++|+.|||||||++.+.+.-
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999988755

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.71  E-value=0.0008  Score=51.58  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -|+|+|++|||||||++.|....
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            58999999999999999998654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.68  E-value=0.00084  Score=51.39  Aligned_cols=26  Identities=19%  Similarity=0.141  Sum_probs=22.1

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      ....|+|+|++|||||||++.|.+.-
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999887643

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.68  E-value=0.0075  Score=51.38  Aligned_cols=85  Identities=16%  Similarity=0.027  Sum_probs=48.3

Q ss_pred             EEEEEEeCCCcchhch-hhH-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           77 IKAQIWDTAGQERYRA-VTS-----AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      +.+.|+||||...... +..     ...-..|.+++|+|+....   +.......+....   ....||+||.|...   
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~l---~i~GVIlTKlD~~~---  251 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKV---GVTGLVLTKLDGDA---  251 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHT---CCCEEEEESGGGCS---
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhcC---CceEEEEeCcCCcc---
Confidence            4577999999543321 111     1123688899999986432   2222223333221   12467899998642   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 026548          151 VSAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~S  171 (237)
                       ....+..+....+.|+.++.
T Consensus       252 -~~g~alsi~~~~g~PI~flg  271 (425)
T 2ffh_A          252 -RGGAALSARHVTGKPIYFAG  271 (425)
T ss_dssp             -SCHHHHHHHHHHCCCEEEEE
T ss_pred             -cHHHHHHHHHHHCCCEEEEe
Confidence             12245566777888876665

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.66  E-value=0.00092  Score=52.39  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            58999999999999999988765

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.66  E-value=0.001  Score=50.23  Aligned_cols=21  Identities=33%  Similarity=0.608  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |+|+||+||||+||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999754

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.63  E-value=0.001  Score=48.81  Aligned_cols=19  Identities=21%  Similarity=0.398  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCcHHHHHHHH
Q 026548           30 KVVVIGDSAVGKSQILSRF   48 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l   48 (237)
                      -|+|.|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.63  E-value=0.00097  Score=49.18  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .|+|+|++||||||+.+.|.+.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.62  E-value=0.00045  Score=54.38  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=21.0

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ...+|+|+|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998863

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.61  E-value=0.0011  Score=51.65  Aligned_cols=23  Identities=35%  Similarity=0.395  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++++|+.|||||||++.+.+..
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.61  E-value=0.00098  Score=50.60  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -.|+|+|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999987654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.60  E-value=0.001  Score=50.00  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -++|+|++|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.60  E-value=0.0011  Score=50.44  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999998753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.57  E-value=0.0013  Score=48.77  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3589999999999999999986

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.56  E-value=0.0012  Score=48.54  Aligned_cols=22  Identities=18%  Similarity=0.359  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998643

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.56  E-value=0.0013  Score=51.79  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++++|+.|||||||++.+.+..
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.56  E-value=0.0012  Score=50.36  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...|+|+|+.|||||||++.|.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999988764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.54  E-value=0.0012  Score=50.22  Aligned_cols=22  Identities=36%  Similarity=0.450  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -.|+|+|++|||||||++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.54  E-value=0.0014  Score=51.46  Aligned_cols=21  Identities=24%  Similarity=0.607  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHh
Q 026548           29 FKVVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~   49 (237)
                      -.|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999988

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.54  E-value=0.0013  Score=50.77  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.51  E-value=0.0013  Score=52.72  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++|+|+.|||||||++.+.+..
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.50  E-value=0.0014  Score=52.28  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++|+|+.|||||||++.+.+..
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.50  E-value=0.0014  Score=51.47  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999988764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.48  E-value=0.0014  Score=49.66  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999988764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.48  E-value=0.0015  Score=52.24  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.46  E-value=0.0015  Score=51.94  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998765

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.45  E-value=0.0016  Score=50.84  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999988764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.45  E-value=0.0012  Score=49.15  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .-.++++|++|+|||||++.+.+.-
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999887643

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.44  E-value=0.0016  Score=51.94  Aligned_cols=23  Identities=48%  Similarity=0.518  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999988764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.44  E-value=0.0017  Score=51.06  Aligned_cols=23  Identities=30%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999988764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.43  E-value=0.0016  Score=51.43  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999988764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.43  E-value=0.0017  Score=49.79  Aligned_cols=21  Identities=19%  Similarity=0.408  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998853

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.43  E-value=0.0016  Score=51.16  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999988764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.42  E-value=0.0017  Score=51.62  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999998764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.41  E-value=0.0018  Score=49.70  Aligned_cols=21  Identities=24%  Similarity=0.397  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998853

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.40  E-value=0.0017  Score=51.30  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999988764

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.40  E-value=0.0021  Score=47.47  Aligned_cols=22  Identities=32%  Similarity=0.416  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -.|+|+|++||||||+.+.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.40  E-value=0.0018  Score=51.22  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .++|+|+.|||||||++.+.+.
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999986

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.39  E-value=0.0016  Score=49.41  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..|+|+|.+||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999988643

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.38  E-value=0.0018  Score=47.89  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .|+|.|.+||||||+.+.|...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998753

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.38  E-value=0.0016  Score=51.84  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .++|+|+.|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            6999999999999999998763

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.38  E-value=0.0017  Score=52.95  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6899999999999999988754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.37  E-value=0.0022  Score=47.65  Aligned_cols=23  Identities=17%  Similarity=0.417  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ...|++.|.+||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34799999999999999998863

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.36  E-value=0.0019  Score=51.56  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .++|+|+.|||||||++.+.+.
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999986

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.36  E-value=0.0019  Score=51.45  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999998753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.35  E-value=0.0069  Score=43.33  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            46999999999999999887654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.35  E-value=0.0022  Score=52.16  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      .++++|++|+|||||+|.|.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999987654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.34  E-value=0.0019  Score=49.06  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +|+|+|++||||||+.+.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            699999999999999999876

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.34  E-value=0.0019  Score=51.93  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58899999999999999988764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.34  E-value=0.0019  Score=51.70  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.33  E-value=0.0022  Score=48.57  Aligned_cols=22  Identities=18%  Similarity=0.451  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -.|+|+|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.33  E-value=0.0025  Score=48.50  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +.|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999976

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.33  E-value=0.0021  Score=48.02  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .|+|.|.+||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.32  E-value=0.002  Score=51.06  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.32  E-value=0.0013  Score=51.21  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=15.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHh-cC
Q 026548           29 FKVVVIGDSAVGKSQILSRFT-KN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~-~~   51 (237)
                      --|+|+|++|||||||++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            358999999999999999998 54

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.30  E-value=0.0031  Score=48.74  Aligned_cols=21  Identities=19%  Similarity=0.438  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -|+|+|+|||||+|....|..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999988764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.30  E-value=0.0021  Score=51.34  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58899999999999999988764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.30  E-value=0.0026  Score=47.62  Aligned_cols=24  Identities=13%  Similarity=0.374  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...|+|+|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999988754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.29  E-value=0.0013  Score=50.48  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .++|+|+.|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999876

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.28  E-value=0.0032  Score=47.93  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=21.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...|+|+|++|||||||++.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999998764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.28  E-value=0.0021  Score=47.89  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-++|+|++|+|||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            36899999999999999999864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.28  E-value=0.0028  Score=47.22  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|+|.+||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998863

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.28  E-value=0.0022  Score=49.46  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|+|++||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.27  E-value=0.0021  Score=48.81  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .--|+|+|++||||||+.+.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999988654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.26  E-value=0.0025  Score=48.15  Aligned_cols=21  Identities=33%  Similarity=0.601  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999998865

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.25  E-value=0.0024  Score=47.71  Aligned_cols=22  Identities=27%  Similarity=0.191  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.25  E-value=0.002  Score=49.62  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -++|+|++|||||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.22  E-value=0.0039  Score=47.23  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=20.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ....|+|.|.+||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998863

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.22  E-value=0.0029  Score=47.35  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.21  E-value=0.0027  Score=50.61  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999988764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.21  E-value=0.0028  Score=48.60  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .|+|+|+|||||+|....|..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988753

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.20  E-value=0.0028  Score=47.26  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998854

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.18  E-value=0.0029  Score=49.86  Aligned_cols=26  Identities=27%  Similarity=0.349  Sum_probs=21.1

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ....+.|+|.|++||||||+.+.|..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            33457899999999999999998855

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.17  E-value=0.003  Score=48.64  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|+|.+||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.16  E-value=0.0033  Score=51.40  Aligned_cols=27  Identities=30%  Similarity=0.241  Sum_probs=22.6

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      ....-|+|+|++|||||||++.|.+.-
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            345679999999999999999887643

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.16  E-value=0.0028  Score=46.86  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.16  E-value=0.0033  Score=47.05  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.16  E-value=0.0029  Score=48.48  Aligned_cols=21  Identities=14%  Similarity=0.415  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.15  E-value=0.0035  Score=47.47  Aligned_cols=23  Identities=17%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ...|+|.|.+||||||+.+.|..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.12  E-value=0.0026  Score=50.96  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999998764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.12  E-value=0.0035  Score=47.61  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.12  E-value=0.0026  Score=53.14  Aligned_cols=32  Identities=22%  Similarity=0.389  Sum_probs=25.3

Q ss_pred             CCCCCce--eeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           21 IPDKIDY--VFKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        21 ~~~~~~~--~~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .+.....  .-+++|+|++|||||||++.|.+..
T Consensus       161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3444444  5689999999999999999988753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.11  E-value=0.0016  Score=48.50  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .|+|+|++|||||||++.|.+.-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999987654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.10  E-value=0.0023  Score=52.19  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.|.+-.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            58999999999999999887654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.10  E-value=0.0017  Score=47.03  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -.++++|++|+|||+|++.+.+.-
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            368899999999999999987644

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.07  E-value=0.0029  Score=49.68  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ...-|+|+|+.|||||||++.|.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998876

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.07  E-value=0.014  Score=50.00  Aligned_cols=64  Identities=25%  Similarity=0.351  Sum_probs=38.6

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhc------------------CCCcCC---CCCCcceeEEEEEEEE---CCEEEEEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTK------------------NEFFFD---SKSTIGVEFQTRTVTI---NGKIIKAQ   80 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~------------------~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~   80 (237)
                      ..+..=|.|+|+.++|||+|+|.|+.                  ..|...   ...|.|+-.-...+.+   ++..+.+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            34567788999999999999995541                  122211   1123333222112222   56667899


Q ss_pred             EEeCCCcc
Q 026548           81 IWDTAGQE   88 (237)
Q Consensus        81 l~Dt~G~~   88 (237)
                      |+||.|..
T Consensus       144 llDTEG~~  151 (457)
T 4ido_A          144 LMDTQGTF  151 (457)
T ss_dssp             EEEECCBT
T ss_pred             EEeccCCC
Confidence            99999943

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.06  E-value=0.0046  Score=47.01  Aligned_cols=22  Identities=23%  Similarity=0.122  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.05  E-value=0.0031  Score=50.96  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+..
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999988764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.04  E-value=0.0032  Score=52.39  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      -++|+|+.|||||||++.+.+...
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            478999999999999999988653

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.04  E-value=0.0031  Score=49.62  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999998864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.03  E-value=0.0036  Score=48.46  Aligned_cols=21  Identities=33%  Similarity=0.661  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHh
Q 026548           29 FKVVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~   49 (237)
                      ..|+|.|.+||||||+.+.|.
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999885

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.03  E-value=0.0039  Score=50.30  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..-|+|.|++||||||+.+.|..
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.01  E-value=0.0034  Score=48.35  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998853

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.01  E-value=0.0041  Score=45.50  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998865

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.00  E-value=0.0031  Score=52.52  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .|+|+|+.|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6999999999999999998753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.99  E-value=0.005  Score=45.91  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998854

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.99  E-value=0.0043  Score=45.89  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -.++|.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.98  E-value=0.0038  Score=51.96  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++|+|+.|||||||++.+.+..
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998765

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.97  E-value=0.0039  Score=52.02  Aligned_cols=23  Identities=35%  Similarity=0.354  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++|+|+.|||||||++.+.+..
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            47899999999999999998765

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.96  E-value=0.0043  Score=46.88  Aligned_cols=23  Identities=17%  Similarity=0.154  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..|+|.|.+||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            46999999999999999998764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.95  E-value=0.0047  Score=46.58  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=21.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...|+|.|.+||||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            457999999999999999998765

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.95  E-value=0.0042  Score=48.01  Aligned_cols=21  Identities=14%  Similarity=0.309  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.94  E-value=0.004  Score=51.89  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++++|+.|||||||++.+.+..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            47899999999999999998764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.93  E-value=0.0037  Score=51.54  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.|.+.-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999988754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.93  E-value=0.0041  Score=46.64  Aligned_cols=22  Identities=18%  Similarity=0.354  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998853

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.93  E-value=0.0042  Score=51.85  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++++|+.|||||||++.+.+..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999998765

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.91  E-value=0.0042  Score=52.11  Aligned_cols=23  Identities=39%  Similarity=0.484  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++|+|+.|||||||++.+.+..
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            47899999999999999998765

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.90  E-value=0.0039  Score=51.99  Aligned_cols=24  Identities=21%  Similarity=0.445  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -.++|+|+.|||||||++.|.+.-
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            379999999999999999998754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.90  E-value=0.0051  Score=50.44  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=21.8

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ....+-|+|.|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34467799999999999999998754

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.88  E-value=0.0038  Score=50.88  Aligned_cols=25  Identities=24%  Similarity=0.313  Sum_probs=21.5

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...-|+|+|++|||||||++.|.+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.88  E-value=0.0052  Score=46.63  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=20.8

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ...-|+|+|++|||||||++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.87  E-value=0.002  Score=49.15  Aligned_cols=21  Identities=14%  Similarity=0.411  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999998864

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.87  E-value=0.019  Score=47.20  Aligned_cols=21  Identities=14%  Similarity=0.295  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +++++|++|+||||+++.+.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999998876

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.87  E-value=0.0044  Score=51.90  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++|+|+.|||||||++.+.+..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            47899999999999999998765

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.86  E-value=0.0059  Score=49.36  Aligned_cols=25  Identities=16%  Similarity=0.139  Sum_probs=21.1

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .....|+|+|++|||||||++.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999987754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.86  E-value=0.0046  Score=51.76  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++++|+.|||||||++.+.+..
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999998764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.85  E-value=0.0052  Score=45.53  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..++|+|.+|||||||+.+|...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999998753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.84  E-value=0.0047  Score=46.17  Aligned_cols=21  Identities=14%  Similarity=0.218  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.83  E-value=0.0049  Score=47.37  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.83  E-value=0.005  Score=46.26  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.82  E-value=0.005  Score=45.18  Aligned_cols=21  Identities=10%  Similarity=0.395  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.81  E-value=0.0042  Score=51.18  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            36899999999999999998764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.80  E-value=0.0051  Score=46.82  Aligned_cols=23  Identities=22%  Similarity=0.224  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.79  E-value=0.0043  Score=52.02  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .|+|+|++|||||||++.|.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6999999999999999998763

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.79  E-value=0.0046  Score=49.43  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .|+++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3999999999999999998864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.79  E-value=0.005  Score=48.67  Aligned_cols=21  Identities=14%  Similarity=0.371  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998853

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.78  E-value=0.005  Score=45.82  Aligned_cols=21  Identities=43%  Similarity=0.572  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.78  E-value=0.0038  Score=51.81  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++++|+.|||||||++.+.+..
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999998765

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.77  E-value=0.0077  Score=44.93  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...|+|+|.+||||||+.+.|...
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            356999999999999999988653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.76  E-value=0.0046  Score=50.31  Aligned_cols=89  Identities=15%  Similarity=0.038  Sum_probs=48.9

Q ss_pred             EEEEeCCCcchhch------------hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548           79 AQIWDTAGQERYRA------------VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV  146 (237)
Q Consensus        79 ~~l~Dt~G~~~~~~------------~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~  146 (237)
                      +.+.||+|......            ....+....+.+++++|.......-.   .+..+....  + ..+|++||.|..
T Consensus       187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~---~~~~~~~~~--~-~t~iivTh~d~~  260 (304)
T 1rj9_A          187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLE---QAKKFHEAV--G-LTGVIVTKLDGT  260 (304)
T ss_dssp             EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHH---HHHHHHHHH--C-CSEEEEECTTSS
T ss_pred             EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHH---HHHHHHHHc--C-CcEEEEECCccc
Confidence            55889999532211            01122345677888999876433222   223332221  1 247889999864


Q ss_pred             CCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      ..    ...+..+....+.|+..+.  .|+.++
T Consensus       261 a~----gg~~l~i~~~~~~pi~~ig--~Ge~~~  287 (304)
T 1rj9_A          261 AK----GGVLIPIVRTLKVPIKFVG--VGEGPD  287 (304)
T ss_dssp             CC----CTTHHHHHHHHCCCEEEEE--CSSSTT
T ss_pred             cc----ccHHHHHHHHHCCCeEEEe--CCCChh
Confidence            32    1235566677888877775  444433

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.73  E-value=0.0054  Score=48.64  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999998875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.73  E-value=0.0058  Score=45.37  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -.+|+|+.|+|||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999854

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.72  E-value=0.0051  Score=50.04  Aligned_cols=82  Identities=17%  Similarity=0.091  Sum_probs=45.0

Q ss_pred             EEEEeCCCcchhchhh------------HhhhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548           79 AQIWDTAGQERYRAVT------------SAYYRGALGAVVVYDITKR-QSFDHVARWVEELRAHADSSIRIILIGNKSDL  145 (237)
Q Consensus        79 ~~l~Dt~G~~~~~~~~------------~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~  145 (237)
                      ..++|+.|........            ..+....+-+++++|.+.. +....+    ..+...  .++ .+|++||.|.
T Consensus       186 ~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~----~~~~~~--~g~-t~iiiThlD~  258 (302)
T 3b9q_A          186 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA----REFNEV--VGI-TGLILTKLDG  258 (302)
T ss_dssp             EEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHH----HHHHHH--TCC-CEEEEECCSS
T ss_pred             chHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHH----HHHHHh--cCC-CEEEEeCCCC
Confidence            4588999854322111            1122456667888896543 222222    223222  122 4677889875


Q ss_pred             CCCcCCCHHHHHHHHHHcCCeEEEEc
Q 026548          146 VDMRAVSAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~S  171 (237)
                      ..    ....+..++...+.++..+.
T Consensus       259 ~~----~~g~~l~~~~~~~~pi~~i~  280 (302)
T 3b9q_A          259 SA----RGGCVVSVVEELGIPVKFIG  280 (302)
T ss_dssp             CS----CTHHHHHHHHHHCCCEEEEE
T ss_pred             CC----ccChheehHHHHCCCEEEEe
Confidence            32    34466777888888876664

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.71  E-value=0.0064  Score=47.25  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ...|+|+|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998854

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.70  E-value=0.0049  Score=52.47  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -|+|+|+.|||||||++.+.+.-
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            58999999999999999987643

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.70  E-value=0.0042  Score=49.02  Aligned_cols=24  Identities=25%  Similarity=0.283  Sum_probs=20.9

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ....|+++|++||||||+.+.|..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.68  E-value=0.0054  Score=47.15  Aligned_cols=22  Identities=18%  Similarity=0.379  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -++|+|++|+|||||++.+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999998754

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.67  E-value=0.0063  Score=48.01  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHh
Q 026548           29 FKVVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~   49 (237)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999887

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.66  E-value=0.0054  Score=53.57  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|++|||||||++.|.+.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            59999999999999999998644

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.65  E-value=0.0045  Score=48.07  Aligned_cols=25  Identities=32%  Similarity=0.541  Sum_probs=21.7

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...-|+|.|+.|||||||++.|.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3457999999999999999998765

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.64  E-value=0.0065  Score=45.05  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..|+|.|.+||||||+.+.|...
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.64  E-value=0.0059  Score=51.44  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+-.
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.64  E-value=0.0072  Score=44.26  Aligned_cols=21  Identities=29%  Similarity=0.398  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .|+|.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998754

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.63  E-value=0.0092  Score=47.90  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.2

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHh
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~   49 (237)
                      .....|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999886

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.61  E-value=0.0052  Score=45.31  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.++|.|++|+|||+|++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.61  E-value=0.0041  Score=46.11  Aligned_cols=22  Identities=18%  Similarity=0.231  Sum_probs=15.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999863

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.59  E-value=0.0066  Score=47.82  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..|+++|++|+|||+|++.+.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999998753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.58  E-value=0.0038  Score=51.96  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++++|+.|||||||++.+.+..
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998765

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.57  E-value=0.0081  Score=46.04  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.55  E-value=0.0077  Score=46.44  Aligned_cols=24  Identities=13%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.++|.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988653

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.54  E-value=0.0071  Score=45.68  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      ..+++.|++|+|||+|++.+...-
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999887543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.44  E-value=0.0092  Score=43.11  Aligned_cols=19  Identities=32%  Similarity=0.583  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 026548           31 VVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~   49 (237)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5789999999999999875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.42  E-value=0.007  Score=48.78  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++|+|++|+|||||+..+.+.-
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            48899999999999999887654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.42  E-value=0.006  Score=46.62  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999888764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.41  E-value=0.049  Score=45.37  Aligned_cols=19  Identities=32%  Similarity=0.538  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 026548           31 VVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~   49 (237)
                      .+|+|+.|||||||+++++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5589999999999999976

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.40  E-value=0.0068  Score=52.24  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -.++|+|+.|||||||++.|.+.
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            37999999999999999998764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.39  E-value=0.0093  Score=46.56  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .+.|+|.|++||||||+.+.|..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998863

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.017  Score=44.76  Aligned_cols=28  Identities=14%  Similarity=-0.013  Sum_probs=22.7

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      ..+.+-|++-|+++.||++|++++.+..
T Consensus        26 P~nkilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           26 PQNKILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             CCCceEEEecCcccccHHHHHHHHhccc
Confidence            4455666666999999999999999874

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.37  E-value=0.0087  Score=45.69  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|+|.+||||||+.+.|..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.35  E-value=0.0094  Score=46.34  Aligned_cols=25  Identities=12%  Similarity=0.227  Sum_probs=21.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...-|+|.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998754

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.35  E-value=0.0083  Score=46.50  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999998874

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.35  E-value=0.0083  Score=45.74  Aligned_cols=21  Identities=24%  Similarity=0.183  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999987

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.35  E-value=0.029  Score=42.17  Aligned_cols=85  Identities=14%  Similarity=-0.021  Sum_probs=55.2

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcCCCHH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA--DSSIRIILIGNKSDLVDMRAVSAE  154 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~  154 (237)
                      +.+.|+|+|+..  .......+..+|.+|+++..+...  ..+...++.+....  ..+.++.+|+|+.|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            467899999865  334455677799999999876543  55666666665543  245678999999985321   123


Q ss_pred             HHHHHHHHcCCeEE
Q 026548          155 DAVEFAEDQGLFFS  168 (237)
Q Consensus       155 ~~~~~~~~~~~~~~  168 (237)
                      +..++.+..+.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            45555555665544

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.34  E-value=0.0081  Score=50.02  Aligned_cols=82  Identities=16%  Similarity=0.071  Sum_probs=45.6

Q ss_pred             EEEEeCCCcchhchh------------hHhhhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548           79 AQIWDTAGQERYRAV------------TSAYYRGALGAVVVYDITKR-QSFDHVARWVEELRAHADSSIRIILIGNKSDL  145 (237)
Q Consensus        79 ~~l~Dt~G~~~~~~~------------~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~  145 (237)
                      ..++|+.|.......            ...+....+-+++++|.+.. +....+    ..+....  + ..+|++||.|.
T Consensus       243 ~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~----~~~~~~~--g-~t~iiiThlD~  315 (359)
T 2og2_A          243 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA----REFNEVV--G-ITGLILTKLDG  315 (359)
T ss_dssp             EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHH----HHHHHHT--C-CCEEEEESCTT
T ss_pred             HHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHH----HHHHHhc--C-CeEEEEecCcc
Confidence            458899985432211            11223456777888896543 222222    2232221  2 24677899875


Q ss_pred             CCCcCCCHHHHHHHHHHcCCeEEEEc
Q 026548          146 VDMRAVSAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~S  171 (237)
                      ..    ....+..++...+.|+..+.
T Consensus       316 ~~----~gG~~lsi~~~~~~pI~~ig  337 (359)
T 2og2_A          316 SA----RGGCVVSVVEELGIPVKFIG  337 (359)
T ss_dssp             CS----CTHHHHHHHHHHCCCEEEEE
T ss_pred             cc----cccHHHHHHHHhCCCEEEEe
Confidence            32    24456677778888877765

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.32  E-value=0.0086  Score=49.67  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      +++++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999998875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.32  E-value=0.009  Score=47.17  Aligned_cols=22  Identities=14%  Similarity=0.253  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -.|+|+|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998854

