Citrus Sinensis ID: 026642

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MSSIKTFSLHLHSNYDRPVLPDPNKSSFLSSPNKQKHHTLSFQQTQKQKFHSLFITNLSQSHIAKIPRSSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSLF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEccccccccccccccccccccccccccEEcccccccHEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mssiktfslhlhsnydrpvlpdpnkssflsspnkqkhhtlsfqqtQKQKFHSLFITNLSqshiakiprsslspenKIMKVLKEKAVIFLAGSVIFLgsfgsnlrpsvalpgkmrasENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQgnmrrgrnKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSLF
Flexible Loop (DISEMBL)
mssiktfslhlhsnydrpvlPDPNKSSFLSSPNKQKHHTLSFQQTQKQKFHSLFITNLSQshiakiprsslspENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALMGKSEVEEMFEKllekeprnvealkvvmqgnmrrgrnkEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSLF
Low Complexity Region (SEG)
MSSIKTFSLHLHSNYDRPVLPDPNKSSFLSSPNKQKHHTLSFQQTQKQKFHSLFITNLSQSHIAKIPRSSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSLF
Disordered region (IsUnstruct)
*************************************************FHSLFITNLSQ*HI************KIMKVLKEKAVIFLAGSVIFLGSFGSNL************************************************VV***********EALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI****
Disordered Region (DISOPRED)
*******************************************************************************VLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKE********SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQ****F
Disordered Region (DISEMBL)
MSSIKTFSLHLHSNYDRPVLPDPNKSS*******************KQKFHSLFITNLSQSHIAKIPRSSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSLF
Disordered Region (DISPRO)
**SIKTFSLHLHSNYDRPVLPDPNKSSFLSSPNKQKHHTLSFQQTQKQKFHSLFITNLSQSHIAKIPRSSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL*****F
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSIKTFSLHLHSNYDRPVLPDPNKSSFLSSPNKQKHHTLSFQQTQKQKFHSLFITNLSQSHIAKIPRSSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSLF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
224081264	302	predicted protein [Populus trichocarpa]	0.744	0.579	0.598	4e-48
225438525	345	PREDICTED: uncharacterized protein LOC10	0.668	0.455	0.598	3e-47
224093902	345	predicted protein [Populus trichocarpa]	0.919	0.626	0.473	4e-46
255578809	352	conserved hypothetical protein [Ricinus	0.923	0.616	0.475	4e-45
296082522	252	unnamed protein product [Vitis vinifera]	0.493	0.460	0.683	1e-37
449515817	362	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.829	0.538	0.432	4e-35
449448428	362	PREDICTED: uncharacterized protein LOC10	0.829	0.538	0.432	4e-35
297802046	340	chloroplast lumen common family protein	0.663	0.458	0.485	2e-34
18420460	341	tetratricopeptide repeat domain-containi	0.604	0.416	0.506	8e-34
5042163	290	putative protein [Arabidopsis thaliana]	0.604	0.489	0.506	9e-34

>gi|224081264|ref|XP_002306358.1| predicted protein [Populus trichocarpa] gi|222855807|gb|EEE93354.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 106/177 (59%), Positives = 132/177 (74%), Gaps = 2/177 (1%)

Query: 61  SHIAKIPRSSLSPEN-KIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRA-SEN 118
           S   +I  SSLS  N K    L EK ++ L G+ IF+GSFG N R S+ALP +    S N
Sbjct: 10  SPFPQILTSSLSKTNYKFTNFLSEKVLVSLVGAFIFIGSFGLNTRQSLALPAQTTGPSVN 69

Query: 119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP 178
           L+EKRDA M KSE EEMFEK+LE EPRNVEALKVV+ G MRRG+ KEA+++V+RLIDIEP
Sbjct: 70  LEEKRDAHMEKSEDEEMFEKVLEMEPRNVEALKVVVHGKMRRGQTKEAVKYVERLIDIEP 129

Query: 179 NEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSLF 235
            +VEW+LL+ALCYE+MG+LS AK LFK+IL ERPLLLRALH L   +  +L+  ++F
Sbjct: 130 EQVEWRLLEALCYEMMGQLSKAKTLFKEILIERPLLLRALHGLALVMHKSLEGPAVF 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438525|ref|XP_002275767.1| PREDICTED: uncharacterized protein LOC100254208 [Vitis vinifera]

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 100/167 (59%), Positives = 128/167 (76%), Gaps = 10/167 (5%)

Query: 64  AKIPRSSLS-------PENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKM-RA 115
           ++IP S+ S       P+ +I K   EK V+FL GSVIF+   G+  RP++ALP  M R 
Sbjct: 46  SRIPTSNFSRIANHLIPKEEIFKFFSEKVVVFLVGSVIFMWCLGA--RPAMALPAHMGRY 103

Query: 116 SENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID 175
           S N+++KRDA   +SE ++M+ K+LEK+PRNVEALKVV+ G MRRG+ KEA+E+V+RLID
Sbjct: 104 SSNVEQKRDAQDSESEHDDMYAKILEKDPRNVEALKVVLYGKMRRGKTKEAVEYVERLID 163

Query: 176 IEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222
           IEP+EVEW+LLQAL YE+MG LS AKRLFK+ILKERPLLLRALH L 
Sbjct: 164 IEPDEVEWRLLQALSYEIMGHLSKAKRLFKEILKERPLLLRALHGLA 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093902|ref|XP_002310040.1| predicted protein [Populus trichocarpa] gi|222852943|gb|EEE90490.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/243 (47%), Positives = 150/243 (61%), Gaps = 27/243 (11%)

Query: 1   MSSIKTFSLHLHSNYDRPVLPDPNKSSFLSSPNKQKHHTL-----SFQQTQKQKFHSLFI 55
           M SIKTFS         P  P  +  +  SS N     +L     S         H L I
Sbjct: 1   MGSIKTFS---------PCSPPSHFQNLKSSKNCNSSTSLKPLLCSMNPLNIHSRHKLHI 51

Query: 56  TN--LSQSHIAKIPRSSLSPENK-IMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGK 112
           ++   S+S   +IP SS+S +N      L EK ++ L G+ IF+GSFG N R S+ALP +
Sbjct: 52  SSNICSKSPFPQIPTSSISKKNNNFTSFLSEKVLVSLVGAFIFIGSFGLNTRQSLALPAQ 111

Query: 113 MRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKR 172
                      +A M KSE EEM+EK+LEKEPRNVEALKVV+ G MRRG+ KEA+++V R
Sbjct: 112 T----------NAQMEKSEDEEMYEKVLEKEPRNVEALKVVLHGKMRRGQTKEAVKYVGR 161

Query: 173 LIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ 232
           LI+IEP EVEW+LL+ALCYE+MG+L+ AKRLF +IL+ERPLLLRALH L   +   L+  
Sbjct: 162 LIEIEPEEVEWRLLEALCYEMMGQLNKAKRLFNEILEERPLLLRALHGLALVMHKNLEGP 221

Query: 233 SLF 235
           ++F
Sbjct: 222 AVF 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578809|ref|XP_002530261.1| conserved hypothetical protein [Ricinus communis] gi|223530227|gb|EEF32131.1| conserved hypothetical protein [Ricinus communis]

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/229 (47%), Positives = 149/229 (65%), Gaps = 12/229 (5%)

Query: 14  NYDRPVLPDP------NKSSFLSSPN-KQKHHTLSFQQTQKQKFHSLFITNLSQSHIAKI 66
           NY  P L  P       ++  +++P+ +Q    L F +T K    S   + LS S I  I
Sbjct: 8   NYHNPKLTSPYLSITPKRNLSITNPHYRQSLLKLPFHRTTKLLRIS---SKLSLSPIPHI 64

Query: 67  PRSSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDAL 126
           P S+ S       VL +K +I + G+ IF+GSFG N RPS+ALP +   S   +E RD  
Sbjct: 65  PTSNSSKRKGFANVLCDKVLISVLGAFIFMGSFGFNARPSLALPAQ--ESAYTEEMRDTQ 122

Query: 127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLL 186
           M  +E EEM+EK LEKEPRN+EALKVV+ G +R+G+ KEAL++V+RLI  EP+EVEW+LL
Sbjct: 123 MKNNEDEEMYEKFLEKEPRNMEALKVVVYGKIRKGKTKEALKYVERLIKTEPDEVEWRLL 182

Query: 187 QALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSLF 235
           +ALC+E+MG+LS AKRLFK+IL+ERPLLLRALH L   +    +  ++F
Sbjct: 183 EALCWEMMGQLSKAKRLFKEILEERPLLLRALHGLAMVMHKNFEGPAVF 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082522|emb|CBI21527.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/117 (68%), Positives = 99/117 (84%), Gaps = 1/117 (0%)

Query: 107 VALPGKM-RASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKE 165
           +ALP  M R S N+++KRDA   +SE ++M+ K+LEK+PRNVEALKVV+ G MRRG+ KE
Sbjct: 1   MALPAHMGRYSSNVEQKRDAQDSESEHDDMYAKILEKDPRNVEALKVVLYGKMRRGKTKE 60

Query: 166 ALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222
           A+E+V+RLIDIEP+EVEW+LLQAL YE+MG LS AKRLFK+ILKERPLLLRALH L 
Sbjct: 61  AVEYVERLIDIEPDEVEWRLLQALSYEIMGHLSKAKRLFKEILKERPLLLRALHGLA 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515817|ref|XP_004164944.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101230878 [Cucumis sativus]

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/208 (43%), Positives = 131/208 (62%), Gaps = 13/208 (6%)

Query: 35  QKHHTLSFQQ---TQKQKFHSLF----ITNLSQSHIAKIPRSSLSPENKIMKVLKEKAVI 87
           QK++ LS Q    +  + FHS       +NLS+S I    R   SP+ KI K   EK V 
Sbjct: 40  QKNYKLSSQSLFCSHAKIFHSPIHNTPFSNLSESDI----RRFNSPQIKISKYFIEKFVG 95

Query: 88  FLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNV 147
           FL GS IF+G F  N+R   ALP +      +  ++  +  +   E M+E++LE +P NV
Sbjct: 96  FLVGSFIFMGCF--NVRYVRALPAQTSNKNPILAEKAQVPEEDSEEVMWERILEHDPSNV 153

Query: 148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207
           + LK V+ G MR G+ + A+++VKRLID+EP+EVEW++L ALCYE++G+L TAKRLF +I
Sbjct: 154 DTLKAVLYGKMRSGKTENAVKYVKRLIDLEPDEVEWRILLALCYEILGELGTAKRLFMEI 213

Query: 208 LKERPLLLRALHDLGRYVSMTLQIQSLF 235
           LK++PLL+RALH L   +    + +S+F
Sbjct: 214 LKQKPLLVRALHGLALVMHKNNEGESVF 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448428|ref|XP_004141968.1| PREDICTED: uncharacterized protein LOC101208394 [Cucumis sativus]

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/208 (43%), Positives = 131/208 (62%), Gaps = 13/208 (6%)

Query: 35  QKHHTLSFQQ---TQKQKFHSLF----ITNLSQSHIAKIPRSSLSPENKIMKVLKEKAVI 87
           QK++ LS Q    +  + FHS       +NLS+S I    R   SP+ KI K   EK V 
Sbjct: 40  QKNYKLSSQSLFCSHAKIFHSPIHNTPFSNLSESDI----RRFNSPQIKISKYFIEKFVG 95

Query: 88  FLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNV 147
           FL GS IF+G F  N+R   ALP +      +  ++  +  +   E M+E++LE +P NV
Sbjct: 96  FLVGSFIFMGCF--NVRYVRALPAQTSNKNPILAEKAQVPEEDSEEVMWERILEHDPSNV 153

Query: 148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI 207
           + LK V+ G MR G+ + A+++VKRLID+EP+EVEW++L ALCYE++G+L TAKRLF +I
Sbjct: 154 DTLKAVLYGKMRSGKTENAVKYVKRLIDLEPDEVEWRILLALCYEILGELGTAKRLFMEI 213

Query: 208 LKERPLLLRALHDLGRYVSMTLQIQSLF 235
           LK++PLL+RALH L   +    + +S+F
Sbjct: 214 LKQKPLLVRALHGLALVMHKNNEGESVF 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802046|ref|XP_002868907.1| chloroplast lumen common family protein [Arabidopsis lyrata subsp. lyrata] gi|297314743|gb|EFH45166.1| chloroplast lumen common family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 116/169 (68%), Gaps = 13/169 (7%)

Query: 54  FITNLSQSHIAKIPRSSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKM 113
           F  + SQ  + +   S LS ++  +++L  KA I L GS +FLG   S  +P++ALP   
Sbjct: 52  FAPSFSQLPLIRSSTSLLSSKD-FVQILARKAAILLVGSFVFLGFCSS--KPALALPTAT 108

Query: 114 RASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRL 173
             S+           + E E+MFEKLLE EP N+EA+K V+   MRRG+N++A+++V++L
Sbjct: 109 VVSQ----------AELEDEKMFEKLLESEPENMEAMKAVVYKKMRRGKNEDAVKYVEKL 158

Query: 174 IDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222
           + +EP+EVEWKLL+ALCYE MG+LS AKRL+KDILKE+PLL+RALH L 
Sbjct: 159 MKLEPHEVEWKLLEALCYETMGQLSKAKRLYKDILKEQPLLIRALHGLA 207

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420460|ref|NP_568061.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|15215656|gb|AAK91373.1| AT4g39470/F23K16_100 [Arabidopsis thaliana] gi|28416459|gb|AAO42760.1| At4g39470/F23K16_100 [Arabidopsis thaliana] gi|332661676|gb|AEE87076.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 108/154 (70%), Gaps = 12/154 (7%)

Query: 69  SSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALMG 128
           +SL      +++L  KA I L GS +FLG   S  +P++ALP     S+           
Sbjct: 67  TSLLSSKDFVQMLARKAAILLVGSFVFLGFCSS--KPALALPTATVVSQ----------A 114

Query: 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQA 188
           + E E+MFEKLLE EP N+EA+K V+   MRRG+N++A+++V++L+ +EP+EVEWKLL+A
Sbjct: 115 ELEDEKMFEKLLENEPENMEAMKAVVYKKMRRGKNEDAVKYVEKLMKLEPHEVEWKLLEA 174

Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222
           LCYE MG+LS AKRL+KDILKE+PLL+RALH L 
Sbjct: 175 LCYETMGELSKAKRLYKDILKEQPLLIRALHGLA 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5042163|emb|CAB44682.1| putative protein [Arabidopsis thaliana] gi|7270931|emb|CAB80610.1| putative protein [Arabidopsis thaliana]

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 108/154 (70%), Gaps = 12/154 (7%)

Query: 69  SSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALMG 128
           +SL      +++L  KA I L GS +FLG   S  +P++ALP     S+           
Sbjct: 67  TSLLSSKDFVQMLARKAAILLVGSFVFLGFCSS--KPALALPTATVVSQ----------A 114

Query: 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQA 188
           + E E+MFEKLLE EP N+EA+K V+   MRRG+N++A+++V++L+ +EP+EVEWKLL+A
Sbjct: 115 ELEDEKMFEKLLENEPENMEAMKAVVYKKMRRGKNEDAVKYVEKLMKLEPHEVEWKLLEA 174

Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222
           LCYE MG+LS AKRL+KDILKE+PLL+RALH L 
Sbjct: 175 LCYETMGELSKAKRLYKDILKEQPLLIRALHGLA 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2122462	341	AT4G39470 [Arabidopsis thalian	0.629	0.434	0.5	4.6e-34
TAIR|locus:2049741	333	AT2G37400 "AT2G37400" [Arabido	0.634	0.447	0.346	2.6e-17
TAIR|locus:2095037	316	AT3G18420 [Arabidopsis thalian	0.642	0.477	0.309	3.8e-13
TAIR|locus:2084001	340	AT3G53560 "AT3G53560" [Arabido	0.778	0.538	0.298	1.4e-12
TAIR|locus:2181848	326	AT5G02590 "AT5G02590" [Arabido	0.672	0.484	0.280	6.5e-10
TAIR|locus:2074969	334	AT3G09490 "AT3G09490" [Arabido	0.455	0.320	0.327	3.8e-08

TAIR|locus:2122462 AT4G39470 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 80/160 (50%), Positives = 112/160 (70%)

Query:    69 SSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALMG 128
             +SL      +++L  KA I L GS +FLG F S+ +P++ALP     S+           
Sbjct:    67 TSLLSSKDFVQMLARKAAILLVGSFVFLG-FCSS-KPALALPTATVVSQ----------A 114

Query:   129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQA 188
             + E E+MFEKLLE EP N+EA+K V+   MRRG+N++A+++V++L+ +EP+EVEWKLL+A
Sbjct:   115 ELEDEKMFEKLLENEPENMEAMKAVVYKKMRRGKNEDAVKYVEKLMKLEPHEVEWKLLEA 174

Query:   189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT 228
             LCYE MG+LS AKRL+KDILKE+PLL+RALH L   +  T
Sbjct:   175 LCYETMGELSKAKRLYKDILKEQPLLIRALHGLAMVMHKT 214

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049741 AT2G37400 "AT2G37400" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.6e-17, P = 2.6e-17
 Identities = 54/156 (34%), Positives = 89/156 (57%)

Query:    69 SSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRAS---ENLKEKRDA 125
             SS S ++K+  +LK   V F A + +FL +    L+PS A+   + A+   E+LK+    
Sbjct:    53 SSKSQDSKL-SILKSTCVSFTAAAALFLVNL--QLKPSPAIAAPVAATPLMESLKQSNGN 109

Query:   126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKL 185
             +  + E E   E+ L   P +VEAL+ +M+  ++  +  EA+E + RLI++EP E EW +
Sbjct:   110 VSFEEE-ERSLEEYLASHPDDVEALRSLMEVRIKSRKLLEAIELIDRLIELEPEEKEWPM 168

Query:   186 LQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL 221
             L+A  +   G L +AK  F++IL + PL + A H L
Sbjct:   169 LKANIFSYSGDLESAKTGFEEILVKDPLRVEAYHGL 204

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2095037 AT3G18420 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 3.8e-13, P = 3.8e-13
 Identities = 48/155 (30%), Positives = 80/155 (51%)

Query:    68 RSSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVALPGKMRASENLKEKRDALM 127
             R+S S +N       EK   F A S I +G+  S       LP K  +     EK    +
Sbjct:    39 RAS-SNQNSSGYCFPEKFKSF-AKSAILIGAAVSMTGKFSTLPVKAESPVTTIEKTYEEV 96

Query:   128 GKSEVEEM--FEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKL 185
              + ++ E+    +LL+  P  VE L+ ++Q  + +G ++EAL+ ++RL+  +P E EWK 
Sbjct:    97 KEEKLSEITPLSELLDSTPEAVETLRSLLQQKLEKGEDEEALKLLERLVAAQPEETEWKF 156

Query:   186 LQALCYELMGKLSTAKRLFKDILKERPLLLRALHD 220
             L A     MG+   A+++F++IL+  PL   AL +
Sbjct:   157 LMARLLGEMGRPENARQMFEEILQRNPLSFEALFE 191

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2084001 AT3G53560 "AT3G53560" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 60/201 (29%), Positives = 95/201 (47%)

Query:    35 QKHHT---LSFQQTQKQKF-HSLF---ITNLSQSHIAKIPRSSLSPENKIMKVLKEKAVI 87
             Q HH    LSF  T    F  +LF   I  +S    A I  SS   +N I  + K     
Sbjct:     8 QLHHQPFHLSFTHTSSSTFPKNLFKSSIQPISSLKSASIKASSSKFQNSITPLPKSTPFR 67

Query:    88 FLAGSVIFLGSFGS----NLR---PSVALPGKMRASENLKEKRDALMGKSEVEEMFEKLL 140
                 + I L +  +    NL    P++A P  +    +++ K +  +   E E   ++ L
Sbjct:    68 LFKSTCITLTTAAALLLANLHLKSPAIAAP--IAPPPSVESKENVTL--EEEERALDEHL 123

Query:   141 EKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA 200
                P +V+AL+ +M+  ++  +  EA+E + RLI +EP E EW +L+A  +   G L  A
Sbjct:   124 ITHPSDVDALRSLMEVKIKSRKLTEAVEVIDRLIKLEPEEKEWPVLKANIFTYSGDLDLA 183

Query:   201 KRLFKDILKERPLLLRALHDL 221
             K  F++IL + PL + A H L
Sbjct:   184 KTGFEEILAKDPLRVEAYHGL 204

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2181848 AT5G02590 "AT5G02590" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 46/164 (28%), Positives = 76/164 (46%)

Query:    64 AKIPRSSLSPENKIMKVLKEKAVIFLAGSVIFLGSFGSNLRPSVAL-----PGKMRASEN 118
             +++ R+S    N     LK   V     + +   S   + +P  A      P     + +
Sbjct:    40 SRVIRASSFSSNPKPSFLKTTCVTLTTAAALLSASLHLSTKPVTAATLVSPPPPPSTAAD 99

Query:   119 LKEKRDALMGKSEVEEM-FEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE 177
             L   + +   K E EE   EK L K P +VEAL+ +M+   +      ALE + RLI+I+
Sbjct:   100 LTSDQISSRPKEEEEEAALEKHLTKNPNDVEALQSLMKIKFQTKNIDHALEILNRLIEIQ 159

Query:   178 PNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL 221
             P E EW++L+A      G   +A + F+++L + P  + A H L
Sbjct:   160 PEEQEWRILKAQVQTYGGDFDSATKGFEEVLSKDPFRVEAYHGL 203

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2074969 AT3G09490 "AT3G09490" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 35/107 (32%), Positives = 60/107 (56%)

Query:   115 ASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLI 174
             AS     KR A+   + VE   EK LE +  +V AL ++ +   +  ++++A+ F+ RLI
Sbjct:    81 ASFYFVNKRAAMTPVAVVETTLEKHLETQSNDVNALSLLTEIKFKSDKHEQAIVFLDRLI 140

Query:   175 DIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL 221
             +IEP E +W  ++A      GK  +A   F++IL++ P+ + A H L
Sbjct:   141 EIEPYERKWPAMKARILSYHGKSESAIEAFEEILEKDPIRVDAYHYL 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       235   0.00088  113 3  11 22  0.41    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  157 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.27u 0.10s 26.37t   Elapsed:  00:00:01
  Total cpu time:  26.27u 0.10s 26.37t   Elapsed:  00:00:01
  Start:  Fri May 10 23:35:13 2013   End:  Fri May 10 23:35:14 2013

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0019684 "photosynthesis, light reaction" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-05
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	5e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	8e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.002
smart01043	145	smart01043, BTAD, Bacterial transcriptional activa	0.002

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 18/80 (22%), Positives = 39/80 (48%)

Query: 134 EMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL 193
             F+KLL  +P +  AL ++           +A+  +KR ++++P+  E ++  A     
Sbjct: 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681

Query: 194 MGKLSTAKRLFKDILKERPL 213
             +  +AK++ K + K+ P 
Sbjct: 682 AKRTESAKKIAKSLQKQHPK 701

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 22/83 (26%), Positives = 41/83 (49%)

Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQAL 189
            E  E +EK LE +P N +A   +     + G+ +EALE  ++ ++++P+  +      L
Sbjct: 17  DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76

Query: 190 CYELMGKLSTAKRLFKDILKERP 212
            Y  +GK   A   ++  L+  P
Sbjct: 77  AYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 155 QGN--MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP 212
            GN   + G   EALE+ ++ ++++P+  +     A  Y  +GK   A   ++  L+  P
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65

Query: 213 LLLRALHDLG 222
              +A ++LG
Sbjct: 66  DNAKAYYNLG 75

Length = 100

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC 190
           E  ++ + L+  +P N   L++     +   + KEA+E +K+ + ++PN    +L  A  
Sbjct: 324 EALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383

Query: 191 YELMGKLSTAKRLFKDILKERP-------LLLRALHDLG 222
               GK   A R+    L   P       LL +A  +LG
Sbjct: 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG 422

Length = 484

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 15/55 (27%), Positives = 22/55 (40%)

Query: 158 MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP 212
           +R G   EAL  ++  +   P   E  LL        G+L+ A  L +  L   P
Sbjct: 8   LRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Length = 65

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 25/88 (28%), Positives = 44/88 (50%)

Query: 136 FEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG 195
           FEK+L  +P+N+ A+  +    +R G  +EA+ ++++  ++ P E+E  L  A  Y   G
Sbjct: 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581

Query: 196 KLSTAKRLFKDILKERPLLLRALHDLGR 223
           +L  A  +  +     P    A   LGR
Sbjct: 582 QLKKALAILNEAADAAPDSPEAWLMLGR 609

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 133 EEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN 179
               E  L + P   EAL ++ +  +R+GR  EA   ++  +  +P+
Sbjct: 17  LAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPD 63

Length = 65

>gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 13/98 (13%)

Query: 132 VEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP-NEVEWKLLQALC 190
            E   E+L E     +EAL+ + +  +  GR++EAL  ++RL+ ++P  E   +LL    
Sbjct: 49  AEAERERLRE---LRLEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLL-MRA 104

Query: 191 YELMGKLSTAKRLF---KDILKER----PLL-LRALHD 220
               G+ + A R +   + +L +     P   LRAL++
Sbjct: 105 LYRAGRRAEALRAYRRLRRLLADELGVEPGPELRALYE 142

Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
PRK15359	144	type III secretion system chaperone protein SscB;	99.65
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.64
KOG0553	304	consensus TPR repeat-containing protein [General f	99.58
PRK11189	296	lipoprotein NlpI; Provisional	99.52
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.52
PRK15359	144	type III secretion system chaperone protein SscB;	99.52
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.47
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.47
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.45
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.45
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.44
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.44
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.43
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.42
PRK12370	553	invasion protein regulator; Provisional	99.41
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.4
PRK12370	553	invasion protein regulator; Provisional	99.4
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.39
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.38
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.38
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.35
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.35
PRK11189	296	lipoprotein NlpI; Provisional	99.35
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.34
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.32
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.31
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.3
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.3
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.29
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.29
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.28
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.28
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.27
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.27
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.25
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.22
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.22
KOG1126	638	consensus DNA-binding cell division cycle control	99.22
KOG1126	638	consensus DNA-binding cell division cycle control	99.2
PF13371	73	TPR_9: Tetratricopeptide repeat	99.19
KOG1125	579	consensus TPR repeat-containing protein [General f	99.18
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.18
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.17
KOG1125	579	consensus TPR repeat-containing protein [General f	99.17
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.17
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.17
PRK10803	263	tol-pal system protein YbgF; Provisional	99.17
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.16
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.15
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.15
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.15
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.13
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.13
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.12
KOG0553	304	consensus TPR repeat-containing protein [General f	99.12
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.1
PRK14574	822	hmsH outer membrane protein; Provisional	99.1
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.09
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.09
PLN02789	320	farnesyltranstransferase	99.08
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.08
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.08
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.06
PLN02789	320	farnesyltranstransferase	99.06
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.05
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.04
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.04
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.03
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.02
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.02
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.02
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.0
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.0
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.99
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.99
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.98
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.98
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.97
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.96
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.96
KOG2076	895	consensus RNA polymerase III transcription factor	98.94
PRK15331	165	chaperone protein SicA; Provisional	98.89
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.86
PRK14574	822	hmsH outer membrane protein; Provisional	98.84
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.84
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.82
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.8
PF13371	73	TPR_9: Tetratricopeptide repeat	98.8
KOG2003	840	consensus TPR repeat-containing protein [General f	98.79
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.79
PF13512	142	TPR_18: Tetratricopeptide repeat	98.78
PRK10803	263	tol-pal system protein YbgF; Provisional	98.77
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.77
KOG4234	271	consensus TPR repeat-containing protein [General f	98.75
PRK15331	165	chaperone protein SicA; Provisional	98.75
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.75
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.74
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.74
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.73
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.72
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.71
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.7
PRK11906	458	transcriptional regulator; Provisional	98.7
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.7
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.69
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.68
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.68
KOG1129	478	consensus TPR repeat-containing protein [General f	98.67
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.67
PRK11906	458	transcriptional regulator; Provisional	98.67
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.66
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.65
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.64
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.63
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.63
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.62
PF12688	120	TPR_5: Tetratrico peptide repeat	98.61
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.61
PF12688	120	TPR_5: Tetratrico peptide repeat	98.59
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.59
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.58
PF13428	44	TPR_14: Tetratricopeptide repeat	98.58
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.57
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.57
PF13512	142	TPR_18: Tetratricopeptide repeat	98.56
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.55
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.54
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.53
KOG4555	175	consensus TPR repeat-containing protein [Function	98.53
KOG1129	478	consensus TPR repeat-containing protein [General f	98.52
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.49
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.49
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.48
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.48
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.47
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.47
KOG2076	895	consensus RNA polymerase III transcription factor	98.46
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.46
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.46
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.46
PF13428	44	TPR_14: Tetratricopeptide repeat	98.45
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.43
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.42
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.41
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.39
PF13431	34	TPR_17: Tetratricopeptide repeat	98.39
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.35
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.34
KOG4555	175	consensus TPR repeat-containing protein [Function	98.34
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.34
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.33
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.31
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.3
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.26
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.22
PF13431	34	TPR_17: Tetratricopeptide repeat	98.2
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.17
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.17
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.15
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.14
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.14
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.13
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.13
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.1
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.1
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.05
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.03
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.0
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.99
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.99
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.96
KOG2003	840	consensus TPR repeat-containing protein [General f	97.94
KOG4234	271	consensus TPR repeat-containing protein [General f	97.87
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.87
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.84
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.84
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.82
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.81
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.81
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.77
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.75
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.75
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.75
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.74
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.73
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.72
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.72
PRK10941	269	hypothetical protein; Provisional	97.71
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.68
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.68
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.67
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.66
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.64
PLN03218	1060	maturation of RBCL 1; Provisional	97.62
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.59
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.58
PLN03218	1060	maturation of RBCL 1; Provisional	97.55
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.51
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.5
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.49
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.48
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.46
PLN03077	857	Protein ECB2; Provisional	97.43
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.41
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.39
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.37
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.36
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.31
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.25
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.23
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.23
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.23
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.22
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.17
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.16
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.15
PLN03077	857	Protein ECB2; Provisional	97.15
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.15
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.13
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.12
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.07
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.06
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.05
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.98
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.97
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.97
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.95
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.94
PRK10941	269	hypothetical protein; Provisional	96.93
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.9
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.87
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.84
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.82
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.8
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.79
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.78
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.71
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.7
PRK04841	903	transcriptional regulator MalT; Provisional	96.67
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.65
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.61
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.58
COG2912	269	Uncharacterized conserved protein [Function unknow	96.53
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.51
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.47
PRK04841	903	transcriptional regulator MalT; Provisional	96.46
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.43
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.39
KOG3364	149	consensus Membrane protein involved in organellar	96.33
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.33
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.3
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.21
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.18
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.16
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.15
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.05
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.03
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.99
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.95
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.86
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.82
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.8
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.78
COG4455	273	ImpE Protein of avirulence locus involved in tempe	95.76
COG2912	269	Uncharacterized conserved protein [Function unknow	95.74
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.68
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.63
KOG1310	758	consensus WD40 repeat protein [General function pr	95.59
KOG2471	696	consensus TPR repeat-containing protein [General f	95.53
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.5
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.42
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.4
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.36
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.18
KOG1586	288	consensus Protein required for fusion of vesicles	95.18
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.13
KOG3364	149	consensus Membrane protein involved in organellar	95.1
KOG1586	288	consensus Protein required for fusion of vesicles	95.08
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.04
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.94
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	94.92
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.9
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.84
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.82
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.82
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.77
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.74
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.73
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.58
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.54
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.11
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.09
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	94.08
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.8
KOG1585	308	consensus Protein required for fusion of vesicles	93.77
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.64
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	93.61
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	93.49
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.25
COG3947	361	Response regulator containing CheY-like receiver a	93.24
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.21
COG3107	604	LppC Putative lipoprotein [General function predic	93.19
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.14
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.1
KOG1585	308	consensus Protein required for fusion of vesicles	93.02
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.99
COG4455	273	ImpE Protein of avirulence locus involved in tempe	92.85
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.8
KOG0529	421	consensus Protein geranylgeranyltransferase type I	92.71
KOG2047	835	consensus mRNA splicing factor [RNA processing and	92.64
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	92.47
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.2
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.16
KOG4814	872	consensus Uncharacterized conserved protein [Funct	91.99
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	91.63
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.44
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.19
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.07
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.94
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.77
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.64
COG4259	121	Uncharacterized protein conserved in bacteria [Fun	90.61
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	90.49
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	90.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.47
COG5191	435	Uncharacterized conserved protein, contains HAT (H	90.45
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	90.2
KOG1258	577	consensus mRNA processing protein [RNA processing	89.65
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	89.55
COG3947	361	Response regulator containing CheY-like receiver a	89.5
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	89.48
PF12854	34	PPR_1: PPR repeat	89.28
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	89.27
KOG2300	629	consensus Uncharacterized conserved protein [Funct	89.24
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	89.16
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	88.97
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	88.77
PF13041	50	PPR_2: PPR repeat family	88.72
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	88.64
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.23
KOG4814	872	consensus Uncharacterized conserved protein [Funct	87.65
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	87.2
KOG2471	696	consensus TPR repeat-containing protein [General f	87.06
KOG1941	518	consensus Acetylcholine receptor-associated protei	87.04
KOG1310	758	consensus WD40 repeat protein [General function pr	86.77
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.76
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.67
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.66
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	86.09
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.98
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	85.89
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	85.89
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	85.85
KOG4507	886	consensus Uncharacterized conserved protein, conta	85.79
KOG4056	143	consensus Translocase of outer mitochondrial membr	85.53
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	85.3
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	84.82
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	84.32
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	83.94
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	83.9
KOG1258	577	consensus mRNA processing protein [RNA processing	83.73
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	83.56
KOG2581	493	consensus 26S proteasome regulatory complex, subun	83.24
TIGR00985	148	3a0801s04tom mitochondrial import receptor subunit	83.09
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	82.61
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	81.93
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	81.92
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	81.8
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	81.58
PF13041	50	PPR_2: PPR repeat family	81.14
PRK10722	247	hypothetical protein; Provisional	81.06
smart00299	140	CLH Clathrin heavy chain repeat homology.	80.65
PRK11619	644	lytic murein transglycosylase; Provisional	80.63
PF04212	69	MIT: MIT (microtubule interacting and transport) d	80.48
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	80.12

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.65  E-value=5.5e-15  Score=117.28  Aligned_cols=109  Identities=15%  Similarity=0.033  Sum_probs=101.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ......+++++|+..|++++..+|.+.++|..+|.++.+.|++++|+.+|+++++++|+++.+++.+|.++..+|++++|
T Consensus        32 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eA  111 (144)
T PRK15359         32 YASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLA  111 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHH
Confidence            33445667999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          201 KRLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      +..|+++++.+|++..++..++.+.....
T Consensus       112 i~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        112 REAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999988887765543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.64  E-value=3e-14  Score=118.91  Aligned_cols=108  Identities=13%  Similarity=0.104  Sum_probs=100.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCY-ELMGK--LSTAKR  202 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~-~~~g~--~~~A~~  202 (235)
                      .++.++++..++++++.+|+|.++|..+|.+|...|++++|+.+|+++++++|++++.+..+|.++ ...|+  +++|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            345688999999999999999999999999999999999999999999999999999999999975 67787  599999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          203 LFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       203 ~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      .++++++.+|++..+++.+|..+.+.++.++
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~  162 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQ  162 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999999999888654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.58  E-value=1.9e-14  Score=124.76  Aligned_cols=107  Identities=16%  Similarity=0.117  Sum_probs=101.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      +.+|++|+..|.++++.+|+|+..|.+.+.+|.+.|.|+.|++..+.+|.+||.+..+|..+|.+|..+|++++|++.|+
T Consensus        94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk  173 (304)
T KOG0553|consen   94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK  173 (304)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          206 DILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++|++||++..+..+|..+-.+..+..
T Consensus       174 KaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  174 KALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             hhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999988877776643

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.52  E-value=7.6e-13  Score=116.79  Aligned_cols=90  Identities=14%  Similarity=0.120  Sum_probs=86.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .+.+++|+..|+++++.+|+++++|..+|.++...|++++|++.|+++++++|++..++.++|.+++..|++++|++.|+
T Consensus        77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~  156 (296)
T PRK11189         77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL  156 (296)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCH
Q 026642          206 DILKERPLLL  215 (235)
Q Consensus       206 kaL~~~P~~~  215 (235)
                      ++++.+|++.
T Consensus       157 ~al~~~P~~~  166 (296)
T PRK11189        157 AFYQDDPNDP  166 (296)
T ss_pred             HHHHhCCCCH
Confidence            9999999996

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.52  E-value=4.4e-13  Score=121.32  Aligned_cols=107  Identities=15%  Similarity=0.112  Sum_probs=100.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      .....+++++|++.|+++++.+|+++.+|..+|.+|...|++++|+.+++++++++|+++.+++.+|.+|+.+|+|++|+
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~   90 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK   90 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence            34446679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          202 RLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       202 ~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ..|+++++++|++..+...++.+..+.
T Consensus        91 ~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         91 AALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999998888888886555

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.52  E-value=1e-13  Score=109.95  Aligned_cols=98  Identities=14%  Similarity=0.146  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 026642          133 EEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP  212 (235)
Q Consensus       133 ~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P  212 (235)
                      +..|+++++.+|++   +..+|..+...|++++|+.+|++++.++|++..+|..+|.++...|++++|+..|+++++++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            57889999999875   667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhchhhcc
Q 026642          213 LLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       213 ~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++..+++++|.++.+.++.++
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~e  110 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGL  110 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHH
Confidence            999999999999998887654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.47  E-value=3.1e-12  Score=108.17  Aligned_cols=96  Identities=20%  Similarity=0.176  Sum_probs=86.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc--
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNV---EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE---WKLLQALCYELM--  194 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~---~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~---a~~~lA~~~~~~--  194 (235)
                      ....+++++|+..|+++++.+|+++   +++..+|.++.+.|++++|+..|+++++.+|+++.   +++.+|.++...  
T Consensus        43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~  122 (235)
T TIGR03302        43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID  122 (235)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc
Confidence            3456789999999999999999876   68899999999999999999999999999998775   789999999887  


Q ss_pred             ------CCHHHHHHHHHHHHHHCCCCHHHH
Q 026642          195 ------GKLSTAKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       195 ------g~~~~A~~~l~kaL~~~P~~~~a~  218 (235)
                            |++++|++.|++++..+|++..++
T Consensus       123 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  152 (235)
T TIGR03302       123 RVDRDQTAAREAFEAFQELIRRYPNSEYAP  152 (235)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence                  899999999999999999996543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.47  E-value=3.6e-12  Score=104.53  Aligned_cols=108  Identities=18%  Similarity=0.160  Sum_probs=75.2

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR  202 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~  202 (235)
                      ....+++++|++.++++++.+|++..++..+|.++...|++++|++.++++++.+|++..++..+|.++...|++++|++
T Consensus        41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~  120 (234)
T TIGR02521        41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ  120 (234)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence            33455677777777777777777777777777777777777777777777777777777777777777777777766666


Q ss_pred             HHHHHHHHC--CCCHHHHHHHHHHHhhchh
Q 026642          203 LFKDILKER--PLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       203 ~l~kaL~~~--P~~~~a~~~l~~~~~~~~~  230 (235)
                      .+++++...  +.....+.+++.++...++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  150 (234)
T TIGR02521       121 QFEQAIEDPLYPQPARSLENAGLCALKAGD  150 (234)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHcCC
Confidence            666666532  3335556666666655554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.45  E-value=8.8e-13  Score=102.01  Aligned_cols=99  Identities=13%  Similarity=0.044  Sum_probs=91.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      +.......+++++|++.++++++.+|++.++|..+|.++...|++++|+.+++++++.+|+++..++.+|.+|...|+++
T Consensus        23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~  102 (135)
T TIGR02552        23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPE  102 (135)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Confidence            33444456678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHH
Q 026642          199 TAKRLFKDILKERPLLLRA  217 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a  217 (235)
                      +|++.|+++++++|++...
T Consensus       103 ~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552       103 SALKALDLAIEICGENPEY  121 (135)
T ss_pred             HHHHHHHHHHHhccccchH
Confidence            9999999999999999553

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.45  E-value=3.1e-12  Score=107.50  Aligned_cols=109  Identities=20%  Similarity=0.147  Sum_probs=96.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      ...+.+++..|..-++++|+.||++..+|..++.+|.+.|+.+.|-+.|++++.++|++.+.+++.|.-+..+|++++|.
T Consensus        44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~  123 (250)
T COG3063          44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM  123 (250)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence            44456678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCC---HHHHHHHHHHHhhchhh
Q 026642          202 RLFKDILKERPLL---LRALHDLGRYVSMTLQI  231 (235)
Q Consensus       202 ~~l~kaL~~~P~~---~~a~~~l~~~~~~~~~~  231 (235)
                      ..|++++. +|..   ...+.|+|.|-.+.++.
T Consensus       124 q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~  155 (250)
T COG3063         124 QQFERALA-DPAYGEPSDTLENLGLCALKAGQF  155 (250)
T ss_pred             HHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCc
Confidence            99999874 5544   78888888887766653

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.44  E-value=4.3e-12  Score=98.15  Aligned_cols=100  Identities=17%  Similarity=0.211  Sum_probs=95.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642          134 EMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPL  213 (235)
Q Consensus       134 ~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~  213 (235)
                      +.|+++++.+|++.++...+|..+.+.|++++|++.+++++..+|+++.++..+|.++..+|++++|.+.++++++.+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhchhhcc
Q 026642          214 LLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       214 ~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +...++.+|.++...++.++
T Consensus        84 ~~~~~~~la~~~~~~g~~~~  103 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPES  103 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHH
Confidence            99999999999998887543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.44  E-value=6.5e-13  Score=91.53  Aligned_cols=68  Identities=29%  Similarity=0.414  Sum_probs=66.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCC
Q 026642          145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG-KLSTAKRLFKDILKERP  212 (235)
Q Consensus       145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g-~~~~A~~~l~kaL~~~P  212 (235)
                      ++++.|..+|..++..|++++|+.+|+++++++|+++.+++++|.+|..+| ++++|++.++++++++|
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            468999999999999999999999999999999999999999999999999 79999999999999998

...

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.43  E-value=2.2e-12  Score=124.19  Aligned_cols=104  Identities=14%  Similarity=0.121  Sum_probs=56.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      +++++|+..|+++++.+|++..+|..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|++++|+.+|++
T Consensus       345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k  424 (615)
T TIGR00990       345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK  424 (615)
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHCCCCHHHHHHHHHHHhhchh
Q 026642          207 ILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +++++|++..++.++|.++.+.++
T Consensus       425 al~l~P~~~~~~~~la~~~~~~g~  448 (615)
T TIGR00990       425 SIDLDPDFIFSHIQLGVTQYKEGS  448 (615)
T ss_pred             HHHcCccCHHHHHHHHHHHHHCCC
Confidence            555555555555555555544443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.42  E-value=5.1e-12  Score=121.71  Aligned_cols=111  Identities=15%  Similarity=0.138  Sum_probs=104.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      .....+++++|+..|+++++.+|+++++|..+|.++...|++++|+.+|+++++++|++..++..+|.++..+|++++|+
T Consensus       374 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~  453 (615)
T TIGR00990       374 MNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSM  453 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence            33456679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          202 RLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       202 ~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ..|+++++.+|++..++..+|.++...++.+
T Consensus       454 ~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~  484 (615)
T TIGR00990       454 ATFRRCKKNFPEAPDVYNYYGELLLDQNKFD  484 (615)
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence            9999999999999999999999998877643

>PRK12370 invasion protein regulator; Provisional

Probab=99.41  E-value=2.6e-12  Score=122.46  Aligned_cols=95  Identities=18%  Similarity=0.044  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      +++|+..++++++.+|++++++..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|++++|+..+++++
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al  399 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL  399 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            56777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHCCCCHHHHHHHHH
Q 026642          209 KERPLLLRALHDLGR  223 (235)
Q Consensus       209 ~~~P~~~~a~~~l~~  223 (235)
                      +++|++..+++.++.
T Consensus       400 ~l~P~~~~~~~~~~~  414 (553)
T PRK12370        400 KLDPTRAAAGITKLW  414 (553)
T ss_pred             hcCCCChhhHHHHHH
Confidence            777777655444433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.40  E-value=1e-11  Score=99.44  Aligned_cols=97  Identities=11%  Similarity=0.037  Sum_probs=90.7

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 026642          115 ASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELM  194 (235)
Q Consensus       115 ~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~  194 (235)
                      ..-.+.-.....+++++|+..|+-+...||.+.+.|++||.++...|+|++|+++|.+++.++|++++.+.+.|.||...
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            33445566777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHC
Q 026642          195 GKLSTAKRLFKDILKER  211 (235)
Q Consensus       195 g~~~~A~~~l~kaL~~~  211 (235)
                      |+.++|++.|+.++..-
T Consensus       117 G~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        117 DNVCYAIKALKAVVRIC  133 (157)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999999877

>PRK12370 invasion protein regulator; Provisional

Probab=99.40  E-value=7.1e-12  Score=119.50  Aligned_cols=111  Identities=11%  Similarity=0.013  Sum_probs=100.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      -....+++++|+..|+++++.+|++++++..+|.++...|++++|+.+++++++++|+++.++..++.+++..|++++|+
T Consensus       347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~  426 (553)
T PRK12370        347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAI  426 (553)
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHH
Confidence            33445678999999999999999999999999999999999999999999999999999988888888888999999999


Q ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHhhchhhc
Q 026642          202 RLFKDILKER-PLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       202 ~~l~kaL~~~-P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +.++++++.. |++..++..+|.++...++.+
T Consensus       427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~  458 (553)
T PRK12370        427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHE  458 (553)
T ss_pred             HHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence            9999999885 788999999999998877644

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=1.3e-11  Score=107.46  Aligned_cols=106  Identities=19%  Similarity=0.167  Sum_probs=97.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK---LSTAKRL  203 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~---~~~A~~~  203 (235)
                      .+.++.+..++..|..||+|++.|..||.+|+.+|+++.|...|.+++++.|++++.+..+|.+++.+.+   ..++.+.
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            3467888999999999999999999999999999999999999999999999999999999999887754   5789999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          204 FKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +++++++||+|+++++-|+..+...++.+
T Consensus       216 l~~al~~D~~~iral~lLA~~afe~g~~~  244 (287)
T COG4235         216 LRQALALDPANIRALSLLAFAAFEQGDYA  244 (287)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcccHH
Confidence            99999999999999999999988877754

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.38  E-value=3.3e-12  Score=119.70  Aligned_cols=102  Identities=19%  Similarity=0.233  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      .|-|+..|+++++.+|+.++|+.++|..+-..|+-.||+++|.+++++.|+.+++.+++|.+|.++|.+++|...|++++
T Consensus       302 ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al  381 (966)
T KOG4626|consen  302 LDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL  381 (966)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHCCCCHHHHHHHHHHHhhchh
Q 026642          209 KERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       209 ~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +..|....++.+|+.+|.+++.
T Consensus       382 ~v~p~~aaa~nNLa~i~kqqgn  403 (966)
T KOG4626|consen  382 EVFPEFAAAHNNLASIYKQQGN  403 (966)
T ss_pred             hhChhhhhhhhhHHHHHHhccc
Confidence            5555555555555555555444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.38  E-value=2.9e-12  Score=120.05  Aligned_cols=112  Identities=18%  Similarity=0.158  Sum_probs=81.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      +.....+.+..++|...|+++++..|+.+.+..+||.+|.++|++++|+.+|+++++++|..++++.++|.+|..+|+.+
T Consensus       360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~  439 (966)
T KOG4626|consen  360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS  439 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence            33333333446777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +|+.+|++++..+|..++++.+|+.+|...+.
T Consensus       440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn  471 (966)
T KOG4626|consen  440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGN  471 (966)
T ss_pred             HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence            77777777777777777777777777765554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.35  E-value=1.6e-11  Score=119.57  Aligned_cols=118  Identities=12%  Similarity=0.142  Sum_probs=110.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026642          117 ENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK  196 (235)
Q Consensus       117 ~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~  196 (235)
                      ..+.+-....+.+++|+++++.+++..|++..++..++.++.+.+++++|+..++++++.+|+++.+++.+|.++...|+
T Consensus        90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~  169 (694)
T PRK15179         90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ  169 (694)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc
Confidence            34555666677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhccc
Q 026642          197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSL  234 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~~  234 (235)
                      +++|.+.|++++..+|++..++.++|.++...++.+++
T Consensus       170 ~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A  207 (694)
T PRK15179        170 SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA  207 (694)
T ss_pred             hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999988886653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.35  E-value=2.3e-11  Score=122.45  Aligned_cols=108  Identities=11%  Similarity=0.081  Sum_probs=100.9

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      ..+++++|+..|+++++.+|+ ++++..+|.++.+.|++++|+.+|+++++++|+++.++.++|.++...|++++|++.|
T Consensus       588 ~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l  666 (987)
T PRK09782        588 IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML  666 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            347899999999999999996 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          205 KDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +++++.+|++..+++++|.++.+.++.++
T Consensus       667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~e  695 (987)
T PRK09782        667 ERAHKGLPDDPALIRQLAYVNQRLDDMAA  695 (987)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999998887543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.35  E-value=1.7e-11  Score=108.24  Aligned_cols=104  Identities=11%  Similarity=0.052  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEP----RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P----~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      .+.++..+.+++...+    +.++.|..+|.+|...|++++|+..|+++++++|+++.+|+.+|.++...|++++|++.|
T Consensus        42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~  121 (296)
T PRK11189         42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAF  121 (296)
T ss_pred             HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            5778899999996443    347789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          205 KDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +++++++|++..++.++|.++...++.+
T Consensus       122 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~  149 (296)
T PRK11189        122 DSVLELDPTYNYAYLNRGIALYYGGRYE  149 (296)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999988766544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.34  E-value=9.9e-12  Score=99.47  Aligned_cols=94  Identities=10%  Similarity=0.010  Sum_probs=88.8

Q ss_pred             HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Q 026642          139 LLEKE-PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRA  217 (235)
Q Consensus       139 aL~~~-P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a  217 (235)
                      +...+ +++.+..+.+|..+...|++++|+..|+-+..+||.+.++|++||.|+..+|+|++|++.|.+++.++|++++.
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            44556 78899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhhc
Q 026642          218 LHDLGRYVSMTLQIQ  232 (235)
Q Consensus       218 ~~~l~~~~~~~~~~~  232 (235)
                      +++.|.++.+.++..
T Consensus       106 ~~~ag~c~L~lG~~~  120 (157)
T PRK15363        106 PWAAAECYLACDNVC  120 (157)
T ss_pred             HHHHHHHHHHcCCHH
Confidence            999999999888754

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.32  E-value=4.3e-11  Score=99.91  Aligned_cols=92  Identities=14%  Similarity=0.126  Sum_probs=85.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQG-NMRRGR--NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~-~~~~g~--~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      ....+++++|+..|+++++.+|++++++..+|.+ +...|+  +++|++.++++++++|+++.++.++|.++...|++++
T Consensus        83 ~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~  162 (198)
T PRK10370         83 YLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQ  162 (198)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Confidence            3346678999999999999999999999999997 477787  5999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCC
Q 026642          200 AKRLFKDILKERPLL  214 (235)
Q Consensus       200 A~~~l~kaL~~~P~~  214 (235)
                      |+..|+++++.+|.+
T Consensus       163 Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        163 AIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHHHhhCCCC
Confidence            999999999999987

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.31  E-value=1.1e-11  Score=84.56  Aligned_cols=64  Identities=16%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Q 026642          152 VVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLL  215 (235)
Q Consensus       152 ~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~  215 (235)
                      .+|..+++.|++++|+..|+++++.+|+++++|+.+|.++..+|++++|+..|+++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999974