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.29  E-value=0.01  Score=42.44  Aligned_cols=25  Identities=12%  Similarity=0.086  Sum_probs=21.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      ...|++.|++|+|||++.+.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3569999999999999999987643

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.24  E-value=0.0098  Score=47.93  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.24  E-value=0.0089  Score=51.80  Aligned_cols=91  Identities=13%  Similarity=0.102  Sum_probs=50.4

Q ss_pred             EEEEEeCCCcchhch-h------hHhhh-----cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548           78 KAQIWDTAGQERYRA-V------TSAYY-----RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL  145 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~-~------~~~~~-----~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~  145 (237)
                      .+.|+||+|...... +      +....     ...+-++|++|++.....-   .....+....  + ...||+||.|.
T Consensus       377 DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al---~~ak~f~~~~--~-itgvIlTKLD~  450 (503)
T 2yhs_A          377 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV---SQAKLFHEAV--G-LTGITLTKLDG  450 (503)
T ss_dssp             SEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH---HHHHHHHHHT--C-CSEEEEECGGG
T ss_pred             CEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH---HHHHHHHhhc--C-CCEEEEEcCCC
Confidence            467999999532211 1      11111     1246788999976543211   2223333321  2 23578999985


Q ss_pred             CCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                      ..    ....+..++..++.++.++.  +|.++++
T Consensus       451 ta----kgG~~lsi~~~~~~PI~fig--~Ge~vdD  479 (503)
T 2yhs_A          451 TA----KGGVIFSVADQFGIPIRYIG--VGERIED  479 (503)
T ss_dssp             CS----CCTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cc----cccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence            32    22356677778888877765  5555544

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.22  E-value=0.0091  Score=50.08  Aligned_cols=22  Identities=14%  Similarity=0.154  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999885

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.18  E-value=0.0068  Score=49.62  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      --++|+|..|||||||++.|.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            357899999999999999998653

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.15  E-value=0.014  Score=47.13  Aligned_cols=24  Identities=17%  Similarity=0.129  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...+++.|+||+|||+|++++...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456788899999999999988754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.12  E-value=0.011  Score=47.53  Aligned_cols=24  Identities=13%  Similarity=0.264  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.|++.|++|+|||+|++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357999999999999999998763

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.09  E-value=0.012  Score=46.93  Aligned_cols=24  Identities=13%  Similarity=0.267  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999998654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.08  E-value=0.013  Score=51.64  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      =.++|+|+.|||||||++.|.+..
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.07  E-value=0.014  Score=45.84  Aligned_cols=23  Identities=13%  Similarity=0.273  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ...|++.|++|+|||+|++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999999875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.07  E-value=0.016  Score=43.83  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=21.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      +...|+|.|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            3567999999999999999988654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.06  E-value=0.013  Score=44.94  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.04  E-value=0.016  Score=46.73  Aligned_cols=24  Identities=13%  Similarity=0.338  Sum_probs=20.1

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ....+++.|++|+|||++++.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            355799999999999999986654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.04  E-value=0.013  Score=44.28  Aligned_cols=22  Identities=14%  Similarity=0.360  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .+++.|++|+|||+|++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.01  E-value=0.012  Score=51.69  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++|+|+.|||||||++.|.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=94.96  E-value=0.012  Score=47.66  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -.|++.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            46999999999999999998754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.96  E-value=0.016  Score=45.11  Aligned_cols=23  Identities=13%  Similarity=0.381  Sum_probs=19.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..+++|+|+|||||||+.+.|..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHH
Confidence            45899999999999999988754

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.96  E-value=0.012  Score=50.92  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -++|+|+.|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999998865

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=94.90  E-value=0.014  Score=51.87  Aligned_cols=23  Identities=39%  Similarity=0.460  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++++|+.|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999988754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.90  E-value=0.048  Score=44.57  Aligned_cols=23  Identities=13%  Similarity=0.310  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..|+|.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999998644

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=94.89  E-value=0.013  Score=47.88  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.+++.|++|+|||+|++.+...
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999988754

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.86  E-value=0.014  Score=50.03  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      +++|+|+.|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            78999999999999999988764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.83  E-value=0.019  Score=51.19  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      .++|+|+.|+|||||++.|.+...
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            589999999999999999987643

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=94.81  E-value=0.018  Score=44.78  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ....|+|+|.+||||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.80  E-value=0.016  Score=51.51  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++++|+.|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999988764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.79  E-value=0.014  Score=46.60  Aligned_cols=21  Identities=14%  Similarity=0.238  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999998875

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.78  E-value=0.024  Score=44.95  Aligned_cols=26  Identities=15%  Similarity=0.359  Sum_probs=22.2

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .....+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34568999999999999999998764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.69  E-value=0.018  Score=43.48  Aligned_cols=21  Identities=38%  Similarity=0.461  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.67  E-value=0.018  Score=51.42  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|+|||||++.|.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            68999999999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.62  E-value=0.018  Score=50.67  Aligned_cols=24  Identities=13%  Similarity=0.271  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      .++|+|+.|||||||++.|.+...
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999987653

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.59  E-value=0.016  Score=47.60  Aligned_cols=22  Identities=14%  Similarity=0.436  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ++++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.59  E-value=0.019  Score=51.29  Aligned_cols=24  Identities=17%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      .++|+|+.|+|||||++.|.+...
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999988653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.59  E-value=0.02  Score=50.33  Aligned_cols=24  Identities=17%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      .++|+|+.|||||||++.|.+...
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999998653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.58  E-value=0.017  Score=47.88  Aligned_cols=24  Identities=13%  Similarity=0.261  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.++|.|++|+|||||++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999998754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.58  E-value=0.027  Score=47.79  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..-|+|+|.+||||||+.++|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            456889999999999999998753

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.58  E-value=0.017  Score=49.17  Aligned_cols=24  Identities=17%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.|++.|+||+|||+|++++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999998753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.57  E-value=0.02  Score=44.40  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.56  E-value=0.02  Score=46.06  Aligned_cols=23  Identities=35%  Similarity=0.615  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..+++.|++|+|||++++.+...
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988653

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.54  E-value=0.02  Score=48.87  Aligned_cols=24  Identities=13%  Similarity=0.196  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.|++.||||+|||.|++++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999998754

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.48  E-value=0.023  Score=43.23  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHh
Q 026548           30 KVVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~   49 (237)
                      -.+|+|+.|+|||||+.++.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            35788999999999999874

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=94.47  E-value=0.28  Score=37.17  Aligned_cols=85  Identities=15%  Similarity=0.080  Sum_probs=55.2

Q ss_pred             EEEEEEeCCCc-chhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHH
Q 026548           77 IKAQIWDTAGQ-ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAED  155 (237)
Q Consensus        77 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~  155 (237)
                      +.+.++|+|+. ...  .....+..+|.+|+++..+ ..+...+...++.+....  +.++.+|+|+.|....  ....+
T Consensus        68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~  140 (209)
T 3cwq_A           68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE  140 (209)
T ss_dssp             CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred             CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence            45779999876 332  3445677899999888764 555666666666666533  4668899999985420  12345


Q ss_pred             HHHHHHHcCCeEE
Q 026548          156 AVEFAEDQGLFFS  168 (237)
Q Consensus       156 ~~~~~~~~~~~~~  168 (237)
                      ..+..+..+.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            5555666665544

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.46  E-value=0.02  Score=47.53  Aligned_cols=23  Identities=17%  Similarity=0.354  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|.|++|+|||||++.+....
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            69999999999999999987543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.46  E-value=0.027  Score=45.36  Aligned_cols=23  Identities=17%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -.++++|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999988654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.45  E-value=0.022  Score=43.30  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      ..|+|+|++|+|||+|...|...-
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998664

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.44  E-value=0.022  Score=46.64  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.|++.|++|+|||+|++++...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            357999999999999999998754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.44  E-value=0.022  Score=46.54  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...|++.|++|+|||+|++++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999998654

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.38  E-value=0.014  Score=51.86  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++++|+.|||||||++.+.+-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            68999999999999998777654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.38  E-value=0.016  Score=51.71  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++++|+.|||||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68999999999999999887654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.37  E-value=0.02  Score=46.33  Aligned_cols=85  Identities=12%  Similarity=0.097  Sum_probs=49.1

Q ss_pred             EEEEEEeCCCcchhchh-h---Hhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           77 IKAQIWDTAGQERYRAV-T---SAYYR--GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~-~---~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      +.+.|+||+|....... .   ...+.  ..+.+++|+|++..  ...+..+...+..   .+ ..-+|+||.|....  
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~--  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTS--  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSC--
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccc--
Confidence            45789999996654321 1   12232  36778999987643  2334333333221   12 23466799996532  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 026548          151 VSAEDAVEFAEDQGLFFSEAS  171 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~S  171 (237)
                        ...+...+...++|+..++
T Consensus       255 --~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 --LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CHHHHHHHHTCSCCCSEEC
T ss_pred             --hhHHHHHHHHHCcCEEEEE
Confidence              2356677778888866654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.29  E-value=0.025  Score=48.36  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.|++.|+||+|||+|++++.+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.28  E-value=0.024  Score=50.56  Aligned_cols=23  Identities=17%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 026548           31 VVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      ++|+|+.|+|||||++.|.+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            79999999999999999988654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.28  E-value=0.021  Score=47.33  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -+.|+|++|+|||||+..+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998865

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.25  E-value=0.018  Score=51.21  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++++|+.|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999887654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.24  E-value=0.027  Score=45.78  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...+++.|++|+|||+|+.++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988653

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.16  E-value=0.032  Score=41.65  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ++|+|.++||||+|...|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999855

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.14  E-value=0.024  Score=47.81  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.|++.|+||+|||.|.+++.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            447999999999999999998754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.12  E-value=0.028  Score=46.06  Aligned_cols=21  Identities=19%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .|+|+|++|||||||...|..
T Consensus         7 ~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.11  E-value=0.026  Score=45.91  Aligned_cols=91  Identities=16%  Similarity=0.158  Sum_probs=51.2

Q ss_pred             EEEEEEeCCCcchhchhh-------Hhhh-----cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548           77 IKAQIWDTAGQERYRAVT-------SAYY-----RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~-------~~~~-----~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                      +.+.|+||||........       ...+     ...|.+++|+|+....  +.+.. ...+....  + ..-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence            347799999953222111       1111     2478899999987432  22222 12233221  2 2346789999


Q ss_pred             CCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      ...    ....+..+....+.|+.++.  .|+.++
T Consensus       261 ~~~----~gG~~l~~~~~~~~Pi~~i~--~Ge~~~  289 (306)
T 1vma_A          261 GTA----KGGITLAIARELGIPIKFIG--VGEKAE  289 (306)
T ss_dssp             GCS----CTTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             Ccc----chHHHHHHHHHHCCCEEEEe--CCCChh
Confidence            643    22347788888999987775  344444

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.10  E-value=0.025  Score=46.41  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ++++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988654

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.10  E-value=0.02  Score=45.25  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=21.2

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      +...|+|.|..||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999887653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.05  E-value=0.011  Score=46.70  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .|++.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.03  E-value=0.031  Score=46.31  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..+|+++|++|+||||+.+.|..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999987643

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.03  E-value=0.03  Score=46.18  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .-|+|.|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            3689999999999999998764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.02  E-value=0.036  Score=43.15  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..|++.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999988653

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.02  E-value=0.029  Score=46.41  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -.++|.|++|+|||+|++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988643

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.01  E-value=0.28  Score=39.64  Aligned_cols=22  Identities=9%  Similarity=0.359  Sum_probs=16.9

Q ss_pred             eEEE-EcCCCCcHHHHHHHHhcC
Q 026548           30 KVVV-IGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v-~G~~~sGKSsli~~l~~~   51 (237)
                      ++++ .|++|+|||++++.+...
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHH
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHH
Confidence            4545 456999999999998643

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=93.99  E-value=0.46  Score=36.53  Aligned_cols=86  Identities=16%  Similarity=0.098  Sum_probs=56.9

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDA  156 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~  156 (237)
                      +.+.|+|+|+..  .......+..+|.+|+++..+ ..+...+..+++.+.........+.+|+|+.+...  ....+  
T Consensus       119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~--  191 (245)
T 3ea0_A          119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD--  191 (245)
T ss_dssp             CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH--
T ss_pred             CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH--
Confidence            457899998754  224455678899999998764 66667777777777654323455789999998543  23333  


Q ss_pred             HHHHHHcCCeEEEE
Q 026548          157 VEFAEDQGLFFSEA  170 (237)
Q Consensus       157 ~~~~~~~~~~~~~~  170 (237)
                       .+.+.++.+++.+
T Consensus       192 -~~~~~~~~~v~~~  204 (245)
T 3ea0_A          192 -EIEKVIGRPISKR  204 (245)
T ss_dssp             -HHHHHHTSCEEEE
T ss_pred             -HHHHHhCCCeEEE
Confidence             3444567776654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=93.98  E-value=0.025  Score=46.85  Aligned_cols=24  Identities=13%  Similarity=0.227  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.++|.|++|+|||+|++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988753

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=93.96  E-value=0.024  Score=46.30  Aligned_cols=25  Identities=8%  Similarity=-0.003  Sum_probs=21.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..-.++|.|+||+|||++++.+...
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988754

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=93.93  E-value=0.046  Score=45.33  Aligned_cols=25  Identities=16%  Similarity=0.315  Sum_probs=21.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ....|++.|++|+|||++.+.+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988653

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=93.90  E-value=0.023  Score=46.44  Aligned_cols=21  Identities=14%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .+++.|++|+|||+|++.+..
T Consensus        48 ~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            799999999999999998865

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=93.87  E-value=0.028  Score=48.10  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.+++.|++|+|||+|++.+.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999988753

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=93.86  E-value=0.028  Score=48.89  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .|+|+|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=93.85  E-value=0.033  Score=46.20  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.|+|.|++|+|||+|++++...
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999988754

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.78  E-value=0.031  Score=47.47  Aligned_cols=24  Identities=17%  Similarity=0.302  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.|++.|+||+|||.|++++.+.
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHHH
Confidence            457999999999999999998754

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=93.75  E-value=0.036  Score=43.70  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      ..|++.|++|+|||+|++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            579999999999999999987653

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=93.73  E-value=0.034  Score=46.33  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...|+++|++|+|||++.+.+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988753

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=93.71  E-value=0.037  Score=45.88  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...|+|.|++|+|||+|++.+...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998653

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=93.71  E-value=0.032  Score=48.20  Aligned_cols=22  Identities=14%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .|+++|++|+|||+|++.+.+.
T Consensus        51 gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-51
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-50
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-48
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-47
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	5e-47
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-46
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-46
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-43
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	6e-43
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	6e-42
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-41
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-41
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-41
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	8e-37
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	3e-36
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	8e-35
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-34
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-33
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-32
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	6e-32
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	7e-32
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	8e-32
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	9e-32
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-31
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	5e-31
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-30
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	7e-30
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	9e-30
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	9e-30
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-28
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-27
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-27
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-27
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	7e-27
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-26
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-26
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	5e-26
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	6e-26
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	4e-24
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-24
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	6e-24
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	8e-24
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-23
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-23
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	8e-23
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-22
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	5e-22
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-20
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	7e-20
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-19
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-18
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-18
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	5e-18
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-16
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	8e-16
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	3e-14
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	4e-10
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-08
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	3e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	3e-06
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	2e-05
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	1e-04
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-04
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.002
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.003
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	0.003

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  162 bits (411), Expect = 3e-51
 Identities = 80/170 (47%), Positives = 118/170 (69%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IGDS VGK+ +L RF+++ F     STIG++F+ RT+ ++GK IK QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA+G ++VYDIT  +SFD++  W+  +  HA + +  +++GNK D+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSK 195
            D R VS E   + A D G+ F E SA    NV+ AFF L ++I   + K
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  160 bits (404), Expect = 3e-50
 Identities = 108/173 (62%), Positives = 139/173 (80%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++GK IKAQIWDTA
Sbjct: 2   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 61

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQERYR +TSAYYRGA+GA++VYDI K  ++++V RW++ELR HADS+I I+L+GNKSDL
Sbjct: 62  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 121

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198
             +RAV  ++A  FAE   L F E SAL+  NV+ AF  +L EIY  VS+K++
Sbjct: 122 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  156 bits (394), Expect = 2e-48
 Identities = 81/179 (45%), Positives = 126/179 (70%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IG+S VGKS +L RF+ + +  D  STIGV+F+ +TV ++GK +K QIWDTA
Sbjct: 4   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 63

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRG+ G ++VYD+T ++SF+ V  W++E+  +A S++  +L+GNK DL
Sbjct: 64  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 123

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGK 204
            D R V  + A EFA+   + F E SAL+  NV+ AF  + ++I  ++S++ L     K
Sbjct: 124 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 182

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (384), Expect = 3e-47
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 1/169 (0%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQI 81
           D  D  FKV+++GDS VGK+ +L RF    F   +  ST+G++F+ + + ++G  +K Q+
Sbjct: 1   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGN 141
           WDTAGQER+R+VT AYYR A   +++YD+T + SFD++  W+ E+  +A   + ++L+GN
Sbjct: 61  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 120

Query: 142 KSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           K D    R V  ED  + A++ GL F E SA  G NVD AF  + +E+ 
Sbjct: 121 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (382), Expect = 5e-47
 Identities = 86/165 (52%), Positives = 120/165 (72%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
            Y+FK ++IGD  VGKS +L +FT+ +F  D   TIGVEF TR + ++G+ IK QIWDTA
Sbjct: 2   SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 61

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+RAVT +YYRGA GA++VYDIT+R +++H++ W+ + R   + +  IILIGNK+DL
Sbjct: 62  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 121

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
              R V+ E+A +FAE+ GL F EASA  G+NV+ AF    ++IY
Sbjct: 122 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (380), Expect = 1e-46
 Identities = 71/164 (43%), Positives = 109/164 (66%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D++FK+V+IG++ VGK+ ++ RFT+  F     +TIGV+F  +TV ING+ +K QIWDTA
Sbjct: 3   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 62

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R++T +YYR A   ++ YDIT  +SF  +  W+ E+  +A + +  +L+GNK DL
Sbjct: 63  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 122

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            + R VS + A EF+E Q +++ E SA   DNV+  F  L   +
Sbjct: 123 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  150 bits (380), Expect = 1e-46
 Identities = 75/163 (46%), Positives = 117/163 (71%), Gaps = 1/163 (0%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV INGK +K QIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147
           ER+R +T+AYYRGA+G ++VYDIT  ++F ++ +W + +  HA+   +++L+GNKSD+ +
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 120

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            R V+A+     A++ G+ F E+SA N DNV+  FF L + I 
Sbjct: 121 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 163

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  142 bits (359), Expect = 1e-43
 Identities = 73/165 (44%), Positives = 112/165 (67%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +T+  N K IK QIWDTA
Sbjct: 3   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQERYR +T+AYYRGA+G +++YDIT  +SF+ V  W  +++ ++  + +++L+GNK D+
Sbjct: 63  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 122

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            D R VS+E   + A+  G  F EASA +  NV   F RL+  I 
Sbjct: 123 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (355), Expect = 6e-43
 Identities = 79/172 (45%), Positives = 116/172 (67%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D++FK +VIG++  GKS +L +F + +F  DS  TIGVEF ++ + + GK +K QIWDTA
Sbjct: 3   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 62

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQER+R+VT +YYRGA GA++VYDIT R++++ +  W+ + R  A  +I IIL GNK DL
Sbjct: 63  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 122

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKE 197
              R V+  +A  FA++  L F E SAL G+NV+ AF +  ++I   +   E
Sbjct: 123 DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 174

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 6e-42
 Identities = 85/164 (51%), Positives = 113/164 (68%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
           Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R V I+GK IK QIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
           QE +R++T +YYRGA GA++VYDIT+R++F+H+  W+E+ R H+ S++ I+LIGNKSDL 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
             R V  E+   FA + GL F E SA    NV+ AF    +EIY
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 165

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (344), Expect = 2e-41
 Identities = 64/163 (39%), Positives = 104/163 (63%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + I+ Q+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF    +W++++R    S + I+L+GNK+DL D 
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           R VS E+    A++  + F E SA  G NV   F R+   + G
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 163

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (344), Expect = 3e-41
 Identities = 62/168 (36%), Positives = 102/168 (60%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIW 82
           + +    K+++IG+S VGKS +L RFT + F  +  +TIGV+F+ +T++++G   K  IW
Sbjct: 2   EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNK 142
           DTAGQER+R +T +YYRGA G ++VYD+T+R +F  +  W+ EL  +   +  + ++   
Sbjct: 62  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 121

Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
               + R V   + ++FA    + F EASA   D V  AF  L+++I 
Sbjct: 122 KIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 169

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (344), Expect = 4e-41
 Identities = 71/186 (38%), Positives = 114/186 (61%), Gaps = 15/186 (8%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---------- 75
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  N +          
Sbjct: 3   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 62

Query: 76  IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-I 134
            +  Q+WDTAGQER+R++T+A++R A+G ++++D+T +QSF +V  W+ +L+A+A     
Sbjct: 63  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 122

Query: 135 RIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVS 194
            I+LIGNK+DL D R V+   A E A+  G+ + E SA  G NV+ A   LL  I     
Sbjct: 123 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM---- 178

Query: 195 KKELEC 200
           K+  +C
Sbjct: 179 KRMEQC 184

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 8e-37
 Identities = 64/164 (39%), Positives = 95/164 (57%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
           Y FKVV++G+  VGK+ ++ R+ +N+F     +T+G  F T+ + I GK +   IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV 146
           QER+ A+   YYR + GA++VYDIT   SF  V  WV+ELR    + I + ++GNK DL 
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
             R VS ++A  +AE  G      SA     ++  F  L + + 
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 3e-36
 Identities = 74/162 (45%), Positives = 105/162 (64%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF     WV+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           RAV  ++A  +A+D  L F E SA    NV+  F  + +++ 
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 8e-35
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 2/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +KVVV+G   VGKS +  +F    F      TI  +F  + + ++      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELR-AHADSSIRIILIGNKSDLVD 147
           ++ ++   Y +   G ++VY +  +QSF  +    +++        + +IL+GNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            R VS+ +    AE+ G  F E SA +   VD  F  +++++ 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 2e-34
 Identities = 59/169 (34%), Positives = 100/169 (59%), Gaps = 6/169 (3%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
             +FKV+++GD  VGKS +++R+  N+F      TIGVEF  + + ++G  +  QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS----SIRIILIGN 141
           GQER+R++ + +YRG+   ++ + +   QSF +++ W +E   +AD     S   +++GN
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 142 KSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEI 189
           K D+ + R VS E+A  +  D G   + E SA +  NV  AF   ++ +
Sbjct: 124 KIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  116 bits (291), Expect = 2e-33
 Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 2/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            KV+++G   VGKS +  +F  +EF  D + T    ++ +   ++G+ ++  I DTAGQE
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV-VLDGEEVQIDILDTAGQE 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
            Y A+   Y+R   G + V+ IT+ +SF   A + E+ LR   D ++  +L+GNKSDL D
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            R VS E+A   A+   + + E SA    NVD  FF L++EI 
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 2e-32
 Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 14/182 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N+F  +   T+  +    TV I G+     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
            Y  +    Y      +V + +    SF++V         H       +L+G + DL D 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 149 RAVSA------------EDAVEFAE-DQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSK 195
            +               E A + A   + + + E SAL    +   F   +         
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 196 KE 197
           K+
Sbjct: 183 KK 184

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (281), Expect = 6e-32
 Identities = 74/163 (45%), Positives = 104/163 (63%), Gaps = 3/163 (1%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+V++G++AVGKS I+ RF  N+F  + + TIG  F T+ VTIN   +K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL---V 146
           + ++   YYR A  A+VVYD+TK QSF     WV+EL   A   I I L+GNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             R V+ E+  + AE++GL F E SA  G+NV+  F  + ++I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 7e-32
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
               K+VV+G   VGKS +  +F ++ F  D       +  T+  +++G   +  I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTA 62

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWV-EELRAHADSSIRIILIGNKSD 144
           GQE + A+   Y R   G ++V+ I  RQSF+ V +   + LR        ++L+GNK+D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           L   R V   +A  F     + + EASA    NVD AF +L++ + 
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 168

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (280), Expect = 8e-32
 Identities = 69/161 (42%), Positives = 97/161 (60%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            KV ++GD+ VGKS I+ RF ++ F  +   TIG  F T+TV    ++ K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           R+RA+   YYRG+  A++VYDITK ++F  +  WV ELR H   SI + + GNK DL D+
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           R V   DA ++A+     F E SA N  N++  F  + + I
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 9e-32
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V    +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + ++ E+++   D   + ++L+GNK D + 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA 121

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            R V +  A + A   G+ + E SA     V+ AF+ L++EI 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (279), Expect = 2e-31
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 14/177 (7%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
             + K VV+GD AVGK+ +L  +  + F  +   T+  +    +VT+ GK     ++DTA
Sbjct: 7   ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 65