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.30  E-value=1.3e-10  Score=95.22  Aligned_cols=112  Identities=18%  Similarity=0.204  Sum_probs=94.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE--PNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~--P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      .-....+++++|++.++++++.+|++..++..+|.++...|++++|++.++++++..  +.....+..+|.++...|+++
T Consensus        73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  152 (234)
T TIGR02521        73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD  152 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence            334445678899999999999999999999999999999999999999999998754  455678888899999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +|.+.++++++.+|++..++..++.++.+.++..
T Consensus       153 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       153 KAEKYLTRALQIDPQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence            9999999999999998888888888888776643

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.30  E-value=1.3e-10  Score=87.00  Aligned_cols=97  Identities=15%  Similarity=0.161  Sum_probs=87.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCC
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGK  196 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~  196 (235)
                      ....+++++|++.|+++++.+|++   .+++..+|.++.+.|++++|+++|++++..+|++   +.+++.+|.++..+|+
T Consensus        12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~   91 (119)
T TIGR02795        12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD   91 (119)
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC
Confidence            344567999999999999999877   6799999999999999999999999999999885   6789999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHH
Q 026642          197 LSTAKRLFKDILKERPLLLRALH  219 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a~~  219 (235)
                      +++|.+.++++++..|++..+..
T Consensus        92 ~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        92 KEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             hHHHHHHHHHHHHHCcCChhHHH
Confidence            99999999999999999966543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.29  E-value=1.8e-11  Score=106.61  Aligned_cols=114  Identities=20%  Similarity=0.177  Sum_probs=94.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      .-....++.++|++.|+++++.+|+|.+++..++.+++..|+++++.+.++...+..|+++..|..+|.+|..+|++++|
T Consensus       154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A  233 (280)
T PF13429_consen  154 EIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA  233 (280)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence            33445566899999999999999999999999999999999999999999999999899999999999999999999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHhhchhhccc
Q 026642          201 KRLFKDILKERPLLLRALHDLGRYVSMTLQIQSL  234 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~~  234 (235)
                      ...|+++++.+|+|+..+..++.++.+.++.+++
T Consensus       234 l~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A  267 (280)
T PF13429_consen  234 LEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA  267 (280)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred             cccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999998887654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=2.6e-11  Score=110.40  Aligned_cols=105  Identities=19%  Similarity=0.237  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      -++|+..|+++|+.||+...+|..+|.-|+.+++...|++.|++|++.+|.|.++|+.+|++|..++-..=|.-+|++++
T Consensus       346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~  425 (559)
T KOG1155|consen  346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL  425 (559)
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          209 KERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       209 ~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++.|+|.+.|..+|.+|.+.+..++
T Consensus       426 ~~kPnDsRlw~aLG~CY~kl~~~~e  450 (559)
T KOG1155|consen  426 ELKPNDSRLWVALGECYEKLNRLEE  450 (559)
T ss_pred             hcCCCchHHHHHHHHHHHHhccHHH
Confidence            9999999999999999988876544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.28  E-value=9.6e-11  Score=100.00  Aligned_cols=114  Identities=18%  Similarity=0.139  Sum_probs=104.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      +....-..+++.+|+..+++++..+|+|.++|..+|.+|.+.|++++|-..|.+++++.|+++.+..++|..|+-.||++
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~  185 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLE  185 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence            44455556789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      .|..++.++...-+.+..+..+++++....++..
T Consensus       186 ~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         186 DAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence            9999999999888889999999999988777644

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.28  E-value=8.3e-11  Score=114.38  Aligned_cols=107  Identities=19%  Similarity=0.117  Sum_probs=74.3

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKE----ALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~e----Ai~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ..+++++|++.|+++++.+|+++.++..+|.++...|++++    |+..|+++++++|+++.++..+|.++...|++++|
T Consensus       224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA  303 (656)
T PRK15174        224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKA  303 (656)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            34556677777777777777777777777777777777664    67777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          201 KRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      +..++++++++|++..++..++.++.+.++.
T Consensus       304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~  334 (656)
T PRK15174        304 IPLLQQSLATHPDLPYVRAMYARALRQVGQY  334 (656)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            7777777777777766666666666665553

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.27  E-value=8.7e-11  Score=118.28  Aligned_cols=113  Identities=9%  Similarity=-0.005  Sum_probs=104.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      +.......+++++|++.|+++++.+|++++++..+|.++...|++++|++.|+++++++|+++.+++++|.++..+|+++
T Consensus       615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~  694 (987)
T PRK09782        615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA  694 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            33444556778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      +|++.|+++++++|++.......|.+..+++..
T Consensus       695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~  727 (987)
T PRK09782        695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNF  727 (987)
T ss_pred             HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHH
Confidence            999999999999999999998888887777643

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.27  E-value=1.7e-11  Score=87.98  Aligned_cols=81  Identities=25%  Similarity=0.427  Sum_probs=73.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPR--NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~--~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      .+++++|+..++++++.+|.  +...+..+|.+|++.|+|++|+..+++ .+.++.+...++.+|.++..+|+|++|++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            45689999999999999995  567888899999999999999999999 889999999999999999999999999999


Q ss_pred             HHHH
Q 026642          204 FKDI  207 (235)
Q Consensus       204 l~ka  207 (235)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.25  E-value=1.6e-10  Score=112.44  Aligned_cols=110  Identities=13%  Similarity=0.162  Sum_probs=98.8

Q ss_pred             HHhcCCHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          123 RDALMGKS----EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       123 ~~~~~~~~----eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      ....++++    +|+..|+++++.+|+++.++..+|.++.+.|++++|+.+++++++++|+++.++..+|.+|...|+++
T Consensus       256 l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~  335 (656)
T PRK15174        256 YYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT  335 (656)
T ss_pred             HHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            33445555    48999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +|++.|+++++.+|++..++..++.++.+.++.+
T Consensus       336 eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~d  369 (656)
T PRK15174        336 AASDEFVQLAREKGVTSKWNRYAAAALLQAGKTS  369 (656)
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHH
Confidence            9999999999999999877777787777766644

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.22  E-value=2.3e-10  Score=79.43  Aligned_cols=88  Identities=26%  Similarity=0.380  Sum_probs=82.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .+++++|+..++++++.+|++..++..+|.++...|++++|+++++++++..|.+..++..+|.++...|++++|.+.++
T Consensus        13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   92 (100)
T cd00189          13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE   92 (100)
T ss_pred             HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCC
Q 026642          206 DILKERPL  213 (235)
Q Consensus       206 kaL~~~P~  213 (235)
                      ++++.+|+
T Consensus        93 ~~~~~~~~  100 (100)
T cd00189          93 KALELDPN  100 (100)
T ss_pred             HHHccCCC
Confidence            99988874

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.22  E-value=3.3e-10  Score=111.95  Aligned_cols=115  Identities=17%  Similarity=0.158  Sum_probs=105.4

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 026642          116 SENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG  195 (235)
Q Consensus       116 ~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g  195 (235)
                      ...+.......+++++|++.|+++++.+|++++++..++.++...|++++|+..++++++.+|+++. +..+|.++...|
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g  130 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG  130 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence            3445555666778999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          196 KLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      ++++|+..|+++++.+|++..++..++.++.+.++.
T Consensus       131 ~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~  166 (765)
T PRK10049        131 RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS  166 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence            999999999999999999999999999888765543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=2.2e-11  Score=114.60  Aligned_cols=105  Identities=14%  Similarity=0.182  Sum_probs=71.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      +.+.|++.|++++..||+++.+|..+|.-+....++|.|..+|++++..+|.+..||+.+|.+|..+++++.|.-.|++|
T Consensus       436 dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA  515 (638)
T KOG1126|consen  436 DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA  515 (638)
T ss_pred             HHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhh
Confidence            35677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          208 LKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++.+|.+...+..+|..+++.++.+
T Consensus       516 ~~INP~nsvi~~~~g~~~~~~k~~d  540 (638)
T KOG1126|consen  516 VEINPSNSVILCHIGRIQHQLKRKD  540 (638)
T ss_pred             hcCCccchhHHhhhhHHHHHhhhhh
Confidence            7777776666666666666555544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=1.5e-11  Score=115.80  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=92.9

Q ss_pred             HHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          130 SEVEEMF-EKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       130 ~eA~~~~-e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      +-+...+ +..++.+|+.++.|..+|.+|--+++++.|++++++++.+||++..+|.++|.=+....++|+|++.|+++|
T Consensus       403 ~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al  482 (638)
T KOG1126|consen  403 EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL  482 (638)
T ss_pred             hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence            3344444 446778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCHHHHHHHHHHHhhchhh
Q 026642          209 KERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       209 ~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      ..+|++-.||||+|++|.|.++.
T Consensus       483 ~~~~rhYnAwYGlG~vy~Kqek~  505 (638)
T KOG1126|consen  483 GVDPRHYNAWYGLGTVYLKQEKL  505 (638)
T ss_pred             cCCchhhHHHHhhhhheeccchh
Confidence            99999999999999999998864

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.19  E-value=1.6e-10  Score=80.30  Aligned_cols=71  Identities=23%  Similarity=0.261  Sum_probs=65.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 026642          153 VMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR  223 (235)
Q Consensus       153 la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~  223 (235)
                      |..+|++.++|++|+++++++++++|+++.+|..+|.+|..+|++++|.+.|+++++.+|++..+..-.++
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            45789999999999999999999999999999999999999999999999999999999999777665554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.18  E-value=6.8e-11  Score=109.95  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKEP--RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P--~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ..-.+.|-++...+|  .|++.+..||.+|.-.|+|+.|++||+.|+..+|+|...|+.||..+....+.++|+..|+++
T Consensus       411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA  490 (579)
T KOG1125|consen  411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA  490 (579)
T ss_pred             HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence            344577888888888  799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          208 LKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      |++.|+++++++++|..|+..+...+
T Consensus       491 LqLqP~yVR~RyNlgIS~mNlG~ykE  516 (579)
T KOG1125|consen  491 LQLQPGYVRVRYNLGISCMNLGAYKE  516 (579)
T ss_pred             HhcCCCeeeeehhhhhhhhhhhhHHH
Confidence            99999999999999999998887544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=2.1e-10  Score=105.90  Aligned_cols=102  Identities=18%  Similarity=0.259  Sum_probs=97.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .+++.+|+..|.++++.+|+|+.++.++|.+|.+.|++.+|+...+++++++|++..+|+..|.++..+.+|++|.+.|+
T Consensus       371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~  450 (539)
T KOG0548|consen  371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ  450 (539)
T ss_pred             ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhh
Q 026642          206 DILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      ++++.||++.++..++..++..
T Consensus       451 eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  451 EALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHhcCchhHHHHHHHHHHHHH
Confidence            9999999999999888888774

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.17  E-value=5.6e-10  Score=114.76  Aligned_cols=110  Identities=15%  Similarity=0.077  Sum_probs=91.9

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-------------
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC-------------  190 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~-------------  190 (235)
                      ...+++++|++.|+++++.+|++..++..+|.++...|++++|+++|+++++++|++..++..++.+             
T Consensus       362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l  441 (1157)
T PRK11447        362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI  441 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3456788999999999999999999999999999999999999999999999999887766554443             


Q ss_pred             -----------------------------HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          191 -----------------------------YELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       191 -----------------------------~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                                                   +...|++++|++.|+++++.+|++..+++.++.+|.+.++.++
T Consensus       442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~  513 (1157)
T PRK11447        442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ  513 (1157)
T ss_pred             HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence                                         4467899999999999999999999899999998888776543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.17  E-value=7.1e-11  Score=109.83  Aligned_cols=109  Identities=13%  Similarity=0.093  Sum_probs=95.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      -.+-.+++++|+.+|+.+|..+|+|...|..||..+....+.+|||..|++|+++.|.++++++++|..++.+|.|++|+
T Consensus       439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~  518 (579)
T KOG1125|consen  439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV  518 (579)
T ss_pred             HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence            33445568999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCC------------HHHHHHHHHHHhhchh
Q 026642          202 RLFKDILKERPLL------------LRALHDLGRYVSMTLQ  230 (235)
Q Consensus       202 ~~l~kaL~~~P~~------------~~a~~~l~~~~~~~~~  230 (235)
                      ++|-.+|.+.+..            +-....+++....+.|
T Consensus       519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            9999999988771            2223446666666555

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=4.5e-10  Score=102.49  Aligned_cols=106  Identities=17%  Similarity=0.224  Sum_probs=100.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      +...|++.|+.|++.+|.|-.||++||+.|.-.+-..=|+-+|++++++.|+|...|..+|.||...++.++|+++|.++
T Consensus       379 Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra  458 (559)
T KOG1155|consen  379 NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA  458 (559)
T ss_pred             ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          208 LKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +.....+..++..+|.+|.+..+..+
T Consensus       459 i~~~dte~~~l~~LakLye~l~d~~e  484 (559)
T KOG1155|consen  459 ILLGDTEGSALVRLAKLYEELKDLNE  484 (559)
T ss_pred             HhccccchHHHHHHHHHHHHHHhHHH
Confidence            99998889999999999998887543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.17  E-value=4.6e-10  Score=94.51  Aligned_cols=106  Identities=23%  Similarity=0.252  Sum_probs=97.1

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN---EVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~---~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      ..++.+.|.+.|++++..+|++.+++++.|.-++.+|++++|..+|++++. +|.   -...+.++|.|...+|+++.|.
T Consensus        81 ~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~  159 (250)
T COG3063          81 KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAE  159 (250)
T ss_pred             HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHH
Confidence            345568899999999999999999999999999999999999999999998 355   4678999999999999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          202 RLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       202 ~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      ++|+++|+.+|++..+...++....+.++.
T Consensus       160 ~~l~raL~~dp~~~~~~l~~a~~~~~~~~y  189 (250)
T COG3063         160 EYLKRALELDPQFPPALLELARLHYKAGDY  189 (250)
T ss_pred             HHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence            999999999999999999999888887764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.17  E-value=9.6e-10  Score=95.68  Aligned_cols=94  Identities=16%  Similarity=0.221  Sum_probs=87.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLST  199 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~  199 (235)
                      .+++++|+..|++.++.+|++   +.+++.+|.+|+..|++++|+..|+++++..|++   +++++.+|.++..+|++++
T Consensus       156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~  235 (263)
T PRK10803        156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK  235 (263)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence            467999999999999999998   5899999999999999999999999999998884   7899999999999999999


Q ss_pred             HHHHHHHHHHHCCCCHHHHH
Q 026642          200 AKRLFKDILKERPLLLRALH  219 (235)
Q Consensus       200 A~~~l~kaL~~~P~~~~a~~  219 (235)
                      |++.|+++++.+|+...+-.
T Consensus       236 A~~~~~~vi~~yP~s~~a~~  255 (263)
T PRK10803        236 AKAVYQQVIKKYPGTDGAKQ  255 (263)
T ss_pred             HHHHHHHHHHHCcCCHHHHH
Confidence            99999999999999965443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.16  E-value=4.8e-09  Score=90.30  Aligned_cols=93  Identities=13%  Similarity=0.081  Sum_probs=80.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcC
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEAL---KVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMG  195 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~---~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g  195 (235)
                      .....+++++|++.|++++...|+...+.   ..+|.+|++.|++++|+..+++.++++|++   +.+++.+|.++...+
T Consensus        41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~  120 (243)
T PRK10866         41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD  120 (243)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence            34446789999999999999999987665   889999999999999999999999999987   467889998875554


Q ss_pred             C------------------HHHHHHHHHHHHHHCCCC
Q 026642          196 K------------------LSTAKRLFKDILKERPLL  214 (235)
Q Consensus       196 ~------------------~~~A~~~l~kaL~~~P~~  214 (235)
                      +                  ..+|++.|+++++..|+.
T Consensus       121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S  157 (243)
T PRK10866        121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS  157 (243)
T ss_pred             hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence            1                  247889999999999998

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.15  E-value=4.7e-10  Score=115.34  Aligned_cols=109  Identities=15%  Similarity=0.177  Sum_probs=87.2

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------------H--HHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE------------W--KLLQAL  189 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~------------a--~~~lA~  189 (235)
                      ...+++++|+..|+++++.+|++++++..+|.+|.++|++++|+.+|+++++++|++..            +  ...+|.
T Consensus       280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~  359 (1157)
T PRK11447        280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD  359 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999887642            1  123466


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          190 CYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       190 ~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++...|++++|++.|+++++.+|++..++.++|.++.+.++.+
T Consensus       360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~  402 (1157)
T PRK11447        360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYA  402 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            7777777888888888887777777777777777777766543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.15  E-value=5.2e-10  Score=95.54  Aligned_cols=105  Identities=17%  Similarity=0.273  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      -+.+.....+.+..+|.|.+.+..+|...++.|+|.+|+..+.++..++|+|.++|..+|.+|.+.|++++|...|.+++
T Consensus        82 a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl  161 (257)
T COG5010          82 ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQAL  161 (257)
T ss_pred             ccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHH
Confidence            34556667777788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          209 KERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       209 ~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++.|++..++-|+++.|.-.+|.+.
T Consensus       162 ~L~~~~p~~~nNlgms~~L~gd~~~  186 (257)
T COG5010         162 ELAPNEPSIANNLGMSLLLRGDLED  186 (257)
T ss_pred             HhccCCchhhhhHHHHHHHcCCHHH
Confidence            9999999999999999988887653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.15  E-value=9.5e-10  Score=106.92  Aligned_cols=106  Identities=14%  Similarity=0.101  Sum_probs=82.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .+++++|++.|+++++.+|+++.++..++.++...|+ ++|+..+++++++.|+++..+..+|.++...|++++|++.|+
T Consensus       783 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  861 (899)
T TIGR02917       783 QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR  861 (899)
T ss_pred             CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4556777777777777777777777777777777777 667777777777777777777778888888888888888888


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          206 DILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++++.+|.+..++..++.++.+.++..
T Consensus       862 ~a~~~~~~~~~~~~~l~~~~~~~g~~~  888 (899)
T TIGR02917       862 KAVNIAPEAAAIRYHLALALLATGRKA  888 (899)
T ss_pred             HHHhhCCCChHHHHHHHHHHHHcCCHH
Confidence            888888888888888888887776644

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.13  E-value=1.1e-09  Score=106.36  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=91.8

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      ...+++++|+..|+++++.+|++.+++..++.++...|++++|++.++++++.+|++..++..+|.++...|++++|.+.
T Consensus       136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~  215 (899)
T TIGR02917       136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA  215 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence            33566788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          204 FKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      |+++++.+|++..++..++.++...++.
T Consensus       216 ~~~a~~~~p~~~~~~~~~~~~~~~~g~~  243 (899)
T TIGR02917       216 YRKAIALRPNNPAVLLALATILIEAGEF  243 (899)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence            8888888888888888888887766553

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.13  E-value=9.5e-10  Score=100.84  Aligned_cols=110  Identities=19%  Similarity=0.143  Sum_probs=104.0

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      .....+++|+..+.+.++..|+|+..+...+.++++.|+.++|++.+++++.++|+.+..++++|.+|...|++.+|+..
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~  396 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRI  396 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHH
Confidence            34556899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          204 FKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++..+..+|+++..|..|+..|...++..+
T Consensus       397 L~~~~~~~p~dp~~w~~LAqay~~~g~~~~  426 (484)
T COG4783         397 LNRYLFNDPEDPNGWDLLAQAYAELGNRAE  426 (484)
T ss_pred             HHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence            999999999999999999999999887543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.12  E-value=2.2e-10  Score=78.45  Aligned_cols=65  Identities=28%  Similarity=0.478  Sum_probs=42.3

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 026642          158 MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLG  222 (235)
Q Consensus       158 ~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~  222 (235)
                      ++.|++++|++.|+++++.+|++.++++.+|.+|...|++++|.+.+++++..+|++..++.-++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            45666667777777777777776666666777777777777777777777666666655544433

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.12  E-value=2.7e-10  Score=99.03  Aligned_cols=86  Identities=20%  Similarity=0.218  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      ++-+..-|.-.++.++|++|+..|.+||+++|+++.+|.++|.+|..+|+|+.|++.++.+|.+||.+.++|..+|++|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            45566778889999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hchhhc
Q 026642          227 MTLQIQ  232 (235)
Q Consensus       227 ~~~~~~  232 (235)
                      ..++.+
T Consensus       161 ~~gk~~  166 (304)
T KOG0553|consen  161 ALGKYE  166 (304)
T ss_pred             ccCcHH
Confidence            876644

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.10  E-value=2.2e-09  Score=90.66  Aligned_cols=112  Identities=19%  Similarity=0.100  Sum_probs=97.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH------
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVE---ALKVVMQGNMRR--------GRNKEALEFVKRLIDIEPNEVEWK------  184 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~---a~~~la~~~~~~--------g~~~eAi~~l~kai~l~P~~~~a~------  184 (235)
                      .....+++++|+..|+++++.+|+++.   ++..+|.++.+.        |++++|++.++++++.+|++..++      
T Consensus        79 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~  158 (235)
T TIGR03302        79 AYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM  158 (235)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence            334456789999999999999998887   799999999986        889999999999999999986543      


Q ss_pred             -----------HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHhhchhhcc
Q 026642          185 -----------LLQALCYELMGKLSTAKRLFKDILKERPLL---LRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       185 -----------~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~~l~~~~~~~~~~~~  233 (235)
                                 ..+|.+|...|++++|+..|+++++..|++   ..+++.+|.++.+.++..+
T Consensus       159 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~  221 (235)
T TIGR03302       159 DYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDL  221 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH
Confidence                       356888999999999999999999998765   6899999999999888554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.10  E-value=1.8e-09  Score=107.06  Aligned_cols=110  Identities=13%  Similarity=0.033  Sum_probs=92.7

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      -..+++++|++.|+++++.+|+++.+...++.++...|+.++|+.++++++.-+|........+|.+|..+|++++|++.
T Consensus        45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel  124 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL  124 (822)
T ss_pred             HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34567899999999999999999755558899999999999999999999933333444444558899999999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          204 FKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      |+++++.+|++..++.++++.+...++.++
T Consensus       125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~e  154 (822)
T PRK14574        125 WQSSLKKDPTNPDLISGMIMTQADAGRGGV  154 (822)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhcCCHHH
Confidence            999999999999999999998888776554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.09  E-value=2.3e-09  Score=96.72  Aligned_cols=103  Identities=15%  Similarity=0.122  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNV-----EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR  202 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~-----~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~  202 (235)
                      ++++|++.++++++.+|.+.     ..+..+|.++.+.|++++|+.+++++++.+|++..+++.+|.+|...|++++|++
T Consensus       156 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  235 (389)
T PRK11788        156 DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE  235 (389)
T ss_pred             hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            34555555555554444332     1333445555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHCCCC-HHHHHHHHHHHhhchh
Q 026642          203 LFKDILKERPLL-LRALHDLGRYVSMTLQ  230 (235)
Q Consensus       203 ~l~kaL~~~P~~-~~a~~~l~~~~~~~~~  230 (235)
                      .++++++.+|++ ..++..++.+|.+.++
T Consensus       236 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~  264 (389)
T PRK11788        236 ALERVEEQDPEYLSEVLPKLMECYQALGD  264 (389)
T ss_pred             HHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence            555555555544 2334444444444433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.09  E-value=3.1e-09  Score=105.12  Aligned_cols=121  Identities=11%  Similarity=0.033  Sum_probs=111.4

Q ss_pred             CccchHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026642          112 KMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCY  191 (235)
Q Consensus       112 ~~~~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~  191 (235)
                      ....+..+.+-....++.++|++.++++...+|.++.++..+|.++...|++++|++.|+++++++|+++.++..+|.++
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l   93 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL   93 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            33455667777788888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          192 ELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       192 ~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ...|++++|+..++++++.+|++.. +..++.++.+.++..+
T Consensus        94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~  134 (765)
T PRK10049         94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWD  134 (765)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHH
Confidence            9999999999999999999999999 9999999988877543

>PLN02789 farnesyltranstransferase

Probab=99.08  E-value=2.5e-09  Score=95.53  Aligned_cols=101  Identities=13%  Similarity=0.151  Sum_probs=93.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRN--KEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~--~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .+++++..++++++.+|++..+|..++.++.+.|+.  ++++++++++++.+|.+..+|..++.++...|++++|++.++
T Consensus        87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~  166 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH  166 (320)
T ss_pred             hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            368999999999999999999999999999888874  788999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhc
Q 026642          206 DILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ++|+.+|.|..+|..++.+..+.
T Consensus       167 ~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        167 QLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHCCCchhHHHHHHHHHHhc
Confidence            99999999999999999887765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.08  E-value=3.2e-09  Score=95.70  Aligned_cols=108  Identities=18%  Similarity=0.199  Sum_probs=91.8

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKLSTAKR  202 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~~~A~~  202 (235)
                      ...+++++|++.|+++++.+|++.+++..+|.++.+.|++++|++.++++++.+|++ ..++..++.+|...|++++|..
T Consensus       191 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~  270 (389)
T PRK11788        191 LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE  270 (389)
T ss_pred             HhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence            345678999999999999999999999999999999999999999999999998877 4667888999999999999999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          203 LFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       203 ~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      .++++++.+|+...+ ..++.++.+.++.+
T Consensus       271 ~l~~~~~~~p~~~~~-~~la~~~~~~g~~~  299 (389)
T PRK11788        271 FLRRALEEYPGADLL-LALAQLLEEQEGPE  299 (389)
T ss_pred             HHHHHHHhCCCchHH-HHHHHHHHHhCCHH
Confidence            999999999987443 77777777766543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.08  E-value=4.1e-09  Score=102.83  Aligned_cols=111  Identities=14%  Similarity=-0.024  Sum_probs=100.0

Q ss_pred             cchHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 026642          114 RASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL  193 (235)
Q Consensus       114 ~~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~  193 (235)
                      .+...+.......+.+++|...+++++..+|++++++..+|.++.+.|++++|+.+|+++++.+|+++.++..+|.++..
T Consensus       121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~  200 (694)
T PRK15179        121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR  200 (694)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            34455666667777899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 026642          194 MGKLSTAKRLFKDILKERPLLLRALHDLGRY  224 (235)
Q Consensus       194 ~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~  224 (235)
                      .|+.++|...|+++++..-+-.+.|-++..-
T Consensus       201 ~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  231 (694)
T PRK15179        201 RGALWRARDVLQAGLDAIGDGARKLTRRLVD  231 (694)
T ss_pred             cCCHHHHHHHHHHHHHhhCcchHHHHHHHHH
Confidence            9999999999999999988877776555443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.06  E-value=1.4e-09  Score=75.31  Aligned_cols=84  Identities=21%  Similarity=0.243  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ++..+|..+...|++++|+..++++++..|++..++..+|.++...|++++|++.+++++...|.+..++..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             hhhc
Q 026642          229 LQIQ  232 (235)
Q Consensus       229 ~~~~  232 (235)
                      ++..
T Consensus        82 ~~~~   85 (100)
T cd00189          82 GKYE   85 (100)
T ss_pred             HhHH
Confidence            6643

>PLN02789 farnesyltranstransferase

Probab=99.06  E-value=3.5e-09  Score=94.65  Aligned_cols=106  Identities=10%  Similarity=0.019  Sum_probs=97.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--HHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG-RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL--STAKR  202 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g-~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~--~~A~~  202 (235)
                      .+..++|+..+.++++.+|++..+|..++.++...| ++++|+.+++++++.+|++..+|..++.++..+|+.  +++.+
T Consensus        50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~  129 (320)
T PLN02789         50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE  129 (320)
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence            345789999999999999999999999999999998 689999999999999999999999999999999984  78899


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          203 LFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       203 ~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      .++++++.+|+|..+|..++.++.+.++-
T Consensus       130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~  158 (320)
T PLN02789        130 FTRKILSLDAKNYHAWSHRQWVLRTLGGW  158 (320)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence            99999999999999999999998877653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.05  E-value=7.7e-09  Score=83.95  Aligned_cols=94  Identities=19%  Similarity=0.187  Sum_probs=84.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK-  196 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~-  196 (235)
                      ......+++++|+..|+++++.+|+.   ..++..+|.++...|++++|+.+++++++.+|++..++..+|.+|...|+ 
T Consensus        43 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  122 (172)
T PRK02603         43 MSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEK  122 (172)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh
Confidence            33444677999999999999887653   57999999999999999999999999999999999999999999999998 


Q ss_pred             -------------HHHHHHHHHHHHHHCCCC
Q 026642          197 -------------LSTAKRLFKDILKERPLL  214 (235)
Q Consensus       197 -------------~~~A~~~l~kaL~~~P~~  214 (235)
                                   +++|.+.+++++..+|++
T Consensus       123 ~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        123 AEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence                         688999999999999998

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.04  E-value=7e-09  Score=83.74  Aligned_cols=92  Identities=14%  Similarity=0.055  Sum_probs=80.1

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------H
Q 026642          124 DALMGKSEVEEMFEKLLEKEPR---NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE-------L  193 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~---~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~-------~  193 (235)
                      ...+++++|+..|++++...|+   .+.+|..+|.++...|++++|+++++++++++|.+...+..+|.++.       .
T Consensus        46 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~  125 (168)
T CHL00033         46 QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE  125 (168)
T ss_pred             HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHH
Confidence            3456689999999999988765   34689999999999999999999999999999999999999999999       7


Q ss_pred             cCCHH-------HHHHHHHHHHHHCCCCH
Q 026642          194 MGKLS-------TAKRLFKDILKERPLLL  215 (235)
Q Consensus       194 ~g~~~-------~A~~~l~kaL~~~P~~~  215 (235)
                      +|+++       +|+..|++++..+|++.
T Consensus       126 ~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        126 QGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            77766       77778888999999773

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=6.2e-09  Score=88.84  Aligned_cols=99  Identities=22%  Similarity=0.204  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      +.+++|++.|+..|+.||.|...+.....+.-.+|+.-+||+.+.+.++..++|.++|..++.+|...|+|++|.-+|++
T Consensus       100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE  179 (289)
T KOG3060|consen  100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE  179 (289)
T ss_pred             hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            34666666666666666666666555555555556555666666666666666666666666666666666666666666


Q ss_pred             HHHHCCCCHHHHHHHHHHH
Q 026642          207 ILKERPLLLRALHDLGRYV  225 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~  225 (235)
                      ++-..|.+...+..++.++
T Consensus       180 ~ll~~P~n~l~f~rlae~~  198 (289)
T KOG3060|consen  180 LLLIQPFNPLYFQRLAEVL  198 (289)
T ss_pred             HHHcCCCcHHHHHHHHHHH
Confidence            6666666655555555543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.03  E-value=9.4e-10  Score=75.26  Aligned_cols=65  Identities=31%  Similarity=0.454  Sum_probs=60.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC  190 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~  190 (235)
                      .+++++|++.|+++++.+|++.+++..+|.+|++.|++++|.+.+++++..+|+++.++..+|.+
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            45589999999999999999999999999999999999999999999999999999999888864

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.02  E-value=4.4e-09  Score=78.63  Aligned_cols=86  Identities=19%  Similarity=0.181  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHH
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRALHD  220 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~~  220 (235)
                      ++.++.+|..+.+.|++++|++.|+++++.+|++   ..+++.+|.++...|++++|++.|++++..+|++   ..+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            5788999999999999999999999999999987   5789999999999999999999999999999986   678999


Q ss_pred             HHHHHhhchhhc
Q 026642          221 LGRYVSMTLQIQ  232 (235)
Q Consensus       221 l~~~~~~~~~~~  232 (235)
                      ++.++.+.++..
T Consensus        82 ~~~~~~~~~~~~   93 (119)
T TIGR02795        82 LGMSLQELGDKE   93 (119)
T ss_pred             HHHHHHHhCChH
Confidence            999988776643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=6e-09  Score=88.93  Aligned_cols=101  Identities=22%  Similarity=0.173  Sum_probs=93.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK---LSTAKRLF  204 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~---~~~A~~~l  204 (235)
                      ...+|++.+.+.++.-++|.++|..++.+|+..|+|+.|.-||++++-++|-++.+...+|.+++.+|-   ++-|.++|
T Consensus       135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy  214 (289)
T KOG3060|consen  135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY  214 (289)
T ss_pred             CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            346899999999999999999999999999999999999999999999999999999999999999886   56799999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          205 KDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      .+++++.|.+.++++|+-++....
T Consensus       215 ~~alkl~~~~~ral~GI~lc~~~l  238 (289)
T KOG3060|consen  215 ERALKLNPKNLRALFGIYLCGSAL  238 (289)
T ss_pred             HHHHHhChHhHHHHHHHHHHHHHH
Confidence            999999999999999998886543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.02  E-value=2.4e-09  Score=96.96  Aligned_cols=83  Identities=18%  Similarity=0.159  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      +...|..++..|+|++|++.|+++++++|+++.+++.+|.+|..+|++++|+.+++++++++|++..+|+.+|.++.+.+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            55678899999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hhc
Q 026642          230 QIQ  232 (235)
Q Consensus       230 ~~~  232 (235)
                      +..
T Consensus        85 ~~~   87 (356)
T PLN03088         85 EYQ   87 (356)
T ss_pred             CHH
Confidence            754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.00  E-value=1.9e-09  Score=93.81  Aligned_cols=110  Identities=20%  Similarity=0.184  Sum_probs=84.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKE--PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~--P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ....++++++++.++++.+..  +.++..|..+|.++.+.|++++|+++|+++++++|++..++..++.++...|+++++
T Consensus       120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~  199 (280)
T PF13429_consen  120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEA  199 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHH
Confidence            344556788888888866544  678888888999999999999999999999999999999888888888888999988


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          201 KRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      .+.++...+..|++...+..+|.+|...++.+
T Consensus       200 ~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~  231 (280)
T PF13429_consen  200 REALKRLLKAAPDDPDLWDALAAAYLQLGRYE  231 (280)
T ss_dssp             HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHhccccccc
Confidence            88888888888888778888888887776644

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.00  E-value=8.6e-09  Score=83.66  Aligned_cols=88  Identities=15%  Similarity=0.116  Sum_probs=80.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH
Q 026642          143 EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALH  219 (235)
Q Consensus       143 ~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~  219 (235)
                      ++..+.++..+|..+...|++++|+.+|+++++.+|+.   ..++..+|.++...|++++|+..|++++..+|++..++.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            44677789999999999999999999999999987764   468999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchh
Q 026642          220 DLGRYVSMTLQ  230 (235)
Q Consensus       220 ~l~~~~~~~~~  230 (235)
                      .+|.++...++
T Consensus       111 ~lg~~~~~~g~  121 (172)
T PRK02603        111 NIAVIYHKRGE  121 (172)
T ss_pred             HHHHHHHHcCC
Confidence            99999887665

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.99  E-value=7.4e-09  Score=91.90  Aligned_cols=106  Identities=21%  Similarity=0.281  Sum_probs=95.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      +..+....+.+..|...|..+++.||++-.+++..|-+|+..|+-..|+..+++++++.|+...++..+|.++..+|+++
T Consensus        44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele  123 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE  123 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence            44555566678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCC---HHHHHHHHHH
Q 026642          199 TAKRLFKDILKERPLL---LRALHDLGRY  224 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~---~~a~~~l~~~  224 (235)
                      +|...|+++|+-+|.+   ..+...++..
T Consensus       124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~  152 (504)
T KOG0624|consen  124 QAEADFDQVLQHEPSNGLVLEAQSKLALI  152 (504)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHhH
Confidence            9999999999999966   4555555544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.99  E-value=2.5e-09  Score=98.18  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=66.9

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          142 KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEW---KLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       142 ~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a---~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                      .+|+++++|.++|.+|++.|+|++|+.+|+++++++|++.++   |+++|.+|..+|++++|+++|++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999999999865   9999999999999999999999999973

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=7e-09  Score=93.50  Aligned_cols=104  Identities=15%  Similarity=0.157  Sum_probs=89.5

Q ss_pred             CCHHHHHHHHHHHHHhCC----CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEP----RN-----------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCY  191 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P----~~-----------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~  191 (235)
                      +.+..|...|++++..=.    .+           ..++.+++.+|.+.++|.+|++..+++++++|+|+.+++++|+++
T Consensus       222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~  301 (397)
T KOG0543|consen  222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQAL  301 (397)
T ss_pred             chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence            357888889888776411    11           245788999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          192 ELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       192 ~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      ..+|+|+.|+..|+++++++|+|-.+...+..+-.+..+
T Consensus       302 l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  302 LALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE  340 (397)
T ss_pred             HhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998888888877655443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.98  E-value=2.4e-09  Score=72.76  Aligned_cols=58  Identities=26%  Similarity=0.400  Sum_probs=52.5

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV  181 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~  181 (235)
                      ...+++++|++.|+++++.+|+++++|..+|.++..+|++++|+.+|+++++++|+++
T Consensus         8 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    8 YQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            3345599999999999999999999999999999999999999999999999999975

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=3.8e-09  Score=97.73  Aligned_cols=101  Identities=12%  Similarity=0.042  Sum_probs=97.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .++++.|+..|.+++.++|.|.-.+.+....|...|+|++|++.-.+.++++|+.+.+|..+|.++..+|+|++|+..|.
T Consensus        15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~   94 (539)
T KOG0548|consen   15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYS   94 (539)
T ss_pred             cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHh
Q 026642          206 DILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      +.|+.+|+|...+-|++.++.
T Consensus        95 ~GL~~d~~n~~L~~gl~~a~~  115 (539)
T KOG0548|consen   95 EGLEKDPSNKQLKTGLAQAYL  115 (539)
T ss_pred             HHhhcCCchHHHHHhHHHhhh
Confidence            999999999999999999883

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.97  E-value=7.4e-09  Score=83.59  Aligned_cols=97  Identities=15%  Similarity=0.144  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKEPRN--VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~--~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      ..+...+...++.+..+  +..|..+|..+...|++++|+..|++++.+.|+.   +.++.++|.+|...|++++|++.|
T Consensus        16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~   95 (168)
T CHL00033         16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY   95 (168)
T ss_pred             ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34445555555555555  6778999999999999999999999999997763   468999999999999999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHh
Q 026642          205 KDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      ++++..+|.+...+.+++.++.
T Consensus        96 ~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         96 FQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHhCcCcHHHHHHHHHHHH
Confidence            9999999999999999999988

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=3.6e-09  Score=97.18  Aligned_cols=103  Identities=14%  Similarity=0.120  Sum_probs=89.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      +.++-...|.++...||+|++.|+-.|++++-.+++++|+..|+++++++|+++.++..++.+++.+++++++++.|+.+
T Consensus       375 ~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~  454 (606)
T KOG0547|consen  375 QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA  454 (606)
T ss_pred             ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHhhchh
Q 026642          208 LKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      .+..|+.++++--.+.++..+.+
T Consensus       455 kkkFP~~~Evy~~fAeiLtDqqq  477 (606)
T KOG0547|consen  455 KKKFPNCPEVYNLFAEILTDQQQ  477 (606)
T ss_pred             HHhCCCCchHHHHHHHHHhhHHh
Confidence            99999997777666666555444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=3e-09  Score=97.69  Aligned_cols=105  Identities=11%  Similarity=0.065  Sum_probs=98.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      ++..+|.+.|.++++.+|.+...|..++.+|++.++-++-+..++++.++||++++.|+.+|+++.-+++|++|+..|++
T Consensus       340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K  419 (606)
T KOG0547|consen  340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK  419 (606)
T ss_pred             CCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          207 ILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      ++.++|.++-++..++.+..+.+..
T Consensus       420 ai~L~pe~~~~~iQl~~a~Yr~~k~  444 (606)
T KOG0547|consen  420 AISLDPENAYAYIQLCCALYRQHKI  444 (606)
T ss_pred             HhhcChhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999998887776643

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.94  E-value=2.2e-08  Score=97.29  Aligned_cols=106  Identities=19%  Similarity=0.220  Sum_probs=97.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .+++++|++++.++++++|.++.+|..||.+|-++|+.+.+..+.-.|--++|.+.+.|..+|.....+|.++.|.-+|.
T Consensus       152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~  231 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS  231 (895)
T ss_pred             hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          206 DILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      ++++.+|.+...+++...+|.+.++.
T Consensus       232 rAI~~~p~n~~~~~ers~L~~~~G~~  257 (895)
T KOG2076|consen  232 RAIQANPSNWELIYERSSLYQKTGDL  257 (895)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhChH
Confidence            99999999999999999999888774

>PRK15331 chaperone protein SicA; Provisional

Probab=98.89  E-value=4.1e-08  Score=79.13  Aligned_cols=96  Identities=15%  Similarity=0.031  Sum_probs=88.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      +.-.....+++++|+..|+-....||.|.+.|..||.++...|+|++|+..|..+..++++++...+..|.||..+|+.+
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence            44455667789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCH
Q 026642          199 TAKRLFKDILKERPLLL  215 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~  215 (235)
                      +|+..|+.+++ .|.+.
T Consensus       123 ~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        123 KARQCFELVNE-RTEDE  138 (165)
T ss_pred             HHHHHHHHHHh-CcchH
Confidence            99999999988 56653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.86  E-value=7.6e-08  Score=88.16  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=102.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026642          117 ENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK  196 (235)
Q Consensus       117 ~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~  196 (235)
                      ..+..-....+.+++|++.+++..+.+|   ++...++++++..++..+|++.++++++.+|.+.+.+...|..+...|+
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~  249 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK  249 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence            3444455556678999999999999876   4677799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++.|++..+++++..|++...|+.|+.+|.+.+|.+.
T Consensus       250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~  286 (395)
T PF09295_consen  250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFEN  286 (395)
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHH
Confidence            9999999999999999999999999999999998654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.84  E-value=6.5e-08  Score=96.09  Aligned_cols=107  Identities=11%  Similarity=0.130  Sum_probs=91.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      .....+++++|++.|+++++.+|++++++..++.+|.+.|+.++|++.+++++..+|++..+ ..++.++..++++.+|+
T Consensus       111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL  189 (822)
T PRK14574        111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDAL  189 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHH
Confidence            44456778999999999999999999999999999999999999999999999999986555 66677777788887799


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          202 RLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       202 ~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      +.|+++++.+|++..++.++...+.+.+
T Consensus       190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~  217 (822)
T PRK14574        190 QASSEAVRLAPTSEEVLKNHLEILQRNR  217 (822)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999888887776654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.84  E-value=7.8e-08  Score=75.92  Aligned_cols=107  Identities=16%  Similarity=0.115  Sum_probs=88.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLST  199 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~  199 (235)
                      ..+..++.+.+++.++.+|+.   ..++..+|.+++..|++++|+..|+++++..|+.   ..+++.+|.++...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            455777888899999999998   5678888999999999999999999999987665   4578889999999999999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          200 AKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       200 A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      |+..++.+ ...+....++.-+|.+|.+.++..+
T Consensus       104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~  136 (145)
T PF09976_consen  104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDE  136 (145)
T ss_pred             HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHH
Confidence            99999763 3444447788889999998887654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.82  E-value=5.4e-08  Score=79.36  Aligned_cols=96  Identities=15%  Similarity=0.133  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR----------NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK--  196 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~----------~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~--  196 (235)
                      ++.|.+.++.....||.|++++..-|..+..+.+          +++|+.-|++++.++|+..++++.+|.+|...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            5789999999999999999999999998877533          5678889999999999999999999999988876  


Q ss_pred             ---------HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 026642          197 ---------LSTAKRLFKDILKERPLLLRALHDLGRY  224 (235)
Q Consensus       197 ---------~~~A~~~l~kaL~~~P~~~~a~~~l~~~  224 (235)
                               |++|.++|+++...+|++......|.+.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                     7899999999999999998777666655

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.80  E-value=2e-08  Score=68.84  Aligned_cols=56  Identities=29%  Similarity=0.346  Sum_probs=52.1

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG-RNKEALEFVKRLIDIEP  178 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g-~~~eAi~~l~kai~l~P  178 (235)
                      ....+++++|+..|+++++.+|+++.+|..+|.++...| ++++|+++++++++++|
T Consensus        13 ~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   13 YFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            344556999999999999999999999999999999999 79999999999999998

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.80  E-value=4.4e-08  Score=67.79  Aligned_cols=66  Identities=26%  Similarity=0.365  Sum_probs=61.2

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC  190 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~  190 (235)
                      ..+++++|++.++++++.+|+++.+|..+|.++.+.|++++|++.++++++.+|+++.+...++.+
T Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            456699999999999999999999999999999999999999999999999999999888777653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=3.5e-08  Score=90.37  Aligned_cols=110  Identities=21%  Similarity=0.135  Sum_probs=104.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      ++++++|.+.|+++|..|..+.++++++|..+-.+|+.++|+++|-++-.+=-++++.++.+|.+|..+.+...|+++|-
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~  582 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM  582 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999888777899999999999999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhchhhcccC
Q 026642          206 DILKERPLLLRALHDLGRYVSMTLQIQSLF  235 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~~~~~~~f  235 (235)
                      ++..+-|+++.++..|+.+|.+-+|....|
T Consensus       583 q~~slip~dp~ilskl~dlydqegdksqaf  612 (840)
T KOG2003|consen  583 QANSLIPNDPAILSKLADLYDQEGDKSQAF  612 (840)
T ss_pred             HhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence            999999999999999999999999987665

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.2e-07  Score=81.13  Aligned_cols=93  Identities=16%  Similarity=0.128  Sum_probs=84.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG---RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g---~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      .....++.+.|...|.+++++.|+|++.+..+|.++..+.   ...+|...+++++++||+++.+.+.+|..+...|+|.
T Consensus       165 ~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~  244 (287)
T COG4235         165 AYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYA  244 (287)
T ss_pred             HHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHH
Confidence            3334555688999999999999999999999999887654   3678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCC
Q 026642          199 TAKRLFKDILKERPLL  214 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~  214 (235)
                      +|+..++..+...|.+
T Consensus       245 ~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         245 EAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHHHHHHhcCCCC
Confidence            9999999999999887

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.78  E-value=2.7e-07  Score=72.80  Aligned_cols=98  Identities=18%  Similarity=0.166  Sum_probs=85.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPR---NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV---EWKLLQALCYEL  193 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~---~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~---~a~~~lA~~~~~  193 (235)
                      .++..+.+++++|++.|+.+....|.   ...+...++++|++.|++++|+..+++-|+++|+++   .+++.+|.+++.
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~   96 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE   96 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence            34455567899999999999998765   457899999999999999999999999999999874   688899999999


Q ss_pred             cCC---------------HHHHHHHHHHHHHHCCCCHHH
Q 026642          194 MGK---------------LSTAKRLFKDILKERPLLLRA  217 (235)
Q Consensus       194 ~g~---------------~~~A~~~l~kaL~~~P~~~~a  217 (235)
                      +.+               ..+|...|++++...|++..+
T Consensus        97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            987               889999999999999998544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.77  E-value=1.1e-07  Score=82.83  Aligned_cols=86  Identities=13%  Similarity=0.102  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHH
Q 026642          147 VEALKVVMQGN-MRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRALH  219 (235)
Q Consensus       147 ~~a~~~la~~~-~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~  219 (235)
                      ...++..+..+ ++.|+|++|+..|++.++..|++   +.+++.+|.+|+..|++++|+..|+++++.+|++   ..+++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46677777765 67899999999999999999998   5799999999999999999999999999999987   88999


Q ss_pred             HHHHHHhhchhhc
Q 026642          220 DLGRYVSMTLQIQ  232 (235)
Q Consensus       220 ~l~~~~~~~~~~~  232 (235)
                      .+|.++...++..
T Consensus       222 klg~~~~~~g~~~  234 (263)
T PRK10803        222 KVGVIMQDKGDTA  234 (263)
T ss_pred             HHHHHHHHcCCHH
Confidence            9999998777644

>TIGR00540 hemY_coli hemY protein

Probab=98.77  E-value=1.1e-07  Score=87.42  Aligned_cols=118  Identities=11%  Similarity=-0.029  Sum_probs=97.5

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHH
Q 026642          115 ASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEAL--KVVMQGNMRRGRNKEALEFVKRLIDIEPNEV--EWKLLQALC  190 (235)
Q Consensus       115 ~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~--~~la~~~~~~g~~~eAi~~l~kai~l~P~~~--~a~~~lA~~  190 (235)
                      ....+.......++.++|++.++++++.+|++....  ..........++.+.+++.++++++.+|+++  .....+|.+
T Consensus       265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l  344 (409)
T TIGR00540       265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL  344 (409)
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence            334455667777889999999999999999998643  3344444556889999999999999999999  888899999


Q ss_pred             HHHcCCHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          191 YELMGKLSTAKRLFK--DILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       191 ~~~~g~~~~A~~~l~--kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++.+|++++|.++|+  ++++.+|++.. +..++.++.+.++.++
T Consensus       345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~  388 (409)
T TIGR00540       345 LMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAE  388 (409)
T ss_pred             HHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHH
Confidence            999999999999999  68889998866 4488999888877543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=1.5e-07  Score=78.27  Aligned_cols=99  Identities=20%  Similarity=0.203  Sum_probs=87.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVE-----ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~-----a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      .+++++|...|..+|+.=|....     .+.+.|.+++++++++.||+...++|+++|.+..+...+|.+|..+.+|++|
T Consensus       108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eea  187 (271)
T KOG4234|consen  108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEA  187 (271)
T ss_pred             cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHH
Confidence            56789999999999998776543     4566788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHH
Q 026642          201 KRLFKDILKERPLLLRALHDLGRY  224 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~a~~~l~~~  224 (235)
                      +..|.++++.+|..-.+..+...+
T Consensus       188 leDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  188 LEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHHHHHHhCcchHHHHHHHHhc
Confidence            999999999999986666555443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.75  E-value=3.3e-08  Score=79.69  Aligned_cols=92  Identities=14%  Similarity=0.068  Sum_probs=85.8

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 026642          141 EKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHD  220 (235)
Q Consensus       141 ~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~  220 (235)
                      ...++..+..+..|.-++.+|++++|...|+-+...||.+.++|..+|.|+..+|+|++|++.|..+..+++++++..+.
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence            34566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhc
Q 026642          221 LGRYVSMTLQIQ  232 (235)
Q Consensus       221 l~~~~~~~~~~~  232 (235)
                      .|.+|...++..
T Consensus       111 agqC~l~l~~~~  122 (165)
T PRK15331        111 TGQCQLLMRKAA  122 (165)
T ss_pred             HHHHHHHhCCHH
Confidence            999998887754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.75  E-value=1e-07  Score=84.98  Aligned_cols=91  Identities=20%  Similarity=0.160  Sum_probs=73.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV----EWKLLQALCYELMGKL  197 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~----~a~~~lA~~~~~~g~~  197 (235)
                      .....+++++|++.++++++.+|+++.++..+|.++...|++++|+.+++++++..|.++    ..+..+|.++...|++
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~  202 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY  202 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence            344556688888888888888888888888888888888888888888888888876432    3456788888888888


Q ss_pred             HHHHHHHHHHHHHCC
Q 026642          198 STAKRLFKDILKERP  212 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P  212 (235)
                      ++|...|++++...|
T Consensus       203 ~~A~~~~~~~~~~~~  217 (355)
T cd05804         203 EAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHhcccc
Confidence            888888888877666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.74  E-value=1.4e-07  Score=74.44  Aligned_cols=90  Identities=20%  Similarity=0.165  Sum_probs=76.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELM  194 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~  194 (235)
                      .+.......+++++|+..|+++++..|++   ..++..++.+++..|++++|+..++. +.-.+..+.++..+|.+|...
T Consensus        53 ~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~  131 (145)
T PF09976_consen   53 QLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQ  131 (145)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHC
Confidence            34455566778999999999999987655   35888899999999999999999977 344455678888999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 026642          195 GKLSTAKRLFKDIL  208 (235)
Q Consensus       195 g~~~~A~~~l~kaL  208 (235)
                      |++++|+..|+++|
T Consensus       132 g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  132 GDYDEARAAYQKAL  145 (145)
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999999875

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.74  E-value=2.7e-07  Score=79.69  Aligned_cols=100  Identities=16%  Similarity=0.147  Sum_probs=89.6

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLS  198 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~  198 (235)
                      ..+++.+|++.|...++..|++   ++|++.||.+++.+|+|++|...|..+++-.|+.   +++++.+|++...+|+.+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d  232 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence            3556899999999999999885   5899999999999999999999999999998875   688999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHH
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRY  224 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~  224 (235)
                      +|...|+++++.+|+...+......+
T Consensus       233 ~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         233 EACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            99999999999999997766554433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.73  E-value=1.8e-07  Score=82.40  Aligned_cols=116  Identities=13%  Similarity=0.094  Sum_probs=96.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKEPRN-----VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE  192 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~-----~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~  192 (235)
                      .+..-.....+|++|++..++..+..+.+     +..+-.|+..+....+.+.|...+.++++.||+++++-+.+|.++.
T Consensus       146 qLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~  225 (389)
T COG2956         146 QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVEL  225 (389)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence            34444445566899999998888876653     2356677778888899999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHhhchhhcc
Q 026642          193 LMGKLSTAKRLFKDILKERPLL-LRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       193 ~~g~~~~A~~~l~kaL~~~P~~-~~a~~~l~~~~~~~~~~~~  233 (235)
                      ..|+|++|++.++.+++.||+. ..++-.|..+|++.++.++
T Consensus       226 ~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         226 AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence            9999999999999999999999 6788888888888877543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.72  E-value=1.1e-07  Score=90.17  Aligned_cols=103  Identities=12%  Similarity=0.061  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR--------GRNKEALEFVKRLIDI--EPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~--------g~~~eAi~~l~kai~l--~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      .++|+++|+++++.||+++.+|..++.+|...        ++.+++.+..++++.+  +|.++.++..+|.++...|+++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            46899999999999999999999888877553        1234555555665553  5666677777777777777777


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +|...+++++.++| +..+|..+|.++...++.+
T Consensus       438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~  470 (517)
T PRK10153        438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNR  470 (517)
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHH
Confidence            77777777777777 3667777777666666543

>TIGR00540 hemY_coli hemY protein

Probab=98.71  E-value=3.7e-07  Score=84.05  Aligned_cols=107  Identities=13%  Similarity=0.085  Sum_probs=98.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-EWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      ++++++|++.+.++.+..|+....+...|.++.++|++++|.++++++.+..|++. .+....+.++...|++++|.+.+
T Consensus        97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l  176 (409)
T TIGR00540        97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV  176 (409)
T ss_pred             CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            56789999999999999999888899999999999999999999999999999885 57777899999999999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          205 KDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +++++.+|++..++.-++.++.+.++-+
T Consensus       177 ~~l~~~~P~~~~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       177 DKLLEMAPRHKEVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999998888754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.70  E-value=2e-08  Score=71.86  Aligned_cols=74  Identities=22%  Similarity=0.338  Sum_probs=64.4

Q ss_pred             HcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          159 RRGRNKEALEFVKRLIDIEPN--EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       159 ~~g~~~eAi~~l~kai~l~P~--~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++|+|++|+..++++++.+|.  +..+++.+|.||+.+|+|++|+..+++ ++.++.+...++.+|.++.+.++.++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e   76 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE   76 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence            478999999999999999995  466788899999999999999999999 88999998888888999988877543

>PRK11906 transcriptional regulator; Provisional

Probab=98.70  E-value=1.7e-07  Score=86.43  Aligned_cols=101  Identities=14%  Similarity=0.110  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642          130 SEVEEMFEKLL---EKEPRNVEALKVVMQGNMRR---------GRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL  197 (235)
Q Consensus       130 ~eA~~~~e~aL---~~~P~~~~a~~~la~~~~~~---------g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~  197 (235)
                      +.|..+|.+++   +.||+.+.++..++.+++..         .+-.+|.+..++++++||+|+.++..+|.++...|++
T Consensus       275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~  354 (458)
T PRK11906        275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA  354 (458)
T ss_pred             HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence            45666666666   66666666666666666542         2234566666666666766666666666666666666


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          198 STAKRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +.|...|++++.++|+.+.+|+..|.+..-.++
T Consensus       355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~  387 (458)
T PRK11906        355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEK  387 (458)
T ss_pred             hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence            666666777766777666666666655444443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.70  E-value=1.6e-07  Score=93.27  Aligned_cols=115  Identities=13%  Similarity=0.109  Sum_probs=100.1

Q ss_pred             cchHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------------
Q 026642          114 RASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV------------  181 (235)
Q Consensus       114 ~~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~------------  181 (235)
                      .+...+.......+++++|++..+.+++.+|+.+.+|+.+|.++.+.+++++|...  +++...+.+.            
T Consensus        32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i  109 (906)
T PRK14720         32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI  109 (906)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence            44455666666778899999999999999999999999999999999888877666  6666555555            


Q ss_pred             -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          182 -------EWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       182 -------~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                             .+++.+|.||..+|++++|.+.|+++|+.+|+|+.++.++|..|... +.
T Consensus       110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720        110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH
Confidence                   99999999999999999999999999999999999999999998877 53

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.69  E-value=1.3e-07  Score=90.72  Aligned_cols=87  Identities=16%  Similarity=0.206  Sum_probs=69.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALE--FVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~--~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      ..++|.+.|..++..||+++.....+|.++.+.|+-.-|.+  .+..++++||.+.+||+.+|.++...|+.++|.++|+
T Consensus       699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~  778 (799)
T KOG4162|consen  699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ  778 (799)
T ss_pred             hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence            46778888888888888888888888888888887666666  7888888888888888888888888888888888888


Q ss_pred             HHHHHCCCC
Q 026642          206 DILKERPLL  214 (235)
Q Consensus       206 kaL~~~P~~  214 (235)
                      .++++++.+
T Consensus       779 aa~qLe~S~  787 (799)
T KOG4162|consen  779 AALQLEESN  787 (799)
T ss_pred             HHHhhccCC
Confidence            888877766

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.68  E-value=2.7e-08  Score=69.92  Aligned_cols=66  Identities=21%  Similarity=0.308  Sum_probs=56.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642          145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE---P-N---EVEWKLLQALCYELMGKLSTAKRLFKDILKE  210 (235)
Q Consensus       145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~---P-~---~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~  210 (235)
                      +-+.++..+|.+|..+|+|++|+++|++++++.   + +   -+..+.++|.++..+|++++|++.+++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            346789999999999999999999999999752   2 2   2567889999999999999999999999875

...

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.68  E-value=3.4e-07  Score=84.06  Aligned_cols=115  Identities=10%  Similarity=0.036  Sum_probs=91.4

Q ss_pred             cchHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 026642          114 RASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL  193 (235)
Q Consensus       114 ~~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~  193 (235)
                      .....+.......++.++|.+.++++++. +.+.+....++.+  ..++.+++++.+++.++.+|+++..++.+|.++..
T Consensus       264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~  340 (398)
T PRK10747        264 ALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK  340 (398)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            34455666777778889999999999994 4455555444444  55899999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          194 MGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       194 ~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      .|++++|.+.|+++++.+|++.. +..++.++.+.++.+
T Consensus       341 ~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~  378 (398)
T PRK10747        341 HGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPE  378 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHH
Confidence            99999999999999999998644 456777777766644

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.67  E-value=8.4e-08  Score=84.83  Aligned_cols=104  Identities=17%  Similarity=0.127  Sum_probs=93.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      ...+.|...|.+.++.-|.|+..+...++++...+++++|+++|+.+++++|.++++....|.-|++.|+.|-|..+|++
T Consensus       270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR  349 (478)
T KOG1129|consen  270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR  349 (478)
T ss_pred             ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHhhchh
Q 026642          207 ILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +|++--.+++.+.++|+++.-..+
T Consensus       350 iLqmG~~speLf~NigLCC~yaqQ  373 (478)
T KOG1129|consen  350 ILQMGAQSPELFCNIGLCCLYAQQ  373 (478)
T ss_pred             HHHhcCCChHHHhhHHHHHHhhcc
Confidence            999999999999999998665443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.67  E-value=2.3e-07  Score=82.74  Aligned_cols=103  Identities=13%  Similarity=0.123  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642          131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKE  210 (235)
Q Consensus       131 eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~  210 (235)
                      .+.+.++.....+|....++..+|.++..+|++++|+..++++++++|+++.++..+|.+|+..|++++|+..+++++..
T Consensus        98 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804          98 HVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             hHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence            33333333334455566666677788899999999999999999999999999999999999999999999999999998


Q ss_pred             CCCC----HHHHHHHHHHHhhchhhcc
Q 026642          211 RPLL----LRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       211 ~P~~----~~a~~~l~~~~~~~~~~~~  233 (235)
                      .|.+    ...+..++.++...++.++
T Consensus       178 ~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         178 WDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             cCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence            8744    3456678888888887654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11906 transcriptional regulator; Provisional

Probab=98.67  E-value=2.8e-07  Score=84.91  Aligned_cols=87  Identities=11%  Similarity=0.032  Sum_probs=84.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      +..+|.+..+++++.||+|+.++..+|.+....|+++.|+..+++++.++|+.+.+|+..|.+....|+.++|.+.++++
T Consensus       319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a  398 (458)
T PRK11906        319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS  398 (458)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCC
Q 026642          208 LKERPLL  214 (235)
Q Consensus       208 L~~~P~~  214 (235)
                      ++++|.-
T Consensus       399 lrLsP~~  405 (458)
T PRK11906        399 LQLEPRR  405 (458)
T ss_pred             hccCchh
Confidence            9999988

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.66  E-value=4e-07  Score=80.30  Aligned_cols=102  Identities=19%  Similarity=0.267  Sum_probs=88.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ......+.++|+..+.++++.||+++.+-..+|++++..|+|+.|++.++++++.||++ ++....+..||...|+.++.
T Consensus       189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~  268 (389)
T COG2956         189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG  268 (389)
T ss_pred             HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            33344556889999999999999999999999999999999999999999999999998 56788899999999999999


Q ss_pred             HHHHHHHHHHCCCC--HHHHHHHHH
Q 026642          201 KRLFKDILKERPLL--LRALHDLGR  223 (235)
Q Consensus       201 ~~~l~kaL~~~P~~--~~a~~~l~~  223 (235)
                      ...+.++.+..++.  ..++..+..
T Consensus       269 ~~fL~~~~~~~~g~~~~l~l~~lie  293 (389)
T COG2956         269 LNFLRRAMETNTGADAELMLADLIE  293 (389)
T ss_pred             HHHHHHHHHccCCccHHHHHHHHHH
Confidence            99999999988876  334444433

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.65  E-value=7.9e-08  Score=85.48  Aligned_cols=98  Identities=15%  Similarity=0.068  Sum_probs=90.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      +.|++|+.+|.+.+..+|.|+..+.+.+..|++.++|..|....+.++.+|-.+..+|..+|.+-..+|...+|.+.++.
T Consensus       111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~  190 (536)
T KOG4648|consen  111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCET  190 (536)
T ss_pred             cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHH
Confidence            44999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCHHHHHHHHHH
Q 026642          207 ILKERPLLLRALHDLGRY  224 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~  224 (235)
                      +|+++|++.+.--.++.+
T Consensus       191 vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  191 VLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHhhCcccHHHHHHHHHh
Confidence            999999986655444433

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=3.2e-07  Score=85.65  Aligned_cols=97  Identities=20%  Similarity=0.272  Sum_probs=83.8

Q ss_pred             CHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          128 GKSEVEEMFEKLLEK----EPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~----~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ++.+|..+|+.+++.    .+..   ...+.+||.+|-+++++++||.+|++++.+.|.++.++...|.+|..+|+++.|
T Consensus       429 ~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~A  508 (611)
T KOG1173|consen  429 EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKA  508 (611)
T ss_pred             hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHH
Confidence            478999999999842    2222   235899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCC--HHHHHHHHHH
Q 026642          201 KRLFKDILKERPLL--LRALHDLGRY  224 (235)
Q Consensus       201 ~~~l~kaL~~~P~~--~~a~~~l~~~  224 (235)
                      ++.|.++|.++|++  +..+.++++.
T Consensus       509 id~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  509 IDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            99999999999999  4555555444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.63  E-value=3.8e-07  Score=86.53  Aligned_cols=86  Identities=16%  Similarity=0.220  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          130 SEVEEMFEKLLE--KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       130 ~eA~~~~e~aL~--~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      .++.+..++++.  .+|.++.++..+|..+...|++++|...++++++++| +..+|..+|.++...|++++|++.|+++
T Consensus       401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344555556555  3888899999999999999999999999999999999 4889999999999999999999999999


Q ss_pred             HHHCCCCHH
Q 026642          208 LKERPLLLR  216 (235)
Q Consensus       208 L~~~P~~~~  216 (235)
                      +.++|.+..
T Consensus       480 ~~L~P~~pt  488 (517)
T PRK10153        480 FNLRPGENT  488 (517)
T ss_pred             HhcCCCCch
Confidence            999999853

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1.7e-07  Score=87.50  Aligned_cols=107  Identities=13%  Similarity=0.106  Sum_probs=95.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC---CHHHHHHHHHHHHHcCCHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI----EPN---EVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l----~P~---~~~a~~~lA~~~~~~g~~~  198 (235)
                      ..+..-|.+.|.+++.+.|+|+-.+..+|.+.+..+.|.+|+.+++++++.    .++   ....+.++|.+|.+.++++
T Consensus       393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~  472 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE  472 (611)
T ss_pred             hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence            345688999999999999999999999999999999999999999999942    222   3345889999999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +|+..|+++|.+.|++..+|-.+|.+|+..+..+
T Consensus       473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld  506 (611)
T KOG1173|consen  473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD  506 (611)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence            9999999999999999999999999998877643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.62  E-value=3.8e-07  Score=89.52  Aligned_cols=111  Identities=15%  Similarity=0.148  Sum_probs=75.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKEP---RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYEL  193 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P---~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~  193 (235)
                      .+..-....+++..+...++.++...-   --.+.++.+|+.|..+|+|++|..+|.++++.++++ .-.++.+|++|+.
T Consensus       275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~  354 (1018)
T KOG2002|consen  275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK  354 (1018)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence            344444445557777777766666542   233457777777777777777777777777777776 6666677777777


Q ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          194 MGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       194 ~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      .|+++.|+.+|+++++..|++..++.-+|.+|...
T Consensus       355 ~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  355 RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence            77777777777777777777777777777776655

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.61  E-value=6.4e-07  Score=69.02  Aligned_cols=90  Identities=20%  Similarity=0.265  Sum_probs=77.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcC
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN---EVEWKLLQALCYELMG  195 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~---~~~a~~~lA~~~~~~g  195 (235)
                      ..+..++.++|+..|+++++.....   .+++..+|..+...|++++|+..+++++...|+   +......+|.++...|
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g   89 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG   89 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence            3445567899999999999975444   568999999999999999999999999999888   7788888999999999


Q ss_pred             CHHHHHHHHHHHHHHC
Q 026642          196 KLSTAKRLFKDILKER  211 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~  211 (235)
                      ++++|+..+-.++...
T Consensus        90 r~~eAl~~~l~~la~~  105 (120)
T PF12688_consen   90 RPKEALEWLLEALAET  105 (120)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999998887633

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.61  E-value=3.5e-07  Score=87.91  Aligned_cols=105  Identities=18%  Similarity=0.123  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR--LFKD  206 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~--~l~k  206 (235)
                      .++|.-++.++-..+|-.+..|+..|..+...|+++||.+.|..++.+||+++.....+|.++...|+..-|.+  .+..
T Consensus       666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~d  745 (799)
T KOG4162|consen  666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSD  745 (799)
T ss_pred             chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence            46677788888899999999999999999999999999999999999999999999999999999999888888  9999


Q ss_pred             HHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          207 ILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++++||.+..+|+++|.++.+.||.+.
T Consensus       746 alr~dp~n~eaW~~LG~v~k~~Gd~~~  772 (799)
T KOG4162|consen  746 ALRLDPLNHEAWYYLGEVFKKLGDSKQ  772 (799)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHccchHH
Confidence            999999999999999999999998653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.59  E-value=2.2e-06  Score=66.06  Aligned_cols=84  Identities=18%  Similarity=0.087  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHH
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPL---LLRALHDL  221 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~---~~~a~~~l  221 (235)
                      ++++.+|.++-..|+.++|+..|+++++...+.   .++++.+|..|..+|++++|+..+++.+...|+   +..+..-+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578999999999999999999999999976554   578999999999999999999999999999998   55555556


Q ss_pred             HHHHhhchhh
Q 026642          222 GRYVSMTLQI  231 (235)
Q Consensus       222 ~~~~~~~~~~  231 (235)
                      ++++...+..
T Consensus        82 Al~L~~~gr~   91 (120)
T PF12688_consen   82 ALALYNLGRP   91 (120)
T ss_pred             HHHHHHCCCH
Confidence            6665554443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.59  E-value=8.8e-07  Score=74.03  Aligned_cols=85  Identities=26%  Similarity=0.290  Sum_probs=71.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHH
Q 026642          145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRAL  218 (235)
Q Consensus       145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~  218 (235)
                      .+++.++..|..+++.|+|++|++.|++++...|+.   +.+.+.+|.+++..|++++|+..+++.++..|++   ..++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            457889999999999999999999999999998875   5789999999999999999999999999999998   6788


Q ss_pred             HHHHHHHhhch
Q 026642          219 HDLGRYVSMTL  229 (235)
Q Consensus       219 ~~l~~~~~~~~  229 (235)
                      +.+|+++.+..
T Consensus        83 Y~~g~~~~~~~   93 (203)
T PF13525_consen   83 YMLGLSYYKQI   93 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99998876654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.58  E-value=1.8e-06  Score=79.58  Aligned_cols=89  Identities=19%  Similarity=0.155  Sum_probs=81.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .+...+|++.+++++..+|+..-.+..+|++|++.|++++|+..+++.+..+|+++.+|..+|++|..+|+..+|...+.
T Consensus       353 ~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A  432 (484)
T COG4783         353 ANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA  432 (484)
T ss_pred             cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence            44578999999999999999999999999999999999999999999999999999999999999999999888888887


Q ss_pred             HHHHHCCCC
Q 026642          206 DILKERPLL  214 (235)
Q Consensus       206 kaL~~~P~~  214 (235)
                      +.+.+.-+.
T Consensus       433 E~~~~~G~~  441 (484)
T COG4783         433 EGYALAGRL  441 (484)
T ss_pred             HHHHhCCCH
Confidence            777766554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.58  E-value=1.3e-07  Score=59.62  Aligned_cols=42  Identities=21%  Similarity=0.276  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQAL  189 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~  189 (235)
                      ++|..+|..|.+.|++++|++.|+++++.+|+++++|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456666666666666666666666666666666666666654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.57  E-value=3.6e-07  Score=89.65  Aligned_cols=103  Identities=20%  Similarity=0.263  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ++.|.+.|.-+++..|+|+-++.+.|.+.+..|+|-.|+.+|++++..+|.. ++..+..|.|+..+|+.+.|+..|+++
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra  225 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA  225 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999986 688899999999999999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHhhchhh
Q 026642          208 LKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      +++||+++.++.+||.+-....+.
T Consensus       226 lqLdp~~v~alv~L~~~~l~~~d~  249 (1018)
T KOG2002|consen  226 LQLDPTCVSALVALGEVDLNFNDS  249 (1018)
T ss_pred             HhcChhhHHHHHHHHHHHHHccch
Confidence            999999999999999886655543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.57  E-value=1e-06  Score=75.90  Aligned_cols=84  Identities=15%  Similarity=0.061  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHH
Q 026642          145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWK---LLQALCYELMGKLSTAKRLFKDILKERPLL---LRAL  218 (235)
Q Consensus       145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~---~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~  218 (235)
                      .+++.++..|..+++.|+|++|++.|++++...|+.+.+.   +.+|.+|+..|++++|+..+++.++.+|++   ..++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            4567788889999999999999999999999999986554   889999999999999999999999999999   6788


Q ss_pred             HHHHHHHhhc
Q 026642          219 HDLGRYVSMT  228 (235)
Q Consensus       219 ~~l~~~~~~~  228 (235)
                      +.+|+++...
T Consensus       110 Y~~g~~~~~~  119 (243)
T PRK10866        110 YMRGLTNMAL  119 (243)
T ss_pred             HHHHHhhhhc
Confidence            8888875333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.56  E-value=1.5e-06  Score=68.60  Aligned_cols=86  Identities=17%  Similarity=0.120  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHH
Q 026642          145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRAL  218 (235)
Q Consensus       145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~  218 (235)
                      ..+..++.-|...++.|+|++|++.++.+....|..   ..+.+.+|.+|+..|+|++|+..+++.++++|++   ..++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            356788889999999999999999999999998875   5789999999999999999999999999999999   6788


Q ss_pred             HHHHHHHhhchh
Q 026642          219 HDLGRYVSMTLQ  230 (235)
Q Consensus       219 ~~l~~~~~~~~~  230 (235)
                      +..|+.+.+..+
T Consensus        88 Y~~gL~~~~~~~   99 (142)
T PF13512_consen   88 YMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHhh
Confidence            888888776544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.55  E-value=3.4e-07  Score=76.97  Aligned_cols=86  Identities=14%  Similarity=0.135  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK  209 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~  209 (235)
                      .-|.-.|.++|.++|+-+++.+.||.-+...|+|+.|.+.++.++++||.+..+..++|..+++-|+|.-|.+.+.+..+
T Consensus        82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ  161 (297)
T COG4785          82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ  161 (297)
T ss_pred             HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence            44677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCCH
Q 026642          210 ERPLLL  215 (235)
Q Consensus       210 ~~P~~~  215 (235)
                      .||+++
T Consensus       162 ~D~~DP  167 (297)
T COG4785         162 DDPNDP  167 (297)
T ss_pred             cCCCCh
Confidence            999994

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.54  E-value=1.9e-06  Score=79.16  Aligned_cols=106  Identities=11%  Similarity=0.047  Sum_probs=81.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHcCCHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVV-MQGNMRRGRNKEALEFVKRLIDIEPNEVEWK-LLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~l-a~~~~~~g~~~eAi~~l~kai~l~P~~~~a~-~~lA~~~~~~g~~~~A~~~  203 (235)
                      ++++++|++.+.+..+..+ ++..++.+ +....+.|++++|.++++++.+.+|++..+. ...+.++...|++++|.+.
T Consensus        97 eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~  175 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG  175 (398)
T ss_pred             CCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4677888876666544432 34444444 5555889999999999999999888875444 3458899999999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          204 FKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++++++.+|++..++..++.+|.+.++-+
T Consensus       176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~  204 (398)
T PRK10747        176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWS  204 (398)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence            99999999999999988888888877643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.53  E-value=1.4e-06  Score=79.93  Aligned_cols=83  Identities=20%  Similarity=0.335  Sum_probs=78.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .++..+|++.++++++.+|.+.+.+...+..+++.|+++.|++..++++++.|++-+.|+.||.+|..+|++++|+..++
T Consensus       213 ~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  213 MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHH
Q 026642          206 DIL  208 (235)
Q Consensus       206 kaL  208 (235)
                      .+-
T Consensus       293 s~P  295 (395)
T PF09295_consen  293 SCP  295 (395)
T ss_pred             cCc
Confidence            553

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.53  E-value=1.4e-06  Score=67.90  Aligned_cols=90  Identities=18%  Similarity=0.234  Sum_probs=81.2

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV----EWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~----~a~~~lA~~~~~~g~~~~A  200 (235)
                      +.++.++|++.|.+++..-|..+.+|.+.++.+--+|+-++|++.+++++++..+..    .++..+|.+|...|+.++|
T Consensus        55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A  134 (175)
T KOG4555|consen   55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA  134 (175)
T ss_pred             hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence            345689999999999999999999999999999999999999999999999986653    5688899999999999999


Q ss_pred             HHHHHHHHHHCCCC
Q 026642          201 KRLFKDILKERPLL  214 (235)
Q Consensus       201 ~~~l~kaL~~~P~~  214 (235)
                      ...|+.+-++-..+
T Consensus       135 R~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  135 RADFEAAAQLGSKF  148 (175)
T ss_pred             HHhHHHHHHhCCHH
Confidence            99999987776554

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.52  E-value=2.7e-07  Score=81.68  Aligned_cols=105  Identities=20%  Similarity=0.317  Sum_probs=76.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------------------
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE------------------------------  177 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~------------------------------  177 (235)
                      ++++|.+.|+.+++.+|.|+|+...+|-.|+-.++.|-|+.+|.+++...                              
T Consensus       305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA  384 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA  384 (478)
T ss_pred             hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence            36778888888888888877776666655555555555555555555442                              


Q ss_pred             ------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          178 ------PNE-VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       178 ------P~~-~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                            |+. .+.|+++|.+....||+..|..+|+-+|..|+++.+++.+|+.+-++.++-.
T Consensus       385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~  446 (478)
T KOG1129|consen  385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDIL  446 (478)
T ss_pred             HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchH
Confidence                  222 5778888888888888888888888888888888888888888888877643

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.49  E-value=9.5e-07  Score=83.70  Aligned_cols=109  Identities=14%  Similarity=0.059  Sum_probs=98.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR  202 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~  202 (235)
                      .+.-++.++|......++..|+.+.-.|..+|.++-..++|++||+||..|++++|+|.+.|..++.+..++|+++....
T Consensus        51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~  130 (700)
T KOG1156|consen   51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE  130 (700)
T ss_pred             hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence            34445678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          203 LFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       203 ~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      .-.+.+++.|.+-..|.++++.++-.++.
T Consensus       131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y  159 (700)
T KOG1156|consen  131 TRNQLLQLRPSQRASWIGFAVAQHLLGEY  159 (700)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888776654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.49  E-value=3e-07  Score=88.02  Aligned_cols=105  Identities=17%  Similarity=0.118  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      .+++++.+.++..++++|-..+.|+.+|.+..+.++++.|.++|.+.+.++|++.++|++++.+|..+|+-.+|...+.+
T Consensus       499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E  578 (777)
T KOG1128|consen  499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE  578 (777)
T ss_pred             hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence            34677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          207 ILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      +++.+-++...|.|.-.+..+.+..
T Consensus       579 AlKcn~~~w~iWENymlvsvdvge~  603 (777)
T KOG1128|consen  579 ALKCNYQHWQIWENYMLVSVDVGEF  603 (777)
T ss_pred             HhhcCCCCCeeeechhhhhhhcccH
Confidence            8888866677776666665555443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=4.6e-07  Score=82.09  Aligned_cols=87  Identities=18%  Similarity=0.192  Sum_probs=56.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNV----EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR  202 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~----~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~  202 (235)
                      +.+.+|.+.|.++|..||++.    ..|.+++.++.+.|+.++|+...+.++++|+.+..++..+|.|+..+++|++|++
T Consensus       263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~  342 (486)
T KOG0550|consen  263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE  342 (486)
T ss_pred             cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666666543    3455556666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHCCC
Q 026642          203 LFKDILKERPL  213 (235)
Q Consensus       203 ~l~kaL~~~P~  213 (235)
                      +|+++++.+-+
T Consensus       343 d~~~a~q~~~s  353 (486)
T KOG0550|consen  343 DYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHhhccc
Confidence            66666665544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=9.1e-07  Score=80.21  Aligned_cols=91  Identities=19%  Similarity=0.204  Sum_probs=82.2

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Q 026642          142 KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE----VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRA  217 (235)
Q Consensus       142 ~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~----~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a  217 (235)
                      ..|+-.+.|..-|.-.++.|+|..|.++|..+|.+||++    +..|.++|.+...+|+.++|+...+.++++|+..+.+
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika  323 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA  323 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence            345677899999999999999999999999999999986    4568889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhhc
Q 026642          218 LHDLGRYVSMTLQIQ  232 (235)
Q Consensus       218 ~~~l~~~~~~~~~~~  232 (235)
                      +...|.++.-.++-+
T Consensus       324 ll~ra~c~l~le~~e  338 (486)
T KOG0550|consen  324 LLRRANCHLALEKWE  338 (486)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999987766543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.47  E-value=6.1e-06  Score=68.96  Aligned_cols=94  Identities=21%  Similarity=0.248  Sum_probs=76.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHc
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPR---NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELM  194 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~---~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~  194 (235)
                      ......+++++|++.|++++...|+   -.+++..+|.++.+.|++++|+..+++.++..|++   +.+++.+|.+++.+
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence            3444567799999999999998776   45789999999999999999999999999999986   46888999987765


Q ss_pred             CC-----------HHHHHHHHHHHHHHCCCC
Q 026642          195 GK-----------LSTAKRLFKDILKERPLL  214 (235)
Q Consensus       195 g~-----------~~~A~~~l~kaL~~~P~~  214 (235)
                      .+           ..+|+..|+.++...|+.
T Consensus        93 ~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S  123 (203)
T PF13525_consen   93 IPGILRSDRDQTSTRKAIEEFEELIKRYPNS  123 (203)
T ss_dssp             HHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred             CccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence            43           358999999999999999

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.47  E-value=2.9e-07  Score=81.95  Aligned_cols=75  Identities=16%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 026642          150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRY  224 (235)
Q Consensus       150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~  224 (235)
                      +...|..|+++|+|+|||+||.+.+..+|.++.++.++|.+|....+|..|...++.++.+|-.++.+|...+..
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A  174 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA  174 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence            677899999999999999999999999999999999999999999999999999999999998887777555443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.46  E-value=5.6e-06  Score=80.93  Aligned_cols=92  Identities=18%  Similarity=0.192  Sum_probs=85.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      +-..+.++.+++...+-.|...+|+|.+.|..++....++|++++|.-||.+||..+|.+.+..+.++.+|..+|++..|
T Consensus       181 ~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~A  260 (895)
T KOG2076|consen  181 EIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRA  260 (895)
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHH
Confidence            33333445899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCC
Q 026642          201 KRLFKDILKERP  212 (235)
Q Consensus       201 ~~~l~kaL~~~P  212 (235)
                      ++.|.+++.+.|
T Consensus       261 m~~f~~l~~~~p  272 (895)
T KOG2076|consen  261 METFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHhhCC
Confidence            999999999999

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.46  E-value=2.1e-07  Score=85.56  Aligned_cols=98  Identities=12%  Similarity=0.115  Sum_probs=93.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      ..++.|+..|.++++++|+++..+...+..+++.+++.+|+....++|+++|....+|+.+|.+....+++.+|...|++
T Consensus        18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~   97 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK   97 (476)
T ss_pred             chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCHHHHHHHHHH
Q 026642          207 ILKERPLLLRALHDLGRY  224 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~  224 (235)
                      ...+.|++..+...+.-+
T Consensus        98 ~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   98 VKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             hhhcCcCcHHHHHHHHHH
Confidence            999999998887766555

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.46  E-value=1.8e-06  Score=85.97  Aligned_cols=111  Identities=17%  Similarity=0.264  Sum_probs=92.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------CCCCHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI--------------------EPNEVE  182 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l--------------------~P~~~~  182 (235)
                      ....+..++|...|+++|+.||+|+.++..+|+.|... +.++|++++.+|++.                    +|++.+
T Consensus       126 Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d  204 (906)
T PRK14720        126 YAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFD  204 (906)
T ss_pred             HHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccch
Confidence            33446789999999999999999999999999999998 999998888777764                    455443


Q ss_pred             HHH--------HHH------------HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhccc
Q 026642          183 WKL--------LQA------------LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSL  234 (235)
Q Consensus       183 a~~--------~lA------------~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~~  234 (235)
                      ...        .++            ..|..+++|++++..++.+|+.+|+|..+.++++.+|.+++.....
T Consensus       205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~  276 (906)
T PRK14720        205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSL  276 (906)
T ss_pred             HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcch
Confidence            311        123            6788889999999999999999999999999999999988876543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.46  E-value=6.5e-07  Score=88.16  Aligned_cols=100  Identities=16%  Similarity=0.087  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      ..+|+..|+.+++.+|+|.+.|..+|.+|...|+|.-|++.++|+..++|.+-...+-.|.+...+|+|.+|.+.+..++
T Consensus       578 ~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  578 LHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             hhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCHHHHHHHHHHHhhc
Q 026642          209 KERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       209 ~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ....+...+..+++.++.+-
T Consensus       658 ~~~s~e~~~q~gLaE~~ir~  677 (1238)
T KOG1127|consen  658 YAFSLERTGQNGLAESVIRD  677 (1238)
T ss_pred             HHHHHHHHhhhhHHHHHHHH
Confidence            98888888888888776653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.45  E-value=5.1e-07  Score=56.92  Aligned_cols=43  Identities=26%  Similarity=0.235  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 026642          181 VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR  223 (235)
Q Consensus       181 ~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~  223 (235)
                      +.++..+|.+|..+|++++|++.|+++++.+|+|..++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4678999999999999999999999999999999999999875

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.43  E-value=1.8e-06  Score=74.61  Aligned_cols=85  Identities=19%  Similarity=0.140  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHH
Q 026642          150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRALHDLGR  223 (235)
Q Consensus       150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~~l~~  223 (235)
                      .+..+.-+++.|+|.+|+..|..-++..|+.   +.+++.||++++.+|+|++|...|..+.+.+|++   +++++.+|+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7889999999999999999999999999986   6899999999999999999999999999999999   799999999


Q ss_pred             HHhhchhhccc
Q 026642          224 YVSMTLQIQSL  234 (235)
Q Consensus       224 ~~~~~~~~~~~  234 (235)
                      ++.+.++.+++
T Consensus       224 ~~~~l~~~d~A  234 (262)
T COG1729         224 SLGRLGNTDEA  234 (262)
T ss_pred             HHHHhcCHHHH
Confidence            99998887654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.42  E-value=1.1e-06  Score=83.20  Aligned_cols=106  Identities=18%  Similarity=0.119  Sum_probs=99.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      +|.+.....+++|+..|+..+.+...|..+.-.|+-++|.++...+++.|+....-|..+|.++....+|++|+++|+.|
T Consensus        22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA  101 (700)
T KOG1156|consen   22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA  101 (700)
T ss_pred             HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            36788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          208 LKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +..+|+|...|+.++++..+-++.+.
T Consensus       102 l~~~~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen  102 LKIEKDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             HhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999877766543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.41  E-value=3.9e-07  Score=81.10  Aligned_cols=89  Identities=21%  Similarity=0.266  Sum_probs=82.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 026642          144 PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR  223 (235)
Q Consensus       144 P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~  223 (235)
                      |.+++-...+|..++..|++.+|+..|..+++.||++..+++.+|.+|..+|+-..|+..+.++|++.|+...+....|.
T Consensus        35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~  114 (504)
T KOG0624|consen   35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence            34566778899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHhhchhhc
Q 026642          224 YVSMTLQIQ  232 (235)
Q Consensus       224 ~~~~~~~~~  232 (235)
                      ++.+.++.+
T Consensus       115 vllK~Gele  123 (504)
T KOG0624|consen  115 VLLKQGELE  123 (504)
T ss_pred             hhhhcccHH
Confidence            888877654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.39  E-value=6.3e-07  Score=85.85  Aligned_cols=102  Identities=16%  Similarity=0.098  Sum_probs=86.9

Q ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 026642          134 EMFEKLLEK-EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP  212 (235)
Q Consensus       134 ~~~e~aL~~-~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P  212 (235)
                      ..|+++++. +-.++.|...+|.....+++|+++.++++..++++|-....|+.+|.+....+++..|.++|.+++.++|
T Consensus       471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P  550 (777)
T KOG1128|consen  471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP  550 (777)
T ss_pred             HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            345555554 2234455566666666689999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhchhhcccC
Q 026642          213 LLLRALHDLGRYVSMTLQIQSLF  235 (235)
Q Consensus       213 ~~~~a~~~l~~~~~~~~~~~~~f  235 (235)
                      ++..+|.++...|.+.++..+.|
T Consensus       551 d~~eaWnNls~ayi~~~~k~ra~  573 (777)
T KOG1128|consen  551 DNAEAWNNLSTAYIRLKKKKRAF  573 (777)
T ss_pred             CchhhhhhhhHHHHHHhhhHHHH
Confidence            99999999999999998877654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.39  E-value=3.4e-07  Score=54.75  Aligned_cols=32  Identities=28%  Similarity=0.242  Sum_probs=22.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          170 VKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       170 l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            56667777777777777777777777776664

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=4.9e-06  Score=75.67  Aligned_cols=96  Identities=17%  Similarity=0.221  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      .++|...+++.|+++|....|-..++.+....|++++++..+++.+...|+ ...+..+|.++...+++.+|+++|.++|
T Consensus       420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL  498 (564)
T KOG1174|consen  420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKAL  498 (564)
T ss_pred             HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            388999999999999999999999999999999999999999999999887 5678899999999999999999999999


Q ss_pred             HHCCCCHHHHHHHHHHH
Q 026642          209 KERPLLLRALHDLGRYV  225 (235)
Q Consensus       209 ~~~P~~~~a~~~l~~~~  225 (235)
                      .+||++..++.|+-.+-
T Consensus       499 r~dP~~~~sl~Gl~~lE  515 (564)
T KOG1174|consen  499 RQDPKSKRTLRGLRLLE  515 (564)
T ss_pred             hcCccchHHHHHHHHHH
Confidence            99999999998887654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.34  E-value=2.7e-06  Score=75.17  Aligned_cols=113  Identities=13%  Similarity=0.074  Sum_probs=90.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG--RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK  196 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g--~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~  196 (235)
                      ..+-....++.+.|.+.++..-+.+.+++-.....+++.+..|  ++.+|...|+++.+..+..+..++.+|.++..+|+
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~  216 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH  216 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence            3344455666899999999988888776666666677777766  59999999999998888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      |++|.+.++++++.+|++..++.+++.+....++.
T Consensus       217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999987766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.34  E-value=6e-06  Score=64.46  Aligned_cols=83  Identities=16%  Similarity=0.063  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHH
Q 026642          150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL----LRALHDLGRYV  225 (235)
Q Consensus       150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~----~~a~~~l~~~~  225 (235)
                      +..-|......|+.++|++.|.+++.+-|..+.+|+++|++|..+|+.++|.+.+++++++.-+.    -.++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            34457788899999999999999999999999999999999999999999999999999988665    56788899999


Q ss_pred             hhchhhc
Q 026642          226 SMTLQIQ  232 (235)
Q Consensus       226 ~~~~~~~  232 (235)
                      ...++..
T Consensus       126 Rl~g~dd  132 (175)
T KOG4555|consen  126 RLLGNDD  132 (175)
T ss_pred             HHhCchH
Confidence            8887654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.34  E-value=4.1e-06  Score=79.79  Aligned_cols=104  Identities=17%  Similarity=0.020  Sum_probs=98.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ..++|++.++++|+..|+....|..+|+++.+.++.+.|-+.|..-++..|+.+..|..++.+-...|..-+|...++++
T Consensus       666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra  745 (913)
T KOG0495|consen  666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA  745 (913)
T ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHhhchhh
Q 026642          208 LKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      ...+|++...|.....+-.+.+..
T Consensus       746 rlkNPk~~~lwle~Ir~ElR~gn~  769 (913)
T KOG0495|consen  746 RLKNPKNALLWLESIRMELRAGNK  769 (913)
T ss_pred             HhcCCCcchhHHHHHHHHHHcCCH
Confidence            999999999999988887776653

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=8.2e-06  Score=74.28  Aligned_cols=109  Identities=21%  Similarity=0.188  Sum_probs=94.8

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------------------------------cCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMR----------------------------------RGRNKEALEF  169 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----------------------------------~g~~~eAi~~  169 (235)
                      ...+++++|+-.|+++.-.||.+.++.-..|.++.+                                  .++++.|+.+
T Consensus       243 ~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~  322 (564)
T KOG1174|consen  243 YYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF  322 (564)
T ss_pred             hhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence            335567899999999999999998887777776655                                  4566778888


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          170 VKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       170 l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      .+|+|+.+|++.++++.+|.++..+|+.++|+-.|+.+..+.|-..+.|.||.-.|...+...
T Consensus       323 ~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  323 VEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             HHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence            999999999999999999999999999999999999999999999999999999987765543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=4e-06  Score=75.90  Aligned_cols=86  Identities=19%  Similarity=0.220  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST-AKRLFK  205 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~-A~~~l~  205 (235)
                      .++.+|++..+++|+.+|+|..|++..|.+++..|+|+.|+..|+++++++|+|-.+...+..+.....++++ ..+.|.
T Consensus       271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~  350 (397)
T KOG0543|consen  271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA  350 (397)
T ss_pred             hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999999999999999999999999998888877765 488888


Q ss_pred             HHHHHCC
Q 026642          206 DILKERP  212 (235)
Q Consensus       206 kaL~~~P  212 (235)
                      +++..-+
T Consensus       351 ~mF~k~~  357 (397)
T KOG0543|consen  351 NMFAKLA  357 (397)
T ss_pred             HHhhccc
Confidence            8887655

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=3.4e-06  Score=71.75  Aligned_cols=84  Identities=8%  Similarity=0.065  Sum_probs=80.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      .++.|+..|.+++..+|..+..|.+.+..|++.++|+.+.+...++++++|+.+.+.+.+|.++.....|++|+..+.++
T Consensus        25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra  104 (284)
T KOG4642|consen   25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA  104 (284)
T ss_pred             hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHC
Q 026642          208 LKER  211 (235)
Q Consensus       208 L~~~  211 (235)
                      +.+.
T Consensus       105 ~sl~  108 (284)
T KOG4642|consen  105 YSLL  108 (284)
T ss_pred             HHHH
Confidence            6543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.26  E-value=9.3e-05  Score=63.67  Aligned_cols=91  Identities=21%  Similarity=0.226  Sum_probs=73.0

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC-
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNV---EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV---EWKLLQALCYELMGK-  196 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~---~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~---~a~~~lA~~~~~~g~-  196 (235)
                      .+.+++++|++.|+.+....|.++   .+...++..+.+.+++++|+...++-+++.|.++   .+++.+|.++...=+ 
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~  124 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD  124 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence            345689999999999999987655   6888899999999999999999999999998753   456667777654432 


Q ss_pred             -------HHHHHHHHHHHHHHCCCC
Q 026642          197 -------LSTAKRLFKDILKERPLL  214 (235)
Q Consensus       197 -------~~~A~~~l~kaL~~~P~~  214 (235)
                             -.+|...|+.+++..|+.
T Consensus       125 ~~rDq~~~~~A~~~f~~~i~ryPnS  149 (254)
T COG4105         125 VTRDQSAARAAFAAFKELVQRYPNS  149 (254)
T ss_pred             cccCHHHHHHHHHHHHHHHHHCCCC
Confidence                   246777888888888876

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.22  E-value=3e-05  Score=64.09  Aligned_cols=106  Identities=16%  Similarity=0.058  Sum_probs=90.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHH
Q 026642          122 KRDALMGKSEVEEMFEKLLE-KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE--VEWKLLQALCYELMGKLS  198 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~-~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~--~~a~~~lA~~~~~~g~~~  198 (235)
                      ..-+.+++.||+..|++++. ..-+|+..+..+++..+..+++.+|...++++.+.+|..  ++....+|++|...|+++
T Consensus        98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a  177 (251)
T COG4700          98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA  177 (251)
T ss_pred             HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence            44445567889999999887 577899999999999999999999999999999999874  788999999999999999


Q ss_pred             HHHHHHHHHHHHCCCC-HHHHHHHHHHHhh
Q 026642          199 TAKRLFKDILKERPLL-LRALHDLGRYVSM  227 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~-~~a~~~l~~~~~~  227 (235)
                      +|...|+.++...|+. ...+++.-+.-+.
T Consensus       178 ~Aesafe~a~~~ypg~~ar~~Y~e~La~qg  207 (251)
T COG4700         178 DAESAFEVAISYYPGPQARIYYAEMLAKQG  207 (251)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            9999999999999998 5566555444443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.20  E-value=2e-06  Score=51.31  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=31.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642          135 MFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALE  168 (235)
Q Consensus       135 ~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~  168 (235)
                      .|+++++.+|+|+++|..+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999973

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.17  E-value=1.5e-05  Score=73.69  Aligned_cols=59  Identities=19%  Similarity=0.061  Sum_probs=52.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEA---LKVVMQGNMRRGRNKEALEFVKRLIDIE  177 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a---~~~la~~~~~~g~~~eAi~~l~kai~l~  177 (235)
                      +.......+++++|+..|+++|+.+|++.++   |+++|.+|..+|++++|++++++++++.
T Consensus        81 LG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         81 LGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            3344455667999999999999999999976   9999999999999999999999999983

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.17  E-value=1.3e-05  Score=70.85  Aligned_cols=91  Identities=19%  Similarity=0.242  Sum_probs=78.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL-STAKRLFK  205 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~-~~A~~~l~  205 (235)
                      +.+.+|.-.|++..+..+.++..+..++.+++.+|+|++|.+.++++++.+|++++...+++.+...+|+. +.+.+++.
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            34678899999988888899999999999999999999999999999999999999999999999999999 67778889


Q ss_pred             HHHHHCCCCHHH
Q 026642          206 DILKERPLLLRA  217 (235)
Q Consensus       206 kaL~~~P~~~~a  217 (235)
                      ++-..+|+++..
T Consensus       261 qL~~~~p~h~~~  272 (290)
T PF04733_consen  261 QLKQSNPNHPLV  272 (290)
T ss_dssp             HCHHHTTTSHHH
T ss_pred             HHHHhCCCChHH
Confidence            999999998543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.15  E-value=6.5e-06  Score=48.23  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          182 EWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      ++++.+|.++..+|++++|++.|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            445555555555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.14  E-value=5.1e-06  Score=48.96  Aligned_cols=32  Identities=19%  Similarity=0.163  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642          182 EWKLLQALCYELMGKLSTAKRLFKDILKERPL  213 (235)
Q Consensus       182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~  213 (235)
                      ++|+.+|.+|..+|++++|++.|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.14  E-value=2.7e-05  Score=77.16  Aligned_cols=92  Identities=16%  Similarity=0.048  Sum_probs=83.1

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR-NKEALEFVKRLIDIEPNEVEWKLLQALCYELM---GKLST  199 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~-~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~---g~~~~  199 (235)
                      ..+.+|++|++..+++|+.||+|-.++..+|..+...|. .++|-+.|..+.+++|++.-+|-.++.+|...   -++++
T Consensus        13 l~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~   92 (1238)
T KOG1127|consen   13 LRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDR   92 (1238)
T ss_pred             HhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhH
Confidence            345679999999999999999999999999999999998 99999999999999999999999999999874   45789


Q ss_pred             HHHHHHHHHHHCCCCH
Q 026642          200 AKRLFKDILKERPLLL  215 (235)
Q Consensus       200 A~~~l~kaL~~~P~~~  215 (235)
                      +...|++++...++..
T Consensus        93 ~~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   93 AAKCYQRAVLILENQS  108 (1238)
T ss_pred             hHHHHHHHHHhhhhhh
Confidence            9999999887777653

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.13  E-value=7.1e-06  Score=48.07  Aligned_cols=34  Identities=26%  Similarity=0.508  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE  180 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~  180 (235)
                      +++|..+|.++...|++++|+++++++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            5789999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.13  E-value=5e-06  Score=49.00  Aligned_cols=34  Identities=26%  Similarity=0.503  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE  180 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~  180 (235)
                      +++|..+|.+|..+|++++|+++|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4789999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.10  E-value=2.2e-05  Score=74.11  Aligned_cols=113  Identities=16%  Similarity=0.127  Sum_probs=88.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEK--------EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE--------PNEVE  182 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~--------~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~--------P~~~~  182 (235)
                      +.......+++++|+..++++++.        .|.=......+|.+|..++++++|+..|++++.+-        |.-+.
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~  284 (508)
T KOG1840|consen  205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA  284 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            334444566789999999999998        55555566679999999999999999999999752        33456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHhhchhh
Q 026642          183 WKLLQALCYELMGKLSTAKRLFKDILKERPL--------LLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~--------~~~a~~~l~~~~~~~~~~  231 (235)
                      .+.++|.+|...|++++|..++++++++.-.        -...+.+++.++.-.++.
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~  341 (508)
T KOG1840|consen  285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY  341 (508)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch
Confidence            7889999999999999999999999875432        256667777777665553

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.10  E-value=0.00027  Score=67.16  Aligned_cols=112  Identities=16%  Similarity=0.061  Sum_probs=92.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      .+-.+..+++++|.+.++++++.+|..++.+...|+++-..|++++|.++++.+-.+|..|-.....-+..+...|+.++
T Consensus       201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~  280 (517)
T PF12569_consen  201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEE  280 (517)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHH
Confidence            34445567899999999999999999999999999999999999999999999999999988887788889999999999


Q ss_pred             HHHHHHHHHHHCC--CC-------HHHHHHHHHHHhhchhh
Q 026642          200 AKRLFKDILKERP--LL-------LRALHDLGRYVSMTLQI  231 (235)
Q Consensus       200 A~~~l~kaL~~~P--~~-------~~a~~~l~~~~~~~~~~  231 (235)
                      |.+.+......+-  ..       .....+.|..|.+.++.
T Consensus       281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~  321 (517)
T PF12569_consen  281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY  321 (517)
T ss_pred             HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence            9999988766552  11       22335667777776654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.05  E-value=5.1e-05  Score=74.39  Aligned_cols=103  Identities=20%  Similarity=0.181  Sum_probs=95.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      ++..+|.....+.++..|+..-+...-|..++++|++++|..+++..-...+++....-.+-.||..+|++++|...|++
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~  102 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER  102 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHhhchh
Q 026642          207 ILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +++.+|. ...+.++-+.|.+-++
T Consensus       103 ~~~~~P~-eell~~lFmayvR~~~  125 (932)
T KOG2053|consen  103 ANQKYPS-EELLYHLFMAYVREKS  125 (932)
T ss_pred             HHhhCCc-HHHHHHHHHHHHHHHH
Confidence            9999999 8888888888877654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=8.9e-05  Score=63.60  Aligned_cols=104  Identities=17%  Similarity=0.185  Sum_probs=84.2

Q ss_pred             chHHHHHHHHh---cCCHHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          115 ASENLKEKRDA---LMGKSEVEEMFEKLLE--------KEPRNV----------EALKVVMQGNMRRGRNKEALEFVKRL  173 (235)
Q Consensus       115 ~~~~~~e~~~~---~~~~~eA~~~~e~aL~--------~~P~~~----------~a~~~la~~~~~~g~~~eAi~~l~ka  173 (235)
                      ++..+.++++.   .+.+.+|+..|..++.        ..|.++          ..+.+++++++..|+|-++++....+
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            33444444443   4567888887777663        356554          45677888999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642          174 IDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       174 i~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~  218 (235)
                      +..+|+++.+++.+|.++...=+.++|...|.++|+++|--..+.
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            999999999999999999999999999999999999999885444

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.00  E-value=0.00017  Score=56.47  Aligned_cols=62  Identities=21%  Similarity=0.355  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK  209 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~  209 (235)
                      .++..++..+...|++++|+..+++++..+|.+-.++..+..+|...|+..+|++.|+++..
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            56777888889999999999999999999999999999999999999999999999988743

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=1.2e-05  Score=68.52  Aligned_cols=78  Identities=19%  Similarity=0.217  Sum_probs=70.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          152 VVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       152 ~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      .-|.-++..++|+.|+.+|-++|.++|..+.+|.++|.||..+.+++.+....+++++++|+.+.+++.+|.......
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            345567778899999999999999999999999999999999999999999999999999999999999988765543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.00  E-value=0.00014  Score=69.68  Aligned_cols=103  Identities=14%  Similarity=0.135  Sum_probs=57.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .++...|...+.++.+.+|++.+.|.....+.+...++++|-..+.++-...|. .+.|..-+.+...+|+.++|++.++
T Consensus       597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllE  675 (913)
T KOG0495|consen  597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLE  675 (913)
T ss_pred             cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHH
Confidence            344566667777777777777777766666665555555555555555443332 3444444455555555555555555