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL 145
           GQE Y  +    Y      ++ + +    SF +V             ++  +LIG + DL
Sbjct: 66  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 125

Query: 146 VD------------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEI 189
            D             + +  E   + A++ G   + E SAL    + T F   +  I
Sbjct: 126 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 5e-31
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI  +   + V ++ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVE-ELRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT + +F+ +    E  LR      + +IL+GNK DL D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 148 MRAVSAEDAVEFA-EDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            R V  E     A +     F E+SA +  NV+  F+ L+++I 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (271), Expect = 2e-30
 Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 5/163 (3%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           +FK++VIGDS VGK+ +  RF    F   +++TIGV+F+ R V I+G+ IK Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 88  ERY-RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS-IRIILIGNKSDL 145
           ER+ +++   YYR     V VYD+T   SF  +  W+EE + H  ++ I  IL+GNK DL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASAL---NGDNVDTAFFRL 185
                V  + A +FA+   +   E SA    + D+V+  F  L
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 7e-30
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 14/174 (8%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++GK +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
            Y  +    Y     +++ + +    SF++V         H   +  IIL+G K DL D 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 149 RAVSAE------------DAVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEI 189
           +    +              +  A++ G + + E SAL    + T F   ++ +
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  107 bits (268), Expect = 9e-30
 Identities = 53/174 (30%), Positives = 96/174 (55%), Gaps = 4/174 (2%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            KV+++GDS VGK+ +++++   +F    K+TIG +F T+ V ++ +++  QIWDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS----SIRIILIGNKSD 144
           R++++  A+YRGA   V+V+D+T   +F  +  W +E    A      +   +++GNK D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198
           L + +  +            + + E SA    NV+ AF  + +      ++ EL
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 176

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 9e-30
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 2/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +++VV+G   VGKS +  +F ++ F  D   TI  +  T+   I+ +  +  I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-LRAHADSSIRIILIGNKSDLVD 147
            + A+   Y R   G ++V+ +T R SF+ + ++  + LR        +ILIGNK+DL  
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            R V+ E+  + A    + + EASA    NVD AF  L++ I 
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  102 bits (255), Expect = 4e-28
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           +++++G  A GK+ IL +    E       T          T+  K I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILI----GNKSDL 145
            R +   Y++   G + V D   R+  +     +  + A  +    ++L+     +  + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           ++   ++ +  +     +  +     A +GD +      L  ++
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  101 bits (253), Expect = 1e-27
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 9/165 (5%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    +       T          T+  K +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDL-- 145
           + R +   YY G  G + V D   R   D   + +  +    +     I++  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 146 -VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            +    +  +  +    D+  +   + A +GD +      L    
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (249), Expect = 3e-27
 Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 1/161 (0%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+VV+G+ AVGKS ++ R+ K  F  D K TIGV+F  R + +N + ++  +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR 149
           + A+T AYYRGA   V+V+  T R+SF+ ++ W E++ A     I   L+ NK DL+D  
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 122

Query: 150 AVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            +  E+A   A+   L F   S     NV   F  L ++  
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (248), Expect = 4e-27
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 3/164 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           +K+VV+GD  VGKS +  +F +  F  D   TI  +   +   I+ +     + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVE-ELRAHADSSIRIILIGNKSDLVD 147
            + A+   Y R   G ++VY +T + SF+HV R+ +  LR     S  +IL+ NK DL+ 
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEIY 190
           +R V+ +   E A    + + E SA +   NVD  F  L++ I 
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 167

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (248), Expect = 7e-27
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 14/170 (8%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K+VV+GDS  GK+ +L  F K+ F  +   T+  E  T +  I+ + I+  +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD-- 147
           Y  V    Y  +   ++ +DI++ ++ D V +  +        + +++L+G KSDL    
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 148 ----------MRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDTAFFRLL 186
                        VS +     A+  G   + E SAL  +N     F + 
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 172

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.4 bits (246), Expect = 1e-26
 Identities = 58/170 (34%), Positives = 101/170 (59%), Gaps = 7/170 (4%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING-KIIKAQIWDTAG 86
           + KV+++GDS VGK+ ++ R+  +++    K+TIG +F T+ VT++G K+   Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSS----IRIILIGNK 142
           QER++++  A+YRGA   V+VYD+T   SF+++  W +E   HA+ +       +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 143 SDLVDMRAVSAEDAVEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQEIY 190
            D  + + + +E + +        +     SA N  NVDTAF  + +   
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (244), Expect = 3e-26
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 14/174 (8%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K+V++GD A GK+ +L   +K++F      T+  E     + ++GK ++  +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
            Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL + 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 149 RAV------------SAEDAVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEI 189
                            E+  + A   G F + E SA   D V   F    +  
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 97.7 bits (242), Expect = 5e-26
 Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 13/174 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G    GK+ IL R  +      +K TIG        T++ K +K  +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRL-QIGEVVTTKPTIGFNV----ETLSYKNLKLNVWDLGGQT 72

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVD 147
             R     YY      + V D T +      ++ +  +    +     +++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 148 M---RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198
                 VS E  +   +D+      +SA+ G+ +      L+  I     +++L
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI----KEEQL 182

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (241), Expect = 6e-26
 Identities = 48/163 (29%), Positives = 68/163 (41%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           ++V V G   VGKS ++ RF K  F      T+   ++         I   QI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDK-SICTLQITDTTGSH 61

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLV 146
           ++ A+           ++VY IT RQS + +    E++        SI I+L+GNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             R V + +A   A      F E SA    NV   F  LL   
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.8 bits (229), Expect = 4e-24
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 4/164 (2%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K+ + G + VGKS ++ RF    F ++   T+         TI+ +++  +I DT   +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL-ESTYRHQATIDDEVVSMEILDT-AGQ 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVE-ELRAHADSSIRIILIGNKSDLVD 147
                   + R   G V+VYDIT R SF+ V              ++ +IL+GNK+DL  
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEIY 190
            R VS E+  + A +    F E SA  G+ N+   F+ L +E+ 
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 164

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 4e-24
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V  W  +L    + +I I+L GNK D+ D 
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 122

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYG 191
           +      ++ F   + L + + SA +  N +  F  L +++ G
Sbjct: 123 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.1 bits (227), Expect = 6e-24
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K+ ++G  +VGKS +  +F + +F      TI     T+ +T+NG+    Q+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVD 147
            Y      Y     G ++VY +T  +SF+ +     +L        I I+L+GNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            R +S E+    AE     F E+SA         F R++ E 
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 8e-24
 Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 9/165 (5%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            KV+++G    GK+ IL +F+ NE              +    I     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS-SIRIILIGNKSDL-- 145
             R+  + YY      +VV D T R+        + ++ AH D     +++  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 146 -VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            + +  +S    +   +D         AL G+ +      ++  +
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (225), Expect = 1e-23
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 3/164 (1%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           V+KV+++G   VGKS +   F         ++        R++ ++G+     ++D   Q
Sbjct: 1   VYKVLLLGAPGVGKSALARIFGGV--EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 58

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARW-VEELRAHADSSIRIILIGNKSDLV 146
           +  R +           V+VY +T + SF+  +   V+  RA     + IIL+GNKSDLV
Sbjct: 59  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 118

Query: 147 DMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
             R VS ++    A      F E SA    NV   F  ++++I 
Sbjct: 119 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 162

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 90.1 bits (222), Expect = 3e-23
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 9/165 (5%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G    GK+ IL +F   +       TI         T+  +  K  IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVD 147
             R+    Y+    G + V D   RQ      R ++ L      +   +++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 148 MRAVS---AEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             + +       ++            SA+ G+++      LL +I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 89.2 bits (220), Expect = 8e-23
 Identities = 29/168 (17%), Positives = 65/168 (38%), Gaps = 9/168 (5%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D   +++++G    GK+ +L +    +    + +           ++  +  K  +WD  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQ-----GFNIKSVQSQGFKLNVWDIG 68

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSD 144
           GQ + R    +Y+      + V D   R+ F+   + + EL      S + +++  NK D
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 145 LVD---MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           L+       ++    +    D+       SAL G+ V      + + +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.7 bits (218), Expect = 1e-22
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDT 84
           +  ++VV+IG+  VGKS + + F       DS    +G +   RT+ ++G+     + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 85  A-GQERYRAVTSAYYRGALGAVVVYDITKRQSF-DHVARWVEELRAHADSSIRIILIGNK 142
              +     +     +     ++VY IT R SF       ++  RA     I IIL+GNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 143 SDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           SDLV  R VS  +    A      F E SA    NV   F  +++++
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (214), Expect = 5e-22
 Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 7/173 (4%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            ++ V+GD+  GKS ++ RF      +        E   + + ++G+     I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGS--YQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD- 147
             +          +    + D    Q+   +   +  LR      + + L+G +  +   
Sbjct: 64  DAKFSGW--ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121

Query: 148 -MRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKEL 198
             R V    A     D     + E  A  G NVD  F  + Q++     +++L
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 174

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 82.8 bits (203), Expect = 2e-20
 Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 8/165 (4%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            ++ ++G    GK+  ++     +F  D   T+G   +     I    +  ++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR----KITKGNVTIKLWDIGGQP 58

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVD 147
           R+R++   Y RG    V + D   ++  +     +  L        I ++++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 148 ---MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               + +  +  +   +D+ +     S    DN+D     L+Q  
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.3 bits (199), Expect = 7e-20
 Identities = 26/169 (15%), Positives = 59/169 (34%), Gaps = 16/169 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
           K++ +G    GK+ +L     +       +T+   +   +  +    IK   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIG--------- 140
            R +   Y+    G V + D    + FD     ++ L   A+      +I          
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 141 -NKSDLVD-MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
            ++++L   +  ++   +      + +     S +  +    AF  L Q
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.8 bits (198), Expect = 2e-19
 Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 43/191 (22%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K++++G    GKS  + +            T G+         + + +  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQR 56

Query: 89  RYRAVTSAYYRGALGAVVVYDIT-----------KRQSFDHVARWVEELRAHADSSIRII 137
             R      +      + +  ++           + +  +  A +   +      +  +I
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 138 LIGNKSDLVDMRAVSAEDAVEFAEDQG--------------------------LFFSEAS 171
           L  NK DL++ + + +     F E  G                          ++     
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 172 ALNGDNVDTAF 182
           A + +N+   F
Sbjct: 177 ATDTENIRFVF 187

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 77.8 bits (190), Expect = 2e-18
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 9/165 (5%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            +++++G    GK+ IL R    E       T          T+  K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAH-ADSSIRIILIGNKSDLVD 147
             R     YY      + V D   R         +  +          +++  NK D+  
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 148 MRAVSA---EDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               S       +   +D+     + SA  G  +D A   L++ +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.6 bits (193), Expect = 2e-18
 Identities = 23/176 (13%), Positives = 50/176 (28%), Gaps = 20/176 (11%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
               +++++G    GKS I+ +            T G+             +   ++D  
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF----ETKFQVDKVNFHMFDVG 55

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-----------LRAHADSSI 134
           GQ   R      +      + V   +                                +I
Sbjct: 56  GQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 115

Query: 135 RIILIGNKSDLVDMRAVSAEDAV-EFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            +IL  NK DL+  + ++ +  + ++  +   + +   A      D    R    I
Sbjct: 116 SVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFI 171

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.2 bits (189), Expect = 5e-18
 Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 45/193 (23%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ 87
           + K++++G    GKS  L +            T G+           K +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGI----HEYDFEIKNVPFKMVDVGGQ 54

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEE-----------LRAHADSSIRI 136
              R      +      + +   ++        R               +     S++ I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 137 ILIGNKSDLVDMRAVSAEDAVEFAEDQG---------------------------LFFSE 169
           IL  NK+DL++ +         F E +G                           L+   
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 170 ASALNGDNVDTAF 182
            +A+N +N+   F
Sbjct: 175 TTAINTENIRLVF 187

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.3 bits (176), Expect = 3e-16
 Identities = 26/191 (13%), Positives = 54/191 (28%), Gaps = 46/191 (24%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K++++G    GKS I+ +           +  G+           K +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIV----ETHFTFKDLHFKMFDVGGQR 53

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSF-----------DHVARWVEELRAHADSSIRII 137
             R      + G    +    ++                + +  +         +   II
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 138 LIGNKSDLVDMRAVSAEDAVEFAEDQG--------------------------LFFSEAS 171
           L  NK DL + +   +   + + E  G                          ++     
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 172 ALNGDNVDTAF 182
           A +  NV   F
Sbjct: 174 ATDTKNVQFVF 184

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 70.9 bits (172), Expect = 8e-16
 Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 21/177 (11%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            K+V +G    GK+ +L     +                 +  +    +    +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLG-----QHVPTLHPTSEELTIAGMTFTTFDLGGHI 68

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWV-EELRAHADSSIRIILIGNKSDLVD 147
           + R V   Y     G V + D    +        +   +     +++ I+++GNK D  +
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 128

Query: 148 MRAVS---------------AEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             +                    +++    + L     S L        F  + Q I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.3 bits (163), Expect = 3e-14
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 7/155 (4%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER 89
            V+ +G    GK+ +  R    + + D++++I        V  N       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSF-DHVARWVEELRAHADSS---IRIILIGNKSDL 145
              +   +   A   V V D    Q     VA ++ ++   + +      +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT 180
               A SA+   +  E +        +     +D+
Sbjct: 121 AM--AKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 153

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (132), Expect = 4e-10
 Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 23/188 (12%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
           Y   +++ G    GK+ +L+  T +      + T+  +        +G  +   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 87  QERYRAVTSAYYRGALGA-----VVVYDITKRQSFDHVARWVEELRAH----ADSSIRII 137
             + R   S Y +           +V      +     A ++ ++ +      ++ I I+
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 138 LIGNKSDLVDMRAVSAE--------DAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +  NKS+L   R  S            V     + L   E      D  +     L    
Sbjct: 116 IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTD 175

Query: 190 YGAVSKKE 197
               +  E
Sbjct: 176 GFKFANLE 183

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 50.5 bits (119), Expect = 1e-08
 Identities = 28/161 (17%), Positives = 44/161 (27%), Gaps = 5/161 (3%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE 88
            KVV+ G    GKS +L+     E    +    G         I+   +   I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM 148
                            +          D       +        I  +       +V  
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +A    + +  +E  G      SA  G+ VD     L   +
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVD----VLRNHL 157

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 30/173 (17%), Positives = 52/173 (30%), Gaps = 13/173 (7%)

Query: 31  VVVIGDSAVGKSQILSRFTK------NEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDT 84
           V ++G    GKS +L+  T+         F      +GV   +         I   I   
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63

Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRI-ILIGNKS 143
           +  +        +       + V D              E          R  ++  NK 
Sbjct: 64  SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123

Query: 144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKK 196
           DL++  AV  +   +    +GL     SAL G  +      L + ++  V   
Sbjct: 124 DLLEEEAV--KALADALAREGLAVLPVSALTGAGLP----ALKEALHALVRST 170

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 8/152 (5%)

Query: 18  ENMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKII 77
            + + +    V  V V G++  GKS  ++         +  +  GV   T          
Sbjct: 46  SDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN 105

Query: 78  KAQI--WDTAGQERYRAVTSAYYR--GALGAVVVYDITKRQSFDHVARWVEELRAHADSS 133
              +  WD  G          Y              I+  +   +     + +       
Sbjct: 106 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS---MMK 162

Query: 134 IRIILIGNKSDLVDMRAVSAEDAVEFAEDQGL 165
                +  K D  D+   +  +   F +++ L
Sbjct: 163 KEFYFVRTKVD-SDITNEADGEPQTFDKEKVL 193

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 33/179 (18%), Positives = 56/179 (31%), Gaps = 18/179 (10%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWD 83
           +I    KV ++G   VGKS + +     E    S    G         +     K    D
Sbjct: 4   EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFIDGRKYVFVD 62

Query: 84  TAGQERYRAVTS--------AYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR 135
           TAG  R   V               ++    V  I    +     +              
Sbjct: 63  TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA 122

Query: 136 IILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEA-----SALNGDNVDTAFFRLLQEI 189
            +++ NK DLV  R    ++  +   ++  F   +     SA  G N+D    R++  +
Sbjct: 123 SVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNID----RMIDAM 177

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 9/163 (5%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG--Q 87
           ++V++G   VGKS +L+R    +    +    G      +  I  + I  +I DTAG   
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD 147
           E    V        L  +   DI             E+ +       +  L+      V 
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 148 MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            +    E   +   D+ +     SAL G+ ++    +L + IY
Sbjct: 121 EKINEEEIKNKLGTDRHMVK--ISALKGEGLE----KLEESIY 157

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 23/174 (13%), Positives = 46/174 (26%), Gaps = 14/174 (8%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTA 85
           D   +V   G S  GKS  L+  T  +    +  T G         +        +    
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 86  GQ-------ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIIL 138
                     +++     Y         +  +   +             A   +   ++L
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 139 IGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEA---SALNGDNVDTAFFRLLQEI 189
           +     L      +  + V  A        +    S+L    VD    +L Q++
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVD----KLRQKL 183

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 13/169 (7%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAG 86
           Y   V ++G   VGKS +L+     +    S        +     +     +    DT G
Sbjct: 4   YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPG 62

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFD------HVARWVEELRAHADSSIRIILIG 140
             +       +    +   +          D           V          + I+L+G
Sbjct: 63  LHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVG 122

Query: 141 NKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           NK D       + +   E   +        SAL+   V      L  ++
Sbjct: 123 NKLDAAKYPEEAMKAYHELLPEAEPRM--LSALDERQVA----ELKADL 165

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 29/187 (15%), Positives = 59/187 (31%), Gaps = 26/187 (13%)

Query: 31  VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTR---------TVTINGKIIKAQI 81
           ++  G S VGKS ++ R T  +     +  +  +                    +   + 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAH-------ADSSI 134
                ++          +    AV+V D               E+           +  I
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 135 RIILIGNKSDLVD-----MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             I+  NK D +      +  ++ +  V  +E   +F    SA  GDN++    RL   I
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFI-PISAKFGDNIE----RLKNRI 177

Query: 190 YGAVSKK 196
           +  + ++
Sbjct: 178 FEVIRER 184

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 8/172 (4%)

Query: 31  VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY 90
           V+++G   VGKS + ++  K +         GV       T+       ++ DT G    
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61

Query: 91  RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA 150
                +     +   ++ +           R + +        +R   +           
Sbjct: 62  PQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 121

Query: 151 VSAEDAVEFAEDQGLFFSEA---SALNGDNVDTAFFRLLQEIYGAVSKKELE 199
           +   +     E   L F E    SA +  N+D     +L+ I   + +K L+
Sbjct: 122 LREFEREVKPELYSLGFGEPIPVSAEHNINLD----TMLETIIKKLEEKGLD 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.96
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.95
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.91
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.91
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.9
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.9
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.89
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.89
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.89
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.87
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.87
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.87
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.86
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.85
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.83
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.83
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.82
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.82
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.81
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.8
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.78
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.76
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.75
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.71
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.71
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.7
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.67
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.63
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.59
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.58
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.57
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.52
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.5
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.47
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.28
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.23
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.23
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.2
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.06
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.96
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.95
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.91
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.56
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.24
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.2
d1okkd2	207	GTPase domain of the signal recognition particle r	98.19
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.19
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.18
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.1
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.08
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.06
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.01
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.0
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.99
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.92
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.45
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.36
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.34
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.29
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.28
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.2
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.15
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.12
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.09
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.07
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.05
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.05
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.01
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.99
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.99
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.98
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.98
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.93
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.91
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.84
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.82
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.82
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.81
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.79
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.78
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.73
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.71
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.7
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.68
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.67
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.66
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.65
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.64
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.6
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.59
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.54
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.54
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.54
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.53
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.53
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.52
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.49
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.49
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.49
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.47
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.45
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.45
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.43
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.41
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.41
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.36
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.35
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.33
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.33
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.32
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.31
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.28
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.28
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.25
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.17
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.15
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.14
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.11
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.09
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.08
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.03
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.99
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.98
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.98
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.96
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.89
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.87
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.76
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.66
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.59
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.58
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.57
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.56
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.54
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.54
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.53
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.46
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.44
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.37
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.3
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.25
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.18
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.08
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.04
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.0
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.91
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.7
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.59
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.56
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.51
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.39
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.36
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.32
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.28
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.25
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.2
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.09
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.07
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.02
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.0
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.85
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.83
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.72
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.6
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.59
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.51
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	93.5
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.45
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.37
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.32
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.24
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.16
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.06
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.98
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	92.93
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	92.89
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.85
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	92.82
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	92.63
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.59
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	92.39
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.38
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.14
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.04
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.03
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	91.92
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	91.64
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.6
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.43
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.27
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.25
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	91.2
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	90.36
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.97
d1xpua3	289	Transcription termination factor Rho, ATPase domai	89.78
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	89.31
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.15
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.22
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.12
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	86.32
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	85.85
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	85.19
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	85.02
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	84.0
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.79
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	82.95
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	82.37
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	81.47
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	81.2
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	80.85
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	80.56
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	80.05

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.4e-36  Score=225.14  Aligned_cols=168  Identities=43%  Similarity=0.755  Sum_probs=157.5

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      .++.+||+|+|++|+|||||+++|.++.+...+.++.+.+.....+...+..+.+.+|||||++.+..++..+++.+|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            56789999999999999999999999999888889999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |+|||+++++++..+..|+..+........|++|++||+|+.+.+.+..+++.++++.++++|++|||++|.||+++|++
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  161 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  161 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999999998887777678999999999999888888899999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 026548          185 LLQEIYGA  192 (237)
Q Consensus       185 l~~~i~~~  192 (237)
                      |++.++++
T Consensus       162 l~~~i~ek  169 (169)
T d3raba_         162 LVDVICEK  169 (169)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHhhC
Confidence            99998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=223.36  Aligned_cols=168  Identities=42%  Similarity=0.743  Sum_probs=157.7

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      .++.+||+|+|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            56789999999999999999999999999888889999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      ++|||++++.++..+..|+..+.......+|++||+||+|+.....+..++++++++.+++++++|||++|.||+++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~  161 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  161 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHH
Confidence            99999999999999999999988877678999999999999887888899999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 026548          185 LLQEIYGA  192 (237)
Q Consensus       185 l~~~i~~~  192 (237)
                      |++.+..+
T Consensus       162 l~~~l~~~  169 (171)
T d2ew1a1         162 LACRLISE  169 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99888654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9e-36  Score=223.22  Aligned_cols=163  Identities=38%  Similarity=0.619  Sum_probs=153.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|++|+|||||+++|..+.+...+.++.+.+........++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            47999999999999999999999999888889999888888899999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      ||++++.+++.+..|++.+.... .++|++||+||+|+.+.+.+..++++++++.++++|++|||++|.||+++|+.|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            99999999999999999988766 57999999999999888889999999999999999999999999999999999999


Q ss_pred             HHHH
Q 026548          188 EIYG  191 (237)
Q Consensus       188 ~i~~  191 (237)
                      .+++
T Consensus       161 ~~lq  164 (164)
T d1z2aa1         161 KHLQ  164 (164)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-35  Score=220.21  Aligned_cols=165  Identities=52%  Similarity=0.911  Sum_probs=155.9

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ++.+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            56899999999999999999999999999988888888999899999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|||+++.++++.+..|+..+........|+++++||.|+........+++.++++..+++|++|||++|.||+++|+.|
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i  161 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  161 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988777889999999999998888888899999999999999999999999999999999


Q ss_pred             HHHHH
Q 026548          186 LQEIY  190 (237)
Q Consensus       186 ~~~i~  190 (237)
                      ++.|+
T Consensus       162 ~~~i~  166 (166)
T d1z0fa1         162 AKKIY  166 (166)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98874

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-35  Score=219.69  Aligned_cols=165  Identities=27%  Similarity=0.331  Sum_probs=135.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|++|+|||||+++|.+..+.... ++. .....+.+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~~-~~~-~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCcC-Cee-eeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            379999999999999999999988764432 333 344556788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ||++++.+++.+..|+..+..... ..+|++||+||+|+...+++..+++.+++..++++|++|||++|.||+++|+.|+
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999999999999877654 6789999999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 026548          187 QEIYGAVS  194 (237)
Q Consensus       187 ~~i~~~~~  194 (237)
                      +.+..+..
T Consensus       159 ~~i~~~~~  166 (168)
T d2gjsa1         159 RQIRLRRD  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            98877654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=222.20  Aligned_cols=165  Identities=39%  Similarity=0.684  Sum_probs=148.8

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +.+||+|+|++|+|||||+++|+.+.+...+.++.+.......+..++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            57899999999999999999999999999999999999998899999989999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |||++++++++.+..|+..+........|++|++||+|+...+.++.+++++++++++++|++|||++|.||+++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999988776667889999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 026548          187 QEIYG  191 (237)
Q Consensus       187 ~~i~~  191 (237)
                      +.+++
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-35  Score=220.05  Aligned_cols=172  Identities=45%  Similarity=0.789  Sum_probs=160.7