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhch
Q 026642          206 DILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      ++|+..|+....|..+|.++.+.+
T Consensus       676 e~lk~fp~f~Kl~lmlGQi~e~~~  699 (913)
T KOG0495|consen  676 EALKSFPDFHKLWLMLGQIEEQME  699 (913)
T ss_pred             HHHHhCCchHHHHHHHhHHHHHHH
Confidence            555555555555555555554443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.99  E-value=5e-05  Score=71.73  Aligned_cols=114  Identities=18%  Similarity=0.145  Sum_probs=90.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEK--------EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP--------NEVE  182 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~--------~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P--------~~~~  182 (235)
                      +..-......+++|+..|+++|..        +|.-+.++..|+.+|...|++++|..++++|+++--        +-..
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            444445556689999999999974        455667899999999999999999999999998632        2234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CC---HHHHHHHHHHHhhchhhc
Q 026642          183 WKLLQALCYELMGKLSTAKRLFKDILKERP-----LL---LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P-----~~---~~a~~~l~~~~~~~~~~~  232 (235)
                      .+..++.++..++++++|+.++++++++.-     ++   ...+-++|.+|.+.+...
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~  384 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK  384 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence            567789999999999999999999887543     33   567788888888776644

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.99  E-value=5.4e-05  Score=63.92  Aligned_cols=79  Identities=16%  Similarity=0.052  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRY  224 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~  224 (235)
                      -+..+...|.+|--.|=++-|.-.+.+++.+.|+.+++.+.+|.-+...|+|+.|.+.|+.++++||.+--++.+.|+.
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            3456778888999999999999999999999999999999999999999999999999999999999998888777765

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.96  E-value=5.9e-05  Score=71.62  Aligned_cols=81  Identities=19%  Similarity=0.165  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      .+++.+++.|-..|++++|+++++++|+..|..++.+..+|.+|...|++++|.+.++.+-++|..|--.--..+..+.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            35588899999999999999999999999999999999999999999999999999999999999884443333433333


Q ss_pred             c
Q 026642          228 T  228 (235)
Q Consensus       228 ~  228 (235)
                      .
T Consensus       275 a  275 (517)
T PF12569_consen  275 A  275 (517)
T ss_pred             C
Confidence            3

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.00015  Score=67.00  Aligned_cols=109  Identities=24%  Similarity=0.324  Sum_probs=81.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      +.+-.+.+++..+|-+++-.--+.-|-|.+....||..|+...-++.||.+++++--+.|+...|....|.|+...|+|.
T Consensus       598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq  677 (840)
T KOG2003|consen  598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ  677 (840)
T ss_pred             HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence            33333344445555555544445556666666666666666777788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      +|.+.|+.+-...|.+...+.-|+.+...
T Consensus       678 ka~d~yk~~hrkfpedldclkflvri~~d  706 (840)
T KOG2003|consen  678 KAFDLYKDIHRKFPEDLDCLKFLVRIAGD  706 (840)
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence            99999999999999997777666655443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.87  E-value=9.4e-05  Score=61.77  Aligned_cols=83  Identities=14%  Similarity=0.057  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-----EWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL  221 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-----~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l  221 (235)
                      ++-+..-|.-++..|+|++|..-|..|++..|...     -.+.++|.+++.+++++.|++.+.++++++|.+..++...
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            45566778889999999999999999999999754     3466789999999999999999999999999999999999


Q ss_pred             HHHHhhch
Q 026642          222 GRYVSMTL  229 (235)
Q Consensus       222 ~~~~~~~~  229 (235)
                      +.+|.+..
T Consensus       175 Aeayek~e  182 (271)
T KOG4234|consen  175 AEAYEKME  182 (271)
T ss_pred             HHHHHhhh
Confidence            99988764

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.87  E-value=0.00021  Score=52.25  Aligned_cols=77  Identities=17%  Similarity=0.187  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          132 VEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE--VEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       132 A~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~--~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      .+..+++.++.+|+|.++.+.++..++..|++++|++.+-.+++.++++  ..++-.+-.++...|.-+.....|++-|
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL   85 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL   85 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            4677888999999999999999999999999999999999999999876  5677777777777777666666665543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.84  E-value=0.00025  Score=66.08  Aligned_cols=112  Identities=21%  Similarity=0.243  Sum_probs=80.2

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------
Q 026642          115 ASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN---------------  179 (235)
Q Consensus       115 ~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~---------------  179 (235)
                      ++....++-=++.+.++-++...+||+.+|++++||..|+.-.  ..-..||+++|+++++....               
T Consensus       170 ~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~  247 (539)
T PF04184_consen  170 PAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW  247 (539)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence            3344455555566778889999999999999999999888742  22344555555555543211               


Q ss_pred             ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHhhc
Q 026642          180 ----------EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL--LRALHDLGRYVSMT  228 (235)
Q Consensus       180 ----------~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~--~~a~~~l~~~~~~~  228 (235)
                                ...+...+|+|...+|+.++|++.++.+++..|..  ..++.+|...+...
T Consensus       248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLel  308 (539)
T PF04184_consen  248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLEL  308 (539)
T ss_pred             hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhc
Confidence                      14556678999999999999999999999988863  66777777665443

The molecular function of this protein is uncertain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.84  E-value=0.00018  Score=65.11  Aligned_cols=76  Identities=16%  Similarity=0.173  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          132 VEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       132 A~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      -++..++.++..|+++..+..||+++++.+.|.+|-++++.+++..|+ ...+..+|.++...|+.++|.+.+++++
T Consensus       313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555555555443 3444455555555555555555555554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=7.4e-05  Score=65.82  Aligned_cols=104  Identities=16%  Similarity=0.114  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------------------------
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN-----------------------------  179 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~-----------------------------  179 (235)
                      +..|++++.--.+.+|.+..++..||.+|....+|.+|.+||+++-.+.|.                             
T Consensus        26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~  105 (459)
T KOG4340|consen   26 YADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLL  105 (459)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence            556666666666666666666666666666666666666666555554443                             


Q ss_pred             -------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 026642          180 -------------------------------------EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLG  222 (235)
Q Consensus       180 -------------------------------------~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~  222 (235)
                                                           +++..++.|.+.+..|+|++|++-|+.+++..-.++..-++++
T Consensus       106 D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA  185 (459)
T KOG4340|consen  106 DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA  185 (459)
T ss_pred             CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH
Confidence                                                 4556666777777888888888888888888777777778888


Q ss_pred             HHHhhchhhc
Q 026642          223 RYVSMTLQIQ  232 (235)
Q Consensus       223 ~~~~~~~~~~  232 (235)
                      ++..++++..
T Consensus       186 LaHy~~~qya  195 (459)
T KOG4340|consen  186 LAHYSSRQYA  195 (459)
T ss_pred             HHHHhhhhHH
Confidence            8877776643

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.81  E-value=7.7e-06  Score=72.72  Aligned_cols=89  Identities=13%  Similarity=0.036  Sum_probs=83.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .+..++|++.|..+++++|..+..+...+.++++.+++..||..++.+++++|+...-|-.++.+...+|+|++|..+++
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~  206 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA  206 (377)
T ss_pred             CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCC
Q 026642          206 DILKERPLL  214 (235)
Q Consensus       206 kaL~~~P~~  214 (235)
                      .+.+++=+-
T Consensus       207 ~a~kld~dE  215 (377)
T KOG1308|consen  207 LACKLDYDE  215 (377)
T ss_pred             HHHhccccH
Confidence            999988654

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.81  E-value=8.4e-06  Score=75.23  Aligned_cols=85  Identities=15%  Similarity=0.135  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      -+..-+...+..++|+.|+..|.++|+++|+++.++-+++.++...++|..|+..+.++++++|....+|+..|..+.+.
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l   85 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL   85 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence            34455677788999999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             hhhcc
Q 026642          229 LQIQS  233 (235)
Q Consensus       229 ~~~~~  233 (235)
                      ....+
T Consensus        86 ~~~~~   90 (476)
T KOG0376|consen   86 GEFKK   90 (476)
T ss_pred             HHHHH
Confidence            66543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00079  Score=59.08  Aligned_cols=89  Identities=20%  Similarity=0.265  Sum_probs=76.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH----------------------------------HH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEF----------------------------------VK  171 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~----------------------------------l~  171 (235)
                      .+++.+|...|..++..+|++.++...++.+|+..|+.++|...                                  ++
T Consensus       147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~  226 (304)
T COG3118         147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ  226 (304)
T ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            45678889999999999999999999999999999999877544                                  34


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          172 RLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       172 kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      +.+..||++.++.+.+|..|...|++++|.+.+-.+++.+-+.
T Consensus       227 ~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~  269 (304)
T COG3118         227 RRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF  269 (304)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            4555689999999999999999999999999999998886544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.75  E-value=0.0011  Score=51.53  Aligned_cols=99  Identities=30%  Similarity=0.365  Sum_probs=49.9

Q ss_pred             cCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEP---RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN-EVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P---~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~-~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      .+++++|...+++++..+|   .....+..++..+...+++++|+..++++++..+. ....+..++.++...|++++|.
T Consensus       143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  222 (291)
T COG0457         143 LGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEAL  222 (291)
T ss_pred             cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHH
Confidence            3344555555555554444   23344444444445555555555555555555555 3555555555555555555555


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHH
Q 026642          202 RLFKDILKERPLLLRALHDLGRY  224 (235)
Q Consensus       202 ~~l~kaL~~~P~~~~a~~~l~~~  224 (235)
                      ..+.+++...|.....+..++..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~  245 (291)
T COG0457         223 EYYEKALELDPDNAEALYNLALL  245 (291)
T ss_pred             HHHHHHHhhCcccHHHHhhHHHH
Confidence            55555555555543333333333

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.75  E-value=0.00046  Score=59.44  Aligned_cols=82  Identities=17%  Similarity=0.113  Sum_probs=70.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRALH  219 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~  219 (235)
                      -++.|+.-|...++.|+|++|++.|+++....|..   ..+.+.++.+++..|+|++|+...++.+.++|++   .-+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            46777788888899999999999999999999876   4788899999999999999999999999999999   45556


Q ss_pred             HHHHHHhh
Q 026642          220 DLGRYVSM  227 (235)
Q Consensus       220 ~l~~~~~~  227 (235)
                      -.|+.+..
T Consensus       113 lkgLs~~~  120 (254)
T COG4105         113 LKGLSYFF  120 (254)
T ss_pred             HHHHHHhc
Confidence            66665443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.75  E-value=0.00027  Score=61.98  Aligned_cols=87  Identities=11%  Similarity=0.109  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMR-RGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~-~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      .++|..+|+++++..+-..+.|...|.+... .++.+.|.+.|+++++..|.+...|......+...|+.+.|...|+++
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~   96 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERA   96 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            6788899999987666678889988998777 456666999999999999999999998888888999999999999999


Q ss_pred             HHHCCCCH
Q 026642          208 LKERPLLL  215 (235)
Q Consensus       208 L~~~P~~~  215 (235)
                      +..-|...
T Consensus        97 i~~l~~~~  104 (280)
T PF05843_consen   97 ISSLPKEK  104 (280)
T ss_dssp             CCTSSCHH
T ss_pred             HHhcCchh
Confidence            88766654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.00012  Score=65.87  Aligned_cols=102  Identities=19%  Similarity=0.176  Sum_probs=80.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNV-EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~-~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      .+.....+++..|+..++-.+..+.... .....+|.+++..|+|++|+..|+-+.+.+-.+.+.+.++|.|+..+|.|.
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~  108 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI  108 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence            4455566779999999998887654433 456668999999999999999999999987778899999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHH
Q 026642          199 TAKRLFKDILKERPLLLRALHDLG  222 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~  222 (235)
                      +|....+++- ..|-..+.++.++
T Consensus       109 eA~~~~~ka~-k~pL~~RLlfhla  131 (557)
T KOG3785|consen  109 EAKSIAEKAP-KTPLCIRLLFHLA  131 (557)
T ss_pred             HHHHHHhhCC-CChHHHHHHHHHH
Confidence            9998887652 2333345555444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.73  E-value=0.00014  Score=59.53  Aligned_cols=62  Identities=18%  Similarity=0.261  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR-----------NKEALEFVKRLIDIEPNEVEWKLLQALC  190 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~-----------~~eAi~~l~kai~l~P~~~~a~~~lA~~  190 (235)
                      +++|+.-|+++|.++|+..+++..+|.+|...+.           |++|.++|+++++.+|++..++..|-.+
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            6899999999999999999999999999977543           7889999999999999998887776554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.72  E-value=0.0011  Score=51.56  Aligned_cols=101  Identities=26%  Similarity=0.272  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQ-GNMRRGRNKEALEFVKRLIDIEP---NEVEWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~-~~~~~g~~~eAi~~l~kai~l~P---~~~~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      +.++++.+++++..++.+.......+. ++...|++++|+..+++++..+|   ........++..+...+++++|...+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  190 (291)
T COG0457         111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL  190 (291)
T ss_pred             HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence            556667777777666665555555555 67777777777777777766665   34555555666666777777777777


Q ss_pred             HHHHHHCCC-CHHHHHHHHHHHhhch
Q 026642          205 KDILKERPL-LLRALHDLGRYVSMTL  229 (235)
Q Consensus       205 ~kaL~~~P~-~~~a~~~l~~~~~~~~  229 (235)
                      .+++...+. ....+..++..+...+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         191 EKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHhhCcccchHHHHHhhHHHHHcc
Confidence            777777777 4666666666665543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.72  E-value=7.3e-05  Score=43.78  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642          182 EWKLLQALCYELMGKLSTAKRLFKDILKERPL  213 (235)
Q Consensus       182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~  213 (235)
                      ++|+.+|.+|..+|++++|++.|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            34555555555555555555555555555553

...

>PRK10941 hypothetical protein; Provisional

Probab=97.71  E-value=0.00056  Score=59.83  Aligned_cols=70  Identities=14%  Similarity=0.068  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642          149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~  218 (235)
                      .+.++-.+|.+.++++.|+.+.++++.++|+++.-+..+|.+|..+|.+..|...++..++..|+++.+-
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            4556677889999999999999999999999999999999999999999999999999999999995544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.68  E-value=0.0011  Score=55.05  Aligned_cols=102  Identities=13%  Similarity=0.112  Sum_probs=79.7

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID-IEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~-l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      +..+.+...+...+.++.-|.. .-.+.||....+.|++.||...|++++. +.-+++.....+|++....|++..|...
T Consensus        68 q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t  146 (251)
T COG4700          68 QKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT  146 (251)
T ss_pred             HhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence            3334555666666666666653 4567799999999999999999999986 6778899999999999999999999999


Q ss_pred             HHHHHHHCCCC--HHHHHHHHHHHhh
Q 026642          204 FKDILKERPLL--LRALHDLGRYVSM  227 (235)
Q Consensus       204 l~kaL~~~P~~--~~a~~~l~~~~~~  227 (235)
                      ++++.+.+|..  +..+.-++..+..
T Consensus       147 Le~l~e~~pa~r~pd~~Ll~aR~laa  172 (251)
T COG4700         147 LEDLMEYNPAFRSPDGHLLFARTLAA  172 (251)
T ss_pred             HHHHhhcCCccCCCCchHHHHHHHHh
Confidence            99999999876  4444444444443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.68  E-value=0.0019  Score=58.54  Aligned_cols=109  Identities=14%  Similarity=0.093  Sum_probs=96.5

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      .++++.+|++...+.-+..+.-.-++..-+....+.|+++.|-.++.++-++.+++ .-....+++++...||++.|..-
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            36789999999999888888878888888999999999999999999999996655 55677899999999999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          204 FKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ..++++..|.+..++.-...+|.+.++..+
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence            999999999999999988888888877543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=0.00043  Score=60.10  Aligned_cols=102  Identities=17%  Similarity=0.238  Sum_probs=81.3

Q ss_pred             HhcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642          124 DALMGKSEVEEMFEKLLE------KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL  197 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~------~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~  197 (235)
                      -+.++.+.|...|+.+-+      .--++..+..+.+.+|.-++++.+|...+++.++.||.++.+.+++|.|+.+.|+.
T Consensus       223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l  302 (366)
T KOG2796|consen  223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL  302 (366)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence            334455666666663322      22345677888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCC---HHHHHHHHHHH
Q 026642          198 STAKRLFKDILKERPLL---LRALHDLGRYV  225 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~---~~a~~~l~~~~  225 (235)
                      .+|++.++.+++.+|..   ....+++-.+|
T Consensus       303 ~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  303 KDALKQLEAMVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             HHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence            99999999999999987   34445554443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.66  E-value=9.2e-05  Score=43.34  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE  180 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~  180 (235)
                      .++|..+|.+|...|++++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3689999999999999999999999999999853

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.64  E-value=0.00018  Score=62.96  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=76.1

Q ss_pred             CHHHHHHHHHHHHHh--CCC----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHc
Q 026642          128 GKSEVEEMFEKLLEK--EPR----NVEALKVVMQGNMRR-GRNKEALEFVKRLIDIEP--NE----VEWKLLQALCYELM  194 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~--~P~----~~~a~~~la~~~~~~-g~~~eAi~~l~kai~l~P--~~----~~a~~~lA~~~~~~  194 (235)
                      +.++|++.|+++++.  .-+    -+..+..+|.+|... |++++|+++|++++++..  +.    ...+...|.++...
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l  168 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL  168 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence            678999999999885  222    246788999999999 999999999999998642  22    34566789999999


Q ss_pred             CCHHHHHHHHHHHHHHCCCC------H-HHHHHHHHHHhhchh
Q 026642          195 GKLSTAKRLFKDILKERPLL------L-RALHDLGRYVSMTLQ  230 (235)
Q Consensus       195 g~~~~A~~~l~kaL~~~P~~------~-~a~~~l~~~~~~~~~  230 (235)
                      |+|++|++.|+++....-++      + ..++..++++...+|
T Consensus       169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D  211 (282)
T PF14938_consen  169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD  211 (282)
T ss_dssp             T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-
T ss_pred             CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC
Confidence            99999999999998754332      2 345666777666655

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.62  E-value=0.0018  Score=66.57  Aligned_cols=91  Identities=12%  Similarity=0.153  Sum_probs=47.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEK----EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE-PNEVEWKLLQALCYEL  193 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~----~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~-P~~~~a~~~lA~~~~~  193 (235)
                      +.......++.++|.+.|++..+.    .| |...|..+...|.+.|++++|++.|+++.+.+ +.+...|..+...|..
T Consensus       548 LI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k  626 (1060)
T PLN03218        548 LISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ  626 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence            344444445555666666555442    22 24455555555555555555555555555544 2334455555555555


Q ss_pred             cCCHHHHHHHHHHHHHH
Q 026642          194 MGKLSTAKRLFKDILKE  210 (235)
Q Consensus       194 ~g~~~~A~~~l~kaL~~  210 (235)
                      .|++++|.+.|+++.+.
T Consensus       627 ~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        627 KGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             cCCHHHHHHHHHHHHHc
Confidence            55555555555555443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.59  E-value=0.00014  Score=41.97  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          182 EWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      ++++.+|.++...|++++|++.|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            356666777777777777777777777776653

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00044  Score=59.42  Aligned_cols=82  Identities=22%  Similarity=0.221  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLID--------IEPNEVEW----------KLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~--------l~P~~~~a----------~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ...++..-|.-++++|+|+||...|..||.        ..|.+++|          +.++++|+...|+|-++++....+
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            456788889999999999999999988874        35766655          567899999999999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHhh
Q 026642          208 LKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~  227 (235)
                      |..+|+|+.+|+..|.....
T Consensus       257 L~~~~~nvKA~frRakAhaa  276 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAA  276 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHh
Confidence            99999999999999887654

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.55  E-value=0.0023  Score=65.77  Aligned_cols=115  Identities=9%  Similarity=-0.003  Sum_probs=88.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHH
Q 026642          117 ENLKEKRDALMGKSEVEEMFEKLLEKE-PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI----EPNEVEWKLLQALCY  191 (235)
Q Consensus       117 ~~~~e~~~~~~~~~eA~~~~e~aL~~~-P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l----~P~~~~a~~~lA~~~  191 (235)
                      ..+.......+++++|++.|++..+.. .-|...|..+...|.+.|++++|.+.+++..+.    .|+ ...|..+..+|
T Consensus       511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay  589 (1060)
T PLN03218        511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKAC  589 (1060)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHH
Confidence            445666666777899999998887653 224788999999999999999999999998763    444 56777788889


Q ss_pred             HHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhchhhc
Q 026642          192 ELMGKLSTAKRLFKDILKER-PLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       192 ~~~g~~~~A~~~l~kaL~~~-P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ...|++++|.+.|+++.+.+ +.+...|..+...|.+.++.+
T Consensus       590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d  631 (1060)
T PLN03218        590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD  631 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Confidence            99999999999999998876 344677777777777766543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.51  E-value=0.00074  Score=66.26  Aligned_cols=105  Identities=13%  Similarity=0.067  Sum_probs=76.0

Q ss_pred             cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEP--RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P--~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      .+..++|.+.|+...+...  -+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++.|...
T Consensus       439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~  516 (697)
T PLN03081        439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLA  516 (697)
T ss_pred             CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHH
Confidence            3445666666666655322  23456777788888888888888877664 2333 356677788888889999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          204 FKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++++++.+|++...|..++.+|.+.++-+
T Consensus       517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~  545 (697)
T PLN03081        517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQA  545 (697)
T ss_pred             HHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence            99999999998888888888888776643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.00052  Score=65.00  Aligned_cols=93  Identities=15%  Similarity=0.124  Sum_probs=60.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHH---------------------------------HHHHHHHcCCHHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKV---------------------------------VMQGNMRRGRNKEALEFVKR  172 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~---------------------------------la~~~~~~g~~~eAi~~l~k  172 (235)
                      ++++++|++...+++...|++.++...                                 .+++.++.++.|+|+++++ 
T Consensus        25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-  103 (652)
T KOG2376|consen   25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK-  103 (652)
T ss_pred             chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-
Confidence            344666666666666666666655544                                 4455555555555555555 


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 026642          173 LIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL  221 (235)
Q Consensus       173 ai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l  221 (235)
                        -+++.+.......|+++|.+|+|++|.+.|+.+++.+-++.+.....
T Consensus       104 --~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~  150 (652)
T KOG2376|consen  104 --GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRA  150 (652)
T ss_pred             --cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence              34555666777778888888888888888888877777665444433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.49  E-value=0.0014  Score=61.65  Aligned_cols=105  Identities=20%  Similarity=0.133  Sum_probs=84.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV----EWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~----~a~~~lA~~~~~~g~~~~A~  201 (235)
                      ....+.|++.++...+..|+..-.+...|+++...|+.++|++.|++++.......    -.++.+|.++..+++|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            33468899999999999999999999999999999999999999999996554433    34667999999999999999


Q ss_pred             HHHHHHHHHCCCC-HHHHHHHHHHHhhchh
Q 026642          202 RLFKDILKERPLL-LRALHDLGRYVSMTLQ  230 (235)
Q Consensus       202 ~~l~kaL~~~P~~-~~a~~~l~~~~~~~~~  230 (235)
                      +.+.++++.+.-. .-..|..|.++...++
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~  355 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGR  355 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence            9999999866543 3333555555555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.48  E-value=0.0031  Score=56.42  Aligned_cols=95  Identities=12%  Similarity=0.111  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          133 EEMFEKLLEKEPRNVEALKVVMQGNMRRGR------------NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       133 ~~~~e~aL~~~P~~~~a~~~la~~~~~~g~------------~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ...|++.++.+|+|+++|..++...-..-.            .+.-+..|++|++.+|++...+..+-.+.....+-++.
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l   84 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL   84 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            456888999999999999999887655422            45678899999999999999999998899999999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          201 KRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      .+.+++++..+|++...|.++....+.
T Consensus        85 ~~~we~~l~~~~~~~~LW~~yL~~~q~  111 (321)
T PF08424_consen   85 AKKWEELLFKNPGSPELWREYLDFRQS  111 (321)
T ss_pred             HHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            999999999999999999887776554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.46  E-value=0.002  Score=63.25  Aligned_cols=107  Identities=15%  Similarity=0.107  Sum_probs=77.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP-NEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P-~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      ......+..++|.+.|++.   .+.|...|..+...|.+.|++++|++.|++..+..- -+...+..+..++...|++++
T Consensus       267 ~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~  343 (697)
T PLN03081        267 DMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH  343 (697)
T ss_pred             HHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence            3334455678888888765   345788899999999999999999999988876431 235567777777888888888


Q ss_pred             HHHHHHHHHHHC-CCCHHHHHHHHHHHhhchh
Q 026642          200 AKRLFKDILKER-PLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       200 A~~~l~kaL~~~-P~~~~a~~~l~~~~~~~~~  230 (235)
                      |.+.++.+++.. +.+..++..++..|.+.++
T Consensus       344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~  375 (697)
T PLN03081        344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGR  375 (697)
T ss_pred             HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC
Confidence            888888777765 4446666666777766555

>PLN03077 Protein ECB2; Provisional

Probab=97.43  E-value=0.002  Score=64.74  Aligned_cols=111  Identities=15%  Similarity=0.061  Sum_probs=86.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEP--RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK  196 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P--~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~  196 (235)
                      +...-...+..++|.+.|++..+..+  -+.+.|..++.++.+.|++++|++.+++. ...|+ +..|..+-.++...|+
T Consensus       595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~  672 (857)
T PLN03077        595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRH  672 (857)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC
Confidence            33344445567889999998875432  24678999999999999999999999885 45666 4555555557788899


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      .+.|....+++++++|++...|.-++.+|.+.++-
T Consensus       673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~  707 (857)
T PLN03077        673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKW  707 (857)
T ss_pred             hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCCh
Confidence            99999999999999999999998888888776653

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.41  E-value=0.00037  Score=48.55  Aligned_cols=54  Identities=28%  Similarity=0.377  Sum_probs=44.1

Q ss_pred             HHhcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026642          123 RDALMGKSEVEEMFEKLLEK---E----PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI  176 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~---~----P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l  176 (235)
                      ....+++++|++.|+++++.   .    |.-+.++..+|.++...|++++|++++++++++
T Consensus        15 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   15 YRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34455689999999999865   1    223678999999999999999999999999986

...

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.0034  Score=54.50  Aligned_cols=100  Identities=16%  Similarity=0.151  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMR----RGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      .+-|++.+++..+.+  +-..+..||..+.+    .+++.+|.-+|++.-+..+-.+......|.|...+|+|++|...+
T Consensus       153 ~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL  230 (299)
T KOG3081|consen  153 FDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL  230 (299)
T ss_pred             HHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence            355666666666654  33455557666655    346889999999999877777888889999999999999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          205 KDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +.+|..+++++.++.|+..+-...+.
T Consensus       231 ~eaL~kd~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  231 EEALDKDAKDPETLANLIVLALHLGK  256 (299)
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999887655443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.37  E-value=0.0017  Score=56.85  Aligned_cols=100  Identities=22%  Similarity=0.241  Sum_probs=73.8

Q ss_pred             CCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CH-HHHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKE--PRN----VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN------EV-EWKLLQALCYEL  193 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~--P~~----~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~------~~-~a~~~lA~~~~~  193 (235)
                      +++++|++.|+++++..  .+.    .+.+..+|.++.+.|+|++|++.|+++....-+      .+ +.++..+.|+..
T Consensus       129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~  208 (282)
T PF14938_consen  129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA  208 (282)
T ss_dssp             --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence            46899999999999862  112    356788899999999999999999999985422      12 345567789999


Q ss_pred             cCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHh
Q 026642          194 MGKLSTAKRLFKDILKERPLL-----LRALHDLGRYVS  226 (235)
Q Consensus       194 ~g~~~~A~~~l~kaL~~~P~~-----~~a~~~l~~~~~  226 (235)
                      +||+..|.+.+++....+|..     .....++...+.
T Consensus       209 ~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~  246 (282)
T PF14938_consen  209 MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE  246 (282)
T ss_dssp             TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999976     344444444443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.36  E-value=0.00037  Score=40.16  Aligned_cols=33  Identities=30%  Similarity=0.477  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE  180 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~  180 (235)
                      +++..+|.++.+.|++++|++.|+++++..|+.
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            578999999999999999999999999999974

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.31  E-value=0.00046  Score=41.38  Aligned_cols=24  Identities=17%  Similarity=0.271  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          150 LKVVMQGNMRRGRNKEALEFVKRL  173 (235)
Q Consensus       150 ~~~la~~~~~~g~~~eAi~~l~ka  173 (235)
                      |..||.+|.+.|+|++|+++|+++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445555555555555555555553

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.00091  Score=60.31  Aligned_cols=103  Identities=15%  Similarity=0.099  Sum_probs=81.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------hhCC------------C
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLI--------------DIEP------------N  179 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai--------------~l~P------------~  179 (235)
                      -++|++|...|+-+.+.+.-+.+.|..|+..++-.|.|.||.....++-              +++-            +
T Consensus        70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD  149 (557)
T KOG3785|consen   70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD  149 (557)
T ss_pred             hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence            4568999999999999888889999999999999999999987755432              2221            1


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          180 EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       180 ~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ..+-...+|-+.+....|.+|++.|.++|..+|+....-..++++|.+.
T Consensus       150 ~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKl  198 (557)
T KOG3785|consen  150 TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKL  198 (557)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhc
Confidence            2344556788888888899999999999999998877777788887764

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.23  E-value=0.00068  Score=40.60  Aligned_cols=32  Identities=16%  Similarity=0.091  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCC
Q 026642          183 WKLLQALCYELMGKLSTAKRLFKDIL--KERPLL  214 (235)
Q Consensus       183 a~~~lA~~~~~~g~~~~A~~~l~kaL--~~~P~~  214 (235)
                      ++..+|.+|..+|+|++|+++|+++|  ..+|++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence            47899999999999999999999955  555544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.23  E-value=0.0038  Score=50.33  Aligned_cols=85  Identities=22%  Similarity=0.220  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      .++++..+...--..|+.++.-..-|.+++..|+|.+|+..++.+.+..|..+.+.-.+|.|++.+||.+ =..+-++++
T Consensus        26 ~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evl  104 (160)
T PF09613_consen   26 PDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS-WRRYADEVL  104 (160)
T ss_pred             hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-HHHHHHHHH
Confidence            5677778877778899999999999999999999999999999999999999999999999999999974 223345666


Q ss_pred             HHCCCC
Q 026642          209 KERPLL  214 (235)
Q Consensus       209 ~~~P~~  214 (235)
                      +..++.
T Consensus       105 e~~~d~  110 (160)
T PF09613_consen  105 ESGADP  110 (160)
T ss_pred             hcCCCh
Confidence            666544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.23  E-value=0.0055  Score=47.84  Aligned_cols=52  Identities=19%  Similarity=0.034  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          181 VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       181 ~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ..+...++..+...|++++|+..+++++..+|.+..+|..+..+|.+.++..
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~  113 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRA  113 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHH
Confidence            3455667888999999999999999999999999999999999999888754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.0021  Score=57.40  Aligned_cols=100  Identities=16%  Similarity=0.177  Sum_probs=80.6

Q ss_pred             chHHHHHHHHhc---CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 026642          115 ASENLKEKRDAL---MGKSEVEEMFEKLLEKEPR----NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQ  187 (235)
Q Consensus       115 ~~~~~~e~~~~~---~~~~eA~~~~e~aL~~~P~----~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~l  187 (235)
                      .+..+.++++.-   ..+..|+..|.+.|+.+-.    ++..|.+.+.+.+..|+|..|+....+++.++|.+..+++.=
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            344566655542   3467899999999987433    445678888889999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          188 ALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       188 A~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      |.|+..+.++++|...++..++.+-+.
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            999999999888888888887776554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.17  E-value=0.00071  Score=57.60  Aligned_cols=57  Identities=16%  Similarity=0.230  Sum_probs=29.7

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          158 MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       158 ~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      .+.++.+.|.+.|.+++++-|++...|+.+|......|+++.|.+.|++.++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344455555555555555555555555555555555555555555555555555544

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.16  E-value=0.0023  Score=42.10  Aligned_cols=39  Identities=23%  Similarity=0.433  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 026642          150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQA  188 (235)
Q Consensus       150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA  188 (235)
                      ++.++..+.+.|+|++|.++.+.+++.+|++.++...+.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            344444445555555555555555555555544444433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.15  E-value=0.004  Score=51.73  Aligned_cols=91  Identities=11%  Similarity=0.075  Sum_probs=61.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPR-N--VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKL  197 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~-~--~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~  197 (235)
                      ...+.+++++|+..+++++...-+ +  .-+-.+|+++.+++|++|+|+..++...+  ++. ...-..+|.++...|+-
T Consensus        98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k  175 (207)
T COG2976          98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDK  175 (207)
T ss_pred             HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCch
Confidence            334455677888888877754221 1  12456678888888888888888776533  222 33455678888888888


Q ss_pred             HHHHHHHHHHHHHCCCC
Q 026642          198 STAKRLFKDILKERPLL  214 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~  214 (235)
                      ++|+..|+++++.++..
T Consensus       176 ~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         176 QEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHHHHHHHHHccCCh
Confidence            88888888888887544

>PLN03077 Protein ECB2; Provisional

Probab=97.15  E-value=0.0077  Score=60.52  Aligned_cols=106  Identities=12%  Similarity=0.199  Sum_probs=67.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI--EPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l--~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      .....++.++|.+.|++.    +.|...|..+...|.+.|+.++|++.|++..+.  .|+... +..+-.++...|+.++
T Consensus       533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~e  607 (857)
T PLN03077        533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQ  607 (857)
T ss_pred             HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHH
Confidence            333345567777777665    456777888888888888888888888877663  455433 3333345677777777


Q ss_pred             HHHHHHHHHHHCCCC--HHHHHHHHHHHhhchhhc
Q 026642          200 AKRLFKDILKERPLL--LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       200 A~~~l~kaL~~~P~~--~~a~~~l~~~~~~~~~~~  232 (235)
                      |.+.|+.+.+.+.-.  ...|.-++.++.+.++.+
T Consensus       608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~  642 (857)
T PLN03077        608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT  642 (857)
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence            777777776443222  455666666666666543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.15  E-value=0.0022  Score=46.79  Aligned_cols=50  Identities=8%  Similarity=0.147  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          165 EALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       165 eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      ..+..+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.++++
T Consensus         6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            35778999999999999999999999999999999999999999999877

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.13  E-value=0.0044  Score=55.63  Aligned_cols=102  Identities=17%  Similarity=0.170  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI-EPNE---VEWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l-~P~~---~~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      .-+|...+++.|+..|.|.-++..--.+++-+|+.+.-...++|++-. +++-   ....-.+|-.+...|-|++|.+..
T Consensus       119 ~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A  198 (491)
T KOG2610|consen  119 HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQA  198 (491)
T ss_pred             ccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHH
Confidence            356777889999999999999999999999999999999999999987 7776   444556778899999999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          205 KDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      ++++++++.+.-+.+.++-++.....
T Consensus       199 ~ralqiN~~D~Wa~Ha~aHVlem~~r  224 (491)
T KOG2610|consen  199 DRALQINRFDCWASHAKAHVLEMNGR  224 (491)
T ss_pred             HhhccCCCcchHHHHHHHHHHHhcch
Confidence            99999999999998888888766554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.0056  Score=58.18  Aligned_cols=95  Identities=14%  Similarity=0.048  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      .|+|+..++   -.++.+...+...|+++.++|+|++|++.|+.+++.+-++.+........-....   .... +.+.+
T Consensus        95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~---l~~~-~~q~v  167 (652)
T KOG2376|consen   95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA---LQVQ-LLQSV  167 (652)
T ss_pred             HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---hhHH-HHHhc
Confidence            467777766   3466777789999999999999999999999999988887766554333221110   0111 44555


Q ss_pred             HHCCCC-HHHHHHHHHHHhhchh
Q 026642          209 KERPLL-LRALHDLGRYVSMTLQ  230 (235)
Q Consensus       209 ~~~P~~-~~a~~~l~~~~~~~~~  230 (235)
                      ...|++ -..+||.+-.+...++
T Consensus       168 ~~v~e~syel~yN~Ac~~i~~gk  190 (652)
T KOG2376|consen  168 PEVPEDSYELLYNTACILIENGK  190 (652)
T ss_pred             cCCCcchHHHHHHHHHHHHhccc
Confidence            556654 6788888888776655

>smart00028 TPR Tetratricopeptide repeats

Probab=97.07  E-value=0.00095  Score=36.64  Aligned_cols=31  Identities=16%  Similarity=0.156  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642          183 WKLLQALCYELMGKLSTAKRLFKDILKERPL  213 (235)
Q Consensus       183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~  213 (235)
                      ++..+|.++..+|++++|+..++++++.+|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4455555555555555555555555555553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.06  E-value=0.0022  Score=56.87  Aligned_cols=67  Identities=13%  Similarity=0.209  Sum_probs=53.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 026642          156 GNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLG  222 (235)
Q Consensus       156 ~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~  222 (235)
                      -..++|+.+.|...++.+++++|+++++...+|......++.-+|-.+|-++|..+|.|.+++.+..
T Consensus       125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            3456788888888888888888888888888888888888888888888888888888877776654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.05  E-value=0.0042  Score=40.79  Aligned_cols=40  Identities=18%  Similarity=0.122  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 026642          182 EWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL  221 (235)
Q Consensus       182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l  221 (235)
                      +..+.+|..++.+|+|++|.++.+.+|+.+|+|..+..-.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            4678899999999999999999999999999996555433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.98  E-value=0.01  Score=49.37  Aligned_cols=101  Identities=13%  Similarity=0.011  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 026642          131 EVEEMFEKLLEKEPRNVE---ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       131 eA~~~~e~aL~~~P~~~~---a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      +.+...++....++.+..   +...++..+...|++++|+..++.++..--|.   .-+..++|+++...|++|+|.+.+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            666667777777777765   45677889999999999999999999765443   346678999999999999999999


Q ss_pred             HHHHHHCCCC-HHHHHHHHHHHhhchhhcc
Q 026642          205 KDILKERPLL-LRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       205 ~kaL~~~P~~-~~a~~~l~~~~~~~~~~~~  233 (235)
                      +..-  ++.. .....-.|.++..+++..+
T Consensus       150 ~t~~--~~~w~~~~~elrGDill~kg~k~~  177 (207)
T COG2976         150 DTIK--EESWAAIVAELRGDILLAKGDKQE  177 (207)
T ss_pred             hccc--cccHHHHHHHHhhhHHHHcCchHH
Confidence            7763  2222 4455667777777776543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.97  E-value=0.03  Score=51.15  Aligned_cols=97  Identities=14%  Similarity=0.113  Sum_probs=74.7

Q ss_pred             HHHHHHHh---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhCCC-----
Q 026642          118 NLKEKRDA---LMGKSEVEEMFEK-LLEKEPRNVEALKVVMQGNMR---------RGRNKEALEFVKRLIDIEPN-----  179 (235)
Q Consensus       118 ~~~e~~~~---~~~~~eA~~~~e~-aL~~~P~~~~a~~~la~~~~~---------~g~~~eAi~~l~kai~l~P~-----  179 (235)
                      .|.-..+.   .++.++|++.+.+ +...++.+++.+-.+|++|-+         ....++|+.+|.++.+.+|+     
T Consensus       184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI  263 (374)
T PF13281_consen  184 QYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI  263 (374)
T ss_pred             HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH
Confidence            34444444   7889999999999 555678899999999999855         23478999999999999876     


Q ss_pred             ----------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          180 ----------------------------------------EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       180 ----------------------------------------~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                                                              +......++.+....|++++|.+.+++++++.|..
T Consensus       264 N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  264 NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence                                                    12222346677777888889999999988888776

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.97  E-value=0.0024  Score=56.64  Aligned_cols=71  Identities=18%  Similarity=0.086  Sum_probs=64.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC  190 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~  190 (235)
                      ..+....+..++|...|+.+++.+|.+++++..+|......++.-+|-++|-+++.++|.+.++..++++.
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            34445566789999999999999999999999999999999999999999999999999999999988753

>smart00028 TPR Tetratricopeptide repeats

Probab=96.95  E-value=0.0014  Score=35.86  Aligned_cols=33  Identities=30%  Similarity=0.567  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE  180 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~  180 (235)
                      +++..+|.++...|++++|+.+++++++.+|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.94  E-value=0.0017  Score=59.52  Aligned_cols=110  Identities=15%  Similarity=0.057  Sum_probs=83.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHH------HHHhhCCCCHHHHHHHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVE----ALKVVMQGNMRRGRNKEALEFVK------RLIDIEPNEVEWKLLQALC  190 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~----a~~~la~~~~~~g~~~eAi~~l~------kai~l~P~~~~a~~~lA~~  190 (235)
                      +..-..+++...+..|+.+++..-+|..    .|..||..|+-.++|++|+++-.      +.+--.-..+..--++|.+
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            3444455678889999999998766654    56788999999999999998843      3332223345666789999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHhhchh
Q 026642          191 YELMGKLSTAKRLFKDILKERP--LL----LRALHDLGRYVSMTLQ  230 (235)
Q Consensus       191 ~~~~g~~~~A~~~l~kaL~~~P--~~----~~a~~~l~~~~~~~~~  230 (235)
                      +..+|.|++|+-+..+-|...-  ++    .+++|++|.+|+.++.
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk  150 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK  150 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence            9999999999999888665332  12    7899999999998875

>PRK10941 hypothetical protein; Provisional

Probab=96.93  E-value=0.013  Score=51.33  Aligned_cols=72  Identities=11%  Similarity=0.004  Sum_probs=65.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL  193 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~  193 (235)
                      ....+++++.|.++.+..+..+|+++.-+...|.+|.+.|.+..|...++.-++..|+++.+...+.++...
T Consensus       190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l  261 (269)
T PRK10941        190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI  261 (269)
T ss_pred             HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            334566789999999999999999999999999999999999999999999999999999998888776543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.0056  Score=53.32  Aligned_cols=103  Identities=13%  Similarity=0.101  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----C--CCHHHHHHHHHHHHHcCCHHHH
Q 026642          128 GKSEVEEMFEKLLEKE-PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE----P--NEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~-P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~----P--~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ++.-....+.++++.+ |.++.....||.+.++-|+.+.|..+++++-+..    .  ++.....+.+.+|...++|..|
T Consensus       192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a  271 (366)
T KOG2796|consen  192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEA  271 (366)
T ss_pred             hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHH
Confidence            3455678899999988 7889999999999999999999999999665432    2  2345566788899999999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          201 KRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      ...|.+++..||.++-+..+.+++..-.++
T Consensus       272 ~r~~~~i~~~D~~~~~a~NnKALcllYlg~  301 (366)
T KOG2796|consen  272 HRFFTEILRMDPRNAVANNNKALCLLYLGK  301 (366)
T ss_pred             HHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence            999999999999998888887777554444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.87  E-value=0.0081  Score=47.84  Aligned_cols=86  Identities=19%  Similarity=0.133  Sum_probs=70.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      +.++++..+...--..|+.++.-..-|.+++..|+|++|+..++.+.+-.+..+...-.++.|++.+||.+= ..+-+++
T Consensus        25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W-r~~A~~~  103 (153)
T TIGR02561        25 DPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW-HVHADEV  103 (153)
T ss_pred             CHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH-HHHHHHH
Confidence            356777777777778999999999999999999999999999999999988999999999999999999742 2233344


Q ss_pred             HHHCCCC
Q 026642          208 LKERPLL  214 (235)
Q Consensus       208 L~~~P~~  214 (235)
                      ++.+++.
T Consensus       104 le~~~~~  110 (153)
T TIGR02561       104 LARDADA  110 (153)
T ss_pred             HHhCCCH
Confidence            5554443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.84  E-value=0.022  Score=45.96  Aligned_cols=84  Identities=20%  Similarity=0.195  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      ..++..+...-.+.++.+++...++-+--+.|+.++....-|.++...|+|++|+..++.+....|....+---++.++.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            34666777777888999999999999999999999999999999999999999999999999999988766666666666


Q ss_pred             hchh
Q 026642          227 MTLQ  230 (235)
Q Consensus       227 ~~~~  230 (235)
                      ..+|
T Consensus        90 ~~~D   93 (160)
T PF09613_consen   90 ALGD   93 (160)
T ss_pred             HcCC
Confidence            6555

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.0098  Score=52.34  Aligned_cols=99  Identities=19%  Similarity=0.232  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH------
Q 026642          133 EEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD------  206 (235)
Q Consensus       133 ~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k------  206 (235)
                      .+++.+.+-.   ..+.-..-+.-.+..|++.+|...+..++..+|++.++...+|.+|...|+.+.|...+..      
T Consensus       123 r~~ld~~~~~---~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~  199 (304)
T COG3118         123 RQFLDKVLPA---EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ  199 (304)
T ss_pred             HHHHHHhcCh---HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence            4455555443   4455666677788999999999999999999999999999999999999999766554433      


Q ss_pred             ----------------------------HHHHCCCCHHHHHHHHHHHhhchhhccc
Q 026642          207 ----------------------------ILKERPLLLRALHDLGRYVSMTLQIQSL  234 (235)
Q Consensus       207 ----------------------------aL~~~P~~~~a~~~l~~~~~~~~~~~~~  234 (235)
                                                  .+..+|+|..+-+.++..++..++.++.
T Consensus       200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~A  255 (304)
T COG3118         200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAA  255 (304)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence                                        3445678888888888887777766543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.80  E-value=0.022  Score=49.94  Aligned_cols=89  Identities=16%  Similarity=0.084  Sum_probs=76.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV---EWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~---~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      .+.+.|..+|+.+++..|++.+.|......++..|+.+.|-..|++++..-+...   ..|......-...|+.+...+.
T Consensus        50 ~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v  129 (280)
T PF05843_consen   50 KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKV  129 (280)
T ss_dssp             S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4456699999999999999999999999999999999999999999999866655   5778888888999999999999


Q ss_pred             HHHHHHHCCCCH
Q 026642          204 FKDILKERPLLL  215 (235)
Q Consensus       204 l~kaL~~~P~~~  215 (235)
                      .+++.+..|++.
T Consensus       130 ~~R~~~~~~~~~  141 (280)
T PF05843_consen  130 EKRAEELFPEDN  141 (280)
T ss_dssp             HHHHHHHTTTS-
T ss_pred             HHHHHHHhhhhh
Confidence            999999999853

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.79  E-value=0.028  Score=52.77  Aligned_cols=93  Identities=12%  Similarity=0.103  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 026642          131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK-LSTAKRLFKDILK  209 (235)
Q Consensus       131 eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~-~~~A~~~l~kaL~  209 (235)
                      .-...|+.++..-+.|+..|.....-..+.+.+.+--..|.+++..+|++++.|..-|.=.+.-+. .+.|.+.|.+.|.
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            345789999999999999999998877777779999999999999999999999998876666666 9999999999999


Q ss_pred             HCCCCHHHHHHHHH
Q 026642          210 ERPLLLRALHDLGR  223 (235)
Q Consensus       210 ~~P~~~~a~~~l~~  223 (235)
                      .+|+.+..|.....
T Consensus       169 ~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  169 FNPDSPKLWKEYFR  182 (568)
T ss_pred             cCCCChHHHHHHHH
Confidence            99999877754433

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.78  E-value=0.023  Score=49.47  Aligned_cols=86  Identities=20%  Similarity=0.188  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK-RLFKDIL  208 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~-~~l~kaL  208 (235)
                      .+|.=+|++.-++.+-.+..+.+.+.+.+.+|+|++|...++.++..++++++...++-.+-...|...++. +.+.+..
T Consensus       190 qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  190 QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            445567888888788889999999999999999999999999999999999999999999988898886655 4557777


Q ss_pred             HHCCCCH
Q 026642          209 KERPLLL  215 (235)
Q Consensus       209 ~~~P~~~  215 (235)
                      ..+|.++
T Consensus       270 ~~~p~h~  276 (299)
T KOG3081|consen  270 LSHPEHP  276 (299)
T ss_pred             hcCCcch
Confidence            8888884

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.0086  Score=53.54  Aligned_cols=84  Identities=17%  Similarity=0.078  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE----VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL  221 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~----~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l  221 (235)
                      .++-+..=|.-|++.++|..|+..|.+.|+..-.+    +..|.++|.+....|+|..|+....++++.+|.+..+++.-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            34556677999999999999999999999976554    45688999999999999999999999999999999998877


Q ss_pred             HHHHhhch
Q 026642          222 GRYVSMTL  229 (235)
Q Consensus       222 ~~~~~~~~  229 (235)
                      +.+.....
T Consensus       160 Akc~~eLe  167 (390)
T KOG0551|consen  160 AKCLLELE  167 (390)
T ss_pred             hHHHHHHH
Confidence            77655443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.70  E-value=0.065  Score=41.34  Aligned_cols=89  Identities=17%  Similarity=0.128  Sum_probs=65.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hhCCCCH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEP------------RNVEALKVVMQGNMRRGRNKEALEFVKRLI-------DIEPNEV  181 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P------------~~~~a~~~la~~~~~~g~~~eAi~~l~kai-------~l~P~~~  181 (235)
                      ++......+++|...+.++.+...            -|+-.+..|+..+...|+|++++...++++       +++.+..
T Consensus        17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG   96 (144)
T PF12968_consen   17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG   96 (144)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence            344445668899988888887532            144567888899999999999877766666       4666665


Q ss_pred             HHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642          182 EWK----LLQALCYELMGKLSTAKRLFKDILK  209 (235)
Q Consensus       182 ~a~----~~lA~~~~~~g~~~~A~~~l~kaL~  209 (235)
                      ..|    +.+|.++...|+.++|++.|+.+-+
T Consensus        97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            555    4689999999999999999998765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.67  E-value=0.026  Score=56.70  Aligned_cols=106  Identities=15%  Similarity=-0.010  Sum_probs=77.7

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRNV-----EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYEL  193 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~~-----~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~  193 (235)
                      ..+++++|...++++++..+...     .++..+|.++...|++++|...++++++.....      ...+..+|.++..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            35578999999999998544322     356778889999999999999999999764321      2455678999999


Q ss_pred             cCCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHhhchh
Q 026642          194 MGKLSTAKRLFKDILKERPL--------LLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       194 ~g~~~~A~~~l~kaL~~~P~--------~~~a~~~l~~~~~~~~~  230 (235)
                      .|++++|...+++++.....        ....+..++.++...++
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~  588 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR  588 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence            99999999999999885221        12334455555555544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.0051  Score=54.49  Aligned_cols=73  Identities=12%  Similarity=0.118  Sum_probs=65.7

Q ss_pred             HHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          139 LLEKEP--RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       139 aL~~~P--~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                      .+++-|  ++++.....|.+.++.|++++|++-++.+++....++..-+++|.+++..|+|+.|.++..++++..
T Consensus       134 LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  134 LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            445545  7889999999999999999999999999999999999999999999999999999999988877643

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.61  E-value=0.023  Score=49.92  Aligned_cols=79  Identities=24%  Similarity=0.330  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK  209 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~  209 (235)
                      ...+...+++++.  ....++..++..+...|+++.++..+++++..+|.+-..|..+..+|+..|+..+|+..|+++-+
T Consensus       138 ~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         138 DEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            3444444444443  34678889999999999999999999999999999999999999999999999999999998866


Q ss_pred             H
Q 026642          210 E  210 (235)
Q Consensus       210 ~  210 (235)
                      .
T Consensus       216 ~  216 (280)
T COG3629         216 T  216 (280)
T ss_pred             H
Confidence            4

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.58  E-value=0.033  Score=57.68  Aligned_cols=99  Identities=18%  Similarity=0.162  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN--EVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~--~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ++|.++|+..++.--+....|..++..++++++-++|-..+++|++-=|.  ..+.....|++.+..||-+.+...|+-.
T Consensus      1547 ~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1547 DEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred             hhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence            44444444444444444445555555555555444555555555544444  3444444455555555555555555555


Q ss_pred             HHHCCCCHHHHHHHHHHHhhc
Q 026642          208 LKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~  228 (235)
                      |.-+|.-...|.-++..-.+.
T Consensus      1627 l~ayPKRtDlW~VYid~eik~ 1647 (1710)
T KOG1070|consen 1627 LSAYPKRTDLWSVYIDMEIKH 1647 (1710)
T ss_pred             HhhCccchhHHHHHHHHHHcc
Confidence            555555444444444444443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.012  Score=51.18  Aligned_cols=69  Identities=20%  Similarity=0.168  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642          150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~  218 (235)
                      ...+=..+.+.++++.|..+.++++.++|+++.-+..+|.+|.++|-+.-|+..++..++.-|++..+-
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            444555788999999999999999999999999999999999999999999999999999999995443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.51  E-value=0.04  Score=51.59  Aligned_cols=107  Identities=16%  Similarity=0.150  Sum_probs=86.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHH-HHHHHHHHHHcCC
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEW-KLLQALCYELMGK  196 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a-~~~lA~~~~~~g~  196 (235)
                      |.+-.....+.|....+|++.|+-.|.|-.+|...|.+-...|+.+.|-..|+-|+...--+ ++. |-..-.--...|+
T Consensus       443 YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E  522 (677)
T KOG1915|consen  443 YIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE  522 (677)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence            55555555668999999999999999999999999999999999999999999999875444 332 2233455677899


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642          197 LSTAKRLFKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      +++|.++|+++|+..+. ..+|...+..-.
T Consensus       523 ~ekaR~LYerlL~rt~h-~kvWisFA~fe~  551 (677)
T KOG1915|consen  523 FEKARALYERLLDRTQH-VKVWISFAKFEA  551 (677)
T ss_pred             HHHHHHHHHHHHHhccc-chHHHhHHHHhc
Confidence            99999999999987754 558877777654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.47  E-value=0.078  Score=43.65  Aligned_cols=102  Identities=14%  Similarity=0.087  Sum_probs=68.3

Q ss_pred             CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------------
Q 026642          128 GKSEVEEMFEKLLEKEPRN--VEALKVVMQGNMRRGRNKEALEFVKRLIDIE----------------------------  177 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~--~~a~~~la~~~~~~g~~~eAi~~l~kai~l~----------------------------  177 (235)
                      ..++|...|..+-+.+-.+  .-+....+-+..+.|+..+|+.+|+.+-.-.                            
T Consensus        73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~  152 (221)
T COG4649          73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVS  152 (221)
T ss_pred             CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHH
Confidence            3567777766654443222  2345555666677777777777766543322                            


Q ss_pred             -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          178 -----------PNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       178 -----------P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                                 |--..++-.||..-+..|++.+|.+.|.++.. |.+.++...+.+.++....+
T Consensus       153 srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldlI~  215 (221)
T COG4649         153 SRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDLID  215 (221)
T ss_pred             HHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHHHh
Confidence                       22346677789999999999999999988865 66667777777777766544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.46  E-value=0.043  Score=55.11  Aligned_cols=106  Identities=13%  Similarity=0.035  Sum_probs=77.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPR---------NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-----EWKLLQALCY  191 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~---------~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-----~a~~~lA~~~  191 (235)
                      .+++++|...++++.+.-+.         ..+....++.++...|++++|..+++++++..+...     .+...+|.++
T Consensus       422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~  501 (903)
T PRK04841        422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH  501 (903)
T ss_pred             CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence            44678888888877654221         234556678888999999999999999998655432     3456789999


Q ss_pred             HHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhchhh
Q 026642          192 ELMGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMTLQI  231 (235)
Q Consensus       192 ~~~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~~~~  231 (235)
                      ...|++++|...+++++......      ..++.+++.++...++.
T Consensus       502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~  547 (903)
T PRK04841        502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL  547 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH
Confidence            99999999999999998764432      34556677777666653

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.43  E-value=0.05  Score=51.15  Aligned_cols=80  Identities=13%  Similarity=0.058  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPN--EVEWKLLQALCYELMGKLSTAKRLFKDILKE-RPLLLRALHDLGRY  224 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~--~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~-~P~~~~a~~~l~~~  224 (235)
                      .+...+|.+.-+.|+.+||++.+..+++.+|.  +...+.++..++..+++|+++...+.+.-+. -|+.+...+..+++
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            34567888889999999999999999998876  4568999999999999999999999886432 25566666766666


Q ss_pred             Hhh
Q 026642          225 VSM  227 (235)
Q Consensus       225 ~~~  227 (235)
                      -.+
T Consensus       340 kaR  342 (539)
T PF04184_consen  340 KAR  342 (539)
T ss_pred             HHH
Confidence            443

The molecular function of this protein is uncertain.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.39  E-value=0.034  Score=57.59  Aligned_cols=104  Identities=13%  Similarity=0.095  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      .+.-.+.|++|.+.. +--..+..|..+|.+.+++++|.+.|+..++..-.....|..+|..+....+-++|...++++|
T Consensus      1513 eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1513 EESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred             HHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            344557777776642 3346777888888888888888888888888777777888888888888888888888888888


Q ss_pred             HHCCC--CHHHHHHHHHHHhhchhhcc
Q 026642          209 KERPL--LLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       209 ~~~P~--~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +.-|.  |+....-.+.+..+.+|.+.
T Consensus      1592 ~~lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred             hhcchhhhHHHHHHHHHHHhhcCCchh
Confidence            88887  67888888888887777654

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.33  E-value=0.12  Score=40.73  Aligned_cols=73  Identities=16%  Similarity=0.167  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642          146 NVEALKVVMQGNMRRGR---NKEALEFVKRLID-IEPNE-VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~---~~eAi~~l~kai~-l~P~~-~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~  218 (235)
                      ..+..+++++.+....+   ..+.+.+++.+++ -.|+. -+..+.+|..++..|+|++++++.+.+++.+|+|..+.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            45677888888887655   5578999999997 55654 56788899999999999999999999999999995544

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.33  E-value=0.022  Score=53.93  Aligned_cols=74  Identities=12%  Similarity=0.173  Sum_probs=68.3

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          137 EKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       137 e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                      ++.++.||.|+++|..|.+-+..+ .++++-+.|++.+...|..+.+|-......+...+|+.-.+.|.++|..-
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv   83 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV   83 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            667889999999999999988777 99999999999999999999999999999999999999999999988644

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.30  E-value=0.027  Score=53.86  Aligned_cols=98  Identities=15%  Similarity=0.109  Sum_probs=85.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVE-ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~-a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      +...|+.++..++...|...+ ...+|+.+.++.|-..+|-..+.+++.++-..+-..+.+|.+|..+.+.++|++.|+.
T Consensus       622 n~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~  701 (886)
T KOG4507|consen  622 NSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQ  701 (886)
T ss_pred             CcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHH
Confidence            357899999999998886544 5788999999999889999999999999988899999999999999999999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHH
Q 026642          207 ILKERPLLLRALHDLGRYV  225 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~  225 (235)
                      +++++|++...-..|..+-
T Consensus       702 a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  702 ALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHhcCCCChhhHHHHHHHH
Confidence            9999999976665555443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.21  E-value=0.014  Score=53.03  Aligned_cols=108  Identities=17%  Similarity=0.081  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----C------HHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNV------EALKVVMQGNMRRGRNKEALEFVKRLIDIEPN----E------VEWKLLQALCY  191 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~------~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~----~------~~a~~~lA~~~  191 (235)
                      .++++.+.|+.+++.-.++.      ..+..||.++.+.+++++|+-+..++.++--.    +      .-..+.+++.|
T Consensus       137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal  216 (518)
T KOG1941|consen  137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL  216 (518)
T ss_pred             HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence            36888999999988633322      46788999999999999999999999987533    1      23456689999


Q ss_pred             HHcCCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHhhchhhcccC
Q 026642          192 ELMGKLSTAKRLFKDILKERP--LL----LRALHDLGRYVSMTLQIQSLF  235 (235)
Q Consensus       192 ~~~g~~~~A~~~l~kaL~~~P--~~----~~a~~~l~~~~~~~~~~~~~f  235 (235)
                      ..+|+...|.++.+++.++.-  .|    .+-+.-++.+|..++|.+..|
T Consensus       217 R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af  266 (518)
T KOG1941|consen  217 RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF  266 (518)
T ss_pred             HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence            999999999999999876542  22    666778888999998877655

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.18  E-value=0.0012  Score=58.95  Aligned_cols=64  Identities=16%  Similarity=0.148  Sum_probs=58.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642          155 QGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       155 ~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~  218 (235)
                      .-.+..|++++|++.+.++|+++|.....+..+|.++..+++...|++.|..+++++|+...-|
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~y  185 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGY  185 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccccc
Confidence            3345678999999999999999999999999999999999999999999999999999985443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.16  E-value=0.0068  Score=51.75  Aligned_cols=57  Identities=12%  Similarity=0.196  Sum_probs=52.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE  182 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~  182 (235)
                      ..+.+.|.+.|.++++.-|.....|..+|....+.|+++.|.+.|+++++++|++-.
T Consensus         8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            445678899999999999999999999999999999999999999999999998754

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.15  E-value=0.051  Score=52.28  Aligned_cols=99  Identities=12%  Similarity=0.030  Sum_probs=72.6

Q ss_pred             cCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 026642          126 LMGKSEVEEMFEKLLE-----KEPRNVEALKVVMQGNMRRG-----RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG  195 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~-----~~P~~~~a~~~la~~~~~~g-----~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g  195 (235)
                      .++.+.|+.+|+.+++     ..-.++.+...+|.+|.+..     +++.|+.+|.++.+++  ++++.+.+|+++....
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~  339 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT  339 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC
Confidence            3456777877777766     11125667888888888843     6778888888888775  6777778888877766


Q ss_pred             ---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          196 ---KLSTAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       196 ---~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                         ++.+|.++|..+.+.-  ++.++++++.+|...
T Consensus       340 ~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G  373 (552)
T KOG1550|consen  340 KERDYRRAFEYYSLAAKAG--HILAIYRLALCYELG  373 (552)
T ss_pred             ccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhC
Confidence               5678888888886554  788888888887654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.05  E-value=0.074  Score=52.92  Aligned_cols=99  Identities=13%  Similarity=0.074  Sum_probs=82.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      +..++|..+++..-...++|...+..+-.+|-++|++++|..+|++++..+|+ .+....+=.+|.+.++|.+-.+.--+
T Consensus        57 gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~  135 (932)
T KOG2053|consen   57 GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQ  135 (932)
T ss_pred             cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34788888887777778889999999999999999999999999999999999 77777888889999999887777777


Q ss_pred             HHHHCCCCHHHHHHHHHHHh
Q 026642          207 ILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~~  226 (235)
                      ..+.-|++...+....-++.
T Consensus       136 LyK~~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen  136 LYKNFPKRAYYFWSVISLIL  155 (932)
T ss_pred             HHHhCCcccchHHHHHHHHH
Confidence            77888988665555444433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.03  E-value=0.055  Score=50.71  Aligned_cols=87  Identities=17%  Similarity=0.231  Sum_probs=77.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ++..|..+|+++|.-|-.+...|...+..-++.+....|-..+++++.+=|.-...|+..-.+-..+|+...|.+.|++=
T Consensus        88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW  167 (677)
T KOG1915|consen   88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW  167 (677)
T ss_pred             HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            35778899999999999999999999999999999999999999999998988888888888888889999999999998


Q ss_pred             HHHCCCC
Q 026642          208 LKERPLL  214 (235)
Q Consensus       208 L~~~P~~  214 (235)
                      ++..|+.
T Consensus       168 ~~w~P~e  174 (677)
T KOG1915|consen  168 MEWEPDE  174 (677)
T ss_pred             HcCCCcH
Confidence            8888874

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.99  E-value=0.013  Score=53.86  Aligned_cols=103  Identities=17%  Similarity=0.073  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC--CHHHHHHHHHHHHHcC
Q 026642          128 GKSEVEEMFEKLLEKEP------RNVEALKVVMQGNMRRGRNKEALEFVKRLIDI----EPN--EVEWKLLQALCYELMG  195 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P------~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l----~P~--~~~a~~~lA~~~~~~g  195 (235)
                      +++.|+..-+.-|++..      ..-.|+.++|..++-.|+++.|+++|++.+.+    .-.  .++..+.+|..|....
T Consensus       210 df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~  289 (639)
T KOG1130|consen  210 DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLK  289 (639)
T ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHH
Confidence            34667666555554321      12357888999999999999999999887654    333  3455677999999999


Q ss_pred             CHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHhhchh
Q 026642          196 KLSTAKRLFKDILKER------PLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~------P~~~~a~~~l~~~~~~~~~  230 (235)
                      ++++|+.+.++-|+..      -...++++.||..+...+.
T Consensus       290 e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~  330 (639)
T KOG1130|consen  290 EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE  330 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence            9999999998866532      2237888888888776554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.95  E-value=0.066  Score=45.28  Aligned_cols=96  Identities=20%  Similarity=0.170  Sum_probs=67.2

Q ss_pred             CHHHHHHHHHHHHHh----C-CC--CHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhhCCC------CHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEK----E-PR--NVEALKVVMQGNMRRGRNK-------EALEFVKRLIDIEPN------EVEWKLLQ  187 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~----~-P~--~~~a~~~la~~~~~~g~~~-------eAi~~l~kai~l~P~------~~~a~~~l  187 (235)
                      .+++|++.|.-++-.    + +.  -+..+..+|++|-..|+.+       .|++.|+++++.+..      .....+.+
T Consensus        92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi  171 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI  171 (214)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence            357788777666532    2 22  2567788899998888844       567777777765432      35778889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCH-HHHHHHHH
Q 026642          188 ALCYELMGKLSTAKRLFKDILKERPLLL-RALHDLGR  223 (235)
Q Consensus       188 A~~~~~~g~~~~A~~~l~kaL~~~P~~~-~a~~~l~~  223 (235)
                      |.+.+..|++++|++.|.+++...-... ..+.+++.
T Consensus       172 geL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  172 GELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            9999999999999999999986544332 34444443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.86  E-value=0.023  Score=34.08  Aligned_cols=28  Identities=29%  Similarity=0.474  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLID  175 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~  175 (235)
                      .++..+|.+|..+|++++|+.+++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3445555555555555555555555554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.82  E-value=0.054  Score=51.06  Aligned_cols=87  Identities=22%  Similarity=0.268  Sum_probs=68.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCH---
Q 026642          126 LMGKSEVEEMFEKLLEKEPR----NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKL---  197 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~----~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~---  197 (235)
                      .++.++|++.|+++++....    ..-.+..++..++-+++|++|.+++.++++.+... .-+.+..|.|+...|+.   
T Consensus       280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~  359 (468)
T PF10300_consen  280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA  359 (468)
T ss_pred             hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence            45679999999988853221    23457888999999999999999999999987654 45667789999999999   


Q ss_pred             ----HHHHHHHHHHHHHCC
Q 026642          198 ----STAKRLFKDILKERP  212 (235)
Q Consensus       198 ----~~A~~~l~kaL~~~P  212 (235)
                          ++|.+.|+++-.+-.
T Consensus       360 ~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  360 KEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             hhhHHHHHHHHHHHHHHHh
Confidence                888888888765443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.80  E-value=0.027  Score=33.73  Aligned_cols=31  Identities=23%  Similarity=0.209  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          181 VEWKLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       181 ~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                      ...+.++|.+|..+|++++|.++++++++..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3567899999999999999999999998754

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.78  E-value=0.29  Score=43.23  Aligned_cols=113  Identities=13%  Similarity=0.109  Sum_probs=86.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC-C-------------
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKE----PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI-EP-N-------------  179 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~----P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l-~P-~-------------  179 (235)
                      +.+.-...+.++-|...+.++...+    ...+......+.+....|+.++|+..++..++. .. .             
T Consensus       152 ~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~  231 (352)
T PF02259_consen  152 FAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGL  231 (352)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcc
Confidence            3344455666788888888887754    225788888999999999999999999998881 11 0             


Q ss_pred             -------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          180 -------------------EVEWKLLQALCYELM------GKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       180 -------------------~~~a~~~lA~~~~~~------g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                                         .+.++..+|.-....      ++.+++.+.|+++++.+|+...+|+.+|..+.+..+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~  308 (352)
T PF02259_consen  232 LESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLES  308 (352)
T ss_pred             ccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence                               124455566655566      8889999999999999999999999999998776553

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=95.76  E-value=0.07  Score=45.40  Aligned_cols=58  Identities=10%  Similarity=0.078  Sum_probs=42.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE  180 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~  180 (235)
                      ..+....++++...++-++.+|.|......+-.+++-.|+|++|...++-+-+++|++
T Consensus        11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455          11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            3344456777777777777777777777777777777777777777777777777765

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.071  Score=46.50  Aligned_cols=70  Identities=14%  Similarity=0.070  Sum_probs=62.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCY  191 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~  191 (235)
                      ....+..++.|....++.+..+|+++..+.-.|.+|.+.|.+..|++.++..++.-|+++.+-..++++.
T Consensus       190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            4444566889999999999999999999999999999999999999999999999999998877777654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.68  E-value=0.16  Score=40.54  Aligned_cols=82  Identities=16%  Similarity=0.162  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ++..+...-...++.+++...++.+--+.|+.++....-|.++...|+|++|+..++.+.+..+..+..---++.++..+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            44445555566899999999999999999999999999999999999999999999999888877766655666666655


Q ss_pred             hh
Q 026642          229 LQ  230 (235)
Q Consensus       229 ~~  230 (235)
                      +|
T Consensus        92 ~D   93 (153)
T TIGR02561        92 GD   93 (153)
T ss_pred             CC
Confidence            55

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.63  E-value=0.055  Score=39.45  Aligned_cols=57  Identities=19%  Similarity=0.195  Sum_probs=45.5

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642          157 NMRRGRNKEALEFVKRLIDIEPNE---------VEWKLLQALCYELMGKLSTAKRLFKDILKERPL  213 (235)
Q Consensus       157 ~~~~g~~~eAi~~l~kai~l~P~~---------~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~  213 (235)
                      ..+.|+|.+|++.+.+..+.....         ..+...+|.++...|++++|++.+++++.+.-.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            467899999988888887754321         356778999999999999999999999885543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.59  E-value=0.048  Score=51.63  Aligned_cols=86  Identities=14%  Similarity=0.089  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR---GRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~---g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      ...|+..|.+++..-|.....+...+.++++.   |+--.|+.....++++||....+|+.++.++...+++.+|+++..
T Consensus       390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~  469 (758)
T KOG1310|consen  390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW  469 (758)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence            46789999999999999999999999999885   566678888999999999999999999999999999999999998


Q ss_pred             HHHHHCCCC
Q 026642          206 DILKERPLL  214 (235)
Q Consensus       206 kaL~~~P~~  214 (235)
                      .+....|.+
T Consensus       470 alq~~~Ptd  478 (758)
T KOG1310|consen  470 ALQMSFPTD  478 (758)
T ss_pred             HHhhcCchh
Confidence            888888855

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.53  E-value=0.02  Score=53.67  Aligned_cols=106  Identities=14%  Similarity=0.057  Sum_probs=82.8

Q ss_pred             cCCHHHHHHHHHH-HHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------hCC---------
Q 026642          126 LMGKSEVEEMFEK-LLEKEPR--------NVEALKVVMQGNMRRGRNKEALEFVKRLID---------IEP---------  178 (235)
Q Consensus       126 ~~~~~eA~~~~e~-aL~~~P~--------~~~a~~~la~~~~~~g~~~eAi~~l~kai~---------l~P---------  178 (235)
                      .+++.+|.+.+.. -++..|.        .--.|.++|.++++.|.|.-++.+|.++++         +.|         
T Consensus       253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n  332 (696)
T KOG2471|consen  253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN  332 (696)
T ss_pred             hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence            3455666655433 2223333        223578999999999999999999999996         112         


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          179 NEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       179 ~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      ..-+..++.|..|...|+.-.|.++|.++.+..-.+++.|..++.++....++
T Consensus       333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~  385 (696)
T KOG2471|consen  333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQK  385 (696)
T ss_pred             cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence            13577889999999999999999999999999999999999999998776553

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.50  E-value=0.32  Score=44.58  Aligned_cols=97  Identities=15%  Similarity=0.078  Sum_probs=74.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCCHHHHHHHHH
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEK----EPRNVEALKVVMQGNMR---RGRNKEALEFVKR-LIDIEPNEVEWKLLQAL  189 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~----~P~~~~a~~~la~~~~~---~g~~~eAi~~l~k-ai~l~P~~~~a~~~lA~  189 (235)
                      .+.-...+.++|+.-++..+..-..    -++.......+|.++.+   .|+.++|++.+.. +...++.+++.+...|.
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444455566688877777765554    45566777788888888   9999999999999 55566778999999999


Q ss_pred             HHHHc---------CCHHHHHHHHHHHHHHCCCC
Q 026642          190 CYELM---------GKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       190 ~~~~~---------g~~~~A~~~l~kaL~~~P~~  214 (235)
                      +|-.+         ...++|+..|.++.+.+|+.
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            87542         23689999999999999765

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.42  E-value=0.36  Score=41.89  Aligned_cols=54  Identities=26%  Similarity=0.323  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 026642          165 EALEFVKRLIDIEPNEVEWKLLQALCYELM-G---KLSTAKRLFKDILKERPLLLRALHDLG  222 (235)
Q Consensus       165 eAi~~l~kai~l~P~~~~a~~~lA~~~~~~-g---~~~~A~~~l~kaL~~~P~~~~a~~~l~  222 (235)
                      .|+..|.++-+..  ++.+.+.+|.+|..- |   ++++|...|.++-+...  ..+.+.++
T Consensus       173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            4444444444443  444444445444332 2   34455555555544443  44444444

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.40  E-value=0.32  Score=43.53  Aligned_cols=81  Identities=11%  Similarity=0.078  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHc--CCHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC-YELM--GKLSTAKRLFK  205 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~-~~~~--g~~~~A~~~l~  205 (235)
                      .+..+.+|++||+.+|++...+..+.....+..+-++..+-+++++..+|++...|..+-.. ....  -.+++..+.|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999998877764433 3322  34677777777


Q ss_pred             HHHH
Q 026642          206 DILK  209 (235)
Q Consensus       206 kaL~  209 (235)
                      ++|.
T Consensus       127 ~~l~  130 (321)
T PF08424_consen  127 KCLR  130 (321)
T ss_pred             HHHH
Confidence            7765

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.36  E-value=0.034  Score=49.56  Aligned_cols=88  Identities=9%  Similarity=0.017  Sum_probs=72.9

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642          135 MFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLL-QALCYELMGKLSTAKRLFKDILKERPL  213 (235)
Q Consensus       135 ~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~-lA~~~~~~g~~~~A~~~l~kaL~~~P~  213 (235)
                      .|.+....-++|+..|...+.-..+.|-|.+--..+.+++..+|.+++.|.. -+.=+...++.+.+...|.+.|..+|+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            3445556678899999998888888888999999999999999999998886 455678889999999999999999999


Q ss_pred             CHHHHHHHH
Q 026642          214 LLRALHDLG  222 (235)
Q Consensus       214 ~~~a~~~l~  222 (235)
                      ++..|.+..
T Consensus       175 ~p~iw~eyf  183 (435)
T COG5191         175 SPRIWIEYF  183 (435)
T ss_pred             CchHHHHHH
Confidence            977775443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.18  E-value=0.073  Score=31.98  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q 026642          148 EALKVVMQGNMRRGRNKEALEF--VKRLIDIEPN  179 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~--l~kai~l~P~  179 (235)
                      +.|..+|..+..+|++++|++.  |.-+..++++
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            3455555555555555555555  3355555443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.18  E-value=0.26  Score=42.39  Aligned_cols=99  Identities=11%  Similarity=0.055  Sum_probs=69.0

Q ss_pred             hHHHHHHHHh--cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC-H----
Q 026642          116 SENLKEKRDA--LMGKSEVEEMFEKLLEKEPR------NVEALKVVMQGNMRR-GRNKEALEFVKRLIDIEPNE-V----  181 (235)
Q Consensus       116 ~~~~~e~~~~--~~~~~eA~~~~e~aL~~~P~------~~~a~~~la~~~~~~-g~~~eAi~~l~kai~l~P~~-~----  181 (235)
                      +..|.+..+.  ..+.++|++++++++++.-+      -+..+..+|.+|-.. .+++.||.+|+++-+....+ .    
T Consensus        74 at~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA  153 (288)
T KOG1586|consen   74 ATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA  153 (288)
T ss_pred             HHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence            3445444432  33568888888888876433      223455788888766 88999999999998865443 2    


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          182 -EWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       182 -~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                       .-++..|..-...|+|.+|++.|+++....-+|
T Consensus       154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             223345666777899999999999998877777

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.13  E-value=0.24  Score=50.42  Aligned_cols=87  Identities=17%  Similarity=0.074  Sum_probs=71.5

Q ss_pred             CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642          128 GKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRR----G---RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL  197 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~----g---~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~  197 (235)
                      .|++|+..|++..+--|.-   -||...+|...+.+    |   .+++|+..++++-. .|.-|--|..+|.+|..+|+|
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  568 (932)
T PRK13184        490 LYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEY  568 (932)
T ss_pred             HHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhH
Confidence            3899999999999887754   46777788877653    3   47788888888644 356677788999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCH
Q 026642          198 STAKRLFKDILKERPLLL  215 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~~  215 (235)
                      ++-++.|.-+++.+|+++
T Consensus       569 ~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        569 NEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             HHHHHHHHHHHHhcCCCC
Confidence            999999999999999994

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.10  E-value=0.081  Score=41.62  Aligned_cols=64  Identities=25%  Similarity=0.340  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLE-KEPR-NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE  192 (235)
Q Consensus       129 ~~eA~~~~e~aL~-~~P~-~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~  192 (235)
                      ..+.+.+++..++ ..|. .-+..+.|+..+.+.|+|+.++.+++.+++.+|+|.++.-+.-.+.-
T Consensus        51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied  116 (149)
T KOG3364|consen   51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIED  116 (149)
T ss_pred             HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence            4678899999997 4443 45788899999999999999999999999999999999877665543

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.08  E-value=0.36  Score=41.52  Aligned_cols=88  Identities=14%  Similarity=0.129  Sum_probs=69.6

Q ss_pred             CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHc
Q 026642          128 GKSEVEEMFEKLLEKEPRN------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-------EWKLLQALCYELM  194 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-------~a~~~lA~~~~~~  194 (235)
                      ++++|+..|+++.+-...+      -..+...+....+.++|.+|++.|+++.+..-++.       ++.+.-|.|+...
T Consensus       129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~  208 (288)
T KOG1586|consen  129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK  208 (288)
T ss_pred             HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence            4688999999988753322      13455566677788999999999999998776654       3344568899999


Q ss_pred             CCHHHHHHHHHHHHHHCCCCH
Q 026642          195 GKLSTAKRLFKDILKERPLLL  215 (235)
Q Consensus       195 g~~~~A~~~l~kaL~~~P~~~  215 (235)
                      +|.-.+...+++..+++|...
T Consensus       209 ~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  209 ADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             ccHHHHHHHHHHHHhcCCccc
Confidence            999999999999999999883

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.04  E-value=0.66  Score=40.22  Aligned_cols=103  Identities=15%  Similarity=-0.006  Sum_probs=80.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMR----RGRNKEALEFVKRLIDIEPNE-VEWKLLQALCYELMG-  195 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----~g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g-  195 (235)
                      ......+..+|..+|+.+.  +..++.+...||.+|..    ..+..+|..+|+++.+..-.. ..+.+.+|.+|..-+ 
T Consensus        86 g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~  163 (292)
T COG0790          86 GKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQ  163 (292)
T ss_pred             ccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChh
Confidence            3333445788999999544  45788999999999988    789999999999999986433 344888888887752 


Q ss_pred             ------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          196 ------KLSTAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       196 ------~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                            +...|...|.++-...  +..+.+.+|.+|...
T Consensus       164 ~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G  200 (292)
T COG0790         164 ALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG  200 (292)
T ss_pred             hhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence                  2337999999998777  788888888877654

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.94  E-value=0.29  Score=46.90  Aligned_cols=96  Identities=17%  Similarity=0.081  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhhCCCCHHHHHHH------HHHHHHcCCHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVK-RLIDIEPNEVEWKLLQ------ALCYELMGKLSTAK  201 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~-kai~l~P~~~~a~~~l------A~~~~~~g~~~~A~  201 (235)
                      ...+...+..++..||++..+...|+......|....++..+. .+....|++.+....+      +.....+|+.+++.
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  162 (620)
T COG3914          83 STLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAE  162 (620)
T ss_pred             chhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHH
Confidence            3577888889999999999999999999888877666555554 4889999998887777      88899999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHH
Q 026642          202 RLFKDILKERPLLLRALHDLGRY  224 (235)
Q Consensus       202 ~~l~kaL~~~P~~~~a~~~l~~~  224 (235)
                      ...+++....|.+.++..++...
T Consensus       163 ~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         163 LALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHHHhhhhhhhhHhHHHHH
Confidence            99999999999997777666554

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.92  E-value=0.65  Score=40.64  Aligned_cols=98  Identities=14%  Similarity=0.130  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR-GRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS-TAKRLFKD  206 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~-g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~-~A~~~l~k  206 (235)
                      .+.|.+.-+.++..+|.+-.+|...-.++-.. .+..+-+++++++++-+|.+.+.|..+-.+....|++. .-.+..+.
T Consensus        59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~  138 (318)
T KOG0530|consen   59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL  138 (318)
T ss_pred             CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence            37788888889999999998888776665554 46788889999999999999999888888888888887 77888888


Q ss_pred             HHHHCCCCHHHHHHHHHHHh
Q 026642          207 ILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~~  226 (235)
                      ++..|.+|-.+|...--+..
T Consensus       139 ~l~~DaKNYHaWshRqW~~r  158 (318)
T KOG0530|consen  139 MLDDDAKNYHAWSHRQWVLR  158 (318)
T ss_pred             HHhccccchhhhHHHHHHHH
Confidence            99988888777655444433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.90  E-value=0.46  Score=43.32  Aligned_cols=81  Identities=19%  Similarity=0.160  Sum_probs=65.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------C------------CCCH---HHHH
Q 026642          135 MFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI--------------E------------PNEV---EWKL  185 (235)
Q Consensus       135 ~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l--------------~------------P~~~---~a~~  185 (235)
                      .+-..|..+|-.++++..++.++..+|+.+.|.+.+++++-.              +            ++|-   .+.+
T Consensus        28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~  107 (360)
T PF04910_consen   28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALF  107 (360)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHH
Confidence            344556889999999999999999999999999999988632              1            2232   3445


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CH
Q 026642          186 LQALCYELMGKLSTAKRLFKDILKERPL-LL  215 (235)
Q Consensus       186 ~lA~~~~~~g~~~~A~~~l~kaL~~~P~-~~  215 (235)
                      .....+...|-+..|.+..+-++.+||. |+
T Consensus       108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP  138 (360)
T PF04910_consen  108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDP  138 (360)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence            5678899999999999999999999999 64

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.84  E-value=0.67  Score=37.90  Aligned_cols=83  Identities=16%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--C------HH
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPL--L------LR  216 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~--~------~~  216 (235)
                      .++..+|.-|.+.|++++|+++|.++.+.....   .+.++.+.++....|++......++++-..--.  +      ..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            678899999999999999999999988765432   467778888999999999999988887553322  2      45


Q ss_pred             HHHHHHHHHhhchh
Q 026642          217 ALHDLGRYVSMTLQ  230 (235)
Q Consensus       217 a~~~l~~~~~~~~~  230 (235)
                      ++.++..+..+...
T Consensus       117 ~~~gL~~l~~r~f~  130 (177)
T PF10602_consen  117 VYEGLANLAQRDFK  130 (177)
T ss_pred             HHHHHHHHHhchHH
Confidence            66666666665544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.82  E-value=0.49  Score=43.60  Aligned_cols=46  Identities=20%  Similarity=0.230  Sum_probs=31.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKR  172 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~k  172 (235)
                      +..+.|+.+-+.+-+.-|.-+-++.......+..|+|++|++.++.
T Consensus       168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~  213 (531)
T COG3898         168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDA  213 (531)
T ss_pred             ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence            3445566666666677777777777777777778888888777643

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.82  E-value=0.099  Score=44.87  Aligned_cols=62  Identities=13%  Similarity=0.098  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 026642          132 VEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL  193 (235)
Q Consensus       132 A~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~  193 (235)
                      |++.|.+|+...|++...+..+|.++...|+.=+|+-+|-|++-..-..+.+..++..++..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            56778888888888888888888888888888888888888876655557777777777666

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.77  E-value=0.44  Score=44.57  Aligned_cols=70  Identities=11%  Similarity=0.106  Sum_probs=51.8

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          158 MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       158 ~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      +.+|+|.+++-+-.-+.+.+| .+.++..+|.|+++..+|++|-.++.++-. +-+--.+....+++..+++
T Consensus       473 ysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl~lCqKh  542 (549)
T PF07079_consen  473 YSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP-NERMRDSKVQKALALCQKH  542 (549)
T ss_pred             HhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHh
Confidence            347999999999999999999 899999999999999999999998865422 1111333344445544444

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.74  E-value=0.19  Score=45.40  Aligned_cols=75  Identities=16%  Similarity=0.134  Sum_probs=44.3

Q ss_pred             HHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          133 EEMFEKLLEK-EPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       133 ~~~~e~aL~~-~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ...+++++-. +++-   ....-.++-.+...|-|++|++..++++++|+.+..+.-.+|.++...|++.++++.+.+-
T Consensus       157 k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  157 KNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             hhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            3445555544 4443   2223333445566677777777777777777776666666666666666666666666554

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.73  E-value=0.13  Score=30.95  Aligned_cols=34  Identities=15%  Similarity=0.054  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHHCCCC
Q 026642          181 VEWKLLQALCYELMGKLSTAKRL--FKDILKERPLL  214 (235)
Q Consensus       181 ~~a~~~lA~~~~~~g~~~~A~~~--l~kaL~~~P~~  214 (235)
                      ++.+..+|..++.+|++++|++.  |+-+..+++.|
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            35788899999999999999999  55888888764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.58  E-value=0.33  Score=36.73  Aligned_cols=86  Identities=13%  Similarity=0.045  Sum_probs=63.9

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRNVE---ALKVVMQGNMRRG-----------RNKEALEFVKRLIDIEPNEVEWKLLQALC  190 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~~~---a~~~la~~~~~~g-----------~~~eAi~~l~kai~l~P~~~~a~~~lA~~  190 (235)
                      ..++.-+|.++.+..+..+.++..   .+..-|.++.++.           ..-.+++++.+++.+.|+.+...+.+|.=
T Consensus         8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~   87 (111)
T PF04781_consen    8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ   87 (111)
T ss_pred             HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence            345588999999999888777764   4444566664432           23468999999999999998888888887


Q ss_pred             HHHcCCHHHHHHHHHHHHHH
Q 026642          191 YELMGKLSTAKRLFKDILKE  210 (235)
Q Consensus       191 ~~~~g~~~~A~~~l~kaL~~  210 (235)
                      +.....|+++....+++|..
T Consensus        88 l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   88 LGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hhhHHHHHHHHHHHHHHhcc
Confidence            77777788888887777653

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.54  E-value=0.23  Score=48.24  Aligned_cols=92  Identities=18%  Similarity=0.201  Sum_probs=72.4

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 026642          139 LLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID-IEPNE-----VEWKLLQALCYELMGKLSTAKRLFKDILKERP  212 (235)
Q Consensus       139 aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~-l~P~~-----~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P  212 (235)
                      +|.+||++.+-|.....+  ..|+..+-+..|.+|++ .||.-     ...|..+|..|...|+.+.|...|+++++..=
T Consensus       341 lLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y  418 (835)
T KOG2047|consen  341 LLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY  418 (835)
T ss_pred             HHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence            456799999999877655  57888999999999986 56643     36788999999999999999999999998654


Q ss_pred             CC----HHHHHHHHHHHhhchhhc
Q 026642          213 LL----LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       213 ~~----~~a~~~l~~~~~~~~~~~  232 (235)
                      ..    ..+|.+.|.+-.++.+.+
T Consensus       419 ~~v~dLa~vw~~waemElrh~~~~  442 (835)
T KOG2047|consen  419 KTVEDLAEVWCAWAEMELRHENFE  442 (835)
T ss_pred             cchHHHHHHHHHHHHHHHhhhhHH
Confidence            33    677788776655555433

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.11  E-value=0.067  Score=29.44  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 026642          183 WKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       183 a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      +.+.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            44556666666666666665554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.09  E-value=0.96  Score=43.54  Aligned_cols=93  Identities=19%  Similarity=0.154  Sum_probs=74.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG---RNKEALEFVKRLIDIEPNEVEWKLLQALCYELM----GKLSTA  200 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g---~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~----g~~~~A  200 (235)
                      +++.|...|.++.+.  .++++.+.+|.++....   ++..|.++|..|.+.  .+..+.+.+|.||..-    .+.++|
T Consensus       308 d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  308 DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            567899999888776  56788999999988766   678999999999875  4889999999988765    468899


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642          201 KRLFKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      ..+|.++.+..  ++.+.+.++..+.
T Consensus       384 ~~~~k~aA~~g--~~~A~~~~~~~~~  407 (552)
T KOG1550|consen  384 FAYYKKAAEKG--NPSAAYLLGAFYE  407 (552)
T ss_pred             HHHHHHHHHcc--ChhhHHHHHHHHH
Confidence            99999999888  5555555554443

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=94.08  E-value=0.35  Score=38.24  Aligned_cols=54  Identities=22%  Similarity=0.260  Sum_probs=45.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      ...+.....+...+..|++.-|.+..+.++..+|++.+++..++.+|..+|.-.
T Consensus        68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            567888888999999999999999999999999999999999999998877644

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.80  E-value=1.3  Score=40.95  Aligned_cols=93  Identities=11%  Similarity=0.074  Sum_probs=40.9

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCC---HHHHHHHHHHH
Q 026642          134 EMFEKLLEKEPRNVEALKVVMQGNMRRGR--NKEALEFVKRLIDIEPNEVEWKLLQALCYEL-MGK---LSTAKRLFKDI  207 (235)
Q Consensus       134 ~~~e~aL~~~P~~~~a~~~la~~~~~~g~--~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~-~g~---~~~A~~~l~ka  207 (235)
                      ...+.+|+.+|++-.+|.-+..++.+++.  +..=++..+++++.||.+-.+|..+=-++.. ...   ..+-++..+++
T Consensus        96 ~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~  175 (421)
T KOG0529|consen   96 KYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKL  175 (421)
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHH
Confidence            34444455555555555555555544432  3444445555555555444333322222111 111   33344444445


Q ss_pred             HHHCCCCHHHHHHHHHHHh
Q 026642          208 LKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~  226 (235)
                      +..++.|..+|+....+..
T Consensus       176 I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  176 INDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HhccchhhhHHHHHHHHHH
Confidence            5445555555544444443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.77  E-value=1  Score=39.10  Aligned_cols=89  Identities=12%  Similarity=0.024  Sum_probs=63.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHc
Q 026642          126 LMGKSEVEEMFEKLLEKEPRN------VEALKVVMQGNMRRGRNKEALEFVKRLIDIE-----PNEVEWKLLQALCYELM  194 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~-----P~~~~a~~~lA~~~~~~  194 (235)
                      ...+++|...+.++.+-..+|      +.++...+.+.-+..++.|+.++|+++..+.     |+-+-.-..+|-=....
T Consensus        44 Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len  123 (308)
T KOG1585|consen   44 AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN  123 (308)
T ss_pred             hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Confidence            445788888888888654443      3456666777777888999999999998864     34444445556566778


Q ss_pred             CCHHHHHHHHHHHHHHCCCC
Q 026642          195 GKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       195 g~~~~A~~~l~kaL~~~P~~  214 (235)
                      -+.++|+..|++++..--.+
T Consensus       124 v~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  124 VKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             CCHHHHHHHHHHHHHHHhcc
Confidence            88999999999887654433

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.64  E-value=0.44  Score=36.10  Aligned_cols=72  Identities=21%  Similarity=0.271  Sum_probs=58.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHCCCCHHHH
Q 026642          153 VMQGNMRRGRNKEALEFVKRLIDIEPNEVE---WKLLQALCYELMGK-----------LSTAKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       153 la~~~~~~g~~~eAi~~l~kai~l~P~~~~---a~~~lA~~~~~~g~-----------~~~A~~~l~kaL~~~P~~~~a~  218 (235)
                      ++.-+++.|++-+|++..+..+...+++..   .+..-|.+++.++.           .-.+++.|.++..+.|+.+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            567889999999999999999999988764   34445766655543           2368999999999999999888


Q ss_pred             HHHHHH
Q 026642          219 HDLGRY  224 (235)
Q Consensus       219 ~~l~~~  224 (235)
                      +.+|.-
T Consensus        82 ~~la~~   87 (111)
T PF04781_consen   82 FELASQ   87 (111)
T ss_pred             HHHHHH
Confidence            888865

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=93.61  E-value=1.3  Score=40.19  Aligned_cols=89  Identities=20%  Similarity=0.228  Sum_probs=62.3

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------------CCC
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE-----------------------PNE  180 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~-----------------------P~~  180 (235)
                      =.+.+..+-++...++|++||+.+.++..|+.--..  -.-+|++.++++++..                       ..+
T Consensus       195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~--Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtn  272 (556)
T KOG3807|consen  195 WRERNPPARIKAAYQALEINNECATAYVLLAEEEAT--TIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTN  272 (556)
T ss_pred             HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccc
Confidence            334455677888899999999999999988874322  2234444444444321                       112


Q ss_pred             H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          181 V--EWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       181 ~--~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      +  .....+|+|...+|+..+|++.++.+.+..|-.
T Consensus       273 vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~  308 (556)
T KOG3807|consen  273 VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL  308 (556)
T ss_pred             hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH
Confidence            3  334468999999999999999999998888844

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=93.49  E-value=0.15  Score=32.11  Aligned_cols=27  Identities=37%  Similarity=0.559  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642          184 KLLQALCYELMGKLSTAKRLFKDILKE  210 (235)
Q Consensus       184 ~~~lA~~~~~~g~~~~A~~~l~kaL~~  210 (235)
                      .+.+|.+|..+|+++.|.+.+++++..
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            467899999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.25  E-value=0.8  Score=38.38  Aligned_cols=70  Identities=16%  Similarity=0.069  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHhhchhhcc
Q 026642          163 NKEALEFVKRLIDIE-PNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL----LRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       163 ~~eAi~~l~kai~l~-P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~----~~a~~~l~~~~~~~~~~~~  233 (235)
                      -++|...+-++-... =++++..+.+|..| ...|.++|+..|.++|++...+    +..+..|+-++++.++.+.
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence            345555554443221 13566666666644 3677777888887777766544    7777777777777776554

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.24  E-value=0.46  Score=42.16  Aligned_cols=56  Identities=14%  Similarity=0.236  Sum_probs=42.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          152 VVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       152 ~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ..+..|...|.+.+|++..++++.+||-+-..+..+..+|..+||-=.|++.|++.
T Consensus       284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            34555677788888888888888888888888888888888888877777776665

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.21  E-value=1  Score=41.54  Aligned_cols=83  Identities=16%  Similarity=0.137  Sum_probs=62.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNV-EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~-~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      +++++.|.+.|+..+. +|.-- -.+..|-..-.+.|+.+.|..+-+++.+..|.-+.++...-......||++.|+++.
T Consensus       133 eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv  211 (531)
T COG3898         133 EGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV  211 (531)
T ss_pred             cCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence            5667888888887665 33211 123333333456899999999999999999999998888888889999999999998


Q ss_pred             HHHHH
Q 026642          205 KDILK  209 (235)
Q Consensus       205 ~kaL~  209 (235)
                      +...+
T Consensus       212 d~~~~  216 (531)
T COG3898         212 DAQRA  216 (531)
T ss_pred             HHHHH
Confidence            76544

>COG3107 LppC Putative lipoprotein [General function prediction only]

Probab=93.19  E-value=1.8  Score=41.22  Aligned_cols=78  Identities=13%  Similarity=0.111  Sum_probs=47.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH-hhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCC--HHHHHHHHHHHhh
Q 026642          153 VMQGNMRRGRNKEALEFVKRLI-DIEPNE-VEWKLLQALCYELMGKLSTAKRLFKDILK-ERPLL--LRALHDLGRYVSM  227 (235)
Q Consensus       153 la~~~~~~g~~~eAi~~l~kai-~l~P~~-~~a~~~lA~~~~~~g~~~~A~~~l~kaL~-~~P~~--~~a~~~l~~~~~~  227 (235)
                      .+++.++.|+.++|...+.++- .+.+.. .++-...|++.....++..|...+.+... .-|.+  ++.|...+.+...
T Consensus        69 Aa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~a~a~ea  148 (604)
T COG3107          69 AARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQARADALEA  148 (604)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHHHHHHHhc
Confidence            3566677777777777777765 454443 34555667777777777777777766532 22222  5566666666555


Q ss_pred             chh
Q 026642          228 TLQ  230 (235)
Q Consensus       228 ~~~  230 (235)
                      +++
T Consensus       149 ~~~  151 (604)
T COG3107         149 RGD  151 (604)
T ss_pred             ccc
Confidence            544

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.14  E-value=0.16  Score=30.89  Aligned_cols=28  Identities=11%  Similarity=0.204  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026642          149 ALKVVMQGNMRRGRNKEALEFVKRLIDI  176 (235)
Q Consensus       149 a~~~la~~~~~~g~~~eAi~~l~kai~l  176 (235)
                      .+..||.+-+..++|++|++.|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4455555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.10  E-value=0.13  Score=28.31  Aligned_cols=25  Identities=20%  Similarity=0.310  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKR  172 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~k  172 (235)
                      .+...+|.++..+|++++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            4678899999999999999998763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.02  E-value=2.4  Score=36.83  Aligned_cols=104  Identities=12%  Similarity=0.062  Sum_probs=73.6

Q ss_pred             hcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCC--CCHHHHHHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPR------NVEALKVVMQGNMRRGRNKEALEFVKRLID----IEP--NEVEWKLLQALCYE  192 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~------~~~a~~~la~~~~~~g~~~eAi~~l~kai~----l~P--~~~~a~~~lA~~~~  192 (235)
                      +....++|++.|+++++.-.+      -.+.+-..++++.+.++++||-..+.+-..    .+.  ..-.++...-.+|.
T Consensus       122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L  201 (308)
T KOG1585|consen  122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL  201 (308)
T ss_pred             hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence            344579999999998875222      234566778899999999999888776543    232  23344555556777


Q ss_pred             HcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHhhc
Q 026642          193 LMGKLSTAKRLFKDILK----ERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       193 ~~g~~~~A~~~l~kaL~----~~P~~~~a~~~l~~~~~~~  228 (235)
                      ...||..|.++++...+    ..+++.+++.+|...|...
T Consensus       202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~g  241 (308)
T KOG1585|consen  202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEG  241 (308)
T ss_pred             hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccC
Confidence            77899999999998765    3455588888887777543

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.99  E-value=0.48  Score=40.55  Aligned_cols=62  Identities=16%  Similarity=0.080  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          166 ALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       166 Ai~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      |+.+|.+|+.+.|++...++.+|.++...|+.-.|+-+|-+++...--+..+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999887655558889999988887

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=92.85  E-value=1  Score=38.48  Aligned_cols=75  Identities=9%  Similarity=0.044  Sum_probs=67.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHhhch
Q 026642          155 QGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRALHDLGRYVSMTL  229 (235)
Q Consensus       155 ~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~~l~~~~~~~~  229 (235)
                      ..+++.+..++|+...+.-++.+|.+...+..+-.+|.-.|+|++|...++-+-.++|++   +..|.++..+...+.
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~   86 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARN   86 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999   677788877766554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.80  E-value=0.62  Score=41.01  Aligned_cols=55  Identities=24%  Similarity=0.272  Sum_probs=48.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI  176 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l  176 (235)
                      ..-..+..+.+++.+++.++.+|.+-.+|..+...|.+.|+...|+..|+++-+.
T Consensus       162 ~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         162 ALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3333445688899999999999999999999999999999999999999998775

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.71  E-value=1.7  Score=40.09  Aligned_cols=65  Identities=18%  Similarity=0.172  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642          162 RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK--LSTAKRLFKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       162 ~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~--~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      -.++-+.+.+.+++.+|+...+|+.+..++...+.  +..-.+..+++++.||.|..+|...=.++.
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~  156 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVE  156 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence            56788999999999999999999999999998865  588999999999999999777754444433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=92.64  E-value=2.6  Score=41.17  Aligned_cols=117  Identities=14%  Similarity=0.169  Sum_probs=86.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPR----NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN---------------  179 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~----~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~---------------  179 (235)
                      +..-....++.+.|...|+++++-+=.    -+..|...|..-++..+++.|.+.++++.-.--.               
T Consensus       393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r  472 (835)
T KOG2047|consen  393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR  472 (835)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence            444444556788999999999886422    3568888888888899999999999888764211               


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcccC
Q 026642          180 ---EVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQSLF  235 (235)
Q Consensus       180 ---~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~~f  235 (235)
                         ....|..++......|-++.-+..|++++.+.--.+....|.|+.+....-.++.|
T Consensus       473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesF  531 (835)
T KOG2047|consen  473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESF  531 (835)
T ss_pred             HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHH
Confidence               23456667888888888888999999999888777888888888877665544443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=92.47  E-value=1.5  Score=31.20  Aligned_cols=51  Identities=8%  Similarity=-0.018  Sum_probs=31.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH---HHHHHHHcCCHHHHHHHH
Q 026642          154 MQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLL---QALCYELMGKLSTAKRLF  204 (235)
Q Consensus       154 a~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~---lA~~~~~~g~~~~A~~~l  204 (235)
                      |.-++.+++.++|+..++++++..++..+-+..   ++.+|...|+|.++++..
T Consensus        13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen   13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333446667777777777777776665544433   345667777776665554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.20  E-value=4.2  Score=35.43  Aligned_cols=92  Identities=14%  Similarity=0.077  Sum_probs=52.4

Q ss_pred             CCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcC-CHHHHHHHHHHHHhh----CC---CC-------HHH
Q 026642          127 MGKSEVEEMFEKLLEKE-PRNV-------EALKVVMQGNMRRG-RNKEALEFVKRLIDI----EP---NE-------VEW  183 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~-P~~~-------~a~~~la~~~~~~g-~~~eAi~~l~kai~l----~P---~~-------~~a  183 (235)
                      ++.+.|+.++.++-... .-++       +.++..|......+ ++++|+.+++++.++    ..   ..       ...
T Consensus         7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i   86 (278)
T PF08631_consen    7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI   86 (278)
T ss_pred             CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Confidence            34566666666654432 2222       33444555556677 888888888888776    21   11       123


Q ss_pred             HHHHHHHHHHcCCHH---HHHHHHHHHHHHCCCCHHHH
Q 026642          184 KLLQALCYELMGKLS---TAKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       184 ~~~lA~~~~~~g~~~---~A~~~l~kaL~~~P~~~~a~  218 (235)
                      ...++.+|...+.++   +|...++.+-...|+.+..+
T Consensus        87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   87 LRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence            344677777766654   45555556666667665555

It is also involved in sporulation [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.16  E-value=0.29  Score=29.79  Aligned_cols=30  Identities=10%  Similarity=-0.084  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          182 EWKLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                      +.+..+|.+-...++|++|+..|+++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.99  E-value=2.2  Score=41.67  Aligned_cols=80  Identities=10%  Similarity=0.060  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNV------EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR  202 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~------~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~  202 (235)
                      |..++++|+.-+..-|.|.      .....++.+|....+.|.|.+++++|-+.||.++--....-.+....|.-++|..
T Consensus       370 Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~  449 (872)
T KOG4814|consen  370 YVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALT  449 (872)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHH
Confidence            4445555555554433332      2334444455555555555555555555555555555554445555555555555


Q ss_pred             HHHHHH
Q 026642          203 LFKDIL  208 (235)
Q Consensus       203 ~l~kaL  208 (235)
                      ...++.
T Consensus       450 ~~~~~~  455 (872)
T KOG4814|consen  450 CLQKIK  455 (872)
T ss_pred             HHHHHH
Confidence            554443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=91.63  E-value=1.5  Score=41.31  Aligned_cols=93  Identities=15%  Similarity=0.012  Sum_probs=74.1

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          135 MFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       135 ~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      .+++-++.||+|+-.|+.|..-+-.+|.+++-.+.|++...-.|-.+.+|...-.--....||..-...|-++|...-+ 
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-  108 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-  108 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence            5667788999999999999999999999999999999999999999888887666666678888888888888875533 