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      +++.+||+|+|++|||||||+++|..+.+...+.++.+.......+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            46789999999999999999999999999988889988888888888899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |+|||.++++++..+..|+..+......++|++||+||+|+....+...+.+.+++..++++|++|||++|.|++++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~  161 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHH
Confidence            99999999999999999999988877788999999999999888888889999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcc
Q 026548          185 LLQEIYGAVSKK  196 (237)
Q Consensus       185 l~~~i~~~~~~~  196 (237)
                      +++.++++....
T Consensus       162 l~~~i~~~~~~~  173 (174)
T d2bmea1         162 CARKILNKIESG  173 (174)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcC
Confidence            999999887654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-35  Score=220.31  Aligned_cols=168  Identities=32%  Similarity=0.472  Sum_probs=152.3

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      +....+||+|+|++|+|||||+++|+.+.+...+.++. .+.....+.+++..+.+.+||++|.+.+...+..+++.+|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            34567999999999999999999999999888877765 45556778889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      +|+|||++++.+++.+..|+..+.... ..++|++||+||+|+...+....+++..++..++++|++|||++|.||+++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            999999999999999999999876654 3689999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 026548          183 FRLLQEIYGA  192 (237)
Q Consensus       183 ~~l~~~i~~~  192 (237)
                      +.|++.+.++
T Consensus       161 ~~l~~~i~k~  170 (173)
T d2fn4a1         161 EQLVRAVRKY  170 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988664

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=218.83  Aligned_cols=172  Identities=63%  Similarity=1.014  Sum_probs=157.6

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ++.+||+|+|++|+|||||+++|.++.+...+.++.+.......+.+++..+.+.+||++|++.+..++..+++.+|++|
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            57899999999999999999999999998888888888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      +|||.+++.++..+..|+..+......++|++||+||+|+.+.+....+....+....+.+|++|||++|.|++++|+++
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999999988887889999999999998777777888888999999999999999999999999999


Q ss_pred             HHHHHHhhhccc
Q 026548          186 LQEIYGAVSKKE  197 (237)
Q Consensus       186 ~~~i~~~~~~~~  197 (237)
                      ++.+++...+++
T Consensus       162 ~~~i~~~~~~~q  173 (175)
T d2f9la1         162 LTEIYRIVSQKQ  173 (175)
T ss_dssp             HHHHHHHHHTSC
T ss_pred             HHHHHHHhhhcc
Confidence            999988777654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=6.6e-35  Score=219.38  Aligned_cols=165  Identities=35%  Similarity=0.568  Sum_probs=148.5

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +..||+|+|++|+|||||+++|+.+.+...+.+|.+..+ ...+.+++..+.+.+||++|.+.+..++..+++.+|++|+
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            468999999999999999999999999888888887665 4567789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      |||++++.+++.+..|+..+..... .++|++||+||+|+.+.+.+..++++++++.++++|++|||++|.||+++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999999877643 689999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 026548          186 LQEIYGA  192 (237)
Q Consensus       186 ~~~i~~~  192 (237)
                      ++.+.++
T Consensus       162 ~~~i~~r  168 (168)
T d1u8za_         162 MREIRAR  168 (168)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHCc
Confidence            9988653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-34  Score=217.33  Aligned_cols=165  Identities=33%  Similarity=0.506  Sum_probs=150.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +.+||+++|++|+|||||+++|.++.+...+.++.+.. ..+.+.+++..+.+.+||++|.+.+..++..+++.+|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            36899999999999999999999999888888877654 45667789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCC-CHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGD-NVDTAFFR  184 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~~  184 (237)
                      |||++++.++..+..|+..+.+... .++|++|++||+|+...+.+..+++.+++++++++|++|||+++. ||+++|..
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            9999999999999999999876643 689999999999999888899999999999999999999999886 99999999


Q ss_pred             HHHHHHHh
Q 026548          185 LLQEIYGA  192 (237)
Q Consensus       185 l~~~i~~~  192 (237)
                      |++.++++
T Consensus       162 l~~~i~~~  169 (169)
T d1x1ra1         162 LVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=217.19  Aligned_cols=163  Identities=31%  Similarity=0.427  Sum_probs=150.1

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..+||+|+|++|+|||||+++|+++.+...+.++.+..+ .+.+.+++..+.+.+||++|.+.+..++..+++.+|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            457999999999999999999999999888888888765 4677889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      |||++++++++.+..|+..+..... .++|++||+||+|+...+.++.+++++++++++++|++|||++|.||+++|+.|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999999876544 679999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 026548          186 LQEIY  190 (237)
Q Consensus       186 ~~~i~  190 (237)
                      ++.+.
T Consensus       162 i~~~~  166 (167)
T d1xtqa1         162 ILEAE  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=216.82  Aligned_cols=168  Identities=51%  Similarity=0.857  Sum_probs=153.4

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +.+||+|+|++|+|||||+++|.++.+...+.++.+...........+..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            56899999999999999999999999988888888888888888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |||++++.+++.+..|+..+......++|++||+||+|+...+....+++..+++..+++|++|||++|.||+++|.+|+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999999887778899999999999988888889999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 026548          187 QEIYGAVS  194 (237)
Q Consensus       187 ~~i~~~~~  194 (237)
                      +.++++..
T Consensus       162 ~~i~~~~~  169 (173)
T d2a5ja1         162 KEIYRKIQ  169 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-34  Score=214.25  Aligned_cols=163  Identities=42%  Similarity=0.717  Sum_probs=154.1

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +.+||+|+|++|+|||||+++|..+.+...+.++....+.......++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            46899999999999999999999999999999999988888888889988899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |||+++++++..+..|+..+........|++||+||+|+.+.+.+..+++++++..++++|++|||++|.||+++|.+|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999998888778899999999999988888999999999999999999999999999999999998


Q ss_pred             HHH
Q 026548          187 QEI  189 (237)
Q Consensus       187 ~~i  189 (237)
                      +.|
T Consensus       163 ~~i  165 (167)
T d1z0ja1         163 RRI  165 (167)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-34  Score=215.76  Aligned_cols=162  Identities=39%  Similarity=0.715  Sum_probs=152.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|++|+|||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999998899888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      |++++.++..+..|+..+......++|++||+||+|+.+.+....+++.++++.++++|++|||++|.||+++|++|++.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999887776789999999999998888888999999999999999999999999999999999987


Q ss_pred             HH
Q 026548          189 IY  190 (237)
Q Consensus       189 i~  190 (237)
                      |.
T Consensus       161 l~  162 (164)
T d1yzqa1         161 LP  162 (164)
T ss_dssp             SC
T ss_pred             hC
Confidence            53

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9e-34  Score=217.94  Aligned_cols=174  Identities=45%  Similarity=0.796  Sum_probs=162.1

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      +.+..+||+|+|++|+|||||+++|+.+.+...+.++.+..+....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            46778999999999999999999999999988888999998888899999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      +|+|||++++.++..+..|+..+.......+|++||+||+|+.+...+..++...++...++.|++|||++|.||+++|+
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            99999999999999999999988777768899999999999988888899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccc
Q 026548          184 RLLQEIYGAVSKKE  197 (237)
Q Consensus       184 ~l~~~i~~~~~~~~  197 (237)
                      +|++.+.+......
T Consensus       162 ~l~~~i~~~~~~~~  175 (194)
T d2bcgy1         162 TMARQIKESMSQQN  175 (194)
T ss_dssp             HHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHhhhcc
Confidence            99999988776544

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.9e-35  Score=219.92  Aligned_cols=170  Identities=46%  Similarity=0.822  Sum_probs=129.9

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      .++.+||+|+|.+|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            46789999999999999999999999998888888888899999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |+|||++++.++..+..|+..+......+.|+++|+||.|+........+++..++...+++|++|||++|.||+++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~  162 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  162 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998777788999999999999887788888899999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 026548          185 LLQEIYGAVS  194 (237)
Q Consensus       185 l~~~i~~~~~  194 (237)
                      |++.|.++..
T Consensus       163 l~~~i~~k~~  172 (173)
T d2fu5c1         163 LARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcC
Confidence            9999987764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-34  Score=218.31  Aligned_cols=169  Identities=25%  Similarity=0.366  Sum_probs=146.2

Q ss_pred             CCCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcC
Q 026548           21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRG  100 (237)
Q Consensus        21 ~~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~  100 (237)
                      ...+....+||+|+|++|+|||||+++|+.+.+...+.+|.+ +...+.+...+..+.+.+||++|++.+..++..+++.
T Consensus         2 ~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~   80 (185)
T d2atxa1           2 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM   80 (185)
T ss_dssp             SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred             CCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccc
Confidence            344566789999999999999999999999999888888876 4455667778888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CcCCCHHHHHHHHHHcC-CeE
Q 026548          101 ALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQG-LFF  167 (237)
Q Consensus       101 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~  167 (237)
                      +|++++|||++++++++++..|+.........++|+++|+||+|+..            .+.+..+++.++++.++ +.|
T Consensus        81 a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~  160 (185)
T d2atxa1          81 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY  160 (185)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred             cceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEE
Confidence            99999999999999999876555554444446899999999999864            35678899999999988 689


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHH
Q 026548          168 SEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       168 ~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      ++|||++|.||+++|+.+++.++
T Consensus       161 ~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         161 VECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEecCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999999998874

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=213.19  Aligned_cols=164  Identities=45%  Similarity=0.747  Sum_probs=154.5

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..+||+|+|++|+|||||+++|+.+.+...+.++.+..+....+...+..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            35799999999999999999999999999989999999888889999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |||+++.++++.+..|+..+......++|++||+||+|+...+.++.+++++++..++++|++|||++|.||+++|++|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999998887778899999999999988888999999999999999999999999999999999998


Q ss_pred             HHHH
Q 026548          187 QEIY  190 (237)
Q Consensus       187 ~~i~  190 (237)
                      +.|.
T Consensus       165 ~~i~  168 (170)
T d1r2qa_         165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            8664

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-33  Score=212.15  Aligned_cols=163  Identities=33%  Similarity=0.522  Sum_probs=145.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|++|+|||||+++|+.+.+...+.++.+ +.....+.+++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            47999999999999999999999998888877765 55667788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ||++++.+++.+..|+..+..... ...|++||+||+|+...+.+..+++.++++.++++|++|||++|.||+++|..|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            999999999999999988766543 6799999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 026548          187 QEIYG  191 (237)
Q Consensus       187 ~~i~~  191 (237)
                      +.+.+
T Consensus       164 ~~i~k  168 (171)
T d2erya1         164 RVIRK  168 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=216.01  Aligned_cols=161  Identities=30%  Similarity=0.393  Sum_probs=145.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|++|+|||||+++|+.+.+...+.+|.+..+ .....+++..+.+.+||++|.+.+...+..+++.+|++|+|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            57999999999999999999999999888888887554 45667899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD--SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  185 (237)
                      ||+++++++..+..|+..+.....  .++|++||+||+|+...+++..++++++++.++++|++|||++|.||+++|..|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999988766543  679999999999998888899999999999999999999999999999999998


Q ss_pred             HHHH
Q 026548          186 LQEI  189 (237)
Q Consensus       186 ~~~i  189 (237)
                      ++.+
T Consensus       161 ~~~~  164 (171)
T d2erxa1         161 LNLE  164 (171)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=212.41  Aligned_cols=164  Identities=32%  Similarity=0.507  Sum_probs=145.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|++|+|||||+++|+.+.+...+.+|.+..+. ..+..++..+.+.+||++|.+.+. ....+++.+|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            479999999999999999999999999888899887754 445678889999999999998775 456788999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCC-HHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDN-VDTAFFRL  185 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~l  185 (237)
                      ||++++.++..+..|+........ .+.|+++|+||+|+...+.++.+++++++++++++|++|||++|.| |+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999999998876655443 6899999999999988888999999999999999999999999985 99999999


Q ss_pred             HHHHHHhh
Q 026548          186 LQEIYGAV  193 (237)
Q Consensus       186 ~~~i~~~~  193 (237)
                      ++.+.++.
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99887653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=218.97  Aligned_cols=170  Identities=41%  Similarity=0.698  Sum_probs=151.5

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECC----------EEEEEEEEeCCCcchhchhh
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTING----------KIIKAQIWDTAGQERYRAVT   94 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~~   94 (237)
                      .++.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++          ..+.+.+|||+|++.+..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            56789999999999999999999999998888777777777666665533          34679999999999999999


Q ss_pred             HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCC
Q 026548           95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASAL  173 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  173 (237)
                      ..+++++|++|+|||++++.+++.+..|+..+..... ...|++||+||.|+...+++..+++.+++++++++|++|||+
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak  161 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  161 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCC
Confidence            9999999999999999999999999999988765543 678899999999999888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh
Q 026548          174 NGDNVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i~~~~~  194 (237)
                      +|.||+++|++|++.+.++..
T Consensus       162 ~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         162 TGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             TTBTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999987654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=211.66  Aligned_cols=162  Identities=29%  Similarity=0.498  Sum_probs=148.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|++|+|||||+++|+++.+...+.++.+ +.......+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            58999999999999999999999998888877776 45566778899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ||++++.++..+..|+..+..... .++|++||+||+|+...+....+++..+++.++++|++|||++|.||+++|..|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~  161 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHH
Confidence            999999999999999998877554 6799999999999988888889999999999999999999999999999999999


Q ss_pred             HHHH
Q 026548          187 QEIY  190 (237)
Q Consensus       187 ~~i~  190 (237)
                      +.|.
T Consensus       162 ~~i~  165 (167)
T d1kaoa_         162 RQMN  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-33  Score=211.29  Aligned_cols=163  Identities=26%  Similarity=0.366  Sum_probs=143.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      ..||+|+|++|+|||||+++|..+.+...+.++.+ +.......+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            46899999999999999999999999888888876 44556677889999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcC-CeEEEEcCCC
Q 026548          108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQG-LFFSEASALN  174 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  174 (237)
                      ||++++.+++.+..|+.........++|++||+||+|+.+.            +.+..++++++++.++ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999877665554444468999999999998642            4578889999999998 5799999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 026548          175 GDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       175 ~~gi~~~~~~l~~~i~~  191 (237)
                      |.||+++|+.+++.+++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-33  Score=209.94  Aligned_cols=163  Identities=45%  Similarity=0.754  Sum_probs=151.2

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ..+||+|+|++|+|||||+++|..+.+...+.++.+.++..+.+..++..+.+.+||++|.+.+..++..++..+|++|+
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            46899999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC---CcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD---MRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      |||++++.+++.+..|+..+........|+++++||+|+..   .+.+..++++++++.++++|++|||++|.||+++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888777767899999999999754   367888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 026548          184 RLLQEI  189 (237)
Q Consensus       184 ~l~~~i  189 (237)
                      .|++.|
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            987654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-33  Score=208.71  Aligned_cols=166  Identities=42%  Similarity=0.740  Sum_probs=144.9

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCC-CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFD-SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      ++..+||+|+|++|+|||||+++|+.+.+... ..++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            56789999999999999999999999887654 44666778888889999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFF  183 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  183 (237)
                      +++|||++++.++..+..|+..+........|+++++||.|......+..+++.++++.++++|++|||++|.||+++|.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999888777767899999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 026548          184 RLLQEIY  190 (237)
Q Consensus       184 ~l~~~i~  190 (237)
                      +|++.|.
T Consensus       163 ~l~~~i~  169 (170)
T d2g6ba1         163 AIAKELK  169 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-33  Score=209.24  Aligned_cols=166  Identities=45%  Similarity=0.818  Sum_probs=147.7

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +.+||+|+|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++|+
T Consensus         1 ~~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T d1g16a_           1 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            36899999999999999999999999998888999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      |||++++.+++.+..|+..+........|++++++|.|+.. .....+++.+++..++++|++|||++|.||+++|++|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_          81 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHH
Confidence            99999999999999999998888878899999999999754 45668899999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 026548          187 QEIYGAV  193 (237)
Q Consensus       187 ~~i~~~~  193 (237)
                      +.+.+++
T Consensus       160 ~~i~~k~  166 (166)
T d1g16a_         160 KLIQEKI  166 (166)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcC
Confidence            9988763

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-32  Score=208.00  Aligned_cols=169  Identities=40%  Similarity=0.719  Sum_probs=154.7

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      +....+||+|+|++|+|||||+++|.++.+...+.++.+.......+.+++..+.+.+|||||++.+..++..++..+|+
T Consensus         3 ~~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T d1x3sa1           3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   82 (177)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             cccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            34567999999999999999999999999999888888888888889999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      +|+|||++++.++..+..|+..+..... ...|+++++||.|.. .+.+..++++++++.++++|++|||++|.||+++|
T Consensus        83 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f  161 (177)
T d1x3sa1          83 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999877554 678999999999975 45778889999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 026548          183 FRLLQEIYGAV  193 (237)
Q Consensus       183 ~~l~~~i~~~~  193 (237)
                      ++|++.+++.-
T Consensus       162 ~~l~~~l~~~p  172 (177)
T d1x3sa1         162 EELVEKIIQTP  172 (177)
T ss_dssp             HHHHHHHHTSG
T ss_pred             HHHHHHHccCc
Confidence            99999998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-33  Score=209.09  Aligned_cols=163  Identities=31%  Similarity=0.496  Sum_probs=146.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +.+||+|+|++|+|||||+++|+.+.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            357999999999999999999999999888888877554 4556678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHH
Q 026548          107 VYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ-GLFFSEASALNGDNVDTAFFR  184 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~  184 (237)
                      |||++++.+++.+..|+..+..... .++|++||+||+|+........+++.+++++. +++|++|||++|.||+++|.+
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999998876543 67999999999999888888899999999885 689999999999999999999


Q ss_pred             HHHHHH
Q 026548          185 LLQEIY  190 (237)
Q Consensus       185 l~~~i~  190 (237)
                      |++.|.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998774

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=216.55  Aligned_cols=161  Identities=31%  Similarity=0.571  Sum_probs=142.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|++|+|||||+++|+.+.+...+.+|.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            57999999999999999999999999888889999898888888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  187 (237)
                      ||++++++++.+..|+..+.... .++|+++|+||+|+.....  .++...++...+++|++|||++|.||+++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~--~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCC--TTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhh--hhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999987765 5899999999999976443  33456788889999999999999999999999999


Q ss_pred             HHHH
Q 026548          188 EIYG  191 (237)
Q Consensus       188 ~i~~  191 (237)
                      .++.
T Consensus       160 ~l~~  163 (170)
T d1i2ma_         160 KLIG  163 (170)
T ss_dssp             HHHT
T ss_pred             HHcc
Confidence            8864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-32  Score=204.62  Aligned_cols=162  Identities=33%  Similarity=0.577  Sum_probs=146.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|++|||||||+++|+++.+...+.++.+..+.. .+...+..+.+.+||++|.+.+...+..+++.++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            4799999999999999999999999988888888766554 456788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  186 (237)
                      ||++++.+++.+..|+..+..... .++|+++|+||+|+.. +....+++.++++.++++|++|||++|.||+++|.+|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Confidence            999999999999999999887654 5799999999999864 56678899999999999999999999999999999999


Q ss_pred             HHHHH
Q 026548          187 QEIYG  191 (237)
Q Consensus       187 ~~i~~  191 (237)
                      +.+.+
T Consensus       161 ~~i~~  165 (166)
T d1ctqa_         161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-32  Score=209.40  Aligned_cols=163  Identities=28%  Similarity=0.374  Sum_probs=142.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|++|+|||||+++|+.+.+...+.++.+.. .......++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            5899999999999999999999999988888888744 456677788899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CcCCCHHHHHHHHHHcC-CeEEEEcCCC
Q 026548          108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQG-LFFSEASALN  174 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  174 (237)
                      ||++++++|+.+..|+.........++|+++|+||+|+.+            .+.+..+++.+++..++ ++|++|||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9999999999998765555444457899999999999853            24578899999999865 7899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 026548          175 GDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       175 ~~gi~~~~~~l~~~i~~  191 (237)
                      |.||+++|+.+++.+++
T Consensus       162 ~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         162 QKGLKNVFDEAILAALE  178 (191)
T ss_dssp             CTTHHHHHHHHHHHHTS
T ss_pred             CcCHHHHHHHHHHHHhc
Confidence            99999999998887643

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-32  Score=205.98  Aligned_cols=164  Identities=28%  Similarity=0.377  Sum_probs=141.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCC-CCCCcceeEEEEEEEECCEEEEEEEEeCCC---cchhchhhHhhhcCCcE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFD-SKSTIGVEFQTRTVTINGKIIKAQIWDTAG---QERYRAVTSAYYRGALG  103 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G---~~~~~~~~~~~~~~~d~  103 (237)
                      -+||+|+|++|+|||||+++|.+..+... ..++.+.+...+.+.+++..+.+.+||+++   ++++  ++..+++.+|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            57999999999999999999998876543 345666777888888999999999999775   4444  56678899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      +|+|||++++.+++.+..|+..+..... .++|++||+||+|+...++++.+++++++..++++|++|||++|.||+++|
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHH
Confidence            9999999999999999999998876543 689999999999998888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 026548          183 FRLLQEIYGAV  193 (237)
Q Consensus       183 ~~l~~~i~~~~  193 (237)
                      ..|++.+..+.
T Consensus       161 ~~l~~~i~~rr  171 (172)
T d2g3ya1         161 EGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHcc
Confidence            99999887654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.6e-32  Score=202.86  Aligned_cols=160  Identities=43%  Similarity=0.703  Sum_probs=145.2

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-hhHhhhcCCcEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-VTSAYYRGALGAV  105 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i  105 (237)
                      +.+||+|+|++|+|||||+++|+.+.+...+.++.+.........+....+.+.+||++|...+.. .+..+++++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            368999999999999999999999999998889888888888899999999999999999887765 4677899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCC---CCCHHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALN---GDNVDTA  181 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~  181 (237)
                      +|||++++.+++.+..|+..+..... .++|++||+||+|+.+.+++..++++++++.++++|++|||++   ++||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            99999999999999999999877654 6899999999999988888999999999999999999999986   5699999


Q ss_pred             HHHHH
Q 026548          182 FFRLL  186 (237)
Q Consensus       182 ~~~l~  186 (237)
                      |++|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98873

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-32  Score=206.57  Aligned_cols=164  Identities=28%  Similarity=0.408  Sum_probs=141.7

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      +..+||+|+|++|+|||||+++|+.+.+...+.++.+. .....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceee-ceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            56799999999999999999999999998888888764 45566778999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------cCCCHHHHHHHHHHcC-CeEEEEcC
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDM------------RAVSAEDAVEFAEDQG-LFFSEASA  172 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa  172 (237)
                      +|||++++.+++.+..|+.........++|++||+||+|+...            ......++..+++.++ ++|++|||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            9999999999999876444443334468999999999997542            3456778888998887 78999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 026548          173 LNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       173 ~~~~gi~~~~~~l~~~i~  190 (237)
                      ++|.||+++|+.|++.++
T Consensus       162 k~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCCcCHHHHHHHHHHHHc
Confidence            999999999999999874

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-32  Score=206.52  Aligned_cols=167  Identities=37%  Similarity=0.660  Sum_probs=132.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEE-CCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTI-NGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      +.+||+|+|++|+|||||+++|+++.+...+.++.+.......... +...+.+.+||++|++.+...+..+++.+|+++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            3689999999999999999999999988888777766665555544 344467889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCc-CCCHHHHHHHHHHcC-CeEEEEcCCCCCCHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVDMR-AVSAEDAVEFAEDQG-LFFSEASALNGDNVD  179 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  179 (237)
                      +|||++++.+++.+..|+..+.....    .++|++|++||+|+.+.+ .+..++++++++.++ ++|++|||++|.||+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            99999999999999999998866432    478999999999997654 467888999999986 789999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 026548          180 TAFFRLLQEIYGAV  193 (237)
Q Consensus       180 ~~~~~l~~~i~~~~  193 (237)
                      ++|++|++.++++.
T Consensus       161 e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         161 TAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-31  Score=201.63  Aligned_cols=165  Identities=36%  Similarity=0.686  Sum_probs=146.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  105 (237)
                      ...+||+|+|++|+|||||+++|..+.+...+.++.+..........++..+.+.+||++|...+...+..++..+|+++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            45789999999999999999999999999888899888888888999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHHH
Q 026548          106 VVYDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDNVDT  180 (237)
Q Consensus       106 lv~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  180 (237)
                      ++||.+++.+++.+..|+..+.....    .++|++||+||+|+.+ +.+..+++++++++.+ ++|++|||++|.||++
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            99999999999999999988766532    4689999999999864 6788999999998865 8899999999999999


Q ss_pred             HHHHHHHHHHH
Q 026548          181 AFFRLLQEIYG  191 (237)
Q Consensus       181 ~~~~l~~~i~~  191 (237)
                      +|++|++.++.
T Consensus       163 ~f~~l~~~il~  173 (174)
T d1wmsa_         163 AFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998863