Q ss_pred             HHHHHHHHHHHhhch
Q 026642          215 LRALHDLGRYVSMTL  229 (235)
Q Consensus       215 ~~a~~~l~~~~~~~~  229 (235)
                      . -+..+-+.|.++.
T Consensus       109 l-dLW~lYl~YIRr~  122 (660)
T COG5107         109 L-DLWMLYLEYIRRV  122 (660)
T ss_pred             H-hHHHHHHHHHHhh
Confidence            2 2334444454443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.44  E-value=2.3  Score=40.42  Aligned_cols=96  Identities=8%  Similarity=-0.101  Sum_probs=72.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      ..++.-+.++...|-+.+..+|...|.+++.-...+.+....|+|++|+..+..+-..-..-..+...+-+-+..+|+++
T Consensus       295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~  374 (831)
T PRK15180        295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR  374 (831)
T ss_pred             HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence            34455556778888888999999999999999999999999999999988876655544444455555566677777787


Q ss_pred             HHHHHHHHHHHHCCCC
Q 026642          199 TAKRLFKDILKERPLL  214 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~  214 (235)
                      +|....+-.|..+-.+
T Consensus       375 ~a~s~a~~~l~~eie~  390 (831)
T PRK15180        375 EALSTAEMMLSNEIED  390 (831)
T ss_pred             HHHHHHHHHhccccCC
Confidence            7777777766655444

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.19  E-value=1.2  Score=31.64  Aligned_cols=51  Identities=22%  Similarity=0.333  Sum_probs=41.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHhh
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQ---GNMRRGRNKEALEFVKRLIDI  176 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~---~~~~~g~~~eAi~~l~kai~l  176 (235)
                      ..+.++|+..++++|+..++..+.+..||.   +|...|+|++++++..+-+++
T Consensus        19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334689999999999999998888887776   467899999999887666654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.07  E-value=1.6  Score=36.91  Aligned_cols=61  Identities=21%  Similarity=0.154  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPR------NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-EWKLLQAL  189 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~------~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-~a~~~lA~  189 (235)
                      +.+|.+.|+++.+.+..      .....+.+|.++.+.|++++|++++.+++...-... .....+|+
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            47899999999986533      356788899999999999999999999998654333 34445554

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.94  E-value=1.1  Score=32.55  Aligned_cols=53  Identities=19%  Similarity=0.184  Sum_probs=39.8

Q ss_pred             cCCHHHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 026642          126 LMGKSEVEEMFEKLLEK----EPRN-----VEALKVVMQGNMRRGRNKEALEFVKRLIDIEP  178 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~----~P~~-----~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P  178 (235)
                      .+++.+|.+.+.+....    +...     ..++..++.++...|++++|++.+++++++-.
T Consensus        11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            45577776666665543    2222     46788899999999999999999999998653

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.77  E-value=0.48  Score=43.81  Aligned_cols=59  Identities=19%  Similarity=0.302  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642          150 LKVVMQGNMRRGRNKEALEFVKRLIDIE---------PNEVEWKLLQALCYELMGKLSTAKRLFKDILK  209 (235)
Q Consensus       150 ~~~la~~~~~~g~~~eAi~~l~kai~l~---------P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~  209 (235)
                      ...|.+++.-.|+|..|++.++-+ +++         +-....++..|-+|..+++|.+|++.|..+|-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888899999999998763 222         22467788999999999999999999998864

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.64  E-value=1.3  Score=36.21  Aligned_cols=88  Identities=13%  Similarity=0.143  Sum_probs=66.8

Q ss_pred             hcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHH----HHHHHHHHHHHcC
Q 026642          125 ALMGKSEVEEMFEKLLEKEP---RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN--EVE----WKLLQALCYELMG  195 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P---~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~--~~~----a~~~lA~~~~~~g  195 (235)
                      ..++.++|.+.|.++.+..-   .-.+.+..+.++.+..|+|..+..+++++-.+-..  +.+    .....|..+...|
T Consensus        48 ~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r  127 (177)
T PF10602_consen   48 KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQR  127 (177)
T ss_pred             HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhc
Confidence            34558999999999877532   34578889999999999999999999998876433  222    2334578888899


Q ss_pred             CHHHHHHHHHHHHHHCC
Q 026642          196 KLSTAKRLFKDILKERP  212 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~P  212 (235)
                      +|.+|.+.|-.++.-..
T Consensus       128 ~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  128 DFKEAAELFLDSLSTFT  144 (177)
T ss_pred             hHHHHHHHHHccCcCCC
Confidence            99999999987765543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.61  E-value=5.8  Score=29.71  Aligned_cols=37  Identities=8%  Similarity=-0.060  Sum_probs=23.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE  182 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~  182 (235)
                      -+-++..||.+|...|+-|.|.+.++.--.+.|+...
T Consensus        71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~  107 (121)
T COG4259          71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV  107 (121)
T ss_pred             CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence            3455666666666777766776666666666666543

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=90.49  E-value=1.1  Score=36.79  Aligned_cols=51  Identities=20%  Similarity=0.253  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          163 NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       163 ~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      .+..++..++.++..|+ +..+..++.++...|+.++|.+.++++....|.+
T Consensus       127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence            34566777888888874 8888889999999999999999999999999943

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.47  E-value=2.6  Score=36.94  Aligned_cols=90  Identities=14%  Similarity=0.131  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNK-EALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~-eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ..+-.+.+.++++.+|+|-..|.-.-.+.-..|+.. .-++..++++..|..+..+|..+--+...-++|+.-.++..++
T Consensus        94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L  173 (318)
T KOG0530|consen   94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL  173 (318)
T ss_pred             HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            456678888888899999999988888887888777 7788888888888888888888888888888888888888888


Q ss_pred             HHHCCCCHHHH
Q 026642          208 LKERPLLLRAL  218 (235)
Q Consensus       208 L~~~P~~~~a~  218 (235)
                      |+.|-.|-.||
T Consensus       174 le~Di~NNSAW  184 (318)
T KOG0530|consen  174 LEEDIRNNSAW  184 (318)
T ss_pred             HHHhhhccchh
Confidence            87776665554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.47  E-value=2.2  Score=42.96  Aligned_cols=86  Identities=22%  Similarity=0.160  Sum_probs=62.3

Q ss_pred             HHHhcCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Q 026642          122 KRDALMGKSEVEEMFEKL----------LEKEPR----------NVEALKVVMQGNMRRGRNKEALEFVKRLIDI-----  176 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~a----------L~~~P~----------~~~a~~~la~~~~~~g~~~eAi~~l~kai~l-----  176 (235)
                      ......+.+.|++.|+++          |..+|.          |...|.-.|....-.|+.|.|+.+|..+-+.     
T Consensus       867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~Vr  946 (1416)
T KOG3617|consen  867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVR  946 (1416)
T ss_pred             HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhhee
Confidence            334444556677766642          344554          4455666677777799999999999877543     


Q ss_pred             ----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          177 ----------------EPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       177 ----------------~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                                      +..|.-+-+.+|+.|...|++.+|+..|.++
T Consensus       947 I~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  947 IKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             eEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                            3446778889999999999999999999876

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=90.45  E-value=0.51  Score=42.31  Aligned_cols=71  Identities=10%  Similarity=0.025  Sum_probs=58.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 026642          117 ENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKV-VMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQ  187 (235)
Q Consensus       117 ~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~-la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~l  187 (235)
                      ..+..-......+.+--..|.+++..+|.|++.|.. -+.-+...++.+.+...+.++++.+|+.+..|+..
T Consensus       111 ~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey  182 (435)
T COG5191         111 SQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY  182 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence            334443333345677788999999999999999998 67778899999999999999999999999888764

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=90.20  E-value=4.1  Score=31.60  Aligned_cols=84  Identities=8%  Similarity=0.048  Sum_probs=55.6

Q ss_pred             HHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q 026642          149 ALKVV--MQGNMRRGRNKEALEFVKRLIDIEPN------------EVEWKLLQALCYELMGKLSTAKRLFKDILK-----  209 (235)
Q Consensus       149 a~~~l--a~~~~~~g~~~eAi~~l~kai~l~P~------------~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~-----  209 (235)
                      +|..|  |.-.++.|-|++|..-+.++++..-.            +.-.+..|+.++..+|+|+++....+++|.     
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR   88 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR   88 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence            44444  34456789999999999999986422            334556688899999999988877777765     


Q ss_pred             --HCCCC----HHHHHHHHHHHhhchhhc
Q 026642          210 --ERPLL----LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       210 --~~P~~----~~a~~~l~~~~~~~~~~~  232 (235)
                        ++-+.    +.+.++.+..+...+...
T Consensus        89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~  117 (144)
T PF12968_consen   89 GELHQDEGKLWIAAVFSRAVALEGLGRKE  117 (144)
T ss_dssp             --TTSTHHHHHHHHHHHHHHHHHHTT-HH
T ss_pred             cccccccchhHHHHHHHHHHHHHhcCChH
Confidence              34333    555566776666655543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=89.65  E-value=8.4  Score=37.17  Aligned_cols=106  Identities=21%  Similarity=0.085  Sum_probs=87.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE-PNEVEWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~-P~~~~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      .+.++...-.|++++..=..-.+.|...+.-....|+-+-|...+.++.+.. |..+..++.-|..-...|+++.|+..|
T Consensus       310 ~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~l  389 (577)
T KOG1258|consen  310 LGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVIL  389 (577)
T ss_pred             cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHH
Confidence            4456777888888887767778999999999999999999999999998865 566888888999999999999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          205 KDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      +++.+..|+.+.+-...+-+..+++..
T Consensus       390 q~i~~e~pg~v~~~l~~~~~e~r~~~~  416 (577)
T KOG1258|consen  390 QRIESEYPGLVEVVLRKINWERRKGNL  416 (577)
T ss_pred             HHHHhhCCchhhhHHHHHhHHHHhcch
Confidence            999999999976665555555555443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=89.55  E-value=3.6  Score=39.07  Aligned_cols=70  Identities=14%  Similarity=0.103  Sum_probs=56.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHH
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR-NKEALEFVKRLIDIEPNEVEWKLLQ  187 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~-~~eAi~~l~kai~l~P~~~~a~~~l  187 (235)
                      .+..-......+.+--..|.++|..+|++++.|...|.-.+.-+. .+.|-..+.++++.+|+.+..|...
T Consensus       110 ~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey  180 (568)
T KOG2396|consen  110 SYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY  180 (568)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence            333333333346777889999999999999999999887777665 9999999999999999999877653

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.50  E-value=3  Score=37.11  Aligned_cols=51  Identities=22%  Similarity=0.038  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          183 WKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      .....+..|...|.+.+|+.+.++++.++|-+...+.++..++...+|..+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is  331 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEIS  331 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchh
Confidence            344567889999999999999999999999999999999999999888543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=89.48  E-value=2.5  Score=40.71  Aligned_cols=95  Identities=15%  Similarity=-0.068  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 026642          132 VEEMFEKLLEKEPRNVEALKVV--MQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD-IL  208 (235)
Q Consensus       132 A~~~~e~aL~~~P~~~~a~~~l--a~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k-aL  208 (235)
                      ++..+..-+..++.+++.+...  ...+...+....+......++..||++..+..++|.+....|....+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444444455788888875444  67777788999999999999999999999999999998888887777766655 88


Q ss_pred             HHCCCCHHHHHHHHHHHh
Q 026642          209 KERPLLLRALHDLGRYVS  226 (235)
Q Consensus       209 ~~~P~~~~a~~~l~~~~~  226 (235)
                      ...|++..++..+.+.|+
T Consensus       130 ~~~~~~~~~~~~~~~~~~  147 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQ  147 (620)
T ss_pred             hcCcchHHHHhhHHHHHH
Confidence            999999887777755554

>PF12854 PPR_1: PPR repeat

Probab=89.28  E-value=0.92  Score=26.49  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=22.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKR  172 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~k  172 (235)
                      |...|..+...|.+.|+.++|++.+++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            466788888888888988888888875

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=89.27  E-value=1.3  Score=24.47  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHH
Q 026642          164 KEALEFVKRLIDIEPNEVEWKL  185 (235)
Q Consensus       164 ~eAi~~l~kai~l~P~~~~a~~  185 (235)
                      +.|...|+++++..|.++..|.
T Consensus         4 ~~~r~i~e~~l~~~~~~~~~W~   25 (33)
T smart00386        4 ERARKIYERALEKFPKSVELWL   25 (33)
T ss_pred             HHHHHHHHHHHHHCCCChHHHH
Confidence            3333444444444443333333

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.24  E-value=4.7  Score=38.27  Aligned_cols=83  Identities=18%  Similarity=0.157  Sum_probs=61.5

Q ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKE-PRNVEA--LKVVMQGNMRRGRNKEALEFVKRLIDIEPN----------EVEWKLLQALCYE  192 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~-P~~~~a--~~~la~~~~~~g~~~eAi~~l~kai~l~P~----------~~~a~~~lA~~~~  192 (235)
                      .+.+++|+..|..+++.. ..|..+  -.++|..|++.|+-+.-.+.++.   +.|.          ....++..|...+
T Consensus       380 v~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf  456 (629)
T KOG2300|consen  380 VNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAF  456 (629)
T ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence            345699999999998863 334443  45678999998876655555554   4444          2356677888889


Q ss_pred             HcCCHHHHHHHHHHHHHHC
Q 026642          193 LMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       193 ~~g~~~~A~~~l~kaL~~~  211 (235)
                      .++++.||+..+++.|+..
T Consensus       457 ~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  457 KQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HhccHHHHHHHHHHHHhhc
Confidence            9999999999999999877

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=89.16  E-value=1.4  Score=24.28  Aligned_cols=31  Identities=13%  Similarity=0.381  Sum_probs=26.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 026642          195 GKLSTAKRLFKDILKERPLLLRALHDLGRYV  225 (235)
Q Consensus       195 g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~  225 (235)
                      |+.+.|...|++++...|.+...|...+...
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e   31 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFE   31 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            6789999999999999999999988776543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=88.97  E-value=2.2  Score=34.90  Aligned_cols=50  Identities=20%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE  180 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~  180 (235)
                      +..++..++.++..| ++..+..++.++..+|+.++|.+..+++..+.|.+
T Consensus       128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence            556778888888888 68999999999999999999999999999999943

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=88.77  E-value=0.33  Score=43.84  Aligned_cols=78  Identities=10%  Similarity=0.028  Sum_probs=67.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          151 KVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       151 ~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ..++..-++.+.+..|+..-..+++.+++...+++.+++.+....++++|.+.++.+....|++......+..+..+.
T Consensus       279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~  356 (372)
T KOG0546|consen  279 RNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK  356 (372)
T ss_pred             cchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence            346667778899999999999999999999999999999999999999999999999999999977666665554443

>PF13041 PPR_2: PPR repeat family

Probab=88.72  E-value=1.2  Score=28.04  Aligned_cols=32  Identities=22%  Similarity=0.400  Sum_probs=25.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIE  177 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~  177 (235)
                      |...|..+...+.+.|++++|++.|++..+..
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g   33 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG   33 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence            45678888888888888888888888888753

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=88.64  E-value=5.7  Score=36.21  Aligned_cols=102  Identities=16%  Similarity=0.134  Sum_probs=77.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC-C----CHHHHHHHHHHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPR-NVEALKVVMQ-GNMRRGRNKEALEFVKRLIDIEP-N----EVEWKLLQALCY  191 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~-~~~a~~~la~-~~~~~g~~~eAi~~l~kai~l~P-~----~~~a~~~lA~~~  191 (235)
                      +.+.....+.+..|.+..+-.+..||. |+-+-..... ..++.++|+--++.++....... +    -|..-+..|.++
T Consensus       109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~  188 (360)
T PF04910_consen  109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY  188 (360)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence            555666677789999999999999999 8875555444 45678889888888887666311 1    245667788899


Q ss_pred             HHcCCH---------------HHHHHHHHHHHHHCCCCHHHHHH
Q 026642          192 ELMGKL---------------STAKRLFKDILKERPLLLRALHD  220 (235)
Q Consensus       192 ~~~g~~---------------~~A~~~l~kaL~~~P~~~~a~~~  220 (235)
                      ...++-               ++|.+.+.+++...|.-...+..
T Consensus       189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~  232 (360)
T PF04910_consen  189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD  232 (360)
T ss_pred             HHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence            999988               89999999999999986554443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.23  E-value=4.2  Score=35.74  Aligned_cols=67  Identities=19%  Similarity=0.132  Sum_probs=59.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642          143 EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP----NEVEWKLLQALCYELMGKLSTAKRLFKDILK  209 (235)
Q Consensus       143 ~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P----~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~  209 (235)
                      .......|..++.+.-+.|+++.|...+.++...++    ..+.+.+..+.++...|+.++|+..++..++
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456677899999999999999999999999998663    2578888999999999999999999999988

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.65  E-value=3.4  Score=40.42  Aligned_cols=66  Identities=11%  Similarity=0.116  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Q 026642          150 LKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLL  215 (235)
Q Consensus       150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~  215 (235)
                      +.+-|.-.++..+|..++++|..-++.-|.|      ......++.||..+.+.|+|+++++++-+.+|.++
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~  428 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP  428 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence            3344666788999999999999999877654      34455688999999999999999999999999884

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.20  E-value=1.6  Score=41.03  Aligned_cols=61  Identities=21%  Similarity=0.147  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          143 EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       143 ~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                      .-++..-|..||...+++|+++-|+++|+++-+.        ..+..+|...|+.++-.+..+.+.+..
T Consensus       343 ~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  343 ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDF--------SGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------HHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------cccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            4468889999999999999999999999986332        245555666666655555555544433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.06  E-value=2.8  Score=39.80  Aligned_cols=50  Identities=16%  Similarity=0.144  Sum_probs=45.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 026642          145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELM  194 (235)
Q Consensus       145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~  194 (235)
                      +.-+.+++.|..|...|+.-+|.+|+.+++.....+|..|..+|.|-+..
T Consensus       333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999886543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=87.04  E-value=1.7  Score=39.89  Aligned_cols=65  Identities=8%  Similarity=-0.039  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642          149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYELMGKLSTAKRLFKDILKERPL  213 (235)
Q Consensus       149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~  213 (235)
                      +...++..+.-.+.++++++.|+++++...++      -+.+..+|.++....|+++|.-...+++++--.
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s  194 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS  194 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence            33444555555555555555555555543221      133444555555555555555555555555433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=86.77  E-value=1.5  Score=42.04  Aligned_cols=72  Identities=18%  Similarity=0.104  Sum_probs=60.4

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          159 RRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELM---GKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       159 ~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~---g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      ..+....|+..|.+++...|.....+.++|.++...   |+--.|+.....++.++|-...+|+.++.++.....
T Consensus       386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r  460 (758)
T KOG1310|consen  386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR  460 (758)
T ss_pred             hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence            345567899999999999999999999999888775   566678888889999999999999999988776543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.76  E-value=8.1  Score=32.43  Aligned_cols=71  Identities=14%  Similarity=0.118  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 026642          130 SEVEEMFEKLLEK-EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN----EVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       130 ~eA~~~~e~aL~~-~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~----~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      ++|.+.|-++-.. .=++++....||-.|. ..+.+.|+..|-+++++...    ++++...+|.+|+.+|+++.|-
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            5566655543221 2367888888887777 78899999999999998655    4899999999999999999884

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.67  E-value=4  Score=28.69  Aligned_cols=42  Identities=14%  Similarity=0.191  Sum_probs=21.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHc
Q 026642          153 VMQGNMRRGRNKEALEFVKRLID-------IEPNEVEWKLLQALCYELM  194 (235)
Q Consensus       153 la~~~~~~g~~~eAi~~l~kai~-------l~P~~~~a~~~lA~~~~~~  194 (235)
                      .|.-+-+.|++++|+.+|+++++       ..||+..-...+..+..++
T Consensus        12 ~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~   60 (75)
T cd02682          12 NAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYK   60 (75)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            34444456666666655555443       4566555444444444433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.66  E-value=3.8  Score=28.78  Aligned_cols=59  Identities=12%  Similarity=0.089  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHhhchh
Q 026642          164 KEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL--LRALHDLGRYVSMTLQ  230 (235)
Q Consensus       164 ~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~--~~a~~~l~~~~~~~~~  230 (235)
                      +.|..+..+|++.|-.   ..+.-|..+     |.+|++.+.+++...||+  -..+......|..+-+
T Consensus         4 ~~A~~~a~~AVe~D~~---gr~~eAi~~-----Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae   64 (75)
T cd02682           4 EMARKYAINAVKAEKE---GNAEDAITN-----YKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIE   64 (75)
T ss_pred             HHHHHHHHHHHHHHhc---CCHHHHHHH-----HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence            4577777777777633   222333333     667888888888999998  3455666666665543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=86.09  E-value=14  Score=34.95  Aligned_cols=90  Identities=8%  Similarity=0.001  Sum_probs=65.4

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------------CHHHH--HHHHHHHHHcCCHHHHHHHH
Q 026642          140 LEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN-------------EVEWK--LLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       140 L~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~-------------~~~a~--~~lA~~~~~~g~~~~A~~~l  204 (235)
                      -+..|+.+-.....|....++|+|.+|++.+..--+.-.+             ..+.+  ...|.++...|++.++...+
T Consensus        72 ~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iL  151 (549)
T PF07079_consen   72 RQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAIL  151 (549)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            3457888888888899999999999999988766554111             11222  24689999999999999999


Q ss_pred             HHHHHHCC-----CCHHHHHHHHHHHhhch
Q 026642          205 KDILKERP-----LLLRALHDLGRYVSMTL  229 (235)
Q Consensus       205 ~kaL~~~P-----~~~~a~~~l~~~~~~~~  229 (235)
                      ++++..--     =+...|.+.++++.+.+
T Consensus       152 n~i~~~llkrE~~w~~d~yd~~vlmlsrSY  181 (549)
T PF07079_consen  152 NRIIERLLKRECEWNSDMYDRAVLMLSRSY  181 (549)
T ss_pred             HHHHHHHhhhhhcccHHHHHHHHHHHhHHH
Confidence            98876432     24777777777766543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.98  E-value=1.5  Score=27.49  Aligned_cols=26  Identities=15%  Similarity=0.215  Sum_probs=23.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026642          151 KVVMQGNMRRGRNKEALEFVKRLIDI  176 (235)
Q Consensus       151 ~~la~~~~~~g~~~eAi~~l~kai~l  176 (235)
                      ..|+..|++.|+.+.|.+.++++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            56899999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=85.89  E-value=22  Score=34.28  Aligned_cols=93  Identities=11%  Similarity=0.060  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQG-NMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~-~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      ..|..+|.++-+..-.--..+..-|.+ |.-.++.+-|...++--++..++.+.+-.....-+...++-+.|...|++++
T Consensus       383 kaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l  462 (656)
T KOG1914|consen  383 KAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVL  462 (656)
T ss_pred             HHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence            445556666554322222333333332 4457889999999999999999999988888888999999999999999998


Q ss_pred             HH--CCCC-HHHHHHHH
Q 026642          209 KE--RPLL-LRALHDLG  222 (235)
Q Consensus       209 ~~--~P~~-~~a~~~l~  222 (235)
                      ..  .|+- .+.|....
T Consensus       463 ~s~l~~~ks~~Iw~r~l  479 (656)
T KOG1914|consen  463 TSVLSADKSKEIWDRML  479 (656)
T ss_pred             hccCChhhhHHHHHHHH
Confidence            87  5544 34554433

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=85.89  E-value=1.3  Score=24.28  Aligned_cols=26  Identities=23%  Similarity=0.432  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642          150 LKVVMQGNMRRGRNKEALEFVKRLID  175 (235)
Q Consensus       150 ~~~la~~~~~~g~~~eAi~~l~kai~  175 (235)
                      |..+...|.+.|++++|.+.+++..+
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhH
Confidence            45556666666666666666666544

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=85.85  E-value=9.4  Score=33.11  Aligned_cols=67  Identities=19%  Similarity=0.235  Sum_probs=49.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHH----------------HHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 026642          144 PRNVEALKVVMQGNMRRGRNKEALEFV----------------KRLIDIEPNEVEWKLLQALC-YELMGKLSTAKRLFKD  206 (235)
Q Consensus       144 P~~~~a~~~la~~~~~~g~~~eAi~~l----------------~kai~l~P~~~~a~~~lA~~-~~~~g~~~~A~~~l~k  206 (235)
                      -.+++.+..+|..|.+.|++.+|..++                ....+-+|.+.+.+..+|++ |...|+...|.+.++.
T Consensus        87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~  166 (260)
T PF04190_consen   87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT  166 (260)
T ss_dssp             T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            368899999999999999999987774                11223457778888888865 7778999999998888


Q ss_pred             HHHH
Q 026642          207 ILKE  210 (235)
Q Consensus       207 aL~~  210 (235)
                      .++.
T Consensus       167 f~~~  170 (260)
T PF04190_consen  167 FTSK  170 (260)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8777

; PDB: 3LKU_E 2WPV_G.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=85.79  E-value=1.8  Score=42.00  Aligned_cols=97  Identities=14%  Similarity=0.090  Sum_probs=57.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          134 EMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV--EWKLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       134 ~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~--~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                      .....+++.++.+...+..-+...-.+|+.-+|..|+..++-+.|+..  -+++.+|.++..+|...+|--.+..++...
T Consensus       200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence            445556666666655555444444556777777777777776665532  245556666666666666666666666555


Q ss_pred             CCCHHHHHHHHHHHhhchh
Q 026642          212 PLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       212 P~~~~a~~~l~~~~~~~~~  230 (235)
                      |....-++-++.++.++++
T Consensus       280 ~~~t~n~y~l~~i~aml~~  298 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLGE  298 (886)
T ss_pred             ccccccceeHHHHHHHHhh
Confidence            5554445555555554443

>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.53  E-value=9.6  Score=29.97  Aligned_cols=32  Identities=13%  Similarity=0.150  Sum_probs=23.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 026642          151 KVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE  182 (235)
Q Consensus       151 ~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~  182 (235)
                      ..+|..++.+|+++++..++-.||...+.-.+
T Consensus        85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaq  116 (143)
T KOG4056|consen   85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPAQ  116 (143)
T ss_pred             HHhHHHHHHccCHHHHHHHHHHHHhhcCCHHH
Confidence            45677788888888888888888877766444

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=85.30  E-value=6.2  Score=33.81  Aligned_cols=79  Identities=16%  Similarity=0.122  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCH
Q 026642          130 SEVEEMFEKLLEKEP------RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYELMGKL  197 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P------~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~~g~~  197 (235)
                      ...++.++++.+.-.      --......+|..|+..|+|++|++.|+.+....-.+      ......+..|+...|+.
T Consensus       155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~  234 (247)
T PF11817_consen  155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV  234 (247)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence            345666666665422      122455678999999999999999999997654321      24455577888899998


Q ss_pred             HHHHHHHHHHH
Q 026642          198 STAKRLFKDIL  208 (235)
Q Consensus       198 ~~A~~~l~kaL  208 (235)
                      ++.+...-+++
T Consensus       235 ~~~l~~~leLl  245 (247)
T PF11817_consen  235 EDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHh
Confidence            88777665543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=84.82  E-value=11  Score=28.99  Aligned_cols=74  Identities=15%  Similarity=0.161  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------------C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN--------------E--VEWKLLQALCYELMGKLSTAKRLFKDILKE  210 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~--------------~--~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~  210 (235)
                      .+.+..+...+.+.|+.+....++++.-..+.+              .  .+.....+.+|..+|++..|++..+...+.
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~   81 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK   81 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            456667788888899999988888887766533              2  355666778899999999999999999999


Q ss_pred             CCCC--HHHHHH
Q 026642          211 RPLL--LRALHD  220 (235)
Q Consensus       211 ~P~~--~~a~~~  220 (235)
                      +|=.  ..+|..
T Consensus        82 Y~I~i~~~~W~~   93 (126)
T PF12921_consen   82 YPIPIPKEFWRR   93 (126)
T ss_pred             cCCCCCHHHHHH
Confidence            9854  344433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=84.32  E-value=11  Score=36.64  Aligned_cols=75  Identities=15%  Similarity=0.055  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .+.+....+..+-............+..+..-|+.++|..+|++++..+|+  .+++..|+-++..|-...|...++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   98 (578)
T PRK15490         24 LAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK   98 (578)
T ss_pred             HHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence            344444444444444444555555566666666667777777777776666  455556666666666666655554

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=83.94  E-value=2.6  Score=23.37  Aligned_cols=26  Identities=31%  Similarity=0.625  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642          150 LKVVMQGNMRRGRNKEALEFVKRLID  175 (235)
Q Consensus       150 ~~~la~~~~~~g~~~eAi~~l~kai~  175 (235)
                      |..+...|.+.|++++|++.|++..+
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55566677777777777777777654

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=83.90  E-value=4.8  Score=34.50  Aligned_cols=72  Identities=14%  Similarity=0.061  Sum_probs=50.1

Q ss_pred             CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhc
Q 026642          161 GRNKEALEFVKRLIDIEPNE------VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMT  228 (235)
Q Consensus       161 g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~  228 (235)
                      ..-...|+.++++++.....      ......+|.-|+..|+|++|.+.|+.+....-..      ..++..+..++.+.
T Consensus       152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~  231 (247)
T PF11817_consen  152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL  231 (247)
T ss_pred             chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            34456788888888765432      2344568999999999999999999997765543      44555566666655


Q ss_pred             hhhc
Q 026642          229 LQIQ  232 (235)
Q Consensus       229 ~~~~  232 (235)
                      ++.+
T Consensus       232 ~~~~  235 (247)
T PF11817_consen  232 GDVE  235 (247)
T ss_pred             CCHH
Confidence            5543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=83.73  E-value=8.2  Score=37.24  Aligned_cols=86  Identities=19%  Similarity=0.182  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLL-QALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~-lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      .+.+...|...|...|..--.|...|..-.+.|..+.+++.|++.+.--|-..+.|.. ++.+-...|+.+.-.+.|++|
T Consensus        61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A  140 (577)
T KOG1258|consen   61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA  140 (577)
T ss_pred             HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            4667889999999999999999999999999999999999999999999988887775 455666778888888888888


Q ss_pred             HHHCCCC
Q 026642          208 LKERPLL  214 (235)
Q Consensus       208 L~~~P~~  214 (235)
                      ....-.+
T Consensus       141 ~~~vG~d  147 (577)
T KOG1258|consen  141 KSYVGLD  147 (577)
T ss_pred             HHhcccc
Confidence            7766554

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=83.56  E-value=6.1  Score=31.18  Aligned_cols=61  Identities=13%  Similarity=0.031  Sum_probs=46.7

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          172 RLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       172 kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +.+++- ...+.....|+-....|++.-|....+.++..+|+|..+..-.+.++.+.+...+
T Consensus        62 ~~v~l~-GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   62 RYVELA-GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            334442 4577788888999999999999999999999999999999888888887766543

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=83.24  E-value=4.6  Score=37.44  Aligned_cols=67  Identities=10%  Similarity=0.129  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLID--IEP--NEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~--l~P--~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      .....|-+.|+..+.|+.|.+...+..-  .+.  +.+++.+.+|.+-.-+++|..|.+++-.++...|++
T Consensus       210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            3445567778888999999998888762  222  235667789999999999999999999999999986

>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit

Probab=83.09  E-value=22  Score=28.36  Aligned_cols=27  Identities=19%  Similarity=0.132  Sum_probs=14.4

Q ss_pred             HHHHHHHcC-CHHHHHHHHHHHHHHCCC
Q 026642          187 QALCYELMG-KLSTAKRLFKDILKERPL  213 (235)
Q Consensus       187 lA~~~~~~g-~~~~A~~~l~kaL~~~P~  213 (235)
                      +|..+...| +.++|..+|-++|...|+
T Consensus        96 ~GE~L~~~g~~~~ega~hf~nAl~Vc~q  123 (148)
T TIGR00985        96 LGEELMAQGTNVDEGAVHFYNALKVYPQ  123 (148)
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence            455555555 555555555555555554

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.61  E-value=2.8  Score=29.48  Aligned_cols=33  Identities=12%  Similarity=0.394  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI  176 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l  176 (235)
                      .++|+..+.++++.|               ..|+|++|+..|..+++.
T Consensus         3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~   35 (75)
T cd02680           3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL   35 (75)
T ss_pred             HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence            456666666665544               567888888888888774

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=81.93  E-value=20  Score=34.84  Aligned_cols=82  Identities=10%  Similarity=0.057  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhCC----CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC--CCCHH----HHHHHHHHHHHcCCHHH
Q 026642          131 EVEEMFEKLLEKEP----RNVEALKVVMQGNM-RRGRNKEALEFVKRLIDIE--PNEVE----WKLLQALCYELMGKLST  199 (235)
Q Consensus       131 eA~~~~e~aL~~~P----~~~~a~~~la~~~~-~~g~~~eAi~~l~kai~l~--P~~~~----a~~~lA~~~~~~g~~~~  199 (235)
                      .|+.+++.+++..+    .++.+...+|.+++ ...++++|..+++|++.+.  ++..+    ..+.++.+|...+... 
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence            45555555553211    12334555555555 3455666666666665544  22222    2233455555555555 


Q ss_pred             HHHHHHHHHHHCCC
Q 026642          200 AKRLFKDILKERPL  213 (235)
Q Consensus       200 A~~~l~kaL~~~P~  213 (235)
                      |+..+++.++..-+
T Consensus       118 a~~~l~~~I~~~~~  131 (608)
T PF10345_consen  118 ALKNLDKAIEDSET  131 (608)
T ss_pred             HHHHHHHHHHHHhc
Confidence            66666555554433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.92  E-value=3.1  Score=29.30  Aligned_cols=20  Identities=25%  Similarity=0.375  Sum_probs=15.5

Q ss_pred             HHHcCCHHHHHHHHHHHHhh
Q 026642          157 NMRRGRNKEALEFVKRLIDI  176 (235)
Q Consensus       157 ~~~~g~~~eAi~~l~kai~l  176 (235)
                      .-+.|+|++|+.+|.++++.
T Consensus        16 ~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681          16 RDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHccCHHHHHHHHHHHHHH
Confidence            33678888888888888764

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=81.80  E-value=11  Score=36.73  Aligned_cols=79  Identities=16%  Similarity=0.143  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC---C------CHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHHCC
Q 026642          150 LKVVMQGNMRRGRNKEALEFVKRLIDIEP---N------EVEWKLLQALCYELMGKLSTAKRLFK--------DILKERP  212 (235)
Q Consensus       150 ~~~la~~~~~~g~~~eAi~~l~kai~l~P---~------~~~a~~~lA~~~~~~g~~~~A~~~l~--------kaL~~~P  212 (235)
                      +...+...+-.|++..|...++.+.+...   .      .+..++..|..+...|+.+.|+..|.        .+....+
T Consensus       364 ~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~  443 (608)
T PF10345_consen  364 LFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSK  443 (608)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCc
Confidence            34455566778999999999998876532   2      37788999999999999999999997        5555555


Q ss_pred             CC---HHHHHHHHHHHhhc
Q 026642          213 LL---LRALHDLGRYVSMT  228 (235)
Q Consensus       213 ~~---~~a~~~l~~~~~~~  228 (235)
                      .+   +-+..++..++...
T Consensus       444 ~~El~ila~LNl~~I~~~~  462 (608)
T PF10345_consen  444 FRELYILAALNLAIILQYE  462 (608)
T ss_pred             chHHHHHHHHHHHHHhHhh
Confidence            55   34445666665543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=81.58  E-value=18  Score=36.60  Aligned_cols=90  Identities=16%  Similarity=0.103  Sum_probs=67.7

Q ss_pred             hcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPR---------NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-----VEWKLLQALC  190 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~---------~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-----~~a~~~lA~~  190 (235)
                      ....+++|..+..++...-+.         -++.....|.+....|+.++|++..+.++..=|.+     .......|.+
T Consensus       427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a  506 (894)
T COG2909         427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA  506 (894)
T ss_pred             HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence            344577887777776654322         23455666788889999999999999999876654     3456678999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          191 YELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       191 ~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      ..-.|++++|..+...+.+..-.+
T Consensus       507 ~~~~G~~~~Al~~~~~a~~~a~~~  530 (894)
T COG2909         507 AHIRGELTQALALMQQAEQMARQH  530 (894)
T ss_pred             HHHhchHHHHHHHHHHHHHHHHHc
Confidence            999999999999999998874433

>PF13041 PPR_2: PPR repeat family

Probab=81.14  E-value=11  Score=23.46  Aligned_cols=32  Identities=28%  Similarity=0.258  Sum_probs=27.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          180 EVEWKLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       180 ~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                      +...|..+-..|...|++++|.+.|++..+..
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g   33 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG   33 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence            35677888899999999999999999998754

>PRK10722 hypothetical protein; Provisional

Probab=81.06  E-value=35  Score=29.41  Aligned_cols=76  Identities=8%  Similarity=-0.055  Sum_probs=42.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 026642          145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK-LSTAKRLFKDILKERPLLLRALHDLGR  223 (235)
Q Consensus       145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~-~~~A~~~l~kaL~~~P~~~~a~~~l~~  223 (235)
                      +|+-.|.....+.-+.+. .+|-   .++-.+..++...-+..|.++...+- ..++...++++.......+..+.=|+.
T Consensus        73 ~N~LYWlR~mdcAdRL~~-~ear---~ea~~~~~~~w~~afkq~ILL~~a~~t~~err~~l~rl~~~~~~~p~~lrPL~q  148 (247)
T PRK10722         73 NNPLYWLRAMDCADRLMP-AQAR---AQAKRLPDDSWQNAFKQGILLADAKITPAERRQIVERLNAYSLQIPAQVRPLYQ  148 (247)
T ss_pred             cchHHHHHHHHHHHhcCH-HHHH---HHHHhcCCCCHHHHHHHHHHHcCCCCChHHHHHHHHHHhhcccccchhhhHHHH
Confidence            566667766666666655 2332   23333445556666666665544432 566777777776666666544444443


Q ss_pred             H
Q 026642          224 Y  224 (235)
Q Consensus       224 ~  224 (235)
                      +
T Consensus       149 l  149 (247)
T PRK10722        149 L  149 (247)
T ss_pred             H
Confidence            3

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=80.65  E-value=13  Score=28.38  Aligned_cols=80  Identities=10%  Similarity=0.025  Sum_probs=51.1

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHhhCCCCHHHHHHHHHHHHHc
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKR---------LIDIEPNEVEWKLLQALCYELM  194 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~k---------ai~l~P~~~~a~~~lA~~~~~~  194 (235)
                      .+.+.....+..++.++..++.+......++.+|.+.+ .++.++.++.         ++++-.. ...|-....+|...
T Consensus        18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~~~~~yd~~~~~~~c~~-~~l~~~~~~l~~k~   95 (140)
T smart00299       18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDNKSNHYDIEKVGKLCEK-AKLYEEAVELYKKD   95 (140)
T ss_pred             HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHhccccCCHHHHHHHHHH-cCcHHHHHHHHHhh
Confidence            33445788899999999988888899999999998764 3455555552         2221111 11233445566677


Q ss_pred             CCHHHHHHHHH
Q 026642          195 GKLSTAKRLFK  205 (235)
Q Consensus       195 g~~~~A~~~l~  205 (235)
                      |++++|++.+-
T Consensus        96 ~~~~~Al~~~l  106 (140)
T smart00299       96 GNFKDAIVTLI  106 (140)
T ss_pred             cCHHHHHHHHH
Confidence            77777766653

>PRK11619 lytic murein transglycosylase; Provisional

Probab=80.63  E-value=9.3  Score=37.67  Aligned_cols=64  Identities=16%  Similarity=0.266  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK  209 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~  209 (235)
                      +.+.+....++.+..++++.+..++..+-+.......|++-+|+++...|+.++|...|+++..
T Consensus       311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            3444444556667889999888888886554556789999999999999999999999999854

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=80.48  E-value=3.9  Score=27.72  Aligned_cols=18  Identities=39%  Similarity=0.503  Sum_probs=11.9

Q ss_pred             HHcCCHHHHHHHHHHHHh
Q 026642          158 MRRGRNKEALEFVKRLID  175 (235)
Q Consensus       158 ~~~g~~~eAi~~l~kai~  175 (235)
                      -+.|++++|+++|.++++
T Consensus        16 D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen   16 DEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHTTSHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            356777777777766654

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.12  E-value=21  Score=37.14  Aligned_cols=61  Identities=13%  Similarity=0.072  Sum_probs=53.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642          145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKE  210 (235)
Q Consensus       145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~  210 (235)
                      +.++.|..+|...++.|...+|++-|-|+     +++..|...-.+....|.|++-++++.-+-+.
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            67899999999999999999999998775     67888888889999999999999998777553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	235
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		7e-05
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-04
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		5e-04

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE-WKLLQA 188
            E  E ++K LE +P N EA   +     ++G   EA+E+ ++ ++++PN  E W  L  
Sbjct: 26  DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85
Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223
             Y+  G    A   ++  L+  P    A  +LG 
Sbjct: 86  AYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLGN 119

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE-WKLLQA 188
            E  E ++K LE +PR+ EA   +     ++G   EA+E+ ++ ++++P   E W  L  
Sbjct: 18  DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 77
Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222
             Y+  G    A   ++  L+  P    A ++LG
Sbjct: 78  AYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLG 110

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE-WKLLQA 188
            E  E ++K LE  P N EA   +     ++G   EA+E+ ++ +++ PN  E W  L  
Sbjct: 26  DEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGN 85
Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223
             Y+  G    A   ++  L+  P    A  +LG 
Sbjct: 86  AYYK-QGDYDEAIEYYQKALELYPNNAEAKQNLGN 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	9e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-08
 Identities = 44/252 (17%), Positives = 82/252 (32%), Gaps = 80/252 (31%)

Query: 37  HHTLSFQQTQKQK--------FHSLFITNLSQSHIAKIPRSSLSPENKIMKVLKEK---- 84
           HH + F+  + Q         F   F+ N     +  +P+S LS E +I  ++  K    
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVS 62

Query: 85  AVIFLAGSVIFLGS------FGSNLRP---------SVALPGKMRASENLKEKRDALMGK 129
             + L  +++              LR                    +    E+RD L   
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 130 SEV--------EEMFEK----LLEKEPRNVEALKVVMQGNMRRGRNKE--ALEFVK--RL 173
           ++V         + + K    LLE  P    A  V++ G +  G  K   AL+     ++
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRP----AKNVLIDG-V-LGSGKTWVALDVCLSYKV 176

Query: 174 IDIEPNEVEW-------------KLLQALCYELMGKLST--------------AKRLFKD 206
                 ++ W             ++LQ L Y++    ++               +   + 
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 207 ILKERPL---LL 215
           +LK +P    LL
Sbjct: 237 LLKSKPYENCLL 248

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 39/230 (16%), Positives = 68/230 (29%), Gaps = 46/230 (20%)

Query: 16  DRPVLPDPNKSSF-LSSPNKQKHHTLSFQQTQKQKFHSLFITNLSQ--SHIAKIPRSSLS 72
              V    +   F L+  N     T+       QK       N +    H + I     S
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 73  PENKIMKVLKEK----AVIFLAG--SVIFLGSFGSNLR-------PSVA--LPGKMRASE 117
            + ++ ++LK K     ++ L    +     +F  + +         V   L        
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 118 NLKEKRDALMGKSEVEEMFEKLL----EKEPRNVEALKVVMQGNMRRGRNKEALEFVKRL 173
           +L      L    EV+ +  K L    +  PR  E L            N   L  +   
Sbjct: 290 SLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPR--EVLTT----------NPRRLSIIAES 336

Query: 174 IDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL-HDLG 222
           I        W   + +  +   KL+T      ++L+  P   R +   L 
Sbjct: 337 IRDGLA--TWDNWKHVNCD---KLTTIIESSLNVLE--PAEYRKMFDRLS 379

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 6e-08
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 11/103 (10%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGN--MRRGRNKEALEFVKRLIDIEPNEVEWKLLQA 188
             E    +L  +EP N   L   +  +   +  R   +  F    I   P   E      
Sbjct: 17  AAERHCMQLWRQEPDNTGVLL--LLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74

Query: 189 LCYELMGKLSTAKRLFKDILKERP-------LLLRALHDLGRY 224
             Y+  G+L  A   ++  L+ +P        L  AL   G  
Sbjct: 75  NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 11/103 (10%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGN--MRRGRNKEALEFVKRLIDIEPNEVEWKLLQA 188
           E  E +   L  +P  ++    +      +  G  + A++     +   P+    +    
Sbjct: 85  EAIEHYRHALRLKPDFIDGY--INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142

Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRA-------LHDLGRY 224
              + +G+L  AK  +   ++ +P    A        +  G  
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 159 RRGRNKEALEFVKRLIDIEPNEVE-WKLLQALCYELMGKLSTAKRLFKDILKERPLLLRA 217
           + G  + A     +L   EP+      LL +  +    +L  +       +K+ PLL  A
Sbjct: 11  QAGDFEAAERHCMQLWRQEPDNTGVLLLL-SSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69

Query: 218 LHDLG 222
             +LG
Sbjct: 70  YSNLG 74

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 4/95 (4%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGN--MRRGRNKEALEFVKRLIDIEPNEVEWKLLQA 188
                    +   P++  A   +M  +  +  G        V+R + + P   E      
Sbjct: 7   RELLQLRAAVRHRPQDFVAW--LMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223
                  + + A  L +      P        LG 
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH 99

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 16/92 (17%), Positives = 31/92 (33%)

Query: 133 EEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE 192
           E   ++ L   P + EA+  + +    + R+ EA   +++  D  P      L      E
Sbjct: 43  EMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE 102

Query: 193 LMGKLSTAKRLFKDILKERPLLLRALHDLGRY 224
             G+   A   +    +  P        L  +
Sbjct: 103 DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNW 134

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 16/116 (13%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGN----------------MRRGRNKEALEFVKRLI 174
           +    F + +       E                          +     +A  F K L+
Sbjct: 22  QAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81

Query: 175 DIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQ 230
              PN V+     A      G+   A R+++ IL+     L A   LG Y  +T +
Sbjct: 82  QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 12/98 (12%)

Query: 118 NLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNM---RRGRNKEALEFVKRLI 174
              +++DAL        M+EK+L+ E  N+ A   +  GN       + K+ LE   + +
Sbjct: 100 CRGQEKDAL-------RMYEKILQLEADNLAAN--IFLGNYYYLTAEQEKKKLETDYKKL 150

Query: 175 DIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP 212
                    +    L      +   A+   + ++   P
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 22/114 (19%)

Query: 133 EEMFEKLLEKEPRNVEALKVVMQ---------------GNMRRGRNKEALEFVKRLIDIE 177
           E+ F+K+L+  P   E  +   Q                         A+ F+ +++++ 
Sbjct: 91  EDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150

Query: 178 PNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP-----LLLR--ALHDLGRY 224
             + E + L+A C+   G+   A    K   K +              + LG +
Sbjct: 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH 204

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 14/128 (10%)

Query: 111 GKMRASENLKEKRDALMGKSEVEE---MFEKLLEKEPRNVEALKVVMQG----NMRRGRN 163
            +++    L E  + L+      +    +E +++ EP   E      +       +  + 
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288

Query: 164 KEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP-------LLLR 216
            EA+     ++ +EP+ V     +A  Y +      A + ++   +           L +
Sbjct: 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348

Query: 217 ALHDLGRY 224
           A   L + 
Sbjct: 349 AQRLLKQS 356

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 134 EMFEKLLEKEPRNVEALKVVMQGN-----MRRGRNKEALEFVKRLIDIEPNEVEWKLLQA 188
             F   ++ +P N  A             +  G++K AL  + ++I ++ +    +L + 
Sbjct: 24  SQFHAAVDGDPDNYIAY-----YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG 78

Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRY 224
                 GKL  A+  FK +LK  P          + 
Sbjct: 79  HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGN--MRRGRNKEALEFVKRLIDIEPNEVEWKLLQ 187
           +      +K+LE    + E     ++    ++ G  ++A+  +K    ++ +  E     
Sbjct: 137 TAAITFLDKILEVCVWDAELR--ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194

Query: 188 ALCYELMGKLSTAKRLFKDILKERP 212
           +  Y  +G    +    ++ LK   
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQ 219

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 46.3 bits (110), Expect = 8e-07
 Identities = 12/82 (14%), Positives = 28/82 (34%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC 190
           E E  F  L   +  NV+ +  +      + + ++A +       +  N+         C
Sbjct: 54  EAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113

Query: 191 YELMGKLSTAKRLFKDILKERP 212
              +     AK  F+ +++   
Sbjct: 114 QLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 13/107 (12%), Positives = 34/107 (31%)

Query: 117 ENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI 176
              +    A++         + +       ++ +         +GR +EA  F + L   
Sbjct: 6   TENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY 65

Query: 177 EPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223
           +   V++ +  A  Y++  +   A  L+             +   G+
Sbjct: 66  DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 2/122 (1%)

Query: 101 SNLRPSVALPGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR 160
             + P +     +    +    +      +   ++  K  E +PR+ +A   + Q  ++ 
Sbjct: 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475

Query: 161 GRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHD 220
            +  EA+E  +    +     E   LQA  +    K+    R    I  +  L L     
Sbjct: 476 EKIDEAIELFEDSAILARTMDE--KLQATTFAEAAKIQKRLRADPIISAKMELTLARYRA 533

Query: 221 LG 222
            G
Sbjct: 534 KG 535

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 13/104 (12%)

Query: 133 EEMFEKLLEKEPRNVEALKVVM--QGN--MRRGRNKEALEFVKRLIDIEPNEVE-WKLLQ 187
           E    +L    P   +A  V +  +GN         EA+++ +  I+++PNE   +  + 
Sbjct: 7   EPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI- 65

Query: 188 ALCYELMGKLSTAKRLFKDILKERP-------LLLRALHDLGRY 224
           + CY   G L          L+ +P           A   LG +
Sbjct: 66  SACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 16/133 (12%), Positives = 32/133 (24%), Gaps = 16/133 (12%)

Query: 108 ALPGKMRASENLKEKRDALMGKS--------EVEEMFEKLLEKEPRNVEALKVVMQGNMR 159
            LP     +         L   S            +    L++     +   +V    + 
Sbjct: 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT 219

Query: 160 R--GRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP----L 213
           +        L        +  N         + + L   L  A+ L ++ +   P     
Sbjct: 220 KSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSY 279

Query: 214 LLRA--LHDLGRY 224
           +  A  L D    
Sbjct: 280 IFLALTLADKENS 292

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.1 bits (111), Expect = 2e-06
 Identities = 17/92 (18%), Positives = 33/92 (35%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC 190
           E    +++ +   P   +A   +          + AL+   R I I P   +     A  
Sbjct: 61  EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120

Query: 191 YELMGKLSTAKRLFKDILKERPLLLRALHDLG 222
           ++  G +  A   ++  LK +P    A  +L 
Sbjct: 121 HKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGN--MRRGRNKEALEFVKRLIDIEPNEVEWKLLQA 188
           E   ++ K LE  P    A       +   ++G+ +EAL   K  I I P   +      
Sbjct: 27  EAVRLYRKALEVFPEFAAA--HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84

Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222
              + M  +  A + +   ++  P    A  +L 
Sbjct: 85  NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 144 PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL 203
           P + ++L  +      +G  +EA+   ++ +++ P         A   +  GKL  A   
Sbjct: 6   PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65

Query: 204 FKDILKERP-------LLLRALHDLGRY 224
           +K+ ++  P        +   L ++   
Sbjct: 66  YKEAIRISPTFADAYSNMGNTLKEMQDV 93

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 11/96 (11%), Positives = 33/96 (34%), Gaps = 1/96 (1%)

Query: 127 MGKSEV-EEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKL 185
           M   +   + + + ++  P   +A   +   +   G   EA+   +  + ++P+  +   
Sbjct: 90  MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149

Query: 186 LQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL 221
             A C +++   +      K ++      L      
Sbjct: 150 NLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLP 185

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 22/114 (19%)

Query: 133 EEMFEKLLEKEPRNVEA-------------LKVVMQGN--MRRGRNKEALEFVKRLIDIE 177
           E+ F+K+L+  P   E               ++  Q       G    A+ F+ +++++ 
Sbjct: 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173

Query: 178 PNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP-----LLLR--ALHDLGRY 224
             + E + L+A C+   G+   A    K   K +              + LG +
Sbjct: 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 16/120 (13%), Positives = 42/120 (35%), Gaps = 7/120 (5%)

Query: 111 GKMRASENLKEKRDALMGKSEVEE---MFEKLLEKEPRNVEALKVVMQG----NMRRGRN 163
            +++    L E  + L+      +    +E +++ EP   E      +       +  + 
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311

Query: 164 KEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223
            EA+     ++ +EP+ V     +A  Y +      A + ++   +      +    L +
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 13/133 (9%)

Query: 100 GSNLRPSVALPGKMRASENLKEKRDALMGKSEVEE---MFEKLLEKEPRNVEALKVVMQG 156
           G +L         M   E   E    L+   ++ +    F   ++ +P N  A       
Sbjct: 10  GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAY-----Y 64

Query: 157 N-----MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKER 211
                 +  G++K AL  + ++I ++ +    +L +       GKL  A+  FK +LK  
Sbjct: 65  RRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124

Query: 212 PLLLRALHDLGRY 224
           P          + 
Sbjct: 125 PSENEEKEAQSQL 137

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 130 SEVEEMFEKLLEKEPRNVEALKVVMQGN--MRRGRNKEALEFVKRLIDIEPNEVEWKLLQ 187
           +      +K+LE    + E     ++    ++ G  ++A+  +K    ++ +  E     
Sbjct: 160 TAAIAFLDKILEVCVWDAELR--ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKI 217

Query: 188 ALCYELMGKLSTAKRLFKDILKERP 212
           +  Y  +G    +    ++ LK   
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQ 242

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 13/79 (16%), Positives = 30/79 (37%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC 190
           + +++F+ L   +  +      +       G  ++AL+       ++ NE  +    A C
Sbjct: 36  DAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95

Query: 191 YELMGKLSTAKRLFKDILK 209
           +  +G L  A+  F     
Sbjct: 96  HLQLGDLDGAESGFYSARA 114

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 11/87 (12%), Positives = 26/87 (29%)

Query: 136 FEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG 195
              L       +E L  +     + G+  +A +  + L  ++  +  + L    C + +G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 196 KLSTAKRLFKDILKERPLLLRALHDLG 222
               A + +           R      
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAA 93

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.5 bits (107), Expect = 5e-06
 Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNK--EALEFVKRLIDIEPNEVEWKLLQA 188
              +  +K+ +++             ++  G  K  +A    + + D     +     QA
Sbjct: 148 LARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207

Query: 189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222
            C+   G+   A+ + ++ L +       L +L 
Sbjct: 208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.7 bits (105), Expect = 9e-06
 Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 3/109 (2%)

Query: 102 NLRPSVALPGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG 161
           +      L     A  +L    + L    +   +F+++ +K    +  L      +M +G
Sbjct: 158 DQDEDATLTQLATAWVSLAAGGEKL---QDAYYIFQEMADKCSPTLLLLNGQAACHMAQG 214

Query: 162 RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKE 210
           R + A   ++  +D +    E  +   +  + +GK       +   LK+
Sbjct: 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 13/117 (11%), Positives = 34/117 (29%), Gaps = 9/117 (7%)

Query: 115 ASENLKEKRDALMGKSEVEEM------FEKLLEKEPRNVEALKVVMQGNMRRGRNKEALE 168
                + +RD L   +  +         +  +   P+N E   ++ +  + +     +L 
Sbjct: 6   VRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLL 65

Query: 169 FVKRLIDIEPNEVEWKLLQALCYELMGK---LSTAKRLFKDILKERPLLLRALHDLG 222
             ++ + +     E     A            +  + +    L      + AL  L 
Sbjct: 66  AYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 12/78 (15%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGN--MRRGRNKEALEFVKRLIDIEPNEVEWKLLQA 188
           +   M +K L  +   + AL  ++  +    +    +A+E  ++++D+    +       
Sbjct: 99  QTRAMIDKALALDSNEITAL--MLLASDAFMQANYAQAIELWQKVMDLNSPRINR----- 151

Query: 189 LCYELMGKLSTAKRLFKD 206
              +L+  ++ AK L + 
Sbjct: 152 --TQLVESINMAKLLQRR 167

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 10/77 (12%), Positives = 24/77 (31%)

Query: 133 EEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE 192
             +F+ L   +  +      +       G+   A+        ++  E  +    A C  
Sbjct: 41  HXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100

Query: 193 LMGKLSTAKRLFKDILK 209
             G+L+ A+       +
Sbjct: 101 QXGELAEAESGLFLAQE 117

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 13/87 (14%), Positives = 26/87 (29%)

Query: 136 FEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG 195
              L E     +E L  +     + G  ++A    + L  ++  +  + L    C + MG
Sbjct: 10  IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG 69

Query: 196 KLSTAKRLFKDILKERPLLLRALHDLG 222
           +   A   +           R      
Sbjct: 70  QYDLAIHSYSYGAVMDIXEPRFPFHAA 96

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 113 MRASENLKEKRDALMGKSEVEE---MFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEF 169
               EN  E+  +++  + + E    FE + +KEP   EA + +        ++  A+  
Sbjct: 14  YMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIA 73

Query: 170 VKRLIDIEPNEVE-WKLLQALCYELMGKLSTAKRLFKDILKERP 212
           +     ++P ++     L A+ +      + A    +  L  +P
Sbjct: 74  LNHARMLDPKDIAVHAAL-AVSHTNEHNANAALASLRAWLLSQP 116

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 11/80 (13%), Positives = 20/80 (25%)

Query: 133 EEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE 192
           +E FEK L            +     +      A ++               LL     +
Sbjct: 161 KEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK 220

Query: 193 LMGKLSTAKRLFKDILKERP 212
           +     TA      + +  P
Sbjct: 221 VFEDRDTAASYGLQLKRLYP 240

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 25/125 (20%)

Query: 117 ENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQ-------GNMRR--GRNKEAL 167
               E + A        + F   LEK       + V          G++ R   +  EAL
Sbjct: 204 FQNGEWKTAE-------KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256

Query: 168 EFVKRLIDIEPNEVE-WKLLQALCYELMGKLSTAKRLFKDILKERP-------LLLRALH 219
           ++ ++ + + P     +  +    + LMG    A   F   L  R        +L   + 
Sbjct: 257 DYHRQALVLIPQNASTYSAI-GYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315

Query: 220 DLGRY 224
                
Sbjct: 316 MYIGD 320

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 6/99 (6%)

Query: 129 KSEVEEMFEKLLEKEPRNVEALKVVMQGN--MRRGRNKEALEFVKRLIDIEPNEVE-WKL 185
               E +  + ++    N++ +  V            K   +    +++ +P       +
Sbjct: 4   NKPSETVIPESVDGLQENLDVV--VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV 61

Query: 186 LQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRY 224
                 EL  K +    L   ++   P    +   +G Y
Sbjct: 62  HIGTLVEL-NKANELFYLSHKLVDLYPSNPVSWFAVGCY 99

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 12/106 (11%)

Query: 125 ALMGK-SEVEEMFEKLLE---KEPRNVEALKVVMQGNMRR--GRNKEALEFVKRLIDIEP 178
            ++G  ++    +EK +    +     E    +  G+  R  G  ++A   +   +   P
Sbjct: 1   GVLGLEAQAVPYYEKAIASGLQGKDLAECY--LGLGSTFRTLGEYRKAEAVLANGVKQFP 58

Query: 179 NEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRY 224
           N    ++  A+    +G+      L   I+ E          +  Y
Sbjct: 59  NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS----DDETIQSY 100

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 4/109 (3%)

Query: 117 ENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGN--MRRGRNKEALEFVKRLI 174
            N  + + A+        + +K    E            G+   +      A++ + + +
Sbjct: 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW--ANLGHAYRKLKMYDAAIDALNQGL 543

Query: 175 DIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223
            +  N+       AL Y        A     + L   P  + A   L R
Sbjct: 544 LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%)

Query: 117 ENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALK----VVMQGNMRRGRNKEALEFVKR 172
           +N    ++A+       +   + +   P N          + +         E  + V+ 
Sbjct: 186 DNWPPSQNAI-------DPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEE 238

Query: 173 LIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR-YVSMTLQI 231
            ++  P   +     A  Y    +   A  L K  L+  P        +G  Y +   Q+
Sbjct: 239 ALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQV 298

Query: 232 Q 232
            
Sbjct: 299 M 299

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 18/125 (14%), Positives = 32/125 (25%), Gaps = 16/125 (12%)

Query: 107 VALPGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEA 166
           +A  G + A E +   R+AL G           L   P  V A+     G       +  
Sbjct: 41  IAKRGGVTAVEAVHAWRNALTGAP---------LNLTPEQVVAIASHDGGKQALETVQRL 91

Query: 167 LEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP-------LLLRALH 219
           L  + +   + P +V          + +  +     +        P              
Sbjct: 92  LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ 151

Query: 220 DLGRY 224
            L   
Sbjct: 152 ALETV 156

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 130 SEVEEMFEKLLEKEPRNVEA---LKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE-WKL 185
                  E  + ++P + EA   L +    N      + A+  ++R ++++PN ++    
Sbjct: 82  PVTILFMEAAILQDPGDAEAWQFLGITQAEN---ENEQAAIVALQRCLELQPNNLKALMA 138

Query: 186 LQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLG 222
           L A+ Y        A    K+ +K+ P     + +  
Sbjct: 139 L-AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 134 EMFEKLLEKEPRNVEALKVVMQGN--MRRGRNKEALEFVKRLIDIEPNEVE-WKLLQALC 190
           E  E +L +   N+        G       +   AL  ++  +D +P     WK L    
Sbjct: 6   ERLEAMLAQGTDNMLLR--FTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWL-GKT 62

Query: 191 YELMGKLSTAKRLFKDILKERP 212
            +  G  + A++ ++  L    
Sbjct: 63  LQGQGDRAGARQAWESGLAAAQ 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.79
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.74
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.72
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.71
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.71
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.7
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.7
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.69
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.69
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.69
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.68
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.67
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.66
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.66
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.66
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.66
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.65
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.64
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.64
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.63
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.63
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.62
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.62
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.61
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.61
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.61
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.6
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.6
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.6
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.6
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.6
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.59
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.59
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.58
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.57
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.56
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.55
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.54
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.54
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.53
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.53
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.53
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.52
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.52
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.51
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.51
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.5
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.5
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.5
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.5
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.49
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.49
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.49
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.49
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.49
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.49
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.49
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.48
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.48
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.48
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.48
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.48
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.48
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.48
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.47
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.47
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.47
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.47
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.46
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.46
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.46
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.46
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.46
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.45
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.45
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.45
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.45
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.45
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.44
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.44
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.43
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.43
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.42
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.4
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.4
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.38
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.38
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.38
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.38
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.37
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.37
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.36
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.36
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.36
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.36
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.36
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.36
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.36
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.36
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.35
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.34
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.33
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.32
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.31
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.31
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.31
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.3
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.29
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.29
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.28
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.25
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.25
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.25
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.25
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.24
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.21
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.2
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.19
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.19
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.18
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.17
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.16
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.16
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.15
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.15
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.15
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.14
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.14
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.13
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.12
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.1
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.1
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.1
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.07
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.04
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.03
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.03
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.02
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.02
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.01
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.0
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.0
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.99
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.99
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.99
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.98
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.98
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.98
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.96
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.95
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.95
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.94
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.93
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.91
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.9
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.89
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.89
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.88
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.85
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.84
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.82
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.81
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.77
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.77
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.75
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.74
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.73
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.71
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.7
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.69
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.69
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.69
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.64
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.62
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.59
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.56
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.55
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.44
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.43
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.37
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.32
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.29
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.15
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.15
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.04
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.97
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.96
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.93
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.9
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.85
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.8
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.77
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.66
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.46
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.37
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.28
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.17
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.1
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.07
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.03
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.01
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.78
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.69
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.59
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.53
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.49
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.36
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.34
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.41
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.07
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.78
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.67
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.89
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.56
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.4
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.66
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.02
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.86
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	89.73
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.64
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	89.5
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	88.9
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	88.88
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	87.67
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	86.37
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	86.15
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	85.62
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	83.42
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	82.99
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.4
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	82.07
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	81.52
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	81.45
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	80.06

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.79  E-value=2e-18  Score=131.62  Aligned_cols=104  Identities=14%  Similarity=0.138  Sum_probs=99.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      .....+++++|++.|+++++.+|+++++|..+|.+|.+.|++++|+++++++++++|+++.+|+.+|.+|..+|++++|+
T Consensus        22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~  101 (126)
T 4gco_A           22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQ  101 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHH
Confidence            33446789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHH
Q 026642          202 RLFKDILKERPLLLRALHDLGRYV  225 (235)
Q Consensus       202 ~~l~kaL~~~P~~~~a~~~l~~~~  225 (235)
                      +.|+++++++|++..++.+++.++
T Consensus       102 ~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A          102 RAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999998764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.74  E-value=6.2e-17  Score=126.52  Aligned_cols=112  Identities=9%  Similarity=-0.007  Sum_probs=101.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      +..-....+++++|++.|+++++.+|+++++|..+|.+|...|++++|+.+|+++++++|+++.+++.+|.+|...|+++
T Consensus        37 la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  116 (150)
T 4ga2_A           37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD  116 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence            34444556779999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHH-HHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          199 TAKRL-FKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       199 ~A~~~-l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +|.+. ++++++++|++..++..++.++...++
T Consensus       117 ~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          117 GRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             SHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            87766 599999999999999999988887765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.72  E-value=1.1e-17  Score=130.86  Aligned_cols=103  Identities=8%  Similarity=0.020  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      .++|++.+++++..+|+++.++..+|.+|++.|+|++|+++|+++++++|+++.+|..+|.+|...|++++|+..|++++
T Consensus        13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al   92 (150)
T 4ga2_A           13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSV   92 (150)
T ss_dssp             HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCHHHHHHHHHHHhhchhh
Q 026642          209 KERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       209 ~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      +++|++..+++++|.+|.+.++.
T Consensus        93 ~~~p~~~~~~~~la~~~~~~~~~  115 (150)
T 4ga2_A           93 ELNPTQKDLVLKIAELLCKNDVT  115 (150)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCSS
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCh
Confidence            99999999999999999877654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.71  E-value=9.4e-17  Score=131.58  Aligned_cols=106  Identities=20%  Similarity=0.153  Sum_probs=101.2

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKV----------------VMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQ  187 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~----------------la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~l  187 (235)
                      ...+++++|+..|+++++.+|+++++|..                +|.+|.+.|++++|+.+|+++++++|+++.+++.+
T Consensus        15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   94 (208)
T 3urz_A           15 IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEAC   94 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            44677999999999999999999999999                99999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          188 ALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       188 A~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      |.+|...|++++|+..|+++++++|++..+++++|.+|...+
T Consensus        95 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           95 AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999986554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=3.1e-16  Score=117.42  Aligned_cols=107  Identities=8%  Similarity=0.015  Sum_probs=100.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      .....+++++|++.|+++++.+|+++.+|..+|.++...|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+
T Consensus        13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~   92 (126)
T 3upv_A           13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL   92 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence            33456679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHC------CCCHHHHHHHHHHHhhc
Q 026642          202 RLFKDILKER------PLLLRALHDLGRYVSMT  228 (235)
Q Consensus       202 ~~l~kaL~~~------P~~~~a~~~l~~~~~~~  228 (235)
                      +.|+++++++      |++..++..+..+..+.
T Consensus        93 ~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           93 ETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            9999999999      99999999988887653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.71  E-value=2.2e-16  Score=130.15  Aligned_cols=113  Identities=19%  Similarity=0.181  Sum_probs=79.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR-----------GRNKEALEFVKRLIDIEPNEVEWKLLQ  187 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~-----------g~~~eAi~~l~kai~l~P~~~~a~~~l  187 (235)
                      +.......+++++|+..|+++++.+|++++++..+|.++...           |++++|+..|+++++++|+++.++..+
T Consensus        45 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l  124 (217)
T 2pl2_A           45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR  124 (217)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            333444455667777777777777777777777777777777           777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          188 ALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       188 A~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      |.+|..+|++++|++.|+++++++ ++..++.++|.++...++..
T Consensus       125 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~  168 (217)
T 2pl2_A          125 GLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLD  168 (217)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHH
Confidence            777777777777777777777777 66777777777776666543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.70  E-value=1.8e-16  Score=153.86  Aligned_cols=113  Identities=16%  Similarity=0.115  Sum_probs=72.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      +.......+++++|++.|+++++.+|+++++|..+|.+|.++|++++|+++|+++++++|+++++++++|.+|..+|+++
T Consensus        49 Lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~  128 (723)
T 4gyw_A           49 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP  128 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            33344445556666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      +|++.|+++++++|++..++.++|.++...++.
T Consensus       129 eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A          129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence            666666666666666666666666666655553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.70  E-value=2.5e-17  Score=130.18  Aligned_cols=98  Identities=12%  Similarity=0.001  Sum_probs=91.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL  197 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~  197 (235)
                      .+.......+++++|++.|+++++.+|+++++|..+|.+|...|++++|+++|+++++++|+++.+|+.+|.+|..+|++
T Consensus        41 ~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~  120 (151)
T 3gyz_A           41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP  120 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence            34445556778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCH
Q 026642          198 STAKRLFKDILKERPLLL  215 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~~  215 (235)
                      ++|++.|+++++++|+..
T Consensus       121 ~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          121 LKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHhCCCHH
Confidence            999999999999999874

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.69  E-value=5.6e-16  Score=122.41  Aligned_cols=105  Identities=11%  Similarity=0.065  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      ..++...++++++.+|+++++++.+|..+.+.|++++|+++|+++++++|+++.+|..+|.+|..+|++++|++.|++++
T Consensus        18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            34455678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          209 KERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       209 ~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +++|+++.+|+++|.+|.+.++..+
T Consensus        98 ~l~P~~~~~~~~lg~~~~~lg~~~e  122 (151)
T 3gyz_A           98 ALGKNDYTPVFHTGQCQLRLKAPLK  122 (151)
T ss_dssp             HHSSSCCHHHHHHHHHHHHTTCHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999887543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.69  E-value=5e-16  Score=121.80  Aligned_cols=105  Identities=14%  Similarity=0.022  Sum_probs=96.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ......+++++|++.|+++++.+|+++.+|..+|.+|...|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|
T Consensus        19 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A   98 (164)
T 3sz7_A           19 NAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGA   98 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Confidence            34445677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHH
Q 026642          201 KRLFKDILKERPLLLRALHDLGRYV  225 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~a~~~l~~~~  225 (235)
                      ++.|+++++++|++..+++..++..
T Consensus        99 ~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           99 KEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999999999977665555553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.69  E-value=8.9e-16  Score=113.93  Aligned_cols=111  Identities=12%  Similarity=0.083  Sum_probs=103.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      ........+++++|++.|+++++.+|++.+++..+|.++...|++++|+++++++++.+|++..+++.+|.++...|+++
T Consensus        22 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~  101 (133)
T 2lni_A           22 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT  101 (133)
T ss_dssp             HHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHH
Confidence            33344456778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      +|++.|+++++.+|++..++..++.++.+.+
T Consensus       102 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A          102 KAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            9999999999999999999999999987654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.68  E-value=1.5e-16  Score=121.10  Aligned_cols=96  Identities=9%  Similarity=0.101  Sum_probs=89.5

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Q 026642          138 KLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRA  217 (235)
Q Consensus       138 ~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a  217 (235)
                      ++..+||+.++++..+|..|++.|+|++|+++|+++++++|+++.+|..+|.+|..+|++++|++.|+++++++|++..+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchhhcc
Q 026642          218 LHDLGRYVSMTLQIQS  233 (235)
Q Consensus       218 ~~~l~~~~~~~~~~~~  233 (235)
                      |+++|.++.+.++.++
T Consensus        84 ~~~lg~~~~~~~~~~~   99 (126)
T 4gco_A           84 YIRKAACLVAMREWSK   99 (126)
T ss_dssp             HHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHCCCHHH
Confidence            9999999999887543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.67  E-value=5.8e-15  Score=108.53  Aligned_cols=108  Identities=16%  Similarity=0.052  Sum_probs=102.6

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      ...+++++|++.|+++++.+|+++.++..+|.++...|++++|+++++++++.+|+++.+++.+|.++...|++++|++.
T Consensus        23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  102 (131)
T 2vyi_A           23 MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAY  102 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          204 FKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      |+++++.+|++..++..++.++.+.++.
T Consensus       103 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A          103 YKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999887653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.67  E-value=1.4e-15  Score=125.31  Aligned_cols=106  Identities=15%  Similarity=0.077  Sum_probs=97.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      +++++|+..|+++++.+|+++++|..+|.++...|++++|+.+|+++++++ +++.+++.+|.+|..+|++++|+..|++
T Consensus        98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~  176 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAK  176 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            448999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          207 ILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +++.+|++..++.+++.++.+.++.++
T Consensus       177 al~~~P~~~~~~~~la~~~~~~g~~~~  203 (217)
T 2pl2_A          177 ALEQAPKDLDLRVRYASALLLKGKAEE  203 (217)
T ss_dssp             HHHHSTTCHHHHHHHHHHHTC------
T ss_pred             HHHhCCCChHHHHHHHHHHHHccCHHH
Confidence            999999999999999999998887654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.66  E-value=1.9e-15  Score=146.69  Aligned_cols=121  Identities=18%  Similarity=0.146  Sum_probs=112.2

Q ss_pred             ccchHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 026642          113 MRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE  192 (235)
Q Consensus       113 ~~~~~~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~  192 (235)
                      ..+...+.......+++++|++.|+++++.+|+++++|..+|.+|.++|++++|+++|+++++++|+++++++++|.+|.
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~   88 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK   88 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            33444556666677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          193 LMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       193 ~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      .+|++++|++.|+++++++|++..+|.++|.+|.+.++.++
T Consensus        89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~e  129 (723)
T 4gyw_A           89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE  129 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999887544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.66  E-value=9.9e-16  Score=115.62  Aligned_cols=96  Identities=16%  Similarity=0.136  Sum_probs=85.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ......+++++|+..|+++++.+|+++++|..+|.++...|++++|+.+|+++++++|+++.+++.+|.+|...|++++|
T Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A  104 (121)
T 1hxi_A           25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA  104 (121)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            34445677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCCHH
Q 026642          201 KRLFKDILKERPLLLR  216 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~  216 (235)
                      +..|+++++.+|++..
T Consensus       105 ~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          105 LASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHC-------
T ss_pred             HHHHHHHHHhCcCCCC
Confidence            9999999999998753

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.66  E-value=2.3e-15  Score=117.44  Aligned_cols=98  Identities=10%  Similarity=-0.036  Sum_probs=91.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      .......+++++|+..|+++++.+|+++++|..+|.++...|++++|+++|+++++++|+++.+++.+|.+|..+|++++
T Consensus        28 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~  107 (148)
T 2vgx_A           28 AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAE  107 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence            33445567799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCHHH
Q 026642          200 AKRLFKDILKERPLLLRA  217 (235)
Q Consensus       200 A~~~l~kaL~~~P~~~~a  217 (235)
                      |++.|+++++++|+++..
T Consensus       108 A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A          108 AESGLFLAQELIANXPEF  125 (148)
T ss_dssp             HHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHCcCCCcc
Confidence            999999999999987543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.66  E-value=1.9e-15  Score=116.20  Aligned_cols=100  Identities=13%  Similarity=0.024  Sum_probs=92.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      .......+++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|+++++++|+++.+++.+|.+|..+|++++
T Consensus        25 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  104 (142)
T 2xcb_A           25 GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDG  104 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHH
Confidence            33445567799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCHHHHH
Q 026642          200 AKRLFKDILKERPLLLRALH  219 (235)
Q Consensus       200 A~~~l~kaL~~~P~~~~a~~  219 (235)
                      |++.|+++++++|++.....
T Consensus       105 A~~~~~~al~~~p~~~~~~~  124 (142)
T 2xcb_A          105 AESGFYSARALAAAQPAHEA  124 (142)
T ss_dssp             HHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHHhCCCCcchHH
Confidence            99999999999998854443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.65  E-value=8.7e-15  Score=105.85  Aligned_cols=104  Identities=14%  Similarity=0.162  Sum_probs=98.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR  202 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~  202 (235)
                      ....+++++|+..|+++++.+|+++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++...|++++|.+
T Consensus        14 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   93 (118)
T 1elw_A           14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR   93 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence            34466799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHh
Q 026642          203 LFKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       203 ~l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      .|+++++.+|++..++..++.+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           94 TYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHhhc
Confidence            999999999999999999988754

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.64  E-value=3.9e-15  Score=116.43  Aligned_cols=109  Identities=15%  Similarity=0.103  Sum_probs=98.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEK------------------EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEW  183 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~------------------~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a  183 (235)
                      .....+++++|+..|+++++.                  +|.+..+|..+|.+|.+.|+|++|+.+++++++++|+++.+
T Consensus        20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a   99 (162)
T 3rkv_A           20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKA   99 (162)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHH
Confidence            334466799999999999999                  77888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHhhchh
Q 026642          184 KLLQALCYELMGKLSTAKRLFKDILKERPLLL-RALHDLGRYVSMTLQ  230 (235)
Q Consensus       184 ~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~-~a~~~l~~~~~~~~~  230 (235)
                      ++.+|.+|..+|++++|+..|+++++++|++. .+...+..+..+..+
T Consensus       100 ~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A          100 LFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998 666777776655443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.64  E-value=9.5e-16  Score=119.69  Aligned_cols=101  Identities=13%  Similarity=0.072  Sum_probs=95.9

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 026642          133 EEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP  212 (235)
Q Consensus       133 ~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P  212 (235)
                      ...|+++++.+|++.+++..+|..+...|++++|+..|+++++++|+++.+|+.+|.+|...|++++|++.|+++++++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhchhhcc
Q 026642          213 LLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       213 ~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++..+++++|.+|...++.++
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~  107 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAE  107 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHH
Confidence            999999999999998887543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.63  E-value=3e-14  Score=103.82  Aligned_cols=107  Identities=22%  Similarity=0.286  Sum_probs=100.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      .....+++++|++.|+++++.+|++..++..+|.++...|++++|+.+++++++.+|++...+..+|.++...|++++|+
T Consensus        18 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~   97 (125)
T 1na0_A           18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI   97 (125)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHH
Confidence            33445679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          202 RLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       202 ~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ..|+++++.+|++..++.+++.++.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           98 EYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            999999999999999999999988654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.63  E-value=3.4e-15  Score=134.66  Aligned_cols=104  Identities=11%  Similarity=0.063  Sum_probs=58.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR-NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~-~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      +.+++|++.|+++++.+|++.++|..+|.++...|+ +++|+.+|+++++++|+++.+|+.+|.++..+|++++|+..|+
T Consensus       111 g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~  190 (382)
T 2h6f_A          111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA  190 (382)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            345555555555555555555555555555555554 5555555555555555555555555555555555555555555


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          206 DILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      ++++++|++..+|+++|.++.+.++
T Consensus       191 kal~ldP~~~~a~~~lg~~~~~~g~  215 (382)
T 2h6f_A          191 DILNQDAKNYHAWQHRQWVIQEFKL  215 (382)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCccCHHHHHHHHHHHHHcCC
Confidence            5555555555555555555554443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.63  E-value=1.1e-14  Score=109.50  Aligned_cols=112  Identities=9%  Similarity=0.005  Sum_probs=101.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      ........+++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+++++++++|+++.+++.+|.+|..+|+++
T Consensus        15 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~   94 (137)
T 3q49_B           15 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYD   94 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHH
Confidence            34444556779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCC-----CHHHHHHHHHHHhhchh
Q 026642          199 TAKRLFKDILKERPL-----LLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~-----~~~a~~~l~~~~~~~~~  230 (235)
                      +|++.|+++++.+|+     +..+...+..+..+...
T Consensus        95 ~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           95 EAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998     67777777777665544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.62  E-value=2.8e-15  Score=119.62  Aligned_cols=96  Identities=16%  Similarity=0.170  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRN----------KEALEFVKRLIDIEPNEVEWKLLQALCYELMG---  195 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~----------~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g---  195 (235)
                      +++|++.++++++.+|+++++|..+|.++...+++          ++|+..|+++|+++|++.++|+++|.+|..+|   
T Consensus        18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~   97 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   97 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence            89999999999999999999999999999998875          59999999999999999999999999999885   


Q ss_pred             --------CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 026642          196 --------KLSTAKRLFKDILKERPLLLRALHDLGRY  224 (235)
Q Consensus       196 --------~~~~A~~~l~kaL~~~P~~~~a~~~l~~~  224 (235)
                              ++++|+++|+++++++|++..+...+.++
T Consensus        98 P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           98 PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  134 (158)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                    89999999999999999998777766654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=3e-14  Score=107.66  Aligned_cols=108  Identities=9%  Similarity=0.006  Sum_probs=100.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL  197 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~  197 (235)
                      ......+++++|++.|+++++.+|++   ..++..+|.+|...|++++|+++++++++++|+++.+++.+|.+|..+|++
T Consensus        36 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  115 (148)
T 2dba_A           36 NELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRL  115 (148)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCH
Confidence            34445677999999999999999998   899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          198 STAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ++|++.|+++++.+|++..++..++.+..+.
T Consensus       116 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  146 (148)
T 2dba_A          116 DQAVLDLQRCVSLEPKNKVFQEALRNISGPS  146 (148)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence            9999999999999999999999888876543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.61  E-value=1.5e-15  Score=113.02  Aligned_cols=93  Identities=13%  Similarity=0.082  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEK---EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~---~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      +++++|+..|+++++.   +|+++.++..+|.+|...|++++|+++++++++++|+++.+++.+|.+|..+|++++|++.
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   83 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL   83 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence            4578899999999999   6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCHHHHH
Q 026642          204 FKDILKERPLLLRALH  219 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~  219 (235)
                      |+++++.+|++..+..
T Consensus        84 ~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           84 LLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHCCCHHHHH
T ss_pred             HHHHHHhCCCcHHHHH
Confidence            9999999999966554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.61  E-value=1.3e-15  Score=117.17  Aligned_cols=100  Identities=11%  Similarity=0.041  Sum_probs=92.5

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 026642          134 EMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPL  213 (235)
Q Consensus       134 ~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~  213 (235)
                      ..|+++++.+|++.+++..+|..+++.|++++|+..|+++++.+|+++.+|+.+|.+|..+|++++|+..|+++++++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhchhhcc
Q 026642          214 LLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       214 ~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +..+++++|.++...++..+
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~  104 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDG  104 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHH
Confidence            99999999999998887543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.61  E-value=3e-14  Score=112.77  Aligned_cols=106  Identities=16%  Similarity=0.219  Sum_probs=75.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ++++|+..+++++..+|++..++..+|..+...+++++|++.++++++++|++..++..+|.+|..+|++++|++.|+++
T Consensus        54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~  133 (184)
T 3vtx_A           54 LPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT  133 (184)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            34444444444444444444444444444444555555666667777777778888888999999999999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          208 LKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++.+|++..+++++|.+|.+.++.++
T Consensus       134 l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A          134 ISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            99999999999999999888877543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.61  E-value=2.2e-14  Score=117.48  Aligned_cols=112  Identities=12%  Similarity=-0.018  Sum_probs=103.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEP-RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P-~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      ......+++++|++.|+++++.+| .+..++..+|.++...|++++|+++++++++++|++..++..+|.+|..+|++++
T Consensus        15 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~   94 (228)
T 4i17_A           15 NDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQE   94 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHH
Confidence            334456779999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCH-------HHHHHHHHHHhhchhhc
Q 026642          200 AKRLFKDILKERPLLL-------RALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       200 A~~~l~kaL~~~P~~~-------~a~~~l~~~~~~~~~~~  232 (235)
                      |++.|+++++.+|++.       .++.++|.++.+.++.+
T Consensus        95 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~  134 (228)
T 4i17_A           95 YIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE  134 (228)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence            9999999999999998       66888888888777644

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.61  E-value=4.4e-14  Score=111.76  Aligned_cols=93  Identities=17%  Similarity=0.146  Sum_probs=67.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR  202 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~  202 (235)
                      .....++++|++.++++++.+|++.+++..+|.+|.+.|++++|+++|+++++++|+++.++..+|.+|..+|++++|++
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~  162 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK  162 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence            33345567777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHCCCCH
Q 026642          203 LFKDILKERPLLL  215 (235)
Q Consensus       203 ~l~kaL~~~P~~~  215 (235)
                      .|+++++.+|+++
T Consensus       163 ~~~~al~~~p~~a  175 (184)
T 3vtx_A          163 YFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHTTHHHH
T ss_pred             HHHHHHhCCccCH
Confidence            7777777777654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.61  E-value=6.1e-14  Score=104.29  Aligned_cols=105  Identities=18%  Similarity=0.078  Sum_probs=95.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcC
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNV---EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMG  195 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~---~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g  195 (235)
                      .....+++++|++.|+++++.+|++.   +++..+|.++...|++++|+.+|+++++.+|++   +.+++.+|.+|..+|
T Consensus        11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g   90 (129)
T 2xev_A           11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG   90 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence            34456679999999999999999999   899999999999999999999999999999999   899999999999999


Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642          196 KLSTAKRLFKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      ++++|++.|+++++.+|++..+......+..
T Consensus        91 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           91 KNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            9999999999999999999777766655543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.60  E-value=2e-15  Score=120.64  Aligned_cols=105  Identities=12%  Similarity=0.045  Sum_probs=93.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPR-------NVE-----ALKVVMQGNMRRGRNKEALEFVKRLIDI-------EPNEVEW  183 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~-------~~~-----a~~~la~~~~~~g~~~eAi~~l~kai~l-------~P~~~~a  183 (235)
                      ....+++++|++.|+++++.+|+       +..     +|.++|.++...|+|++|+.+|+++|++       +|++..+
T Consensus        21 l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A  100 (159)
T 2hr2_A           21 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL  100 (159)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHH
Confidence            34456799999999999999999       554     9999999999999999999999999999       9999999


Q ss_pred             H----HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          184 K----LLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       184 ~----~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      |    +++|.++..+|++++|+..|+++++++|++...+-++..+..+
T Consensus       101 ~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~  148 (159)
T 2hr2_A          101 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV  148 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred             HHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            9    9999999999999999999999999999996666555555433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.60  E-value=1.9e-14  Score=126.80  Aligned_cols=109  Identities=9%  Similarity=0.002  Sum_probs=103.1

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRN---------------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQA  188 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~---------------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA  188 (235)
                      ...+++++|+..|+++++.+|++               ..+|..+|.+|.+.|++++|+.+|+++++++|+++.+++.+|
T Consensus       158 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  237 (336)
T 1p5q_A          158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG  237 (336)
T ss_dssp             HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            34567899999999999999999               799999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       189 ~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      .+|..+|++++|+..|+++++++|++..++.+++.++.+.++..
T Consensus       238 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  281 (336)
T 1p5q_A          238 EAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  281 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998876643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.60  E-value=5e-14  Score=108.46  Aligned_cols=107  Identities=15%  Similarity=0.094  Sum_probs=96.9

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      ...+++++|+..|+++++.+|++.+++..+|.++...|++++|+++++++++++|+++.+++.+|.++..+|++++|+..
T Consensus        24 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~  103 (166)
T 1a17_A           24 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD  103 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCHHHHHH--HHHHHhhchh
Q 026642          204 FKDILKERPLLLRALHD--LGRYVSMTLQ  230 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~--l~~~~~~~~~  230 (235)
                      |+++++.+|++..++..  ++..+.+.++
T Consensus       104 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~  132 (166)
T 1a17_A          104 YETVVKVKPHDKDAKMKYQECNKIVKQKA  132 (166)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999888744  4433554444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.60  E-value=3.2e-14  Score=114.75  Aligned_cols=108  Identities=12%  Similarity=0.029  Sum_probs=101.7

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNV----------------EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQ  187 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~----------------~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~l  187 (235)
                      ...+++++|++.|+++++..|+++                .++..+|.++...|++++|+.+++++++++|+++.+++.+
T Consensus        49 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  128 (198)
T 2fbn_A           49 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKL  128 (198)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            346679999999999999999887                8999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          188 ALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       188 A~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      |.+|..+|++++|++.|+++++++|++..++..++.++.+.++.
T Consensus       129 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  172 (198)
T 2fbn_A          129 GVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  172 (198)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998776654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.60  E-value=9.6e-15  Score=131.72  Aligned_cols=108  Identities=11%  Similarity=0.056  Sum_probs=102.0

Q ss_pred             HHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          120 KEKRDALMG-KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       120 ~e~~~~~~~-~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      ..-....+. +++|++.|+++++.+|++..+|..+|.++...|++++|+.+|+++++++|++..+|+.+|.++..+|+++
T Consensus       138 g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~  217 (382)
T 2h6f_A          138 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD  217 (382)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChH
Confidence            334444565 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      +|++.|+++++++|++..+|+++|.++.+
T Consensus       218 eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          218 NELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             THHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999988

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.59  E-value=6.5e-15  Score=116.25  Aligned_cols=105  Identities=11%  Similarity=0.109  Sum_probs=81.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC-YELMGKL--STAKRLF  204 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~-~~~~g~~--~~A~~~l  204 (235)
                      ++++|++.++++++.+|+++++|..+|.+|...|++++|+.+|+++++++|+++.++..+|.+ +...|++  ++|+..|
T Consensus        25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~  104 (177)
T 2e2e_A           25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI  104 (177)
T ss_dssp             --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            367777788888888888888888888888888888888888888888888888888888877 6677887  8888888


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          205 KDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +++++.+|++..+++++|.+|.+.++..
T Consensus       105 ~~al~~~p~~~~~~~~la~~~~~~g~~~  132 (177)
T 2e2e_A          105 DKALALDSNEITALMLLASDAFMQANYA  132 (177)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcccHH
Confidence            8888888888888888887777766543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.59  E-value=1.8e-14  Score=118.08  Aligned_cols=113  Identities=15%  Similarity=0.094  Sum_probs=104.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-------EWKLLQALCY  191 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-------~a~~~lA~~~  191 (235)
                      ........+++++|++.|+++++.+|++..+|..+|.+|...|++++|+++++++++++|+++       .++..+|.++
T Consensus        48 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  127 (228)
T 4i17_A           48 CGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF  127 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH
Confidence            334445567799999999999999999999999999999999999999999999999999999       6699999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHhhchhh
Q 026642          192 ELMGKLSTAKRLFKDILKERPL--LLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       192 ~~~g~~~~A~~~l~kaL~~~P~--~~~a~~~l~~~~~~~~~~  231 (235)
                      ..+|++++|++.|+++++.+|+  +..++.++|.+|...++.
T Consensus       128 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          128 QQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999  999999999999876654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.58  E-value=2.5e-14  Score=108.61  Aligned_cols=95  Identities=13%  Similarity=0.126  Sum_probs=86.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-------EWKLLQALCYE  192 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-------~a~~~lA~~~~  192 (235)
                      .......+++++|++.|+++++.+|+++.+|..+|.+|...|++++|+++++++++++|++.       .++..+|.++.
T Consensus        15 G~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ   94 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            33445567899999999999999999999999999999999999999999999999998763       57888999999


Q ss_pred             HcCCHHHHHHHHHHHHHHCCCC
Q 026642          193 LMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       193 ~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      .+|++++|++.|+++++.+|+.
T Consensus        95 ~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           95 KQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HTTCHHHHHHHHHHHHHHSCCH
T ss_pred             HcCCHHHHHHHHHHHHhhCcCH
Confidence            9999999999999999999863

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.57  E-value=1.5e-13  Score=100.84  Aligned_cols=108  Identities=21%  Similarity=0.275  Sum_probs=102.0

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      ..+++++|+..++++++.+|++..++..+|.++...|++++|+++++++++.+|++..++..+|.++...|++++|++.+
T Consensus        13 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~   92 (136)
T 2fo7_A           13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY   92 (136)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          205 KDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +++++.+|++..++..++.++.+.++..
T Consensus        93 ~~~~~~~~~~~~~~~~la~~~~~~~~~~  120 (136)
T 2fo7_A           93 QKALELDPRSAEAWYNLGNAYYKQGDYD  120 (136)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHccHH
Confidence            9999999999999999999998877644

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.56  E-value=4.9e-14  Score=103.92  Aligned_cols=99  Identities=12%  Similarity=0.110  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642          131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKE  210 (235)
Q Consensus       131 eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~  210 (235)
                      +|++.|+++++.+|+++.+|..+|.+|...|++++|+.+|+++++++|++..+|+.+|.+|..+|++++|+..|+++++.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC--HHHHHHHHHHHhhch
Q 026642          211 RPLL--LRALHDLGRYVSMTL  229 (235)
Q Consensus       211 ~P~~--~~a~~~l~~~~~~~~  229 (235)
                      +|++  ..++..+...+.+.+
T Consensus        83 ~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           83 AQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHhc
Confidence            8854  566666665555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=3.7e-14  Score=105.97  Aligned_cols=90  Identities=11%  Similarity=0.070  Sum_probs=85.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 026642          144 PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR  223 (235)
Q Consensus       144 P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~  223 (235)
                      |.+++.|..+|..+++.|++++|+++|+++++++|+++.+|..+|.+|..+|++++|++.|+++++.+|++..+++++|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchhhcc
Q 026642          224 YVSMTLQIQS  233 (235)
Q Consensus       224 ~~~~~~~~~~  233 (235)
                      ++.+.++..+
T Consensus        81 ~~~~~~~~~~   90 (126)
T 3upv_A           81 AQIAVKEYAS   90 (126)
T ss_dssp             HHHHTTCHHH
T ss_pred             HHHHHhCHHH
Confidence            9998887543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.55  E-value=2.8e-13  Score=105.03  Aligned_cols=115  Identities=15%  Similarity=0.144  Sum_probs=107.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL  197 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~  197 (235)
                      .+.......+++++|++.++++++.+|++..++..+|.++...|++++|+++++++++.+|++..++..+|.++...|++
T Consensus        47 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  126 (186)
T 3as5_A           47 HLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRF  126 (186)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcH
Confidence            34444456778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          198 STAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++|++.++++++.+|++..++..++.++.+.++..
T Consensus       127 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  161 (186)
T 3as5_A          127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE  161 (186)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999887754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.54  E-value=1.9e-13  Score=100.45  Aligned_cols=108  Identities=12%  Similarity=0.098  Sum_probs=98.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcC
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-------VEWKLLQALCYELMG  195 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-------~~a~~~lA~~~~~~g  195 (235)
                      ....+++++|+..|+++++.+|+++.++..+|.++...|++++|+.+++++++.+|++       ..+++.+|.+|...|
T Consensus        14 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~   93 (131)
T 1elr_A           14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE   93 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhc
Confidence            3445679999999999999999999999999999999999999999999999999887       899999999999999


Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          196 KLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      ++++|++.|+++++.+| +...+..++.+.....+.
T Consensus        94 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           94 KYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            99999999999999999 688888888887766553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.54  E-value=9.8e-14  Score=119.30  Aligned_cols=114  Identities=10%  Similarity=0.033  Sum_probs=100.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-----------------------------
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEF-----------------------------  169 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~-----------------------------  169 (235)
                      ........+++++|++.|+++++.+|++++++..+|.++.+.|++++|+..                             
T Consensus       123 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~  202 (287)
T 3qou_A          123 QAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADT  202 (287)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccC
Confidence            334445677899999999999999999999999999999999999987655                             


Q ss_pred             -----HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHhhchhhc
Q 026642          170 -----VKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL--LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       170 -----l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~--~~a~~~l~~~~~~~~~~~  232 (235)
                           |+++++++|+++++++.+|.+|...|++++|++.|+++++.+|++  ..++.+++.++...++..
T Consensus       203 ~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          203 PEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence                 555577899999999999999999999999999999999999999  889999999998877643

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.53  E-value=1.2e-13  Score=127.68  Aligned_cols=107  Identities=15%  Similarity=0.134  Sum_probs=99.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .+++++|++.|+++++.+|+++.+|..+|.+|.++|++++|+++++++++++|+++.+++.+|.+|..+|++++|++.|+
T Consensus        19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~   98 (477)
T 1wao_1           19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE   98 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHH--Hhhchhhc
Q 026642          206 DILKERPLLLRALHDLGRY--VSMTLQIQ  232 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~--~~~~~~~~  232 (235)
                      ++++.+|++..++..++.+  +.+.++.+
T Consensus        99 ~al~~~p~~~~~~~~l~~~~~~~~~g~~~  127 (477)
T 1wao_1           99 TVVKVKPHDKDAKMKYQECNKIVKQKAFE  127 (477)
T ss_dssp             HHHHHSTTCTTHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888888877  66555433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.53  E-value=9.6e-14  Score=127.37  Aligned_cols=109  Identities=11%  Similarity=0.042  Sum_probs=98.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRN---------------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQ  187 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~---------------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~l  187 (235)
                      ....+++++|+..|+++++.+|++               ..+|.++|.+|.+.|+|++|+.+|+++++++|+++.+++++
T Consensus       278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~  357 (457)
T 1kt0_A          278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRR  357 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Confidence            344678999999999999999999               79999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          188 ALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       188 A~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      |.+|..+|++++|+..|+++++++|++..++.+++.++.+.++.
T Consensus       358 g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          358 GEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998877653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.53  E-value=3.7e-14  Score=136.22  Aligned_cols=113  Identities=16%  Similarity=0.136  Sum_probs=104.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      .......+++++|++.|+++++.+|+++++|..+|.+|...|++++|++.|+++++++|+++.+++++|.+|..+|++++
T Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~  519 (681)
T 2pzi_A          440 VRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE  519 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Confidence            33444567799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          200 AKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       200 A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                       ++.|+++++++|++..+|+++|.++.+.++.++
T Consensus       520 -~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~  552 (681)
T 2pzi_A          520 -HKFYQTVWSTNDGVISAAFGLARARSAEGDRVG  552 (681)
T ss_dssp             -TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             -HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH
Confidence             999999999999999999999999998887543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.52  E-value=2.3e-13  Score=97.49  Aligned_cols=96  Identities=15%  Similarity=0.071  Sum_probs=88.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-C
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN--EVEWKLLQALCYELM-G  195 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~--~~~a~~~lA~~~~~~-g  195 (235)
                      +.......+++++|+..|+++++.+|++..++..+|.++...|++++|+++++++++.+|+  +..++..+|.++... |
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~   91 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEG   91 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhC
Confidence            3344455677999999999999999999999999999999999999999999999999999  999999999999999 9


Q ss_pred             CHHHHHHHHHHHHHHCCCC
Q 026642          196 KLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~P~~  214 (235)
                      ++++|++.+++++..+|.+
T Consensus        92 ~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           92 KEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CSHHHHHHHHHHGGGCCCC
T ss_pred             CHHHHHHHHHHHhhcccCC
Confidence            9999999999999999875

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.52  E-value=4.9e-13  Score=108.91  Aligned_cols=109  Identities=19%  Similarity=0.224  Sum_probs=75.2

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR  202 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~  202 (235)
                      ....+++++|++.++++++.+|++.+++..+|.++...|++++|+++++++++.+|++..++..+|.++...|++++|++
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            33445566777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          203 LFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       203 ~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      .|+++++.+|++..++..++.+|.+.++.
T Consensus       181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~  209 (243)
T 2q7f_A          181 QFAAVTEQDPGHADAFYNAGVTYAYKENR  209 (243)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHccCH
Confidence            77777777777766777777766666553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.52  E-value=2.5e-13  Score=126.65  Aligned_cols=110  Identities=15%  Similarity=0.101  Sum_probs=103.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      +.......+++++|++.|+++++.+|++.+++..+|.+|...|++++|+++|+++++++|++..+++.+|.+|..+|+++
T Consensus        29 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  108 (568)
T 2vsy_A           29 LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAE  108 (568)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence            44444556779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      +|++.|+++++.+|++..++.+++.++.+.
T Consensus       109 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A          109 AAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999888

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.52  E-value=6.6e-13  Score=108.12  Aligned_cols=114  Identities=9%  Similarity=0.027  Sum_probs=106.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS  198 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~  198 (235)
                      +.......+++++|++.|+++++.+|++..++..+|.++...|++++|+++++++++.+|++..++..+|.++...|+++
T Consensus        63 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  142 (243)
T 2q7f_A           63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPK  142 (243)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Confidence            34444556789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +|++.++++++.+|++..++..+|.++.+.++.+
T Consensus       143 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A          143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999998877644

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.51  E-value=1.7e-13  Score=122.74  Aligned_cols=110  Identities=10%  Similarity=0.029  Sum_probs=102.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLE----------------KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKL  185 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~----------------~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~  185 (235)
                      .....+++++|++.|+++++                .+|.+..+|..+|.+|.+.|++++|+++++++++++|+++.+++
T Consensus       232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  311 (370)
T 1ihg_A          232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALY  311 (370)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHH
Confidence            33446788999999999999                78889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          186 LQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       186 ~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      .+|.+|..+|++++|++.|+++++++|++..++..++.++.+..+.
T Consensus       312 ~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~  357 (370)
T 1ihg_A          312 RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  357 (370)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988776654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.51  E-value=1.9e-13  Score=119.04  Aligned_cols=105  Identities=10%  Similarity=0.050  Sum_probs=101.2

Q ss_pred             CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPR--NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~--~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      ++++|++.|+++++.+|+  ++.++..+|.+|...|++++|+++|+++++++|+++.+|..+|.+|...|++++|++.|+
T Consensus       192 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  271 (365)
T 4eqf_A          192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT  271 (365)
T ss_dssp             HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            478999999999999999  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          206 DILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++++.+|++..++.++|.+|.+.++..
T Consensus       272 ~al~~~p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          272 RALEIQPGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            999999999999999999999887754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=3.6e-13  Score=110.25  Aligned_cols=105  Identities=11%  Similarity=0.056  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      +++|++.++++++.+|++..++..+|.++...|++++|+++++++++.+|+++.++..+|.+|...|++++|++.|++++
T Consensus       121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            45555566666668888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          209 KERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       209 ~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +.+|++..++..+|.++.+.++..+
T Consensus       201 ~~~~~~~~~~~~l~~~~~~~g~~~~  225 (258)
T 3uq3_A          201 EKDPNFVRAYIRKATAQIAVKEYAS  225 (258)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhCHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999999988877543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.50  E-value=1.5e-13  Score=107.46  Aligned_cols=91  Identities=16%  Similarity=0.133  Sum_probs=86.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 026642          143 EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLG  222 (235)
Q Consensus       143 ~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~  222 (235)
                      ++.++++|..+|.+++..|+|++|+++|+++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..+|+++|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhcc
Q 026642          223 RYVSMTLQIQS  233 (235)
Q Consensus       223 ~~~~~~~~~~~  233 (235)
                      .+|.+.++..+
T Consensus        87 ~~~~~~g~~~~   97 (164)
T 3sz7_A           87 LARFDMADYKG   97 (164)
T ss_dssp             HHHHHTTCHHH
T ss_pred             HHHHHccCHHH
Confidence            99998887543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.50  E-value=3.4e-13  Score=104.61  Aligned_cols=109  Identities=15%  Similarity=0.196  Sum_probs=103.1

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      ...+++++|++.++++++.+|++..++..+|.++...|++++|+++++++++.+|++..++..+|.++...|++++|.+.
T Consensus        19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~   98 (186)
T 3as5_A           19 AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPL   98 (186)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence            34566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          204 FKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++++++.+|++..++..+|.++.+.++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  127 (186)
T 3as5_A           99 LIKVAEANPINFNVRFRLGVALDNLGRFD  127 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCcHhHHHHHHHHHHHHHcCcHH
Confidence            99999999999999999999998877644

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.50  E-value=2e-13  Score=108.33  Aligned_cols=109  Identities=13%  Similarity=0.029  Sum_probs=81.7