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-31  Score=204.63  Aligned_cols=168  Identities=32%  Similarity=0.622  Sum_probs=150.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|.+|||||||+++|+++.+...+.++.+.++....+...+..+.+.+||++|...+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999999999999999999988998888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD----SSIRIILIGNKSDLVDMRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      ||.++..++..+..|+..+.....    .++|++||+||+|+.+ +....++..+++.. .+++|++|||++|.||+++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999988866532    4689999999999865 45667777777654 57899999999999999999


Q ss_pred             HHHHHHHHHhhhcc
Q 026548          183 FRLLQEIYGAVSKK  196 (237)
Q Consensus       183 ~~l~~~i~~~~~~~  196 (237)
                      ++|++.++++....
T Consensus       161 ~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         161 QTIARNALKQETEV  174 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccc
Confidence            99999998876654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=2.5e-31  Score=201.64  Aligned_cols=164  Identities=26%  Similarity=0.384  Sum_probs=142.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      ..||+|+|++|+|||||+++|+.+.++..+.++... .....+.+++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            469999999999999999999999998888887754 4445667788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CcCCCHHHHHHHHHHcC-CeEEEEcCCC
Q 026548          108 YDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD------------MRAVSAEDAVEFAEDQG-LFFSEASALN  174 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  174 (237)
                      ||+++++||+.+..|+.........++|++||+||+|+..            .+.+..+++.+++++++ ..|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999987766554444446899999999999853            35678899999999987 5799999999


Q ss_pred             CC-CHHHHHHHHHHHHHHh
Q 026548          175 GD-NVDTAFFRLLQEIYGA  192 (237)
Q Consensus       175 ~~-gi~~~~~~l~~~i~~~  192 (237)
                      |. +++++|+.+++.++++
T Consensus       161 ~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHhcC
Confidence            97 5999999999988753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.4e-30  Score=193.05  Aligned_cols=162  Identities=21%  Similarity=0.323  Sum_probs=136.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|++|+|||||+++|++..+.... ++... ...+.+.+++..+.+.+|||+|+..+     .+++.+|++|+|
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-~t~~~-~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTESE-QYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCCC-CSSCE-EEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCcC-Cccce-eEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            699999999999999999999999875543 44443 44577888999999999999998765     378889999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCC--CcCCCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHA---DSSIRIILIGNKSDLVD--MRAVSAEDAVEFAED-QGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~  181 (237)
                      ||++++.+++.+..|+..+....   ...+|+++|+||.|+..  .+.+..+++..++.. ++++|++|||++|.|++++
T Consensus        78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~  157 (175)
T d2bmja1          78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRV  157 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHH
T ss_pred             eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHH
Confidence            99999999999999999886653   25689999999988743  456778888888665 5688999999999999999


Q ss_pred             HHHHHHHHHHhhhcc
Q 026548          182 FFRLLQEIYGAVSKK  196 (237)
Q Consensus       182 ~~~l~~~i~~~~~~~  196 (237)
                      |..+++.+.....++
T Consensus       158 F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         158 FQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhc
Confidence            999999998877654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=184.19  Aligned_cols=155  Identities=22%  Similarity=0.425  Sum_probs=127.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+++|++|+|||||+++|..+.+...+.+|.+.++.  .+..++  +.+.+||+||++.+...+..++..+|++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            479999999999999999999999988888888775543  445555  6788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFA-----EDQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      ||+++..++.....|+..+..... .++|++||+||.|+.+.  ....+..+..     ...++++++|||++|.|++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchh--hhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            999999999999888887765543 68999999999998652  2333333222     233567999999999999999


Q ss_pred             HHHHHHH
Q 026548          182 FFRLLQE  188 (237)
Q Consensus       182 ~~~l~~~  188 (237)
                      |++|++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9998874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=2.4e-28  Score=182.41  Aligned_cols=158  Identities=24%  Similarity=0.402  Sum_probs=124.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|++|||||||+++|.+..+. ...++.+..  ...+..++  +.+.+||+||++.++..+..+++.+|++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeee--eeeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            579999999999999999999988753 344665543  34455565  6788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEFAE-----DQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      ||+++..++.....++....... ..++|++||+||.|+.+.  ...++......     ..++++++|||++|.|++++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccc--cCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            99999999988877766654432 367999999999999753  33444333321     22457999999999999999


Q ss_pred             HHHHHHHHHHh
Q 026548          182 FFRLLQEIYGA  192 (237)
Q Consensus       182 ~~~l~~~i~~~  192 (237)
                      |++|++++..+
T Consensus       155 ~~~l~~~i~~r  165 (165)
T d1ksha_         155 IDWLLDDISSR  165 (165)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHcC
Confidence            99999988653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.96  E-value=3.2e-28  Score=183.57  Aligned_cols=158  Identities=22%  Similarity=0.398  Sum_probs=124.4

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcE
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~  103 (237)
                      .....+||+++|++|||||||+++|.++.+.... ++.+.  ....+...+  +.+.+||++|++.+...+..+++.+|+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~--~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeee--eEEEeccCC--eeEeEeeccccccchhHHHHHhhccce
Confidence            3345689999999999999999999998875433 33333  334455555  678899999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHH-----HHcCCeEEEEcCCCCCC
Q 026548          104 AVVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFA-----EDQGLFFSEASALNGDN  177 (237)
Q Consensus       104 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g  177 (237)
                      +|+|||+++..++..+..|+..+..... .++|++|++||+|+....  ......+..     ....+++++|||++|.|
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~g  164 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEG  164 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             eEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc--cHHHHHHHHHHHHHHhcCCEEEEEeCCCCCC
Confidence            9999999999999999888877655443 679999999999997532  333333222     23346799999999999


Q ss_pred             HHHHHHHHHHH
Q 026548          178 VDTAFFRLLQE  188 (237)
Q Consensus       178 i~~~~~~l~~~  188 (237)
                      ++++|++|++.
T Consensus       165 v~e~~~~l~~~  175 (176)
T d1fzqa_         165 VQDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.95  E-value=3.3e-28  Score=184.60  Aligned_cols=161  Identities=21%  Similarity=0.383  Sum_probs=123.5

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEE
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  104 (237)
                      ....+||+++|++|||||||+++|....+.... ++.+...  ......+  +.+.+||++|++.+...+..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-SSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccceEE--EEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            445799999999999999999999888765433 5554443  3334455  6788999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHH-----HHHcCCeEEEEcCCCCCCH
Q 026548          105 VVVYDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEF-----AEDQGLFFSEASALNGDNV  178 (237)
Q Consensus       105 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi  178 (237)
                      ++|||+++..++.....|+........ .+.|++|++||+|+.+  ..+.+++.+.     +...++.+++|||++|.|+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc--ccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            999999999999998888876544333 6799999999999865  3334443332     2234567999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 026548          179 DTAFFRLLQEIYGA  192 (237)
Q Consensus       179 ~~~~~~l~~~i~~~  192 (237)
                      +++|++|++.+.++
T Consensus       167 ~e~~~~l~~~i~~~  180 (182)
T d1moza_         167 TEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999988654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.95  E-value=4.4e-27  Score=176.96  Aligned_cols=155  Identities=24%  Similarity=0.429  Sum_probs=121.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+++|++|||||||+++|..+.+.... ++.+..  ........  +.+.+||+||...+...+..+++.+|++|+|
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   86 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFN--VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   86 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETTEE--EEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceeeee--EEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence            589999999999999999999988764432 343333  23334444  6788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcCCCHHHHHHH-----HHHcCCeEEEEcCCCCCCHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHA-DSSIRIILIGNKSDLVDMRAVSAEDAVEF-----AEDQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      ||+++..++..+..|+....... ....|++|++||+|+...  ....++.+.     +...++.+++|||++|+||+++
T Consensus        87 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~  164 (173)
T d1e0sa_          87 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  164 (173)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence            99999999999988887765533 367999999999998652  233333322     2233567999999999999999


Q ss_pred             HHHHHHHH
Q 026548          182 FFRLLQEI  189 (237)
Q Consensus       182 ~~~l~~~i  189 (237)
                      |++|.+.+
T Consensus       165 ~~~l~~~~  172 (173)
T d1e0sa_         165 LTWLTSNY  172 (173)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.94  E-value=2.6e-27  Score=175.19  Aligned_cols=154  Identities=19%  Similarity=0.341  Sum_probs=122.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEE
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~  108 (237)
                      +||+|+|++|||||||+++|.++.+...+......     ....+...+.+.+||++|...+...+..++..+++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999998876554333221     1223344578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHH-----HHHHHcCCeEEEEcCCCCCCHHHHH
Q 026548          109 DITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAV-----EFAEDQGLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~~~  182 (237)
                      |+.++.++..+..|+..+..... ...|+++++||.|+....  ...++.     ++++..++++++|||++|.||+++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc--cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            99999999999888888765443 678999999999986532  222222     2333456789999999999999999


Q ss_pred             HHHHHHH
Q 026548          183 FRLLQEI  189 (237)
Q Consensus       183 ~~l~~~i  189 (237)
                      ++|++++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.91  E-value=1.8e-23  Score=157.15  Aligned_cols=155  Identities=26%  Similarity=0.451  Sum_probs=116.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+|+|.+|||||||+++|.+.++.... ++.+.  ........+  +.+.+||+++.+.....+..++..+++++++
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~--~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v   89 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGS--NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   89 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCS--SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccce--eEEEEeecc--eEEEEeccccccccccchhhhhccceeeeee
Confidence            479999999999999999999998876443 22222  223334444  5788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFA-----EDQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      +|.++..++.....++........ ...|++||+||+|+....  ..++..+..     ...++++++|||++|+|++++
T Consensus        90 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~  167 (177)
T d1zj6a1          90 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG  167 (177)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             cccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC--cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHH
Confidence            999999988887766665544333 689999999999986532  333333333     223467999999999999999


Q ss_pred             HHHHHHHH
Q 026548          182 FFRLLQEI  189 (237)
Q Consensus       182 ~~~l~~~i  189 (237)
                      |++|.+.+
T Consensus       168 ~~~L~~~l  175 (177)
T d1zj6a1         168 LEWMMSRL  175 (177)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.91  E-value=2e-23  Score=155.19  Aligned_cols=158  Identities=22%  Similarity=0.346  Sum_probs=121.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+++|++|||||||+++|+++.+.... ++.+  ........++  +.+.+||++|...+.......+..+++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccee-cccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            489999999999999999999999875433 3433  2333444455  5788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcCCCHHHHH-H----HHHHcCCeEEEEcCCCCCCHHHH
Q 026548          108 YDITKRQSFDHVARWVEELRAH-ADSSIRIILIGNKSDLVDMRAVSAEDAV-E----FAEDQGLFFSEASALNGDNVDTA  181 (237)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~-~----~~~~~~~~~~~~Sa~~~~gi~~~  181 (237)
                      +|+.+..++.....++...... .....|+++++||.|+....  ...+.. +    ++...+++|++|||++|.||+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccc--cHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            9999988887776655554433 33678999999999986532  222222 2    23345678999999999999999


Q ss_pred             HHHHHHHHHHh
Q 026548          182 FFRLLQEIYGA  192 (237)
Q Consensus       182 ~~~l~~~i~~~  192 (237)
                      |++|++.+.++
T Consensus       158 ~~~l~~~l~~k  168 (169)
T d1upta_         158 MEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999877543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=3.3e-23  Score=156.20  Aligned_cols=154  Identities=19%  Similarity=0.122  Sum_probs=107.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCC-CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hhHhhh
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFD-SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VTSAYY   98 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~   98 (237)
                      .-.|+|+|.+|+|||||+|+|++...... ..+..+...........+  ..+.+|||||......        .....+
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccccc
Confidence            34799999999999999999999875443 224344444445555666  4678999999644322        233457


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCCCC
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNGDN  177 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  177 (237)
                      ..+|++|+|+|++++..... ..|.+.+.... .+.|+++|+||+|+....   .+....+....+ ..++++||++|.|
T Consensus        83 ~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~-~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~g  157 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDERQ  157 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHHH
T ss_pred             ccccceeeeechhhhhcccc-cchhhheeccc-cchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCCC
Confidence            89999999999988654332 34444444433 578999999999986522   223344444455 4689999999999


Q ss_pred             HHHHHHHHHHH
Q 026548          178 VDTAFFRLLQE  188 (237)
Q Consensus       178 i~~~~~~l~~~  188 (237)
                      +++++++|++.
T Consensus       158 i~~L~~~i~~~  168 (178)
T d1wf3a1         158 VAELKADLLAL  168 (178)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99888777654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4.6e-23  Score=152.38  Aligned_cols=151  Identities=21%  Similarity=0.274  Sum_probs=118.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d  109 (237)
                      ||+++|++|||||||+++|.++.+.. ..++.+...  ......+  +.+.+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE--EEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE--EEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999988753 335544332  2333333  567899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcCCCHHHHHHHHH------------HcCCeEEEEcCCCCC
Q 026548          110 ITKRQSFDHVARWVEELRAHAD-SSIRIILIGNKSDLVDMRAVSAEDAVEFAE------------DQGLFFSEASALNGD  176 (237)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~  176 (237)
                      .++...+.....|+........ .+.|+++++||.|+..  .....+..+...            ..++.+++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999988888777777655444 7899999999999865  334444443322            123469999999999


Q ss_pred             CHHHHHHHHHH
Q 026548          177 NVDTAFFRLLQ  187 (237)
Q Consensus       177 gi~~~~~~l~~  187 (237)
                      |++++|++|.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.2e-23  Score=155.76  Aligned_cols=151  Identities=23%  Similarity=0.272  Sum_probs=111.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCC-CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhch--------hhHhhhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFD-SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA--------VTSAYYR   99 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~   99 (237)
                      +||+++|.+|+|||||+|+|++.+.... ..+..+.......+...+  ..+.+||++|......        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            7999999999999999999998876532 334444444555566677  4577999999443322        2335578


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      .+|++++++|..+..+......|...+.... .++|+++|+||+|+......       +....+.+++++||++|.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCCHH
Confidence            9999999999999887777766666555544 57999999999998653221       111235679999999999999


Q ss_pred             HHHHHHHHHH
Q 026548          180 TAFFRLLQEI  189 (237)
Q Consensus       180 ~~~~~l~~~i  189 (237)
                      +++++|++.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998763

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=7.3e-23  Score=154.48  Aligned_cols=157  Identities=15%  Similarity=0.108  Sum_probs=106.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh-------chhhHhhhcCCc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY-------RAVTSAYYRGAL  102 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~d  102 (237)
                      .|+++|.+|||||||+|+|++...........+........... ....+.+|||||....       .......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeec-CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            59999999999999999999877655444444444433333332 2246789999994321       112334568899


Q ss_pred             EEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          103 GAVVVYDITKR--QSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       103 ~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                      ++++++|+...  .+......|+....... .+.|+++|+||+|+....  ..+...+.....+.+++++||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEEE--AVKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhHH--HHHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998653  23333334433321111 358999999999987633  23445566667788999999999999999


Q ss_pred             HHHHHHHHHH
Q 026548          181 AFFRLLQEIY  190 (237)
Q Consensus       181 ~~~~l~~~i~  190 (237)
                      +++.|.+.+.
T Consensus       159 L~~~i~~~l~  168 (180)
T d1udxa2         159 LKEALHALVR  168 (180)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9988877664

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.1e-22  Score=154.86  Aligned_cols=156  Identities=17%  Similarity=0.213  Sum_probs=114.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+++|..|||||||+++|....++..     +.  ....+....  +.+.+||++|++.+..++..+++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~~--~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT-----GI--VETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCC-----SE--EEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc-----cE--EEEEEEeee--eeeeeeccccccccccchhhcccCCceeeeE
Confidence            57999999999999999999988776432     22  233444555  6788999999999999999999999999999


Q ss_pred             EECCChhhH-----------HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---------------cCCCHHHHHHHH-
Q 026548          108 YDITKRQSF-----------DHVARWVEELRAHADSSIRIILIGNKSDLVDM---------------RAVSAEDAVEFA-  160 (237)
Q Consensus       108 ~d~~~~~s~-----------~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~---------------~~~~~~~~~~~~-  160 (237)
                      +|+++..++           +....|...+........|+++++||.|+...               .....++..... 
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999886554           23344444444444478999999999985321               111222222211 


Q ss_pred             H----H------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548          161 E----D------QGLFFSEASALNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       161 ~----~------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  192 (237)
                      .    .      ..+++++|||+++.+|+++|+.+.+.|+++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            1    1      234578999999999999999999888765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.7e-23  Score=160.03  Aligned_cols=160  Identities=16%  Similarity=0.179  Sum_probs=123.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv  107 (237)
                      .+||+++|..|||||||+++|..+.+.  +.||++.++.  .+....  +.+.+||++|++.+...+..+++.+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY--PFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE--EEECSS--CEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE--EEeccc--eeeeeccccccccccccccccccccceeeEe
Confidence            579999999999999999999988763  5688876643  333333  6788999999999999999999999999999


Q ss_pred             EECCChh-----------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc----------------CCCHHHHHHHH
Q 026548          108 YDITKRQ-----------SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR----------------AVSAEDAVEFA  160 (237)
Q Consensus       108 ~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~----------------~~~~~~~~~~~  160 (237)
                      ||.++..           .++....|...+......+.|+++++||.|+....                .........+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9988743           44556777777776666789999999999974311                12233333332


Q ss_pred             HH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q 026548          161 ED----------QGLFFSEASALNGDNVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       161 ~~----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~  193 (237)
                      ..          ..+.+++|||++|.+|+++|+.+.+.|+++.
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            21          2345789999999999999999988887653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=2.7e-22  Score=150.13  Aligned_cols=158  Identities=21%  Similarity=0.171  Sum_probs=102.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEEECCEEEEEEEEeCCCcch---------hchhhHhhhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVTINGKIIKAQIWDTAGQER---------YRAVTSAYYR   99 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~   99 (237)
                      .|+|+|.+|+|||||+++|++....... .+..+.......+....  ..+.+||++|...         +.......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            6999999999999999999987654322 23333333334445555  4678999999321         2223445578


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                      .+|+++++++.+....... ..++..+..   .++|++||+||+|+....  ..+...++.+.....++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~---~~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRK---STVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHH---HTCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeecccccccccc-ccccccccc---ccccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            9999999999877554332 345555554   368999999999986421  1222223333333568899999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 026548          180 TAFFRLLQEIYGAVSK  195 (237)
Q Consensus       180 ~~~~~l~~~i~~~~~~  195 (237)
                      +++++|++.+.++...
T Consensus       154 ~L~~~i~~~l~e~~~~  169 (171)
T d1mkya1         154 TMLETIIKKLEEKGLD  169 (171)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCCCC
Confidence            9999999988776543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=4.9e-22  Score=152.00  Aligned_cols=160  Identities=19%  Similarity=0.283  Sum_probs=112.0

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      +.+||+++|++|||||||+++|.   +...+.||.+...  ..+....  +.+.+||++|++.+...+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeeee--eeeeeecccceeeecccccccccccceeEE
Confidence            36899999999999999999993   5556778887543  4455566  678899999999999999999999999999


Q ss_pred             EEECCChh----------hHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCC----------------cCCCHHHHHHH
Q 026548          107 VYDITKRQ----------SFDHVARWVEELRAH-ADSSIRIILIGNKSDLVDM----------------RAVSAEDAVEF  159 (237)
Q Consensus       107 v~d~~~~~----------s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~----------------~~~~~~~~~~~  159 (237)
                      +|+.++..          .+.....|+..+... ...++|++|++||.|+.+.                .....+.+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            99998743          233344444444332 2368999999999997431                01223444444


Q ss_pred             HHH-----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q 026548          160 AED-----------QGLFFSEASALNGDNVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       160 ~~~-----------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~  193 (237)
                      ...           ..+.+++|||+++.+|+++|+.+.+.|.++.
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            332           1355778999999999999999988877654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.87  E-value=1.3e-21  Score=147.34  Aligned_cols=156  Identities=22%  Similarity=0.254  Sum_probs=112.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ...||+++|++|||||||+++|.+..+.... ++.+...  ..+..++  ..+.+||+.+...+...+..+....+++++
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccce--eEEEecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            3579999999999999999999998875443 3333332  3345566  457799999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-----------------cCCeEE
Q 026548          107 VYDITKRQSFDHVARWVEELRA-HADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-----------------QGLFFS  168 (237)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~  168 (237)
                      ++|+.+...+.....++..... ....++|++|++||.|+..  ......+.+....                 .++.++
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF  164 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEE
Confidence            9999998888776655444433 3336899999999999865  3445555544432                 134589


Q ss_pred             EEcCCCCCCHHHHHHHHHHHH
Q 026548          169 EASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       169 ~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      +|||++|.|++++|++|++.+
T Consensus       165 ~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         165 MCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEeCCCCCCHHHHHHHHHHhh
Confidence            999999999999999998653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=8.2e-22  Score=145.65  Aligned_cols=149  Identities=21%  Similarity=0.256  Sum_probs=103.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCC-CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh---------chhhHhhh
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFD-SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY---------RAVTSAYY   98 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~   98 (237)
                      +||+++|.+|+|||||+|+|++...... ..+..+.......+...+  +.+.+|||||....         .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6899999999999999999998765433 223444444445566676  56779999993221         11223346


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNV  178 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  178 (237)
                      ..+|++++|+|++++........+.. +     ...++++++||.|+...  ...++..+ ....+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~~-~-----~~~~~i~~~~k~d~~~~--~~~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILER-I-----KNKRYLVVINKVDVVEK--INEEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHHH-H-----TTSSEEEEEEECSSCCC--CCHHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhhh-c-----ccccceeeeeeccccch--hhhHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            78999999999998766544322221 1     35789999999998763  33333332 2234567999999999999


Q ss_pred             HHHHHHHHHH
Q 026548          179 DTAFFRLLQE  188 (237)
Q Consensus       179 ~~~~~~l~~~  188 (237)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999888653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.87  E-value=1.5e-21  Score=147.15  Aligned_cols=159  Identities=14%  Similarity=0.083  Sum_probs=105.0

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCC-------cceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST-------IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYR   99 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   99 (237)
                      ..++|+++|++|+|||||+|+|++.........+       .+.......+..++  ..+.++|++|+..+.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            4679999999999999999999975432222111       11111122233344  45779999999999998888999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHHHHHc----CCeEEEEcCC
Q 026548          100 GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEFAEDQ----GLFFSEASAL  173 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~  173 (237)
                      .+|++++++|+.+....+... .+..+..   .++|+++|+||+|+......  ..+...++....    +.+++++||+
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~~-~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTGE-HMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             hccccccccccccccchhhhh-hhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            999999999998854333222 2222333   47999999999998753211  111222222222    3579999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 026548          174 NGDNVDTAFFRLLQEIYG  191 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i~~  191 (237)
                      +|.|++++++.|.+.+-+
T Consensus       158 ~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcCCc
Confidence            999999999888776643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=6e-21  Score=144.42  Aligned_cols=159  Identities=22%  Similarity=0.181  Sum_probs=106.0

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcC-CCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh------------chh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFF-DSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY------------RAV   93 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------~~~   93 (237)
                      ..+||+|+|.+|+|||||+|+|++..... ...+..+.......+..++.  .+.++|+||....            ...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhHH
Confidence            36899999999999999999999877533 22233333444445666774  4678999995332            223


Q ss_pred             hHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH-----cCCeEE
Q 026548           94 TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED-----QGLFFS  168 (237)
Q Consensus        94 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~  168 (237)
                      ....++.+|++++|+|++..... ....+...+..   .+.|+++|+||+|+........++..+....     ...+++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITR-QDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhcCCEEEEeecccccchh-hHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            44556889999999999865432 22334444444   4689999999999865544444444444332     135799


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHh
Q 026548          169 EASALNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       169 ~~Sa~~~~gi~~~~~~l~~~i~~~  192 (237)
                      ++||++|.|++++++.|.+ .++.
T Consensus       161 ~vSa~~g~gv~~L~~~i~~-~~~~  183 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNL-AYAS  183 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHH-HHHH
T ss_pred             EEeCCCCCCHHHHHHHHHH-HHHh
Confidence            9999999999999988855 4443

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=3.5e-21  Score=145.36  Aligned_cols=151  Identities=22%  Similarity=0.185  Sum_probs=98.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch---------------hchhh
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER---------------YRAVT   94 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------------~~~~~   94 (237)
                      .|+++|.+|+|||||+|+|++........+..+.+.  ..+...+    +.+|||||...               +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999999876544444444332  2333343    46899999421               11122


Q ss_pred             HhhhcCCcEEEEEEECCChhhHHHH----------HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC
Q 026548           95 SAYYRGALGAVVVYDITKRQSFDHV----------ARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG  164 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~~~s~~~~----------~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~  164 (237)
                      ...++.+|++++|+|+.........          ...++.+..   .++|+++|+||+|+....+   +....+.....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQ---EVINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHH---HHHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHH---HHHHHHHHHhc
Confidence            3445789999999998764322211          112222332   4799999999999865322   11222222222


Q ss_pred             -------CeEEEEcCCCCCCHHHHHHHHHHHHHHh
Q 026548          165 -------LFFSEASALNGDNVDTAFFRLLQEIYGA  192 (237)
Q Consensus       165 -------~~~~~~Sa~~~~gi~~~~~~l~~~i~~~  192 (237)
                             ..++++||++|.|+++++++|.+.+.++
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence                   2388999999999999999998887654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=6.3e-21  Score=144.27  Aligned_cols=155  Identities=18%  Similarity=0.141  Sum_probs=99.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc----hhh---HhhhcCCc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR----AVT---SAYYRGAL  102 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~---~~~~~~~d  102 (237)
                      .|+|+|.+|||||||+|+|++........+..+.........+.+. ..+.+|||||.....    .+.   ...+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            6999999999999999999987765554444444444444444322 246799999953221    111   22345688


Q ss_pred             EEEEEEECCChhhHH---HHHHHHHHHHH--hcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHc--CCeEEEEcCCCC
Q 026548          103 GAVVVYDITKRQSFD---HVARWVEELRA--HADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQ--GLFFSEASALNG  175 (237)
Q Consensus       103 ~~ilv~d~~~~~s~~---~~~~~~~~~~~--~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~  175 (237)
                      .++++++........   ....+......  ....++|++||+||+|+.+.    .+....+...+  +.+++.+||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH----HHHHHHHHHHhccCCcEEEEECCCC
Confidence            888888766532221   11111111111  11246899999999998752    22233344433  577999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQEI  189 (237)
Q Consensus       176 ~gi~~~~~~l~~~i  189 (237)
                      .|++++++.|.+.+
T Consensus       158 ~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         158 EGLRELLFEVANQL  171 (185)
T ss_dssp             STTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999998887765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.83  E-value=9.8e-21  Score=147.92  Aligned_cols=160  Identities=17%  Similarity=0.179  Sum_probs=102.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEE----------------ECCEEEEEEEEeCCCcchhchhh
Q 026548           31 VVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVT----------------INGKIIKAQIWDTAGQERYRAVT   94 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~Dt~G~~~~~~~~   94 (237)
                      |+|+|++++|||||+++|++...........+.........                +.....++.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999987543322222211111111111                11122467899999999998888


Q ss_pred             HhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC-------------HH-------
Q 026548           95 SAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS-------------AE-------  154 (237)
Q Consensus        95 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~-------------~~-------  154 (237)
                      ...+..+|++|+|+|+.+.-.... ...+..+..   .++|++|++||+|+.......             ..       
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888899999999999987433332 233333333   478999999999986533211             00       


Q ss_pred             HHHHHHH---Hc---------------CCeEEEEcCCCCCCHHHHHHHHHHHHHHhhh
Q 026548          155 DAVEFAE---DQ---------------GLFFSEASALNGDNVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       155 ~~~~~~~---~~---------------~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~  194 (237)
                      ...+...   ..               .++++.+||.+|.|++++++.|.....+.+.
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~  221 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR  221 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            0001111   00               1368999999999999999888776544443

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.1e-19  Score=138.20  Aligned_cols=116  Identities=21%  Similarity=0.252  Sum_probs=85.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc-hhhHhhhcCCcEEEEEE
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR-AVTSAYYRGALGAVVVY  108 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~ilv~  108 (237)
                      +|+|+|++|+|||||+++|+++.+.... ++.+.++....+. ++..+.+.+||++|++.+. ..+..++..++++++||
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6999999999999999999998876544 5555444333222 3344678999999998885 46778889999999999


Q ss_pred             ECCChhhH-HHHHHHHHH-HHHh--cCCCCcEEEEEeCCCCCC
Q 026548          109 DITKRQSF-DHVARWVEE-LRAH--ADSSIRIILIGNKSDLVD  147 (237)
Q Consensus       109 d~~~~~s~-~~~~~~~~~-~~~~--~~~~~p~vvv~nK~D~~~  147 (237)
                      |+++...+ .....|+.. +...  ....+|++|++||+|+..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            99986553 444444433 3222  225689999999999975

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=1.9e-19  Score=137.20  Aligned_cols=157  Identities=17%  Similarity=0.122  Sum_probs=93.8

Q ss_pred             CceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcch----------hc---
Q 026548           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQER----------YR---   91 (237)
Q Consensus        25 ~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~---   91 (237)
                      .....+|+|+|.+|||||||+|+|++...........+.+..........   .+.+.|++|...          ..   
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHH
Confidence            33445899999999999999999998654222222222222222223332   244667666211          11   


Q ss_pred             hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHH----cCCeE
Q 026548           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAED----QGLFF  167 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~  167 (237)
                      ......+..+|++++++|++.+... ....+++.+..   .++|+++|+||+|+...... .+....+.+.    .+.++
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~~  171 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKY---YGIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH---TTCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSEE
T ss_pred             hhhhccccchhhhhhhhhccccccc-ccccccccccc---ccCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCCE
Confidence            1222344678999999999865332 22344455544   46899999999998653322 1222222222    34579


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHH
Q 026548          168 SEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       168 ~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      +.+||++|.|+++++++|.+.+
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999988765

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=5e-20  Score=143.27  Aligned_cols=159  Identities=16%  Similarity=0.193  Sum_probs=113.7

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il  106 (237)
                      ...||+++|+.|||||||+++|....+    .||.+..  ...+.+++  +.+.+||++|++.++..|..++.+++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~--~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF--ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE--EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE--EEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            467999999999999999999976654    3566643  44566676  678899999999999999999999999999


Q ss_pred             EEECCChh----------hHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc----CC--------------------
Q 026548          107 VYDITKRQ----------SFDH-VARWVEELRAHADSSIRIILIGNKSDLVDMR----AV--------------------  151 (237)
Q Consensus       107 v~d~~~~~----------s~~~-~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~----~~--------------------  151 (237)
                      ++|.++..          ...+ ...|...+......++|++|++||+|+.+.+    ..                    
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            99988632          1222 2223333333333679999999999974321    00                    


Q ss_pred             ------CHHHHHHHHH-----H--------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHhh
Q 026548          152 ------SAEDAVEFAE-----D--------QGLFFSEASALNGDNVDTAFFRLLQEIYGAV  193 (237)
Q Consensus       152 ------~~~~~~~~~~-----~--------~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~  193 (237)
                            ....+.++..     .        ..+.++++||+++.+|+.+|..+.+.|+.+.
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                  0222333221     1        1244678999999999999998887777654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.80  E-value=2.8e-19  Score=136.35  Aligned_cols=161  Identities=19%  Similarity=0.176  Sum_probs=104.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC---CCCcc--eeEEEEEEEE-------------------CCEEEEEEE
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDS---KSTIG--VEFQTRTVTI-------------------NGKIIKAQI   81 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~---~~~~~--~~~~~~~~~~-------------------~~~~~~~~l   81 (237)
                      ...++|+++|+.++|||||+++|++.......   ....+  ..+.......                   ......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            45789999999999999999999874322111   11111  1111111111                   112356889


Q ss_pred             EeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHH
Q 026548           82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEF  159 (237)
Q Consensus        82 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~  159 (237)
                      +||||+..|.......+..+|++++|+|+.+..........+..+....  ..+++|++||+|+.+....  ..+...++
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHHH
Confidence            9999999999988888899999999999987532223333333333332  3457889999998753211  12233333


Q ss_pred             HHHc---CCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          160 AEDQ---GLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       160 ~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      ....   +++++++||++|+|++++++.+.+.
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3333   3679999999999999888777654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=2e-18  Score=132.61  Aligned_cols=160  Identities=16%  Similarity=0.154  Sum_probs=100.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC---CCcc--eeEEEEEEEE------------------------CCEEEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSK---STIG--VEFQTRTVTI------------------------NGKIIK   78 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~---~~~~--~~~~~~~~~~------------------------~~~~~~   78 (237)
                      .++|+++|+.++|||||+++|++........   ....  .......+..                        ......
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   87 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR   87 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence            4799999999999999999998643221110   0000  0011111111                        011235


Q ss_pred             EEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCC--HHHH
Q 026548           79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVS--AEDA  156 (237)
Q Consensus        79 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~--~~~~  156 (237)
                      +.++|+||+..|.......+..+|++|+|+|+.+.-.....+..+..+...  ...|+||++||+|+.......  ....
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~~~~~~~  165 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEALSQYRQI  165 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchHHHHHHHHH
Confidence            889999999999888888889999999999998752112222223333332  134889999999997532211  1122


Q ss_pred             HHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          157 VEFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       157 ~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      .++....   +++++++||++|.|++++++.+...+
T Consensus       166 ~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         166 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            2222222   36799999999999999988776643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.76  E-value=9.3e-19  Score=133.20  Aligned_cols=155  Identities=15%  Similarity=0.077  Sum_probs=101.4

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC----------------CCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN----------------EFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      .++|+++|+.++|||||+++|+..                ..........+.+.....+...+  ..+.++||||+..|.
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADYV   80 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--eeEEeecCcchHHHH
Confidence            579999999999999999999742                01111112333333333333344  567899999999999


Q ss_pred             hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC---CHHHHHHHHHHcC----
Q 026548           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV---SAEDAVEFAEDQG----  164 (237)
Q Consensus        92 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~----  164 (237)
                      ......+..+|++|+|+|+.+...-+. ++.+..+...  ...|+||++||+|+..+.+.   -..++.++....+    
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            988888999999999999998543222 2223333332  23578999999998653221   1123444444443    


Q ss_pred             -CeEEEEcCCCC----------CCHHHHHHHHHH
Q 026548          165 -LFFSEASALNG----------DNVDTAFFRLLQ  187 (237)
Q Consensus       165 -~~~~~~Sa~~~----------~gi~~~~~~l~~  187 (237)
                       ++++.+||++|          .++.++++.+.+
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence             56999999987          466766665543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=5.8e-18  Score=126.78  Aligned_cols=156  Identities=22%  Similarity=0.169  Sum_probs=98.8

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcce-eEEEEEEEECCEEEEEEEEeCCCcchhch---------hhHh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGV-EFQTRTVTINGKIIKAQIWDTAGQERYRA---------VTSA   96 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------~~~~   96 (237)
                      +--.|+|+|.+|+|||||+|+|++.+.........+. .........+..  .+.++|++|......         ....
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhcccc
Confidence            3446999999999999999999998766544333333 333333444553  456788887443221         1122


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC-CeEEEEcCCCC
Q 026548           97 YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG-LFFSEASALNG  175 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  175 (237)
                      ....+++++++.|..+.....  ..+...+..   ...|.++++||.|+.............+..+++ .+++++||++|
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~~--~~~~~~l~~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  156 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPDD--EMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  156 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHHH--HHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             chhhcceeEEEEecCccchhH--HHHHHHhhh---ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCC
Confidence            335678888888877643222  222222322   467899999999986543322333444455555 57999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 026548          176 DNVDTAFFRLLQEI  189 (237)
Q Consensus       176 ~gi~~~~~~l~~~i  189 (237)
                      .|++++++.|.+.+
T Consensus       157 ~gi~~L~~~i~~~l  170 (179)
T d1egaa1         157 LNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99998887765543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=9.2e-18  Score=128.58  Aligned_cols=140  Identities=16%  Similarity=0.113  Sum_probs=92.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCC--------c---------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEF--------F---------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY   90 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   90 (237)
                      .++|+++|++++|||||+++|+...-        .         .......+.+.....+..++  .++.|+||||+..|
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~df   80 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHADY   80 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchhh
Confidence            58999999999999999999963200        0         00001334444555555566  46779999999999


Q ss_pred             chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcCC---CHHHHHHHHHHcC--
Q 026548           91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDMRAV---SAEDAVEFAEDQG--  164 (237)
Q Consensus        91 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~--  164 (237)
                      .......+..+|++|+|+|+.+.-..+..+.|.. +..   .++| ++|++||+|+.+..+.   ..+++.++....+  
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~-~~~---~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  156 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQTREHILL-ARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHH-HHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHH-HHH---cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            9988889999999999999988655444333332 333   3666 6788999998653221   1223334444333  


Q ss_pred             ---CeEEEEcCC
Q 026548          165 ---LFFSEASAL  173 (237)
Q Consensus       165 ---~~~~~~Sa~  173 (237)
                         ++++..|+.
T Consensus       157 ~~~i~~i~~sa~  168 (204)
T d2c78a3         157 GDEVPVIRGSAL  168 (204)
T ss_dssp             TTTSCEEECCHH
T ss_pred             cccceeeeeech
Confidence               457777764

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.71  E-value=1e-16  Score=124.06  Aligned_cols=151  Identities=23%  Similarity=0.260  Sum_probs=98.1

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhcCC--CcC-------------------------------CCCCCcceeEEEEE
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNE--FFF-------------------------------DSKSTIGVEFQTRT   69 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~~~--~~~-------------------------------~~~~~~~~~~~~~~   69 (237)
                      ......++|+++|+.++|||||+.+|+...  +..                               ......+.......
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            344568999999999999999999996311  100                               00111222223333


Q ss_pred             EEECCEEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCC
Q 026548           70 VTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIR-IILIGNKSDLVDM  148 (237)
Q Consensus        70 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~  148 (237)
                      +...+  ..+.|+|+||+..|.......+..+|++|+|+|+.+...-+....| ..+..   .+++ ++|++||+|+.+.
T Consensus        84 ~~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~-~~~~~---~gv~~iiv~vNK~D~~~~  157 (222)
T d1zunb3          84 FSTAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS-YIASL---LGIKHIVVAINKMDLNGF  157 (222)
T ss_dssp             EECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCEEEEEEECTTTTTS
T ss_pred             Eeccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHH-HHHHH---cCCCEEEEEEEccccccc
Confidence            33344  4578999999999999888889999999999999885333322222 22222   3555 7899999998764


Q ss_pred             cCCC----HHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 026548          149 RAVS----AEDAVEFAEDQG-----LFFSEASALNGDNVD  179 (237)
Q Consensus       149 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~  179 (237)
                      .+..    .++...+....+     ++++++||.+|+|+.
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         158 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             cceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            3211    123344555554     357899999999884

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=3.6e-17  Score=125.31  Aligned_cols=115  Identities=19%  Similarity=0.276  Sum_probs=80.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhchhhHhh----hcCCcE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAY----YRGALG  103 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~~~d~  103 (237)
                      ..+|+|+|++|||||||+|+|++..+.+    +++.......+..++  ..+.+||+||++.+...+..+    +..++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            4589999999999999999999887643    233233333333333  457899999998876665544    355688


Q ss_pred             EEEEEECCC-hhhHHHHHHHH----HHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548          104 AVVVYDITK-RQSFDHVARWV----EELRAHADSSIRIILIGNKSDLVDM  148 (237)
Q Consensus       104 ~ilv~d~~~-~~s~~~~~~~~----~~~~~~~~~~~p~vvv~nK~D~~~~  148 (237)
                      +++++|+.+ ..+++....|+    ..+......++|+++++||+|+...
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            899999765 44555555544    3344455578999999999998753

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=1e-15  Score=121.49  Aligned_cols=115  Identities=17%  Similarity=0.175  Sum_probs=83.8

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCc------------------CCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFF------------------FDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQE   88 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   88 (237)
                      +..+|+++|+.++|||||+.+|+...-.                  .......++......+.+++  .+++|+||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence            4558999999999999999998632110                  01112233344445566677  568899999999


Q ss_pred             hhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 026548           89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD  147 (237)
Q Consensus        89 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~  147 (237)
                      .|.......++.+|++|+|+|+.+.-.......| +....   .++|.++++||+|..+
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~---~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK---YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT---TTCCEEEEEECTTSTT
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH---cCCCEEEEEecccccc
Confidence            9999999999999999999999986544444334 33333   4899999999999855

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.8e-16  Score=118.98  Aligned_cols=162  Identities=19%  Similarity=0.089  Sum_probs=85.6

Q ss_pred             CCCCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCccee-EEEEEEEECCEEEEEEEEeCCCcchh-------c--
Q 026548           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVE-FQTRTVTINGKIIKAQIWDTAGQERY-------R--   91 (237)
Q Consensus        22 ~~~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~--   91 (237)
                      ..+.+..++|+++|.+|+|||||+|+|.+.+.........+.. .........+.. .+..++.++....       .  
T Consensus        10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_          10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR-LVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEE-EEECCCCC------CCHHHHHHH
T ss_pred             HCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccc-eeeeecccccchhhhhhhhhhhh
Confidence            3456778999999999999999999999877544433222222 222222233322 2222222221111       1  


Q ss_pred             -hhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHHHHHc--CCe
Q 026548           92 -AVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEFAEDQ--GLF  166 (237)
Q Consensus        92 -~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~~~~~--~~~  166 (237)
                       ..........+.++.+.+......... ..++..+..   ...++++++||+|+......  ..+...+.....  ..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             hhhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence             111122234555666666665433222 233344333   46789999999998653221  112222222222  246


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHH
Q 026548          167 FSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       167 ~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      ++.+||++|.|++++++.|.+.
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHH
Confidence            8999999999999999887653

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.63  E-value=1.2e-14  Score=114.95  Aligned_cols=112  Identities=13%  Similarity=0.131  Sum_probs=82.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCC------------------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFD------------------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY   90 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   90 (237)
                      .+|+|+|+.++|||||+.+|+...-...                  .....+.......+..++  .++.|+||||+..|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            4799999999999999999953211100                  012224444556667777  46789999999999


Q ss_pred             chhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548           91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV  146 (237)
Q Consensus        91 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~  146 (237)
                      .......++.+|++|+|+|+.+.-.......|. ....   .++|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhh---ccccccccccccccc
Confidence            999999999999999999999865544444443 3333   479999999999964

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.1e-15  Score=119.37  Aligned_cols=148  Identities=18%  Similarity=0.183  Sum_probs=98.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC--CC-----------------------------cCCCCCCcceeEEEEEEEECCEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN--EF-----------------------------FFDSKSTIGVEFQTRTVTINGKI   76 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   76 (237)
                      .++|+++|+.++|||||+.+|+..  .+                             .......++.+.....+..++  
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--   83 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--   83 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC--
Confidence            479999999999999999998521  00                             001113334444445555565  


Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhH------HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCc
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF------DHVARWVEELRAHADSSIR-IILIGNKSDLVDMR  149 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~  149 (237)
                      .++.|+||||+..|.......+..+|++|+|+|+.....-      ......+.....   .++| +||++||+|+.+..
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~---~gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH---cCCCeEEEEEECCCCCCCC
Confidence            5788999999999999999999999999999999864210      012222222222   3565 78899999987533


Q ss_pred             CCC----HHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 026548          150 AVS----AEDAVEFAEDQG-----LFFSEASALNGDNVDT  180 (237)
Q Consensus       150 ~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  180 (237)
                      ...    .++...+....+     ++++.+|+..|.|+.+
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            211    223444454444     4589999999988654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.58  E-value=1.1e-15  Score=118.52  Aligned_cols=149  Identities=17%  Similarity=0.198  Sum_probs=91.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCC-------------------------------cCCCCCCcceeEEEEEEEECCEE
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEF-------------------------------FFDSKSTIGVEFQTRTVTINGKI   76 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   76 (237)
                      .++|+++|+.++|||||+.+|+...-                               ........+.......+..++  
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~--   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK--   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS--
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC--
Confidence            57999999999999999998853110                               111112222222223333344  


Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHH------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFD------HVARWVEELRAHADSSIRIILIGNKSDLVDMR-  149 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~------~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~-  149 (237)
                      ..+.|+||||+..|.......+..+|++|+|+|+.+.....      ...+.+..... . .-.+++|++||+|+.... 
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~-~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-M-GLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-T-TCTTCEEEEECGGGSSSTT
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-h-CCCceEEEEEcccCCCccc
Confidence            57889999999999999999999999999999998742111      11111122222 1 234688899999986421 


Q ss_pred             -CCCH----HHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 026548          150 -AVSA----EDAVEFAEDQG-----LFFSEASALNGDNVDT  180 (237)
Q Consensus       150 -~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  180 (237)
                       ....    +....+...++     ++++++||..|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence             1111    22333444433     4688999999998753

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.57  E-value=3.3e-15  Score=117.19  Aligned_cols=152  Identities=16%  Similarity=0.126  Sum_probs=81.4

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCC--c-----------------------------CCCCCCcceeEEEEEEEECC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEF--F-----------------------------FDSKSTIGVEFQTRTVTING   74 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~   74 (237)
                      ...++|+++|+.++|||||+.+|+...-  .                             .......+.......+..++
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            3467999999999999999999942110  0                             00001111111111222233


Q ss_pred             EEEEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhH---H---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 026548           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF---D---HVARWVEELRAHADSSIR-IILIGNKSDLVD  147 (237)
Q Consensus        75 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~---~---~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~  147 (237)
                        ..+.+.||||+..|..........+|++++|+|+.+...-   .   .....+..+..   .++| +++++||+|+..
T Consensus       102 --~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~---~~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         102 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPS  176 (245)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTT
T ss_pred             --ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH---cCCCeEEEEEEcCCCCc
Confidence              4678999999999999888889999999999999874211   0   11222222222   2454 789999999864


Q ss_pred             Cc--CCCHHH----HHHHHHHc-------CCeEEEEcCCCCCCHHHHH
Q 026548          148 MR--AVSAED----AVEFAEDQ-------GLFFSEASALNGDNVDTAF  182 (237)
Q Consensus       148 ~~--~~~~~~----~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~  182 (237)
                      ..  +...++    ...+....       .++++++||++|+||.+++
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            21  111112    22222222       2479999999999997643

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.52  E-value=1.4e-13  Score=108.70  Aligned_cols=126  Identities=12%  Similarity=0.038  Sum_probs=79.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEEEECCEEEEEEEEeCCCcchhch-------hhHh-
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTVTINGKIIKAQIWDTAGQERYRA-------VTSA-   96 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~-   96 (237)
                      ...++|+|+|.+|+|||||+|+|++......+. +..+..........++.  .+.++||||......       .... 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~--~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF--TLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccE--EEEEEeeecccCCcchHHHHHHHHHHH
Confidence            357899999999999999999999987655433 33444455555667774  578999999432211       1111 


Q ss_pred             -hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCcCCCH
Q 026548           97 -YYRGALGAVVVYDITKRQSFDHVARWVEELRAHADS--SIRIILIGNKSDLVDMRAVSA  153 (237)
Q Consensus        97 -~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~vvv~nK~D~~~~~~~~~  153 (237)
                       .....|+++||++++...-.......+..+....+.  -.+++||+||+|.........
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~  167 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  167 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcH
Confidence             124568899998887532112222233333333221  257899999999865444443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=5.4e-14  Score=117.80  Aligned_cols=156  Identities=12%  Similarity=0.113  Sum_probs=88.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCC---cceeEEEEEEEECCEEEEEEEEeCCCcchhchh-----hHhhh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKST---IGVEFQTRTVTINGKIIKAQIWDTAGQERYRAV-----TSAYY   98 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----~~~~~   98 (237)
                      ..++|+|+|.+|+|||||+|+|++..........   ...+.....+...+. -.+.||||||.......     ....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~-~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNI-PNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSC-TTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCC-CeEEEEeCCCcccccccHHHHHHHhhh
Confidence            3689999999999999999999986543222111   111112222333222 13679999995443222     22235


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------CcCCCHHHH----H----HHHHHc
Q 026548           99 RGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVD-------MRAVSAEDA----V----EFAEDQ  163 (237)
Q Consensus        99 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~-------~~~~~~~~~----~----~~~~~~  163 (237)
                      ..+|.+|++.|..-...  + ..+...+..   .+.|+++|.||+|...       ......+..    +    +.....
T Consensus       134 ~~~d~~l~~~~~~~~~~--d-~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKN--D-IDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCHH--H-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCHH--H-HHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            67888888877543222  1 233344444   4789999999999531       111222222    1    122233


Q ss_pred             CC---eEEEEcCCCC--CCHHHHHHHHHHHH
Q 026548          164 GL---FFSEASALNG--DNVDTAFFRLLQEI  189 (237)
Q Consensus       164 ~~---~~~~~Sa~~~--~gi~~~~~~l~~~i  189 (237)
                      ++   ++|.+|..+.  .++.++.+.+.+.+
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L  238 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  238 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence            33   4788887543  47887777766654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=1e-13  Score=113.07  Aligned_cols=116  Identities=19%  Similarity=0.211  Sum_probs=80.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCC----------------cCCCCCCcceeEEEEEEEE--------------CCEE
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEF----------------FFDSKSTIGVEFQTRTVTI--------------NGKI   76 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~--------------~~~~   76 (237)
                      +..+|+|+|+.++|||||+.+|+...-                ........+.......+..              ++..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            355799999999999999999962110                0011111222222222211              2345


Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLV  146 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~  146 (237)
                      +.+.|+||||+..|.......++.+|++|+|+|+.+.-.......|.....    .++|+++++||+|..
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH----cCCCeEEEEECcccc
Confidence            779999999999999999999999999999999998655555444444333    479999999999964

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.28  E-value=8.6e-13  Score=102.68  Aligned_cols=109  Identities=14%  Similarity=-0.000  Sum_probs=64.9

Q ss_pred             EEEEEeCCCcchhchhhHh---hh--cCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 026548           78 KAQIWDTAGQERYRAVTSA---YY--RGALGAVVVYDITK---RQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMR  149 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~~~~~---~~--~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~  149 (237)
                      .+.+.|+||+..+......   +.  ...+.+++++|+..   +..+.............  ...|.++++||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHH
Confidence            4779999998776443322   22  24567899999754   33332222111111111  368999999999987532


Q ss_pred             CCC--------HHH---------------HHH---HHHH--cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 026548          150 AVS--------AED---------------AVE---FAED--QGLFFSEASALNGDNVDTAFFRLLQE  188 (237)
Q Consensus       150 ~~~--------~~~---------------~~~---~~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~  188 (237)
                      ...        ...               ...   ....  ..++++.+||++|+|+++++..|.++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            110        000               000   0111  24679999999999999999877665

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=9.5e-12  Score=100.92  Aligned_cols=100  Identities=13%  Similarity=0.043  Sum_probs=57.1

Q ss_pred             EEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHH
Q 026548           79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDA  156 (237)
Q Consensus        79 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~  156 (237)
                      +.|++|.|.-....   .+...+|.+++|.+....+..+.+..   .+.+.     +-++|+||+|+......  ...+.
T Consensus       149 ~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~---gi~e~-----aDi~VvNKaD~~~~~~~~~~~~~~  217 (327)
T d2p67a1         149 VVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GLMEV-----ADLIVINKDDGDNHTNVAIARHMY  217 (327)
T ss_dssp             EEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HHHHH-----CSEEEECCCCTTCHHHHHHHHHHH
T ss_pred             eEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhch---hhhcc-----ccEEEEEeecccchHHHHHHHHHH
Confidence            44555555332222   35567999999998766544433333   23332     23788999998653211  11112


Q ss_pred             HHHHH-------HcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 026548          157 VEFAE-------DQGLFFSEASALNGDNVDTAFFRLLQEI  189 (237)
Q Consensus       157 ~~~~~-------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i  189 (237)
                      .....       .+..+++.|||.+|.|++++++.|.++.
T Consensus       218 ~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         218 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            22221       2335799999999999999998887654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.23  E-value=1.1e-11  Score=100.40  Aligned_cols=103  Identities=15%  Similarity=0.088  Sum_probs=62.7

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDA  156 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~  156 (237)
                      +.+.|+.|.|.-....   .....+|.+++|......+..+.+..   .+.+     +.-++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~---gilE-----~aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKK---GIFE-----LADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCT---THHH-----HCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhh---hHhh-----hhheeeEeccccccchHHHHHHH
Confidence            4566788877544333   23455999999999887765443322   2222     22389999999865332222211


Q ss_pred             HHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 026548          157 VEFAE----------DQGLFFSEASALNGDNVDTAFFRLLQEIY  190 (237)
Q Consensus       157 ~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~  190 (237)
                      ..+..          .+..+++.+||.++.|+++++++|.+...
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            12222          14457999999999999999998877654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.20  E-value=8.4e-11  Score=93.47  Aligned_cols=83  Identities=22%  Similarity=0.139  Sum_probs=55.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCE---------------EEEEEEEeCCCcchhch
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGK---------------IIKAQIWDTAGQERYRA   92 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~~   92 (237)
                      .++|+++|-|+||||||+++|++........|..+.+.....+.+++.               +..+.++|+||.-...+
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            469999999999999999999988765554455555544444544432               12578999999533222


Q ss_pred             ----h---hHhhhcCCcEEEEEEEC
Q 026548           93 ----V---TSAYYRGALGAVVVYDI  110 (237)
Q Consensus        93 ----~---~~~~~~~~d~~ilv~d~  110 (237)
                          +   .-..++++|++++|+|+
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence                2   23456899999999986

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=3.9e-10  Score=90.32  Aligned_cols=122  Identities=17%  Similarity=0.231  Sum_probs=73.7

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-CCCcceeEEEEEEE-------E---CC---------------------
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-KSTIGVEFQTRTVT-------I---NG---------------------   74 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~-------~---~~---------------------   74 (237)
                      ...+|+|+|..++|||||+|+|++..+.+.. .+++..........       +   .+                     
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            3568999999999999999999998874443 23322111111110       0   00                     


Q ss_pred             ----------E--------EEEEEEEeCCCcch-------------hchhhHhhhcCCc-EEEEEEECCChhhHHHHHHH
Q 026548           75 ----------K--------IIKAQIWDTAGQER-------------YRAVTSAYYRGAL-GAVVVYDITKRQSFDHVARW  122 (237)
Q Consensus        75 ----------~--------~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~~  122 (237)
                                .        ...+.|+|+||...             ...+...|+...+ ++++|.++....+......+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                      0        01267999999432             1234455666666 55666667665554444444


Q ss_pred             HHHHHHhcCCCCcEEEEEeCCCCCCCcCC
Q 026548          123 VEELRAHADSSIRIILIGNKSDLVDMRAV  151 (237)
Q Consensus       123 ~~~~~~~~~~~~p~vvv~nK~D~~~~~~~  151 (237)
                      ...+..   ...++++|+||+|.......
T Consensus       185 ~~~~~~---~~~r~i~Vltk~D~~~~~~~  210 (299)
T d2akab1         185 AKEVDP---QGQRTIGVITKLDLMDEGTD  210 (299)
T ss_dssp             HHHHCT---TCSSEEEEEECGGGSCTTCC
T ss_pred             HHHhCc---CCCceeeEEeccccccchhh
Confidence            444322   45789999999998654433

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.96  E-value=1.3e-09  Score=87.57  Aligned_cols=117  Identities=18%  Similarity=0.248  Sum_probs=68.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCCcCCCC-CCcceeEEEEEE------------------------------------
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEFFFDSK-STIGVEFQTRTV------------------------------------   70 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~------------------------------------   70 (237)
                      ..+|+|+|..++|||||+|+|++..+.+... +++.........                                    
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            4689999999999999999999988754433 221111111000                                    


Q ss_pred             ----------------------EECCEEEEEEEEeCCCcch-------------hchhhHhhhcCCcEEEEEE-ECCChh
Q 026548           71 ----------------------TINGKIIKAQIWDTAGQER-------------YRAVTSAYYRGALGAVVVY-DITKRQ  114 (237)
Q Consensus        71 ----------------------~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~-d~~~~~  114 (237)
                                            ..+. ...+.|+|+||...             ...++..|+..++.+|+++ +.....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~  182 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHhcCCCCcccccceEEEecCCC-CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccc
Confidence                                  0000 01367999999432             2345667888998866665 444322


Q ss_pred             hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548          115 SFDHVARWVEELRAHADSSIRIILIGNKSDLVDM  148 (237)
Q Consensus       115 s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~  148 (237)
                      .......+...+   ......+++|+||+|....
T Consensus       183 ~~~~~~~~~~~~---~~~~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         183 ANSDALQLAKEV---DPEGKRTIGVITKLDLMDK  213 (306)
T ss_dssp             TTCSHHHHHHHH---CSSCSSEEEEEECTTSSCS
T ss_pred             cccHHHHHHHHh---CcCCCeEEEEEeccccccc
Confidence            222233333333   2245689999999998643

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=5.6e-10  Score=90.29  Aligned_cols=83  Identities=23%  Similarity=0.209  Sum_probs=44.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEE--E--------------------CCEEEEEEEEeCCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVT--I--------------------NGKIIKAQIWDTAG   86 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~--~--------------------~~~~~~~~l~Dt~G   86 (237)
                      ++|+++|.||||||||+|+|++........|.++.+.......  .                    ......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4799999999999999999998876555445544433222111  0                    11335688999999


Q ss_pred             cchh----chhhH---hhhcCCcEEEEEEECC
Q 026548           87 QERY----RAVTS---AYYRGALGAVVVYDIT  111 (237)
Q Consensus        87 ~~~~----~~~~~---~~~~~~d~~ilv~d~~  111 (237)
                      .-..    ..+..   ..++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            4332    11222   2357899999999975

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.91  E-value=3.7e-09  Score=84.47  Aligned_cols=86  Identities=16%  Similarity=0.117  Sum_probs=60.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCc-CCCCCCcceeEEEEEEEECCE---------------EEEEEEEeCCCcchh
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFF-FDSKSTIGVEFQTRTVTINGK---------------IIKAQIWDTAGQERY   90 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~   90 (237)
                      ..++|+++|.|+||||||+|+|++...+ ....|.++.+.....+.+++.               ...+.+.|.||...-
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            4579999999999999999999976542 344466666555555555432               246789999984322


Q ss_pred             c-------hhhHhhhcCCcEEEEEEECCC
Q 026548           91 R-------AVTSAYYRGALGAVVVYDITK  112 (237)
Q Consensus        91 ~-------~~~~~~~~~~d~~ilv~d~~~  112 (237)
                      .       ...-..++.+|++|+|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence            1       223345689999999999754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.56  E-value=2.8e-08  Score=78.36  Aligned_cols=60  Identities=22%  Similarity=0.360  Sum_probs=38.2

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCc
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQ   87 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   87 (237)
                      .....++|+|+|.||+|||||+|+|.+.+..... +..+.+.....+..+.   .+.++||||.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEEECCC---CeEEecCCCc
Confidence            3456799999999999999999999998765443 2223333333344433   3679999994

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.24  E-value=4.4e-06  Score=60.57  Aligned_cols=23  Identities=22%  Similarity=0.700  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .||+|+|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            38999999999999999998864

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=1.4e-06  Score=65.91  Aligned_cols=84  Identities=15%  Similarity=0.127  Sum_probs=59.8

Q ss_pred             hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHH--HcCCeEEEEcCC
Q 026548           97 YYRGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAE--DQGLFFSEASAL  173 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~  173 (237)
                      ...+.|.+++|+++.+|. +...+.+|+-....   .+++.+||+||+|+.+...  .+...++..  ..+.+++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEeccc
Confidence            457899999999998854 45556666655544   4799999999999975221  222333333  234679999999


Q ss_pred             CCCCHHHHHHHH
Q 026548          174 NGDNVDTAFFRL  185 (237)
Q Consensus       174 ~~~gi~~~~~~l  185 (237)
                      ++.|++++...+
T Consensus        82 ~~~g~~~L~~~l   93 (225)
T d1u0la2          82 TGMGIEELKEYL   93 (225)
T ss_dssp             TCTTHHHHHHHH
T ss_pred             cchhHhhHHHHh
Confidence            999999877655

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.19  E-value=8.6e-07  Score=66.46  Aligned_cols=91  Identities=13%  Similarity=0.083  Sum_probs=54.5

Q ss_pred             EEEEEEeCCCcchhchhh----Hhh---h-----cCCcEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 026548           77 IKAQIWDTAGQERYRAVT----SAY---Y-----RGALGAVVVYDITKR-QSFDHVARWVEELRAHADSSIRIILIGNKS  143 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~----~~~---~-----~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~  143 (237)
                      ..+.|+||+|...+....    ..+   .     ...+-+++|+|++.. +....+...+..+.       +--+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~-------~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC-------CceEEEecc
Confidence            357899999955443221    111   1     234678999998764 33444433333321       224789999


Q ss_pred             CCCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          144 DLVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       144 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                      |-...    .-.+..++...+.|+..++  +|+++++
T Consensus       162 Det~~----~G~~l~~~~~~~~Pi~~i~--~Gq~p~D  192 (207)
T d1okkd2         162 DGTAK----GGVLIPIVRTLKVPIKFVG--VGEGPDD  192 (207)
T ss_dssp             TSSCC----CTTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChHh
Confidence            96432    2346677888999987777  4555543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=1.1e-06  Score=66.07  Aligned_cols=91  Identities=18%  Similarity=0.102  Sum_probs=54.9

Q ss_pred             EEEEEeCCCcchhchhh----Hhhh---c-----CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 026548           78 KAQIWDTAGQERYRAVT----SAYY---R-----GALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDL  145 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~~~----~~~~---~-----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~  145 (237)
                      .+.|+||+|...+....    ..+.   .     ..+-.++|+|++...  +.+......+...    -+--+++||.|.
T Consensus        95 d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~~~lI~TKlDe  168 (213)
T d1vmaa2          95 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAV----NVTGIILTKLDG  168 (213)
T ss_dssp             SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHS----CCCEEEEECGGG
T ss_pred             CEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhcccc----CCceEEEecccC
Confidence            47899999944433211    1111   1     246689999987542  2232322333222    133588999996


Q ss_pred             CCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          146 VDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                      ..    ..-.+..++...+.|+..++  +|..+++
T Consensus       169 ~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         169 TA----KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             CS----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CC----cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            43    23467788889999988887  6777654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.18  E-value=3.4e-07  Score=69.36  Aligned_cols=59  Identities=19%  Similarity=0.111  Sum_probs=35.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCCC------CCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFDS------KSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      ..+++|++|+|||||+|+|.+.......      .....++.....+.+++..   .|+||||...+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            5799999999999999999876432221      1111122223344454332   399999965543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=2.7e-06  Score=63.81  Aligned_cols=90  Identities=13%  Similarity=0.126  Sum_probs=55.0

Q ss_pred             EEEEEeCCCcchhchh----hH---hhhc-----CCcEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548           78 KAQIWDTAGQERYRAV----TS---AYYR-----GALGAVVVYDITKR-QSFDHVARWVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~~----~~---~~~~-----~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                      .+.|+||+|.......    +.   ...+     ..+-.++|+|++.. +....+...+..+       -+--+++||.|
T Consensus        93 d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lIlTKlD  165 (211)
T d2qy9a2          93 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------GLTGITLTKLD  165 (211)
T ss_dssp             SEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------CCCEEEEECCT
T ss_pred             CEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-------CCceEEEeecC
Confidence            4789999994433221    11   1222     24578899998753 3333333322221       13358899999


Q ss_pred             CCCCcCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          145 LVDMRAVSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                      -..    ..-.+...+...++|+..++  +|+.|++
T Consensus       166 e~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         166 GTA----KGGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TCT----TTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCC----CccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            643    23467788889999988887  7777754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.08  E-value=2.9e-06  Score=66.43  Aligned_cols=93  Identities=14%  Similarity=0.052  Sum_probs=64.9

Q ss_pred             hHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcCCeEEEEcCC
Q 026548           94 TSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQGLFFSEASAL  173 (237)
Q Consensus        94 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  173 (237)
                      ....+..+|++|+|+|+.++.+..+-     .+.... .+.|+++|+||+|+....  ..+...+.....+..++.+|+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~-----~l~~~~-~~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNP-----MIEDIL-KNKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHC-SSSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCH-----HHHHHH-cCCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeecc
Confidence            45578999999999999987665431     122222 267999999999987532  1223333344556789999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh
Q 026548          174 NGDNVDTAFFRLLQEIYGAVS  194 (237)
Q Consensus       174 ~~~gi~~~~~~l~~~i~~~~~  194 (237)
                      ++.++.++...+.+.+.+...
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~  101 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKFD  101 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHHH
T ss_pred             cCCCccccchhhhhhhhhhhh
Confidence            999999888777776665543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.06  E-value=1e-05  Score=60.61  Aligned_cols=90  Identities=22%  Similarity=0.221  Sum_probs=55.8

Q ss_pred             EEEEEeCCCcchhch------hhHhhh--cCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 026548           78 KAQIWDTAGQERYRA------VTSAYY--RGALGAVVVYDITKRQ-SFDHVARWVEELRAHADSSIRIILIGNKSDLVDM  148 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~------~~~~~~--~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~  148 (237)
                      .+.|+||+|...+..      ....+.  -..+-+++|++++... ..+.+..   .+..   .+ +--+++||.|... 
T Consensus        96 d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~---~~~~---~~-~~~lI~TKlDet~-  167 (211)
T d1j8yf2          96 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASK---FNQA---SK-IGTIIITKMDGTA-  167 (211)
T ss_dssp             SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHH---HHHH---CT-TEEEEEECTTSCS-
T ss_pred             ceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhh---hhcc---cC-cceEEEecccCCC-
Confidence            578999999543321      111111  2456788999987643 2222222   2222   12 2347799999643 


Q ss_pred             cCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 026548          149 RAVSAEDAVEFAEDQGLFFSEASALNGDNVDT  180 (237)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  180 (237)
                         ..-.+..++...++|+..++  +|.++++
T Consensus       168 ---~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ---KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ---CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ---cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence               46678888999999988887  6777754

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.01  E-value=2.2e-05  Score=58.64  Aligned_cols=89  Identities=16%  Similarity=0.070  Sum_probs=50.6

Q ss_pred             EEEEEeCCCcchhchhh----Hhh--hcCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcC
Q 026548           78 KAQIWDTAGQERYRAVT----SAY--YRGALGAVVVYDITKRQS-FDHVARWVEELRAHADSSIRIILIGNKSDLVDMRA  150 (237)
Q Consensus        78 ~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~  150 (237)
                      .+.|+||+|........    ..+  ....+-+++|.|++..+. .+.+.    .+....  + +--+++||.|...   
T Consensus        94 d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~----~f~~~~--~-~~~~I~TKlDe~~---  163 (207)
T d1ls1a2          94 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR----AFDEKV--G-VTGLVLTKLDGDA---  163 (207)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHH----HHHHHT--C-CCEEEEECGGGCS---
T ss_pred             cceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHH----HHHhhC--C-CCeeEEeecCccc---
Confidence            57799999954443321    122  235678899999876532 22222    222221  1 2248899999533   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 026548          151 VSAEDAVEFAEDQGLFFSEASALNGDNVD  179 (237)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  179 (237)
                       ..-.+..++...+.|+..++  .|+..+
T Consensus       164 -~~G~~l~~~~~~~~Pi~~i~--~Gq~pe  189 (207)
T d1ls1a2         164 -RGGAALSARHVTGKPIYFAG--VSEKPE  189 (207)
T ss_dssp             -SCHHHHHHHHHHCCCEEEEC--------
T ss_pred             -cchHHHHHHHHHCCCEEEEe--CCCChh
Confidence             34567788889999987775  344443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=6.5e-05  Score=56.64  Aligned_cols=71  Identities=10%  Similarity=-0.014  Sum_probs=41.0

Q ss_pred             CCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCCCHHHHHHHHHHcC--CeEEEEcCCCCC
Q 026548          100 GALGAVVVYDITKRQSF-DHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVEFAEDQG--LFFSEASALNGD  176 (237)
Q Consensus       100 ~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~  176 (237)
                      ..+++|.++|+...... .....+..++...      =+||+||+|+..+    .+..++..+.++  +++++++ .-..
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~A------D~ivlNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~-~g~v  189 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAGE----AEKLHERLARINARAPVYTVT-HGDI  189 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHHHTC------SEEEEECTTTCSC----THHHHHHHHHHCSSSCEEECC-SSCC
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHHhC------CcccccccccccH----HHHHHHHHHHHhCCCeEEEee-CCcc
Confidence            35788999999874322 2222233333332      2789999998752    245566666655  5677655 3334


Q ss_pred             CHHHH
Q 026548          177 NVDTA  181 (237)
Q Consensus       177 gi~~~  181 (237)
                      .++.+
T Consensus       190 ~~~~l  194 (222)
T d1nija1         190 DLGLL  194 (222)
T ss_dssp             CGGGG
T ss_pred             CHHHh
Confidence            55544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.99  E-value=9e-07  Score=67.21  Aligned_cols=58  Identities=21%  Similarity=0.213  Sum_probs=32.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCCcCC------CCCCcceeEEEEEEEECCEEEEEEEEeCCCcchhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEFFFD------SKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYR   91 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   91 (237)
                      ..+++|++|+|||||+|+|.+......      ......++.....+..+|.    .|+||||...+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            467999999999999999987643221      1111111112222345553    288999976654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.92  E-value=1.4e-06  Score=66.16  Aligned_cols=86  Identities=17%  Similarity=0.147  Sum_probs=60.8

Q ss_pred             hhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcCC--CHHHHHHHHHHcCCeEEEEcCC
Q 026548           97 YYRGALGAVVVYDITKR-QSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAV--SAEDAVEFAEDQGLFFSEASAL  173 (237)
Q Consensus        97 ~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~  173 (237)
                      ...+.|.+++|+++.+| .++..+.+++-....   .+++.+||+||+|+..+.+.  ..+...+.....|++++.+|++
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecC
Confidence            45789999999999875 455666666555444   57999999999999753221  1112233445678999999999


Q ss_pred             CCCCHHHHHHHH
Q 026548          174 NGDNVDTAFFRL  185 (237)
Q Consensus       174 ~~~gi~~~~~~l  185 (237)
                      ++.|++++...+
T Consensus        84 ~~~gl~~L~~~l   95 (231)
T d1t9ha2          84 DQDSLADIIPHF   95 (231)
T ss_dssp             HHTTCTTTGGGG
T ss_pred             ChhHHHHHHHhh
Confidence            999988766544

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.45  E-value=2.9e-05  Score=56.03  Aligned_cols=40  Identities=8%  Similarity=0.048  Sum_probs=27.2

Q ss_pred             HHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHhhhccc
Q 026548          155 DAVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKE  197 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~i~~~~~~~~  197 (237)
                      ...+...+++.+++.+..   .++++.++.+.+.|-+.+...+
T Consensus       147 ~~~~~l~~~~~~~i~i~~---~~~~e~~~~i~~~I~~ll~~~~  186 (192)
T d1lw7a2         147 LLKKLLDKYKVPYIEIES---PSYLDRYNQVKAVIEKVLNEEE  186 (192)
T ss_dssp             HHHHHHHGGGCCCEEEEC---SSHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHCCCCEEEeCC---CCHHHHHHHHHHHHHHHHCcCc
Confidence            345556677888877753   4688888888777766655444

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.36  E-value=5.2e-05  Score=54.25  Aligned_cols=26  Identities=12%  Similarity=0.309  Sum_probs=22.3

Q ss_pred             ceeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           26 DYVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        26 ~~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      +...+|+|.|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            34679999999999999999998653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.34  E-value=4.7e-05  Score=54.37  Aligned_cols=23  Identities=17%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..+|+|.|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998854

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=6e-05  Score=53.64  Aligned_cols=21  Identities=19%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -|+|+|.+|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999975

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.28  E-value=7.2e-05  Score=54.70  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..++|+++|+|||||||+.+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999998864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.20  E-value=8.8e-05  Score=51.89  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |++.|+||||||||+++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998643

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.15  E-value=0.00013  Score=53.52  Aligned_cols=24  Identities=29%  Similarity=0.577  Sum_probs=21.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +.++|+|+|+|||||||+...|..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999998875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.12  E-value=0.00012  Score=52.83  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +|+|+|+|||||||+.+.|..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.09  E-value=0.00012  Score=53.35  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +.+|+|+|+|||||||+.+.|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999988753

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00025  Score=55.18  Aligned_cols=61  Identities=18%  Similarity=0.155  Sum_probs=39.9

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcCCCcCCC-----CCCcceeEEEEEEEECCEEEEEEEEeCCCcc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKNEFFFDS-----KSTIGVEFQTRTVTINGKIIKAQIWDTAGQE   88 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   88 (237)
                      +..=|.|+|+.++|||+|+|.|.+.......     ..|.++-.....+. .+....+.++||.|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~-~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLG   96 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeecc-CCCCceEEEEeccccc
Confidence            4667899999999999999999987643321     23344332222221 2333467899999954

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.05  E-value=0.0002  Score=52.39  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=19.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +.-|+|+|+|||||||+.+.|..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.05  E-value=0.00016  Score=52.28  Aligned_cols=22  Identities=18%  Similarity=0.510  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .+|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.01  E-value=0.00017  Score=51.23  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -|+|.|++||||||+.++|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998753

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.99  E-value=0.00019  Score=51.95  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +|+|+|+|||||||+.+.|..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.99  E-value=0.00019  Score=51.18  Aligned_cols=20  Identities=20%  Similarity=0.459  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 026548           31 VVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~   50 (237)
                      |.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999998864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.0002  Score=51.77  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .+|+|+|+|||||||+.+.|..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00019  Score=51.77  Aligned_cols=22  Identities=14%  Similarity=0.421  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .+|+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999988753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00021  Score=50.11  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999988653

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00023  Score=50.94  Aligned_cols=21  Identities=24%  Similarity=0.561  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00033  Score=51.07  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +.|+|+|+|||||||....|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.82  E-value=0.00029  Score=51.81  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3489999999999999999874

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=8e-05  Score=54.13  Aligned_cols=21  Identities=24%  Similarity=0.556  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |+|+||+|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999854

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.00048  Score=49.48  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=20.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ...-|+++|.||||||||.+++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00023  Score=51.75  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=19.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..-|+++|.+||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999998854

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.78  E-value=0.00031  Score=49.97  Aligned_cols=22  Identities=41%  Similarity=0.489  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .+|+++|.+||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.73  E-value=0.00038  Score=49.94  Aligned_cols=20  Identities=30%  Similarity=0.293  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 026548           31 VVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~   50 (237)
                      |+|.|.+||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998753

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00041  Score=52.69  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      +|+|+|+.|||||||++.+.+--
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            69999999999999999988754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.70  E-value=0.00045  Score=49.13  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |+|.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999988654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00042  Score=49.12  Aligned_cols=20  Identities=35%  Similarity=0.494  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 026548           31 VVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~   50 (237)
                      ++|+|++||||||+.+.|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66799999999999999865

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.67  E-value=0.00045  Score=48.99  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.66  E-value=0.00046  Score=50.91  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++++|+.|||||||++.+.+.-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            58899999999999999998755

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.65  E-value=0.0012  Score=46.58  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..-|++-|+-|||||||++.+...
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHhh
Confidence            345889999999999999998754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.0005  Score=49.98  Aligned_cols=21  Identities=33%  Similarity=0.608  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |+|+|++||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.0008  Score=49.06  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.0

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..-|+|+|+|||||||+...|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44699999999999999998864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.59  E-value=0.00055  Score=49.44  Aligned_cols=21  Identities=43%  Similarity=0.612  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999998754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.54  E-value=0.00083  Score=47.69  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=19.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..-|.++|.+||||||+.+.|..
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999988764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.54  E-value=0.00065  Score=51.63  Aligned_cols=23  Identities=30%  Similarity=0.328  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+-.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            78999999999999999987654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.54  E-value=0.00062  Score=52.09  Aligned_cols=23  Identities=39%  Similarity=0.460  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.|.+-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            69999999999999999887654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.00065  Score=51.18  Aligned_cols=23  Identities=39%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++++|+.|||||||++.+.+..
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999887754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.53  E-value=0.00061  Score=49.70  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -|+|+|+|||||||+...|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999998864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.52  E-value=0.00067  Score=48.10  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            556699999999999998754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.49  E-value=0.00063  Score=51.98  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..-|++.|+||+|||||.++|...
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999998753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00071  Score=51.67  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            68999999999999999887754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.49  E-value=0.00088  Score=48.43  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=20.8

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..+=|+|-|++|||||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456699999999999999999864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.47  E-value=0.0007  Score=50.93  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++++|+.|||||||++.+.+..
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            58999999999999999877754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.45  E-value=0.00078  Score=50.95  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 026548           31 VVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      ++++|+.|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            6789999999999999998865

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.00077  Score=52.38  Aligned_cols=23  Identities=17%  Similarity=0.328  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++|+|+.|||||||++.+.+.-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.0008  Score=49.03  Aligned_cols=20  Identities=40%  Similarity=0.640  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 026548           31 VVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~   50 (237)
                      |+|+|++||||+||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.41  E-value=0.00085  Score=50.75  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            48999999999999999988765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.41  E-value=0.00085  Score=50.51  Aligned_cols=24  Identities=13%  Similarity=0.380  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ...+++.|+||+||||+++.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988753

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.36  E-value=0.00097  Score=50.11  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .++++.||||+||||+++.|..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            3799999999999999998864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.35  E-value=0.00093  Score=47.60  Aligned_cols=20  Identities=10%  Similarity=0.370  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHh
Q 026548           30 KVVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~   49 (237)
                      .|+++|.+||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            48899999999999999885

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.33  E-value=0.00093  Score=50.65  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998765

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.33  E-value=0.00092  Score=50.21  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      -++++|+.|||||||++.+.+-..
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            489999999999999999998653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.32  E-value=0.001  Score=50.35  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++++|+.|||||||++.+.+..
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999988765

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.001  Score=49.15  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |+|+||+||||+||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.001  Score=50.36  Aligned_cols=23  Identities=35%  Similarity=0.354  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            48999999999999999988764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.00073  Score=50.97  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -++++|+.|||||||++.+.+.
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4899999999999999999874

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.25  E-value=0.0014  Score=49.52  Aligned_cols=24  Identities=21%  Similarity=0.191  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      -++++|+.|||||||++.+.+...
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999987753

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.17  E-value=0.0013  Score=47.25  Aligned_cols=21  Identities=38%  Similarity=0.692  Sum_probs=17.2

Q ss_pred             eE-EEEcCCCCcHHHHHHHHhc
Q 026548           30 KV-VVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i-~v~G~~~sGKSsli~~l~~   50 (237)
                      || +|.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            45 4579999999999998853

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.15  E-value=0.00083  Score=51.39  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      +++|+|+.|||||||++.+.+-.
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHhcC
Confidence            78999999999999998776543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.14  E-value=0.0014  Score=51.86  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .+|+|.|++|||||||+++|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999853

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.11  E-value=0.0014  Score=50.05  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++++|+.|||||||++.+.+..
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            37999999999999999998875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.09  E-value=0.0015  Score=50.02  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++|+|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            58999999999999999998754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0022  Score=48.43  Aligned_cols=25  Identities=12%  Similarity=0.243  Sum_probs=21.5

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ....+++.|+||+||||+++.+...
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.03  E-value=0.00093  Score=50.59  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            68999999999999999998865

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.002  Score=47.04  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -+++++|+||+|||+++..|..+-
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            479999999999999998876543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.98  E-value=0.0023  Score=48.62  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ...|++.|+||+|||+|++++..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45799999999999999999875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.98  E-value=0.002  Score=48.12  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .++++.|++|+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            36999999999999999988653

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0022  Score=47.26  Aligned_cols=23  Identities=30%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ++-|+|-|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998853

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.89  E-value=0.0025  Score=48.26  Aligned_cols=25  Identities=16%  Similarity=0.267  Sum_probs=21.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..-.++|.|++|+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.87  E-value=0.0023  Score=47.27  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=19.7

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .+.|+|-|++||||||+...|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999988753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0026  Score=48.84  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -+++++|+||+|||++++.|...-
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            479999999999999998876543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.66  E-value=0.0024  Score=48.67  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -+++.|+||+|||++++.+...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3456699999999999998754

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0033  Score=46.26  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      =|+|.|+|||||+|+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367779999999999988754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.58  E-value=0.003  Score=47.84  Aligned_cols=21  Identities=29%  Similarity=0.309  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999998864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.57  E-value=0.0036  Score=47.48  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -.|++.|+||+|||+|++++..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3599999999999999999985

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.56  E-value=0.0031  Score=49.48  Aligned_cols=23  Identities=35%  Similarity=0.615  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -.|+++||||+|||.|.+++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            46899999999999999998753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.0034  Score=46.58  Aligned_cols=22  Identities=14%  Similarity=0.342  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .++++.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            3699999999999999987754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.0027  Score=47.79  Aligned_cols=24  Identities=13%  Similarity=0.243  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..++++.|++|+||||+++.+...
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            346999999999999999988653

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.53  E-value=0.0034  Score=46.74  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ++++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            5899999999999999988753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.46  E-value=0.0049  Score=44.44  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ++=|+|.|.+||||||+.+.|...
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            456899999999999999988643

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.0037  Score=46.34  Aligned_cols=22  Identities=14%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ++++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            6899999999999999998753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.37  E-value=0.0038  Score=47.62  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -.|++.|+||+|||++++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            46999999999999999988764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.30  E-value=0.005  Score=46.92  Aligned_cols=22  Identities=18%  Similarity=0.359  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -.+++.|+||+|||++++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            4699999999999999999874

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.25  E-value=0.0047  Score=45.50  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..-|.+.|.||||||||.+.|..
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44699999999999999998864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.18  E-value=0.0055  Score=44.26  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .+-|+|-|..||||||+++.|..
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.04  E-value=0.0062  Score=44.35  Aligned_cols=21  Identities=14%  Similarity=0.411  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.00  E-value=0.0047  Score=47.28  Aligned_cols=25  Identities=16%  Similarity=0.230  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      .-.|++.|++|+|||+|++++...-
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3469999999999999999987543

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.0091  Score=46.67  Aligned_cols=28  Identities=21%  Similarity=0.303  Sum_probs=22.3

Q ss_pred             CCCceeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           23 DKIDYVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        23 ~~~~~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .....++=|+|.|++|||||||.+.|..
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            3344578899999999999999888753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.70  E-value=0.012  Score=45.35  Aligned_cols=26  Identities=15%  Similarity=0.074  Sum_probs=20.9

Q ss_pred             CCceeeeEEEEcCCCCcHHHHHHHHh
Q 026548           24 KIDYVFKVVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        24 ~~~~~~~i~v~G~~~sGKSsli~~l~   49 (237)
                      .....+=|+|-|.+|||||||...|.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34456789999999999999987663

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.0095  Score=43.65  Aligned_cols=25  Identities=24%  Similarity=0.422  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      +=|+|.|..||||||+.+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            3488999999999999998865443

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.0096  Score=43.54  Aligned_cols=20  Identities=20%  Similarity=0.315  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 026548           31 VVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~   50 (237)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.51  E-value=0.0044  Score=48.97  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +|+++|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            699999999999999998853

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.39  E-value=0.014  Score=42.56  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      +=|+|.|..||||||+.+.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            45899999999999999988643

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.012  Score=42.61  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      =+.|.|+||+|||+|+..|....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999998887543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.0024  Score=46.03  Aligned_cols=19  Identities=26%  Similarity=0.525  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 026548           31 VVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~   49 (237)
                      .+|+|+.|||||||+.+|.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3567999999999999874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.28  E-value=0.01  Score=47.50  Aligned_cols=22  Identities=14%  Similarity=0.154  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -.+++.||||+|||+|..++.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.25  E-value=0.0088  Score=48.33  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=18.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHh
Q 026548           28 VFKVVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~   49 (237)
                      .-+++++|+||+|||+++..|.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHH
Confidence            3468999999999999996554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.20  E-value=0.016  Score=47.55  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .-+|+++||+|||||-|.++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999998853

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.09  E-value=0.012  Score=43.29  Aligned_cols=22  Identities=18%  Similarity=0.446  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 026548           31 VVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      +.+.|++|+|||.|++++....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            8999999999999999987654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.02  E-value=0.017  Score=41.23  Aligned_cols=25  Identities=32%  Similarity=0.522  Sum_probs=21.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      .-|++.|++|+||||+.-.|..+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999999887664

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.016  Score=42.47  Aligned_cols=20  Identities=25%  Similarity=0.385  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 026548           31 VVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~   50 (237)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77779999999998877654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.83  E-value=0.02  Score=40.78  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=21.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      .-|++.|++|+||||+.-.|..+..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999999987654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.72  E-value=0.018  Score=42.56  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -+.|.|+||+|||+|+..+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999998886543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.60  E-value=0.018  Score=42.82  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      -++|.|+||+|||+|.-.+....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999998876543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.59  E-value=0.025  Score=44.59  Aligned_cols=25  Identities=16%  Similarity=0.218  Sum_probs=22.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..++|+|=|..|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            5789999999999999999988764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.51  E-value=0.02  Score=42.48  Aligned_cols=23  Identities=30%  Similarity=0.595  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      --++|.|+||+|||+|+..+...
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            35889999999999999888655

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.50  E-value=0.012  Score=43.63  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998765

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.45  E-value=0.011  Score=45.57  Aligned_cols=18  Identities=28%  Similarity=0.612  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 026548           31 VVVIGDSAVGKSQILSRF   48 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l   48 (237)
                      -+++|+.||||||+++++
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            368899999999999987

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.37  E-value=0.015  Score=42.34  Aligned_cols=24  Identities=25%  Similarity=0.176  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-.+++.|++++|||.|+.+|+.-
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHH
Confidence            347899999999999999987643

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.32  E-value=0.024  Score=44.57  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            568899999999999999998864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.24  E-value=0.0094  Score=46.05  Aligned_cols=20  Identities=30%  Similarity=0.547  Sum_probs=15.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 026548           31 VVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~   50 (237)
                      |+|.|++|||||||.++|..
T Consensus         7 IgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEESCC---CCTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999998743

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.16  E-value=0.027  Score=39.84  Aligned_cols=26  Identities=31%  Similarity=0.446  Sum_probs=22.3

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcCCC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKNEF   53 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~~~   53 (237)
                      ..-|++.|++|+||||+.-.|..+..
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            35699999999999999998887764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.06  E-value=0.023  Score=43.49  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-|+|+|..|.|||||...+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45889999999999999988653

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.98  E-value=0.026  Score=41.60  Aligned_cols=22  Identities=27%  Similarity=0.259  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -++|.|++|+|||+|+..+...
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999888643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.93  E-value=0.024  Score=45.55  Aligned_cols=19  Identities=26%  Similarity=0.576  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 026548           31 VVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~   49 (237)
                      -+|+|+.|||||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3578999999999999973

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.028  Score=41.65  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            588999999999999998864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.85  E-value=0.023  Score=44.74  Aligned_cols=25  Identities=20%  Similarity=0.394  Sum_probs=22.2

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ..++|+|=|.-|+||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999998754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=92.82  E-value=0.03  Score=43.87  Aligned_cols=21  Identities=24%  Similarity=0.512  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      ++++|+||+|||.|.++|...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445799999999999998753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=92.63  E-value=0.031  Score=45.24  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      -|+|.|+.||||||.+..++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            3999999999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.59  E-value=0.034  Score=41.43  Aligned_cols=20  Identities=30%  Similarity=0.451  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 026548           31 VVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~   50 (237)
                      +++.|++|+||||+++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999988753

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.39  E-value=0.039  Score=40.23  Aligned_cols=20  Identities=5%  Similarity=0.343  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 026548           31 VVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~   50 (237)
                      +++.|++|+||||+++.+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999997654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.038  Score=40.93  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      --+.|.|+||+|||+|...+...
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999888753

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.14  E-value=0.037  Score=44.83  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhcC
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      .-+++|+|.+|+|||+++..++..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHH
Confidence            457999999999999998776543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.04  E-value=0.042  Score=40.17  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -+.|.|++|+|||+|+..+..
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            478899999999999876543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.03  E-value=0.052  Score=42.29  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -.++++|++|+|||.|.+.|..
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHh
Confidence            3688999999999999998754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.92  E-value=0.043  Score=40.19  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      =|++-|..||||||+++.|..
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999988764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=91.64  E-value=0.054  Score=43.15  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .-+++++||+|+|||-|.++|..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            45799999999999999998853

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.60  E-value=0.032  Score=42.71  Aligned_cols=15  Identities=20%  Similarity=0.620  Sum_probs=13.1

Q ss_pred             EEEEcCCCCcHHHHH
Q 026548           31 VVVIGDSAVGKSQIL   45 (237)
Q Consensus        31 i~v~G~~~sGKSsli   45 (237)
                      ++|+|++||||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            688999999999754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.43  E-value=0.055  Score=41.16  Aligned_cols=23  Identities=17%  Similarity=0.328  Sum_probs=19.9

Q ss_pred             eeeEEEEcCCCCcHHHHHHHHhc
Q 026548           28 VFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        28 ~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .--+.+.|++++|||+|++.+..
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHH
Confidence            44688999999999999998764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.27  E-value=0.044  Score=42.33  Aligned_cols=15  Identities=20%  Similarity=0.674  Sum_probs=13.3

Q ss_pred             EEEEcCCCCcHHHHH
Q 026548           31 VVVIGDSAVGKSQIL   45 (237)
Q Consensus        31 i~v~G~~~sGKSsli   45 (237)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            889999999999765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.25  E-value=0.057  Score=39.94  Aligned_cols=21  Identities=14%  Similarity=0.154  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998854

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=91.20  E-value=0.059  Score=40.77  Aligned_cols=20  Identities=25%  Similarity=0.406  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 026548           31 VVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~   50 (237)
                      ++|.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67899999999999887753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=90.36  E-value=0.075  Score=39.99  Aligned_cols=19  Identities=16%  Similarity=0.300  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 026548           31 VVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~   49 (237)
                      ++|.|++|+|||+|+-.|.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6689999999999997764

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.97  E-value=0.57  Score=32.83  Aligned_cols=100  Identities=13%  Similarity=0.189  Sum_probs=54.9

Q ss_pred             eeeeEEEEcC-CCCcHHHHHHHHhcCCCcCCCCCCcceeEEEEEEEECCEEEEEEEEeCCCcchh---------------
Q 026548           27 YVFKVVVIGD-SAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERY---------------   90 (237)
Q Consensus        27 ~~~~i~v~G~-~~sGKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------------   90 (237)
                      ..+||.|+|. .+.|-+ |+..|..+......                 ..+.+.++|.+.....               
T Consensus        23 ~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~~-----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNH-LLFKLASGEVFGQD-----------------QPIALKLLGSERSFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             CCEEEEEETTTSHHHHH-HHHHHHHTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTCTT
T ss_pred             CCcEEEEECCCcHHHHH-HHHHHHcCcccCCC-----------------ceEEEEEecCccccchhcchhhhhccccccc
Confidence            4789999997 566654 55566554432111                 1234667776652211               


Q ss_pred             ------chhhHhhhcCCcEEEEEEECCCh--hhHH--------HHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548           91 ------RAVTSAYYRGALGAVVVYDITKR--QSFD--------HVARWVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus        91 ------~~~~~~~~~~~d~~ilv~d~~~~--~s~~--------~~~~~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                            ..-....+.++|++|++-.....  ++..        -++.+...+..+...+.-++|+.|-.|
T Consensus        85 ~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          85 LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                  01112346788988888765431  1221        234455556666544566777777766

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=89.78  E-value=0.098  Score=40.10  Aligned_cols=24  Identities=13%  Similarity=0.329  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhcCC
Q 026548           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      =|++|+|++|+|||+|+..+....
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHHH
Confidence            389999999999999998887543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=89.31  E-value=0.1  Score=41.32  Aligned_cols=18  Identities=22%  Similarity=0.473  Sum_probs=15.4

Q ss_pred             eEEEEcCCCCcHHHHHHH
Q 026548           30 KVVVIGDSAVGKSQILSR   47 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~   47 (237)
                      -++|.|+||+|||+++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            478899999999998754

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.15  E-value=1.9  Score=30.81  Aligned_cols=76  Identities=13%  Similarity=0.127  Sum_probs=48.3

Q ss_pred             EEEEEEeCCCcchhchhhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcCCCHHH
Q 026548           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRII-LIGNKSDLVDMRAVSAED  155 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~~~~~~~~~  155 (237)
                      +.+.++|+++....  .....+..+|.++++...+ ..+.....+....+..   .++|++ ||+|+.+... .....+.
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~-~~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSD-RDIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCT-TCCCHHH
T ss_pred             CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhccccccc-chhhhHH
Confidence            45789999875433  3444567799999988764 5555666555555544   467765 8999998653 2334444


Q ss_pred             HHHH
Q 026548          156 AVEF  159 (237)
Q Consensus       156 ~~~~  159 (237)
                      ..++
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4333

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.22  E-value=2  Score=28.71  Aligned_cols=23  Identities=22%  Similarity=0.457  Sum_probs=17.5

Q ss_pred             eEEEEcC-CCCcHHHHHHHHhcCCC
Q 026548           30 KVVVIGD-SAVGKSQILSRFTKNEF   53 (237)
Q Consensus        30 ~i~v~G~-~~sGKSsli~~l~~~~~   53 (237)
                      ||.|+|. ..+| +++...|.....
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~   25 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPL   25 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCc
Confidence            8999995 8999 566777776554

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=87.12  E-value=0.19  Score=38.91  Aligned_cols=21  Identities=19%  Similarity=0.523  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHhc
Q 026548           30 KVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~   50 (237)
                      .++++|++|+|||.+.+.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            577889999999999987753

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.32  E-value=0.24  Score=32.51  Aligned_cols=24  Identities=17%  Similarity=0.194  Sum_probs=21.3

Q ss_pred             eeeeEEEEcCCCCcHHHHHHHHhc
Q 026548           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        27 ~~~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      +-+.|.+-|..|+|||||.++|..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            368899999999999999999854

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=85.85  E-value=0.23  Score=37.42  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcCC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKNE   52 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~~   52 (237)
                      =+.|.|++++|||+|+-.+....
T Consensus        56 itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHHH
Confidence            46789999999999997766543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.19  E-value=0.28  Score=37.23  Aligned_cols=22  Identities=27%  Similarity=0.575  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |++++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999998887654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.02  E-value=0.26  Score=36.72  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHhc
Q 026548           29 FKVVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        29 ~~i~v~G~~~sGKSsli~~l~~   50 (237)
                      ..|+|.|++|+||+.+.+.+..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3589999999999999988864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=84.00  E-value=6.1  Score=28.74  Aligned_cols=88  Identities=14%  Similarity=0.115  Sum_probs=52.5

Q ss_pred             EEEEEEeCCCcchhch-hhHhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcE-EEEEeCCCCCCCcCCCH
Q 026548           77 IKAQIWDTAGQERYRA-VTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRI-ILIGNKSDLVDMRAVSA  153 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~-vvv~nK~D~~~~~~~~~  153 (237)
                      +.+.++|+|+.-.... ........+|.++++.+. +..++.........+..... .+.++ -++.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            4577999986443322 222333567888777765 55666655555555554433 33333 37889987643    24


Q ss_pred             HHHHHHHHHcCCeEEE
Q 026548          154 EDAVEFAEDQGLFFSE  169 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~  169 (237)
                      +...++++..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            5566777778876544

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.79  E-value=6.6  Score=28.96  Aligned_cols=88  Identities=15%  Similarity=0.122  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCcchhchhhHh-hhcCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcE-EEEEeCCCCCCCcCCCH
Q 026548           77 IKAQIWDTAGQERYRAVTSA-YYRGALGAVVVYDITKRQSFDHVARWVEELRAHAD-SSIRI-ILIGNKSDLVDMRAVSA  153 (237)
Q Consensus        77 ~~~~l~Dt~G~~~~~~~~~~-~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~-vvv~nK~D~~~~~~~~~  153 (237)
                      +.+.++|+|+.......... ....+|.++++.. .+..++..+...+..+..... .+.++ .+|.|+.+...    ..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----ED  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hH
Confidence            45679998765433222222 2345676666654 445555555444444433222 34554 37889886432    23


Q ss_pred             HHHHHHHHHcCCeEEE
Q 026548          154 EDAVEFAEDQGLFFSE  169 (237)
Q Consensus       154 ~~~~~~~~~~~~~~~~  169 (237)
                      +...++.+.++.+++.
T Consensus       194 ~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         194 ELIIALANKLGTQMIH  209 (289)
T ss_dssp             HHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHcCCeEEE
Confidence            3455667777776554

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.95  E-value=0.37  Score=35.56  Aligned_cols=19  Identities=21%  Similarity=0.422  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 026548           31 VVVIGDSAVGKSQILSRFT   49 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~   49 (237)
                      ++|.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6899999999999999864

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=82.37  E-value=0.39  Score=35.15  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 026548           31 VVVIGDSAVGKSQILSRFTK   50 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~   50 (237)
                      ++|.|+..+||||+++.+.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            78999999999999997643

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.20  E-value=0.33  Score=34.27  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 026548           31 VVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        31 i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |+|+|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998744

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.85  E-value=2.4  Score=28.54  Aligned_cols=49  Identities=14%  Similarity=0.232  Sum_probs=28.3

Q ss_pred             hhhcCCcEEEEEEECCChh----------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 026548           96 AYYRGALGAVVVYDITKRQ----------SFDHVARWVEELRAHADSSIRIILIGNKSD  144 (237)
Q Consensus        96 ~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D  144 (237)
                      ..++++|++|+........          ....++.+...+..+...+.-++++.|-+|
T Consensus        76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD  134 (154)
T d1y7ta1          76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN  134 (154)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence            4568899888877654311          122344555556665533455566677666

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=80.56  E-value=0.5  Score=35.12  Aligned_cols=19  Identities=26%  Similarity=0.546  Sum_probs=16.3

Q ss_pred             eEEEEcCCCCcHHHHHHHH
Q 026548           30 KVVVIGDSAVGKSQILSRF   48 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l   48 (237)
                      +|+|.|..|+||||+.--|
T Consensus         3 ~Iai~gKGGvGKTT~a~nL   21 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNL   21 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHH
Confidence            6889999999999998544

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.05  E-value=0.43  Score=36.32  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHhcC
Q 026548           30 KVVVIGDSAVGKSQILSRFTKN   51 (237)
Q Consensus        30 ~i~v~G~~~sGKSsli~~l~~~   51 (237)
                      |+.++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7899999999999998776543