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH----------------------------------HH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEAL----------------------------------EF  169 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi----------------------------------~~  169 (235)
                      ...+++++|+..|+++++.+|++++++..+|.++...|++++|+                                  ..
T Consensus        17 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~   96 (176)
T 2r5s_A           17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKR   96 (176)
T ss_dssp             HHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHH
Confidence            33455666666666666666666666666666666666666554                                  45


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHhhchhhc
Q 026642          170 VKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL--LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       170 l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~--~~a~~~l~~~~~~~~~~~  232 (235)
                      ++++++++|+++.+++.+|.++...|++++|+..|+++++.+|++  ..++.+++.++...++..
T Consensus        97 ~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  161 (176)
T 2r5s_A           97 LEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN  161 (176)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence            556667788888899999999999999999999999999999876  568888888888776644

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.50  E-value=3.4e-13  Score=101.25  Aligned_cols=92  Identities=18%  Similarity=0.096  Sum_probs=86.2

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 026642          141 EKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHD  220 (235)
Q Consensus       141 ~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~  220 (235)
                      ..++.+++.+..+|..++..|++++|+.+|+++++++|+++.++..+|.++..+|++++|+..++++++.+|++..++++
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhc
Q 026642          221 LGRYVSMTLQIQ  232 (235)
Q Consensus       221 l~~~~~~~~~~~  232 (235)
                      +|.++.+.++..
T Consensus        83 l~~~~~~~~~~~   94 (137)
T 3q49_B           83 LGQCQLEMESYD   94 (137)
T ss_dssp             HHHHHHHTTCHH
T ss_pred             HHHHHHHHhhHH
Confidence            999999887754

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.49  E-value=1.4e-13  Score=104.50  Aligned_cols=88  Identities=11%  Similarity=0.120  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------HHH
Q 026642          145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL-------LRA  217 (235)
Q Consensus       145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~-------~~a  217 (235)
                      +.+.++..+|..++++|+|++|+++|+++++++|+++.+|.++|.+|..+|++++|++.|+++++++|++       ..+
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            3467889999999999999999999999999999999999999999999999999999999999999876       357


Q ss_pred             HHHHHHHHhhchhhc
Q 026642          218 LHDLGRYVSMTLQIQ  232 (235)
Q Consensus       218 ~~~l~~~~~~~~~~~  232 (235)
                      |.++|.++...++..
T Consensus        86 ~~~lg~~~~~~~~~~  100 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLS  100 (127)
T ss_dssp             HHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHcCCHH
Confidence            888888888777643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.49  E-value=3.5e-13  Score=94.07  Aligned_cols=85  Identities=20%  Similarity=0.275  Sum_probs=80.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 026642          144 PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR  223 (235)
Q Consensus       144 P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~  223 (235)
                      +.+++++..+|.++...|++++|+.+++++++.+|++..+++.+|.++...|++++|++.|+++++.+|++..++.+++.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 026642          224 YVSMT  228 (235)
Q Consensus       224 ~~~~~  228 (235)
                      ++.+.
T Consensus        86 ~~~~~   90 (91)
T 1na3_A           86 AKQKQ   90 (91)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.49  E-value=1.5e-13  Score=132.12  Aligned_cols=109  Identities=14%  Similarity=0.084  Sum_probs=103.4

Q ss_pred             HhcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 026642          124 DALMGKSEVEEMFEKLL--------EKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG  195 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL--------~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g  195 (235)
                      ...+++++|++.|++++        +.+|++.+++..+|.+|.+.|++++|++.|+++++++|++..+|+.+|.+|..+|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            55677899999999999        9999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          196 KLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++++|++.|+++++++|++..+++++|.++.+.++.+
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~  518 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTD  518 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCC
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Confidence            9999999999999999999999999999999887754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.49  E-value=1.4e-13  Score=128.34  Aligned_cols=107  Identities=12%  Similarity=0.050  Sum_probs=86.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      +++++|++.|+++++.+|++.++|..+|.++...|++++|+++|+++++++|++..++..+|.+|..+|++++|++.|++
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   82 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ   82 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          207 ILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +++.+|++..+++++|.+|.+.++.++
T Consensus        83 al~~~p~~~~~~~~la~~~~~~g~~~~  109 (568)
T 2vsy_A           83 ASDAAPEHPGIALWLGHALEDAGQAEA  109 (568)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999998887543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.49  E-value=6.2e-13  Score=115.08  Aligned_cols=102  Identities=15%  Similarity=0.093  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPR--NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~--~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      +++|+..|+++++.+|+  ++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++++|++.|++
T Consensus       197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  276 (368)
T 1fch_A          197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR  276 (368)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45555555555555555  4555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHCCCCHHHHHHHHHHHhhchh
Q 026642          207 ILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +++.+|++..++.++|.+|.+.++
T Consensus       277 al~~~~~~~~~~~~l~~~~~~~g~  300 (368)
T 1fch_A          277 ALELQPGYIRSRYNLGISCINLGA  300 (368)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCC
Confidence            555555555555555555444443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=2.6e-13  Score=124.79  Aligned_cols=106  Identities=7%  Similarity=0.005  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcC
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR--------GRNKEALEFVKRLIDIEP---NEVEWKLLQALCYELMG  195 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~--------g~~~eAi~~l~kai~l~P---~~~~a~~~lA~~~~~~g  195 (235)
                      +++++|++.|+++++.+|++..+|..+|.+|...        |++++|+++|+++++++|   +++.+|+.+|.+|..+|
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g  272 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE  272 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC
Confidence            4589999999999999999999999999999999        999999999999999999   99999999999999999


Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          196 KLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++++|++.|+++++++|++..++.+++.++...++.+
T Consensus       273 ~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~  309 (474)
T 4abn_A          273 SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT  309 (474)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988777644

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.49  E-value=3.5e-13  Score=112.86  Aligned_cols=114  Identities=12%  Similarity=0.032  Sum_probs=101.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYE  192 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~  192 (235)
                      ........+++++|++.|+++++.+|++   .+++..+|.+|.+.|++++|+..|+++++++|++   +.+++.+|.++.
T Consensus        21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~  100 (261)
T 3qky_A           21 RAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY  100 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH
Confidence            3344455778999999999999999999   9999999999999999999999999999998854   678999999999


Q ss_pred             H--------cCCHHHHHHHHHHHHHHCCCCHHHH-----------------HHHHHHHhhchhhc
Q 026642          193 L--------MGKLSTAKRLFKDILKERPLLLRAL-----------------HDLGRYVSMTLQIQ  232 (235)
Q Consensus       193 ~--------~g~~~~A~~~l~kaL~~~P~~~~a~-----------------~~l~~~~~~~~~~~  232 (235)
                      .        +|++++|+..|+++++.+|++..+.                 +.+|.+|.+.++..
T Consensus       101 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~  165 (261)
T 3qky_A          101 KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE  165 (261)
T ss_dssp             HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence            9        9999999999999999999985555                 78899988887744

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.49  E-value=1.2e-13  Score=114.53  Aligned_cols=105  Identities=14%  Similarity=0.036  Sum_probs=90.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      .......+++++|+..|+++++.+|+++++|..+|.++...|++++|+++|+++++++|+++.++..+|.+|...|++++
T Consensus        50 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  129 (275)
T 1xnf_A           50 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL  129 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHH
Confidence            33444566789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHH
Q 026642          200 AKRLFKDILKERPLLLRALHDLGRY  224 (235)
Q Consensus       200 A~~~l~kaL~~~P~~~~a~~~l~~~  224 (235)
                      |++.|+++++.+|++...+..++..
T Consensus       130 A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          130 AQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999997666555544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.48  E-value=2.1e-13  Score=125.46  Aligned_cols=106  Identities=16%  Similarity=0.041  Sum_probs=100.2

Q ss_pred             HHHhcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------
Q 026642          122 KRDALMGK-SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELM------  194 (235)
Q Consensus       122 ~~~~~~~~-~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~------  194 (235)
                      .....+++ ++|++.|+++++.+|+++++|..+|.+|...|++++|+++|+++++++|+ ..++..+|.+|..+      
T Consensus       111 ~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~  189 (474)
T 4abn_A          111 ALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGD  189 (474)
T ss_dssp             HHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHH
T ss_pred             HHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChh
Confidence            33445678 99999999999999999999999999999999999999999999999999 79999999999999      


Q ss_pred             ---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          195 ---GKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       195 ---g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                         |++++|++.|+++++++|++..+|+++|.+|...
T Consensus       190 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  226 (474)
T 4abn_A          190 EHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL  226 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence               9999999999999999999999999999999876

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.48  E-value=3.5e-13  Score=101.46  Aligned_cols=86  Identities=13%  Similarity=-0.089  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      +.+..+|..+++.|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+++++|.++.+
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chhhcc
Q 026642          228 TLQIQS  233 (235)
Q Consensus       228 ~~~~~~  233 (235)
                      .++..+
T Consensus        98 ~g~~~~  103 (121)
T 1hxi_A           98 EHNANA  103 (121)
T ss_dssp             HHHHHH
T ss_pred             cCCHHH
Confidence            877543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.48  E-value=1.1e-12  Score=107.93  Aligned_cols=114  Identities=17%  Similarity=0.079  Sum_probs=98.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCC
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID--IEPNEVEWKLLQALCYELMGK  196 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~--l~P~~~~a~~~lA~~~~~~g~  196 (235)
                      +.......+++++|++.|+++++.+|++..++..+|.++...|++++|+++++++++  .+|++..++..+|.+|...|+
T Consensus        77 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  156 (252)
T 2ho1_A           77 LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK  156 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC
Confidence            334445566789999999999999999999999999999999999999999999998  788888899999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +++|++.|+++++.+|++..++..++.++.+.++..
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999998888877644

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.48  E-value=8.5e-13  Score=115.99  Aligned_cols=103  Identities=14%  Similarity=0.108  Sum_probs=54.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      .+++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++++|+++.++..+|.++...|++++|++.|+++
T Consensus       218 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  297 (388)
T 1w3b_A          218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA  297 (388)
T ss_dssp             CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHCCCCHHHHHHHHHHHhhchh
Q 026642          208 LKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      ++.+|++..++.+++.++.+.++
T Consensus       298 l~~~p~~~~~~~~l~~~~~~~g~  320 (388)
T 1w3b_A          298 LRLCPTHADSLNNLANIKREQGN  320 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HhhCcccHHHHHHHHHHHHHcCC
Confidence            55555555555555555544443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.48  E-value=1.4e-13  Score=98.66  Aligned_cols=90  Identities=10%  Similarity=0.095  Sum_probs=86.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHH
Q 026642          143 EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPL--LLRALHD  220 (235)
Q Consensus       143 ~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~--~~~a~~~  220 (235)
                      +|++++++..+|.++...|++++|+.+++++++++|++..++..+|.++...|++++|++.|+++++.+|+  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHhhc-hhhc
Q 026642          221 LGRYVSMT-LQIQ  232 (235)
Q Consensus       221 l~~~~~~~-~~~~  232 (235)
                      ++.++.+. ++.+
T Consensus        82 l~~~~~~~~~~~~   94 (112)
T 2kck_A           82 KADALRYIEGKEV   94 (112)
T ss_dssp             HHHHHTTCSSCSH
T ss_pred             HHHHHHHHhCCHH
Confidence            99999988 7644

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.48  E-value=9.7e-13  Score=115.61  Aligned_cols=108  Identities=17%  Similarity=0.182  Sum_probs=77.8

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      ...+++++|+..++++++.+|.++++|..+|.++.+.|++++|++.|+++++++|++..++..+|.++...|++++|++.
T Consensus        44 ~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  123 (388)
T 1w3b_A           44 FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA  123 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            33455677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          204 FKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      |+++++.+|++..++..+|.++.+.++.
T Consensus       124 ~~~al~~~p~~~~~~~~l~~~~~~~g~~  151 (388)
T 1w3b_A          124 YVSALQYNPDLYCVRSDLGNLLKALGRL  151 (388)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHccCH
Confidence            7777777777777777777777665543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.48  E-value=5.7e-13  Score=107.33  Aligned_cols=107  Identities=11%  Similarity=-0.014  Sum_probs=98.0

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      ...+++++|++.|++++  +| ++.++..+|.+|...|++++|+++|+++++++|+++.+++.+|.+|..+|++++|++.
T Consensus        17 ~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~   93 (213)
T 1hh8_A           17 ADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD   93 (213)
T ss_dssp             HHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHH
Confidence            34567999999999986  34 7899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCH----------------HHHHHHHHHHhhchhhcc
Q 026642          204 FKDILKERPLLL----------------RALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       204 l~kaL~~~P~~~----------------~a~~~l~~~~~~~~~~~~  233 (235)
                      |+++++..|++.                .+++++|.++.+.++..+
T Consensus        94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  139 (213)
T 1hh8_A           94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK  139 (213)
T ss_dssp             HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH
Confidence            999999888866                999999999998887543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.48  E-value=3.3e-13  Score=97.47  Aligned_cols=87  Identities=16%  Similarity=0.123  Sum_probs=81.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL------LRALH  219 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~------~~a~~  219 (235)
                      ++++|..+|..+...|++++|+++|+++++++|+++.++.++|.+|..+|++++|++.|+++++.+|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999999999      89999


Q ss_pred             HHHHHHhhchhhc
Q 026642          220 DLGRYVSMTLQIQ  232 (235)
Q Consensus       220 ~l~~~~~~~~~~~  232 (235)
                      .++.++...++.+
T Consensus        83 ~~~~~~~~~~~~~   95 (111)
T 2l6j_A           83 RLELAQGAVGSVQ   95 (111)
T ss_dssp             HHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhHh
Confidence            9999988776543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.47  E-value=9.3e-13  Score=105.58  Aligned_cols=113  Identities=19%  Similarity=0.239  Sum_probs=99.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCC
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR-GRNKEALEFVKRLID--IEPNEVEWKLLQALCYELMGK  196 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~-g~~~eAi~~l~kai~--l~P~~~~a~~~lA~~~~~~g~  196 (235)
                      .......+++++|++.|+++++.+|++..++..+|.++... |++++|+++++++++  .+|++..++..+|.++...|+
T Consensus        49 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  128 (225)
T 2vq2_A           49 AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ  128 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence            33444566789999999999999999999999999999999 999999999999999  667778899999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +++|++.++++++.+|++..++..++.++.+.++..
T Consensus       129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A          129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999988877654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.47  E-value=2.5e-13  Score=98.69  Aligned_cols=89  Identities=13%  Similarity=0.165  Sum_probs=77.9

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHH
Q 026642          142 KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL--LRALH  219 (235)
Q Consensus       142 ~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~--~~a~~  219 (235)
                      .+|+++.+|..+|.+|...|++++|+++|+++++++|+++.+|+.+|.+|..+|++++|++.|++++++.|++  ..+..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            4799999999999999999999999999999999999999999999999999999999999999999988754  66666


Q ss_pred             HHHHHHhhchh
Q 026642          220 DLGRYVSMTLQ  230 (235)
Q Consensus       220 ~l~~~~~~~~~  230 (235)
                      .+...+.+...
T Consensus        82 ~l~~~l~~~~~   92 (100)
T 3ma5_A           82 ELQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHccc
Confidence            66666655443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.47  E-value=2.1e-12  Score=107.07  Aligned_cols=103  Identities=15%  Similarity=0.065  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEK----EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       129 ~~eA~~~~e~aL~~----~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      +++|++.|+++++.    +|+++.++..+|.++...|++++|+++++++++++|+++.++..+|.+|...|++++|++.|
T Consensus        21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  100 (275)
T 1xnf_A           21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF  100 (275)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence            66777777777775    34566777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          205 KDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      +++++.+|++..++.++|.++.+.++.
T Consensus       101 ~~al~~~~~~~~~~~~la~~~~~~g~~  127 (275)
T 1xnf_A          101 DSVLELDPTYNYAHLNRGIALYYGGRD  127 (275)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred             HHHHhcCccccHHHHHHHHHHHHhccH
Confidence            777777777777777777777666654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.47  E-value=1.7e-12  Score=104.02  Aligned_cols=114  Identities=18%  Similarity=0.006  Sum_probs=96.9

Q ss_pred             HHHHHHhc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 026642          119 LKEKRDAL-MGKSEVEEMFEKLLE--KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG  195 (235)
Q Consensus       119 ~~e~~~~~-~~~~eA~~~~e~aL~--~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g  195 (235)
                      +..-.... +++++|+..++++++  .+|.+..++..+|.++...|++++|+++++++++.+|++..++..+|.++...|
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  161 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG  161 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence            33344456 778999999999998  677778999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHhhchhhc
Q 026642          196 KLSTAKRLFKDILKERP-LLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~P-~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++++|.+.++++++.+| ++..++..++.++.+.++.+
T Consensus       162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (225)
T 2vq2_A          162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ  199 (225)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence            99999999999999999 88888887777777666543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.46  E-value=5.2e-13  Score=110.97  Aligned_cols=103  Identities=14%  Similarity=0.026  Sum_probs=50.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE----VEWKLLQALCYELMGKLSTAKR  202 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~----~~a~~~lA~~~~~~g~~~~A~~  202 (235)
                      +++++|+..|+++++.+|++++++..+|.++...|++++|+++++++++ .|++    ..++..+|.+|...|++++|++
T Consensus        17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~   95 (272)
T 3u4t_A           17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQ   95 (272)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence            3345555555555555555555555555555555555555555555554 2222    2224455555555555555555


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          203 LFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       203 ~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      .|+++++.+|++..++.++|.+|.+.++
T Consensus        96 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~  123 (272)
T 3u4t_A           96 QYQAAVDRDTTRLDMYGQIGSYFYNKGN  123 (272)
T ss_dssp             HHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHccC
Confidence            5555555555555555555555444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.46  E-value=1.8e-12  Score=112.11  Aligned_cols=96  Identities=11%  Similarity=0.090  Sum_probs=89.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      .......+++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.+|...|++++
T Consensus       224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  303 (368)
T 1fch_A          224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE  303 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Confidence            33444567789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCH
Q 026642          200 AKRLFKDILKERPLLL  215 (235)
Q Consensus       200 A~~~l~kaL~~~P~~~  215 (235)
                      |+..|+++++.+|++.
T Consensus       304 A~~~~~~al~~~~~~~  319 (368)
T 1fch_A          304 AVEHFLEALNMQRKSR  319 (368)
T ss_dssp             HHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            9999999999999873

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.46  E-value=1.6e-12  Score=109.98  Aligned_cols=111  Identities=14%  Similarity=0.101  Sum_probs=90.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      .....+++++|++.++++++.+|++..++..+|.++...|++++|+++++++++.+|++..++..+|.+|...|++++|+
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~  260 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA  260 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence            33445667888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHCCC------------CHHHHHHHHHHHhhchhhc
Q 026642          202 RLFKDILKERPL------------LLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       202 ~~l~kaL~~~P~------------~~~a~~~l~~~~~~~~~~~  232 (235)
                      +.|+++++.+|+            +..++..++.++.+.++..
T Consensus       261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  303 (327)
T 3cv0_A          261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD  303 (327)
T ss_dssp             HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence            888888888888            6788888888887776643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.46  E-value=1.6e-12  Score=102.44  Aligned_cols=98  Identities=11%  Similarity=0.098  Sum_probs=90.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQG-NMRRGRN--KEALEFVKRLIDIEPNEVEWKLLQALCYELMGK  196 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~-~~~~g~~--~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~  196 (235)
                      .......+++++|+..|+++++.+|+++.++..+|.+ +...|++  ++|+.+++++++.+|++..+++.+|.+|...|+
T Consensus        51 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  130 (177)
T 2e2e_A           51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN  130 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc
Confidence            3344456679999999999999999999999999999 8899999  999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHH
Q 026642          197 LSTAKRLFKDILKERPLLLRA  217 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a  217 (235)
                      +++|+..|+++++.+|++...
T Consensus       131 ~~~A~~~~~~al~~~p~~~~~  151 (177)
T 2e2e_A          131 YAQAIELWQKVMDLNSPRINR  151 (177)
T ss_dssp             HHHHHHHHHHHHHTCCTTSCH
T ss_pred             HHHHHHHHHHHHhhCCCCccH
Confidence            999999999999999998433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.46  E-value=8.9e-13  Score=108.53  Aligned_cols=106  Identities=12%  Similarity=-0.002  Sum_probs=100.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      +++++|++.|+++++.+|++..++..+|.++...|++++|+++++++++.+|++..++..+|.+|...|++++|++.|++
T Consensus        51 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  130 (252)
T 2ho1_A           51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLE  130 (252)
T ss_dssp             TCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH--HCCCCHHHHHHHHHHHhhchhhc
Q 026642          207 ILK--ERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       207 aL~--~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +++  .+|++..++..+|.++.+.++.+
T Consensus       131 ~~~~~~~~~~~~~~~~la~~~~~~g~~~  158 (252)
T 2ho1_A          131 ASQDTLYPERSRVFENLGLVSLQMKKPA  158 (252)
T ss_dssp             HTTCTTCTTHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhCccCcccHHHHHHHHHHHHHcCCHH
Confidence            999  88999999999999998887644

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.46  E-value=1.5e-12  Score=106.29  Aligned_cols=96  Identities=19%  Similarity=0.352  Sum_probs=84.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELM----  194 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~----  194 (235)
                      +.......+++++|+..|+++++.+|+++++|..+|.++...|++++|+.+|+++++++|+++.+++.+|.+|+..    
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            3444455678999999999999999999999999999999999999999999999999999999999988877544    


Q ss_pred             -------------------------------CCHHHHHHHHHHHHHHCCCC
Q 026642          195 -------------------------------GKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       195 -------------------------------g~~~~A~~~l~kaL~~~P~~  214 (235)
                                                     |++++|+..|+++++++|+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence                                           45778888888888888874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.45  E-value=2.5e-13  Score=116.47  Aligned_cols=94  Identities=10%  Similarity=0.070  Sum_probs=89.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ......+++++|+..|+++++.+|+++.++..+|.+|...|++++|+..++++++++|++..+++.+|.+|..+|++++|
T Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A   91 (281)
T 2c2l_A           12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEA   91 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            34445677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCC
Q 026642          201 KRLFKDILKERPLL  214 (235)
Q Consensus       201 ~~~l~kaL~~~P~~  214 (235)
                      ++.|+++++++|++
T Consensus        92 ~~~~~~al~l~p~~  105 (281)
T 2c2l_A           92 IANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCccc
Confidence            99999999999976

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.45  E-value=1.9e-12  Score=109.70  Aligned_cols=106  Identities=13%  Similarity=0.045  Sum_probs=64.6

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG-RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g-~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      ..+++++|+..++++++.+|+++++|..+|.++...| ++++|+++++++++++|+++.++..+|.++...|++++|++.
T Consensus        68 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  147 (330)
T 3hym_B           68 ELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA  147 (330)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHH
Confidence            3344566666666666666666666666666666666 666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          204 FKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      |+++++.+|++..++..+|.++...++
T Consensus       148 ~~~a~~~~~~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B          148 YFTAAQLMKGCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhh
Confidence            666666666665555556555555544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.45  E-value=2.4e-12  Score=111.95  Aligned_cols=97  Identities=16%  Similarity=0.203  Sum_probs=87.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL  197 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~  197 (235)
                      .........+++++|++.|+++++.+|+++++|..+|.+|...|++++|+++|+++++++|++..++..+|.+|...|++
T Consensus        70 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  149 (365)
T 4eqf_A           70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQ  149 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccH
Confidence            34445555677999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCC
Q 026642          198 STAKRLFKDILKERPLL  214 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~  214 (235)
                      ++|++.|+++++.+|++
T Consensus       150 ~~A~~~~~~al~~~p~~  166 (365)
T 4eqf_A          150 QDACEALKNWIKQNPKY  166 (365)
T ss_dssp             HHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHhCccc
Confidence            99999999888877764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.45  E-value=1.6e-12  Score=110.21  Aligned_cols=114  Identities=13%  Similarity=0.008  Sum_probs=105.8

Q ss_pred             HHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642          119 LKEKRDALM-GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL  197 (235)
Q Consensus       119 ~~e~~~~~~-~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~  197 (235)
                      +.......+ ++++|++.|+++++.+|++.++|..+|.++...|++++|+++++++++.+|++...+..+|.+|...|++
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence            334444556 7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          198 STAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++|++.|+++++.+|++..++..+|.++.+.++..
T Consensus       176 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~  210 (330)
T 3hym_B          176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWK  210 (330)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHH
Confidence            99999999999999999999999999999887644

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.45  E-value=2.4e-12  Score=111.13  Aligned_cols=113  Identities=11%  Similarity=0.005  Sum_probs=94.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVM--QGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK  196 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la--~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~  196 (235)
                      ..+-....++.++|++.|+++++.+|++.......+  .++...|++++|+..|+++++.+|+++.+++.+|.++..+|+
T Consensus       136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  215 (291)
T 3mkr_A          136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR  215 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence            444455567789999999999999999875554444  333445889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      +++|+..|+++++.+|++..++.++|.++...++.
T Consensus       216 ~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~  250 (291)
T 3mkr_A          216 WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP  250 (291)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999888877664

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.44  E-value=2.2e-12  Score=105.55  Aligned_cols=104  Identities=9%  Similarity=0.026  Sum_probs=97.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ......+++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++.+|+++.++..+|.+|..+|++++|
T Consensus       147 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            34445677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHC------CCCHHHHHHHHHH
Q 026642          201 KRLFKDILKER------PLLLRALHDLGRY  224 (235)
Q Consensus       201 ~~~l~kaL~~~------P~~~~a~~~l~~~  224 (235)
                      ++.|+++++.+      |++..++..+..+
T Consensus       227 ~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          227 LETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99999999999      9998888877654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.44  E-value=2.7e-12  Score=108.63  Aligned_cols=106  Identities=12%  Similarity=0.102  Sum_probs=101.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ++++|++.++++++.+|++..++..+|.++...|++++|+++++++++.+|+++.++..+|.++...|++++|++.|+++
T Consensus       153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  232 (327)
T 3cv0_A          153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA  232 (327)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          208 LKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++.+|++..++..++.++.+.++.++
T Consensus       233 ~~~~~~~~~~~~~l~~~~~~~g~~~~  258 (327)
T 3cv0_A          233 LDINPGYVRVMYNMAVSYSNMSQYDL  258 (327)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999998877543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.43  E-value=1.9e-12  Score=107.51  Aligned_cols=113  Identities=9%  Similarity=0.042  Sum_probs=102.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL  197 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~  197 (235)
                      .+..-....+++++|++.|+++++.+|++.++|..+|.+|...|++++|+++++++++++|+++.++..+|...+..+++
T Consensus        79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~  158 (272)
T 3u4t_A           79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY  158 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence            34445556678999999999999999999999999999999999999999999999999999999999999656667799


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          198 STAKRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      ++|++.|+++++.+|++..+++.++.++...++
T Consensus       159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            999999999999999999999999999887765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.43  E-value=3.6e-12  Score=102.62  Aligned_cols=108  Identities=11%  Similarity=-0.029  Sum_probs=95.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------------H
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV----------------E  182 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~----------------~  182 (235)
                      +.......+++++|++.|+++++.+|+++.++..+|.+|...|++++|+++|++++++.|++.                .
T Consensus        43 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  122 (213)
T 1hh8_A           43 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE  122 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchH
Confidence            444445567899999999999999999999999999999999999999999999999888876                9


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642          183 WKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      +++.+|.+|..+|++++|++.|+++++.+|++.......++...
T Consensus       123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~  166 (213)
T 1hh8_A          123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV  166 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence            99999999999999999999999999999988555555554444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.42  E-value=2.9e-12  Score=109.41  Aligned_cols=102  Identities=23%  Similarity=0.189  Sum_probs=95.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ......+++++|+..|+++++.+|++++++..+|.++...|++++|+..++++++++|++..++..+|.++...|++++|
T Consensus        11 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A   90 (359)
T 3ieg_A           11 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEA   90 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHH
Confidence            33445667999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCC---CCHHHHHHHH
Q 026642          201 KRLFKDILKERP---LLLRALHDLG  222 (235)
Q Consensus       201 ~~~l~kaL~~~P---~~~~a~~~l~  222 (235)
                      +..|+++++.+|   ++..++..++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           91 EDDFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcccChHHHHHHHH
Confidence            999999999999   8888888773

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.41  E-value=3.4e-13  Score=118.97  Aligned_cols=102  Identities=12%  Similarity=0.073  Sum_probs=80.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNV-----------------EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQA  188 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~-----------------~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA  188 (235)
                      .+++++|+..|+++++.+|++.                 .+|..+|.+|.+.|+|++|+.+|+++++++|+++.+++++|
T Consensus       192 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  271 (338)
T 2if4_A          192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG  271 (338)
T ss_dssp             SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4567999999999999999987                 49999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       189 ~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      .+|..+|++++|+.+|+++++++|++..++..++.+..+
T Consensus       272 ~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          272 KAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988887443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.40  E-value=1.8e-12  Score=95.73  Aligned_cols=90  Identities=12%  Similarity=0.197  Sum_probs=85.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 026642          143 EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLG  222 (235)
Q Consensus       143 ~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~  222 (235)
                      .|.++.+|..+|..+...|++++|+++|+++++.+|++..++..+|.+|...|++++|++.++++++.+|++..+++++|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhchhhc
Q 026642          223 RYVSMTLQIQ  232 (235)
Q Consensus       223 ~~~~~~~~~~  232 (235)
                      .++.+.++..
T Consensus        92 ~~~~~~~~~~  101 (133)
T 2lni_A           92 AALEAMKDYT  101 (133)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHHHHhhHH
Confidence            9999887754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.40  E-value=4e-12  Score=106.36  Aligned_cols=111  Identities=15%  Similarity=0.040  Sum_probs=99.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHH--
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMR--------RGRNKEALEFVKRLIDIEPNEVEWK--  184 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~--------~g~~~eAi~~l~kai~l~P~~~~a~--  184 (235)
                      .+.......+++++|+..|+++++.+|++   .+++..+|.++..        .|++++|+..|+++++.+|++..++  
T Consensus        57 ~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  136 (261)
T 3qky_A           57 YLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDA  136 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHH
Confidence            34445556778999999999999998754   6899999999999        9999999999999999999987666  


Q ss_pred             ---------------HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHhhc
Q 026642          185 ---------------LLQALCYELMGKLSTAKRLFKDILKERPLL---LRALHDLGRYVSMT  228 (235)
Q Consensus       185 ---------------~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~~l~~~~~~~  228 (235)
                                     +.+|.+|...|++++|+..|+++++.+|++   ..+++.+|.+|.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          137 TQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence                           888999999999999999999999999995   68999999999866

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.38  E-value=2.8e-13  Score=119.29  Aligned_cols=105  Identities=17%  Similarity=0.111  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---------------VEWKLLQALCYEL  193 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---------------~~a~~~lA~~~~~  193 (235)
                      +++|++.|+++++.+|+++.++..+|.++++.|++++|+.+|+++++++|++               ..+++++|.+|..
T Consensus       129 ~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~  208 (336)
T 1p5q_A          129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK  208 (336)
T ss_dssp             EECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888888889999999999999999999999999999999999999999               6999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          194 MGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       194 ~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +|++++|+..|+++++++|++..+++++|.+|.+.++..+
T Consensus       209 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  248 (336)
T 1p5q_A          209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL  248 (336)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Confidence            9999999999999999999999999999999998887543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.38  E-value=3e-12  Score=105.53  Aligned_cols=97  Identities=11%  Similarity=0.059  Sum_probs=86.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHH--
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE---WKLLQALCYEL--  193 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~---a~~~lA~~~~~--  193 (235)
                      .....+++++|+..|+++++.+|++   .+++..+|.+|.+.|++++|++.|+++++.+|++..   +++.+|.++..  
T Consensus        13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~   92 (225)
T 2yhc_A           13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD   92 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence            3344567999999999999999887   479999999999999999999999999999999864   88999999987  


Q ss_pred             ----------------cCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642          194 ----------------MGKLSTAKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       194 ----------------~g~~~~A~~~l~kaL~~~P~~~~a~  218 (235)
                                      .|++++|+..|+++++.+|++..++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~  133 (225)
T 2yhc_A           93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT  133 (225)
T ss_dssp             C--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred             hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence                            5799999999999999999996444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.38  E-value=5e-12  Score=104.19  Aligned_cols=115  Identities=13%  Similarity=0.062  Sum_probs=100.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhC
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVE---ALKVVMQGNMR------------------RGRNKEALEFVKRLIDIE  177 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~---a~~~la~~~~~------------------~g~~~eAi~~l~kai~l~  177 (235)
                      +.......+++++|+..|+++++.+|++..   ++..+|.++..                  .|++++|+..|+++++.+
T Consensus        47 lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  126 (225)
T 2yhc_A           47 LIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY  126 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence            344555567899999999999999999875   89999999886                  579999999999999999


Q ss_pred             CCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHhhchhhcc
Q 026642          178 PNEVEWK-----------------LLQALCYELMGKLSTAKRLFKDILKERPLLL---RALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       178 P~~~~a~-----------------~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~---~a~~~l~~~~~~~~~~~~  233 (235)
                      |++..++                 +.+|.+|...|++++|+..|+++++.+|++.   .+++.+|.+|.+.++..+
T Consensus       127 P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~  202 (225)
T 2yhc_A          127 PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ  202 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence            9987654                 5789999999999999999999999999984   789999999999887543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.38  E-value=6.3e-12  Score=90.52  Aligned_cols=87  Identities=14%  Similarity=0.119  Sum_probs=82.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYV  225 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~  225 (235)
                      .++++..+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchhhc
Q 026642          226 SMTLQIQ  232 (235)
Q Consensus       226 ~~~~~~~  232 (235)
                      .+.++..
T Consensus        83 ~~~~~~~   89 (118)
T 1elw_A           83 EFLNRFE   89 (118)
T ss_dssp             HHTTCHH
T ss_pred             HHHhhHH
Confidence            8887644

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.37  E-value=1e-11  Score=105.92  Aligned_cols=103  Identities=14%  Similarity=-0.036  Sum_probs=50.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP---NEVEWKLLQ------------ALCY  191 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P---~~~~a~~~l------------A~~~  191 (235)
                      +++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|   ++..++..+            |.++
T Consensus        51 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (359)
T 3ieg_A           51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA  130 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555555555555555555555555555555555555555555   444444333            3444


Q ss_pred             HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          192 ELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       192 ~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      ...|++++|++.++++++.+|++..++..+|.++.+.+
T Consensus       131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (359)
T 3ieg_A          131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG  168 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC
Confidence            44444444444444444444444444444444444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.37  E-value=3.2e-12  Score=102.03  Aligned_cols=87  Identities=10%  Similarity=-0.084  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN-------EVE-----WKLLQALCYELMGKLSTAKRLFKDILKE----  210 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~-------~~~-----a~~~lA~~~~~~g~~~~A~~~l~kaL~~----  210 (235)
                      ++.+..+|..+++.|+|++|+++|+++++++|+       +..     +|.++|.++..+|+|++|+..|+++|++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            578899999999999999999999999999999       544     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHhhchhhcc
Q 026642          211 ---RPLLLRAL----HDLGRYVSMTLQIQS  233 (235)
Q Consensus       211 ---~P~~~~a~----~~l~~~~~~~~~~~~  233 (235)
                         +|++..+|    +++|.++.+.++.++
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eE  120 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAE  120 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHH
Confidence               99999999    999999999887654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.36  E-value=2.1e-11  Score=89.09  Aligned_cols=94  Identities=21%  Similarity=0.294  Sum_probs=87.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ......+++++|+..++++++.+|++..++..+|.++...|++++|+++++++++.+|++..++..+|.++...|++++|
T Consensus        43 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  122 (136)
T 2fo7_A           43 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA  122 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH
Confidence            33344567999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCC
Q 026642          201 KRLFKDILKERPLL  214 (235)
Q Consensus       201 ~~~l~kaL~~~P~~  214 (235)
                      .+.++++++.+|++
T Consensus       123 ~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          123 IEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHSTTC
T ss_pred             HHHHHHHHccCCCC
Confidence            99999999999874

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=5.9e-12  Score=94.86  Aligned_cols=91  Identities=12%  Similarity=0.084  Sum_probs=86.1

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642          142 KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       142 ~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~  218 (235)
                      .+|.+++.+..+|..+...|++++|+++|+++++.+|++   ..++..+|.+|...|++++|++.++++++.+|++..++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            467899999999999999999999999999999999998   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhc
Q 026642          219 HDLGRYVSMTLQIQ  232 (235)
Q Consensus       219 ~~l~~~~~~~~~~~  232 (235)
                      +.+|.++.+.++..
T Consensus       103 ~~~a~~~~~~~~~~  116 (148)
T 2dba_A          103 YRRSQALEKLGRLD  116 (148)
T ss_dssp             HHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHcCCHH
Confidence            99999998877654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.36  E-value=1e-11  Score=107.13  Aligned_cols=94  Identities=13%  Similarity=0.098  Sum_probs=88.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST-AKRLF  204 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~-A~~~l  204 (235)
                      .+++++|+..|+++++.+|+++.+|..+|.++.+.|++++|++.|+++++++|++++++.++|.++...|++++ +.+++
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~  258 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL  258 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999976 56889


Q ss_pred             HHHHHHCCCCHHHHH
Q 026642          205 KDILKERPLLLRALH  219 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~  219 (235)
                      +++++.+|+++.+..
T Consensus       259 ~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          259 SQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHHCTTCHHHHH
T ss_pred             HHHHHhCCCChHHHH
Confidence            999999999976653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.36  E-value=6.5e-12  Score=114.04  Aligned_cols=107  Identities=15%  Similarity=0.091  Sum_probs=94.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .+++++|++.|+++++.+|++++++..+|.++...|++++|+++++++++.+|++..++..+|.+|...|++++|++.|+
T Consensus       289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  368 (537)
T 3fp2_A          289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN  368 (537)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          206 DILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++++.+|++..++..+|.++.+.++..
T Consensus       369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~  395 (537)
T 3fp2_A          369 ETKLKFPTLPEVPTFFAEILTDRGDFD  395 (537)
T ss_dssp             HHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence            999999999888888888888877643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.36  E-value=1.3e-11  Score=113.78  Aligned_cols=112  Identities=13%  Similarity=0.015  Sum_probs=88.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ......+++++|++.|+++++.+|++.++|..++.+|.+.|++++|++.|+++++.+|++..++..+|.+|...|++++|
T Consensus       381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  460 (597)
T 2xpi_A          381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA  460 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence            33444566788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          201 KRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++.|+++++.+|++..+|..++.+|.+.++.+
T Consensus       461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  492 (597)
T 2xpi_A          461 NEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ  492 (597)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence            88888888888888888888888877776643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.36  E-value=3.8e-12  Score=93.16  Aligned_cols=91  Identities=18%  Similarity=0.219  Sum_probs=85.8

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 026642          142 KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL  221 (235)
Q Consensus       142 ~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l  221 (235)
                      .+|+++.++..+|..+...|++++|++.++++++.+|+++.++..+|.++...|++++|++.++++++.+|++..+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            35567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchhhc
Q 026642          222 GRYVSMTLQIQ  232 (235)
Q Consensus       222 ~~~~~~~~~~~  232 (235)
                      |.++.+.++..
T Consensus        87 ~~~~~~~~~~~   97 (131)
T 2vyi_A           87 GLALSSLNKHV   97 (131)
T ss_dssp             HHHHHHTTCHH
T ss_pred             HHHHHHhCCHH
Confidence            99998887754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.36  E-value=9.6e-12  Score=110.62  Aligned_cols=104  Identities=22%  Similarity=0.194  Sum_probs=95.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      .......+++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+++++++++|++..++..+|.+|...|++++
T Consensus        33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  112 (450)
T 2y4t_A           33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE  112 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence            33444566799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCH---HHHHHHHH
Q 026642          200 AKRLFKDILKERPLLL---RALHDLGR  223 (235)
Q Consensus       200 A~~~l~kaL~~~P~~~---~a~~~l~~  223 (235)
                      |++.|+++++.+|++.   .++..++.
T Consensus       113 A~~~~~~~~~~~~~~~~~~~~~~~l~~  139 (450)
T 2y4t_A          113 AEDDFKKVLKSNPSENEEKEAQSQLIK  139 (450)
T ss_dssp             HHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999999998   77766643

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.36  E-value=3.5e-12  Score=99.47  Aligned_cols=88  Identities=18%  Similarity=0.219  Sum_probs=82.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDI------------------EPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l------------------~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      .++.+..+|..+++.|+|++|+..|++++++                  +|.+..++.++|.+|..+|+|++|+..++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4678999999999999999999999999999                  7777899999999999999999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          208 LKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++++|++..+|+.+|.+|...++..+
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~  115 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDE  115 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHH
Confidence            99999999999999999999887543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.35  E-value=3.2e-11  Score=107.25  Aligned_cols=115  Identities=14%  Similarity=-0.018  Sum_probs=97.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHH--------
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV---EWKLLQ--------  187 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~---~a~~~l--------  187 (235)
                      +.......+++++|+..|+++++.+|++..++..+|.+|...|++++|+++|+++++++|++.   .++..+        
T Consensus        66 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  145 (450)
T 2y4t_A           66 RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR  145 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH
Confidence            344445567789999999999999999999999999999999999999999999999999887   766555        


Q ss_pred             ----HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          188 ----ALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       188 ----A~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                          |.++...|++++|+..|+++++.+|++..++..+|.+|.+.++..+
T Consensus       146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  195 (450)
T 2y4t_A          146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRK  195 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHH
Confidence                6668899999999999999999999999999999988888777544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.34  E-value=1.9e-11  Score=88.69  Aligned_cols=90  Identities=21%  Similarity=0.285  Sum_probs=82.8

Q ss_pred             CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 026642          143 EPRN-VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL  221 (235)
Q Consensus       143 ~P~~-~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l  221 (235)
                      +|.+ ..++..+|.++...|++++|++.++++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            4555 789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchhhc
Q 026642          222 GRYVSMTLQIQ  232 (235)
Q Consensus       222 ~~~~~~~~~~~  232 (235)
                      +.++.+.++..
T Consensus        84 a~~~~~~~~~~   94 (125)
T 1na0_A           84 GNAYYKQGDYD   94 (125)
T ss_dssp             HHHHHHTTCHH
T ss_pred             HHHHHHhcCHH
Confidence            99998877643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.34  E-value=2.8e-11  Score=111.58  Aligned_cols=111  Identities=6%  Similarity=-0.103  Sum_probs=83.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHHc
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI------EPNE-VEWKLLQALCYELM  194 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l------~P~~-~~a~~~lA~~~~~~  194 (235)
                      .....+++++|++.|+++++.+|+++.+|..+|.+|.+.|++++|++.|+++++.      +|++ ..+|..+|.+|...
T Consensus       450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  529 (597)
T 2xpi_A          450 QHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL  529 (597)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence            3344556777777777777777777777777777777778888888888777777      5554 67777777778788


Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          195 GKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       195 g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      |++++|++.|+++++.+|++..+|..++.+|.+.++.+
T Consensus       530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  567 (597)
T 2xpi_A          530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG  567 (597)
T ss_dssp             TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence            88888888888877777777777777777777766643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.33  E-value=8.4e-12  Score=92.51  Aligned_cols=86  Identities=16%  Similarity=0.191  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHH
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV---EWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRALHDL  221 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~---~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~~l  221 (235)
                      +++..+|..++..|++++|++.|+++++.+|+++   .+++.+|.++...|++++|++.|+++++.+|++   ..+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4678899999999999999999999999999998   899999999999999999999999999999999   8999999


Q ss_pred             HHHHhhchhhcc
Q 026642          222 GRYVSMTLQIQS  233 (235)
Q Consensus       222 ~~~~~~~~~~~~  233 (235)
                      |.++.+.++..+
T Consensus        83 a~~~~~~g~~~~   94 (129)
T 2xev_A           83 GLSQYGEGKNTE   94 (129)
T ss_dssp             HHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHH
Confidence            999998877543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.32  E-value=8.8e-12  Score=106.80  Aligned_cols=90  Identities=19%  Similarity=0.098  Sum_probs=86.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 026642          144 PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR  223 (235)
Q Consensus       144 P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~  223 (235)
                      |++++++..+|..+...|++++|+..|+++++++|+++.++.++|.+|..+|++++|++.|+++++++|++..+++++|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchhhcc
Q 026642          224 YVSMTLQIQS  233 (235)
Q Consensus       224 ~~~~~~~~~~  233 (235)
                      +|.+.++..+
T Consensus        81 ~~~~~g~~~~   90 (281)
T 2c2l_A           81 CQLEMESYDE   90 (281)
T ss_dssp             HHHHTTCHHH
T ss_pred             HHHHcCCHHH
Confidence            9998877543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.31  E-value=6.4e-13  Score=121.84  Aligned_cols=105  Identities=14%  Similarity=0.100  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---------------VEWKLLQALCYEL  193 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---------------~~a~~~lA~~~~~  193 (235)
                      +++|++.|+.+++.+|+++.+|..+|..+++.|+|++|+.+|+++++++|++               ..+|+++|.+|..
T Consensus       250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~  329 (457)
T 1kt0_A          250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK  329 (457)
T ss_dssp             EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888888888899999999999999999999999999999999999998               7999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          194 MGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       194 ~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +|+|++|+..|+++++++|++..+|+++|.+|.+.++.++
T Consensus       330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~  369 (457)
T 1kt0_A          330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES  369 (457)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHH
Confidence            9999999999999999999999999999999998887543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.31  E-value=1.5e-12  Score=104.79  Aligned_cols=92  Identities=18%  Similarity=0.112  Sum_probs=84.4

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHH
Q 026642          141 EKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV----------------EWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       141 ~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~----------------~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      +..+..++.+..+|..++..|+|++|+++|++++++.|+++                .++..+|.+|..+|++++|+..+
T Consensus        32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  111 (198)
T 2fbn_A           32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA  111 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            33345578899999999999999999999999999999987                89999999999999999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          205 KDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +++++.+|++..+++++|.+|.+.++..
T Consensus       112 ~~al~~~p~~~~~~~~lg~~~~~~~~~~  139 (198)
T 2fbn_A          112 SKVLKIDKNNVKALYKLGVANMYFGFLE  139 (198)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcccHH
Confidence            9999999999999999999998887754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.31  E-value=1.3e-11  Score=106.28  Aligned_cols=95  Identities=11%  Similarity=0.085  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          130 SEVEEMFEKLLE-KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE-WKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       130 ~eA~~~~e~aL~-~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~-a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ++|+..|+++++ .+|++..+|..+|.++...|++++|++.|+++++++|+++. +|..+|.++...|++++|++.|+++
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            555555555555 45555555555555555555555555555555555555554 5555555555555555555555555


Q ss_pred             HHHCCCCHHHHHHHHHH
Q 026642          208 LKERPLLLRALHDLGRY  224 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~  224 (235)
                      ++.+|.+..+|.+.+.+
T Consensus       161 ~~~~p~~~~~~~~~a~~  177 (308)
T 2ond_A          161 REDARTRHHVYVTAALM  177 (308)
T ss_dssp             HTSTTCCTHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHH
Confidence            55555555555544444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.30  E-value=9.4e-12  Score=91.23  Aligned_cols=88  Identities=13%  Similarity=0.153  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------HHH
Q 026642          145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL-------LRA  217 (235)
Q Consensus       145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~-------~~a  217 (235)
                      ..++++..+|..+...|++++|+.+++++++.+|+++.++..+|.+|...|++++|+..++++++.+|++       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3468899999999999999999999999999999999999999999999999999999999999999887       899


Q ss_pred             HHHHHHHHhhchhhc
Q 026642          218 LHDLGRYVSMTLQIQ  232 (235)
Q Consensus       218 ~~~l~~~~~~~~~~~  232 (235)
                      ++++|.++.+.++..
T Consensus        82 ~~~la~~~~~~~~~~   96 (131)
T 1elr_A           82 YARIGNSYFKEEKYK   96 (131)
T ss_dssp             HHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhccHH
Confidence            999999998887754

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.29  E-value=3.9e-11  Score=92.01  Aligned_cols=88  Identities=11%  Similarity=0.096  Sum_probs=83.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYV  225 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~  225 (235)
                      .++.+..+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|++.++++++.+|++..+++++|.++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchhhcc
Q 026642          226 SMTLQIQS  233 (235)
Q Consensus       226 ~~~~~~~~  233 (235)
                      .+.++..+
T Consensus        92 ~~~~~~~~   99 (166)
T 1a17_A           92 MALGKFRA   99 (166)
T ss_dssp             HHTTCHHH
T ss_pred             HHhccHHH
Confidence            88877543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.29  E-value=3.7e-11  Score=103.48  Aligned_cols=114  Identities=16%  Similarity=0.052  Sum_probs=96.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cC
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKEPRNVE-ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL-MG  195 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~-a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~-~g  195 (235)
                      .+..-....+++++|++.|+++++.+|++.+ +|..+|..+.+.|++++|+..|+++++.+|.+..+|...|.+... .|
T Consensus       104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~  183 (308)
T 2ond_A          104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK  183 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence            3444445567789999999999999999987 999999999999999999999999999999888888777766543 69


Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          196 KLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      ++++|++.|+++++.+|++..+|.+++.++.+.++.
T Consensus       184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~  219 (308)
T 2ond_A          184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED  219 (308)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence            999999999999999999999999999888776654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.28  E-value=3.2e-11  Score=109.42  Aligned_cols=110  Identities=10%  Similarity=0.109  Sum_probs=103.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      .....+++++|++.|+++++.+|+ .+++..+|.++...|++++|+++++++++.+|+++.++..+|.+|...|++++|+
T Consensus       252 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  330 (537)
T 3fp2_A          252 FHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK  330 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            334456789999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          202 RLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       202 ~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +.|+++++.+|++..++.++|.++.+.++..
T Consensus       331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~  361 (537)
T 3fp2_A          331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFT  361 (537)
T ss_dssp             HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999998887754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.25  E-value=1.8e-11  Score=100.99  Aligned_cols=114  Identities=19%  Similarity=0.188  Sum_probs=100.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEK--------EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI--------EPNEVE  182 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~--------~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l--------~P~~~~  182 (235)
                      +.......+++++|+..|+++++.        +|....++..+|.+|...|++++|++++++++++        +|....
T Consensus        49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  128 (283)
T 3edt_B           49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK  128 (283)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            334444566799999999999987        4677889999999999999999999999999998        567788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHhhchhhc
Q 026642          183 WKLLQALCYELMGKLSTAKRLFKDILKE--------RPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~--------~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++..+|.+|...|++++|++.|+++++.        +|....++.++|.+|.+.++.+
T Consensus       129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  186 (283)
T 3edt_B          129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ  186 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999999        7777899999999998887754

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.25  E-value=3e-11  Score=108.66  Aligned_cols=103  Identities=16%  Similarity=0.059  Sum_probs=55.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cCCHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE------WKLLQALCYEL---MGKLS  198 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~------a~~~lA~~~~~---~g~~~  198 (235)
                      ++++|+..|+++++.+|++++++..+|.++...|++++|+.+++++++.+|++..      ++..+|.++..   .|+++
T Consensus       353 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  432 (514)
T 2gw1_A          353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI  432 (514)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred             CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence            3455555555555555555555555555555555555555555555555554433      55555555555   55555


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +|+..|+++++.+|++..++..+|.++.+.++
T Consensus       433 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  464 (514)
T 2gw1_A          433 EATNLLEKASKLDPRSEQAKIGLAQMKLQQED  464 (514)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence            55555555555555555555555555555444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.25  E-value=3.6e-11  Score=103.04  Aligned_cols=110  Identities=7%  Similarity=-0.088  Sum_probs=95.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRN------VEALKVVMQGNMRR-GRNKEALEFVKRLIDIEPNE------VEWKLLQAL  189 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~------~~a~~~la~~~~~~-g~~~eAi~~l~kai~l~P~~------~~a~~~lA~  189 (235)
                      ....+++++|+..|+++++..+..      +.++..+|.+|... |++++|+.+|++++++.|++      ..++..+|.
T Consensus        87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~  166 (292)
T 1qqe_A           87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD  166 (292)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            344567999999999999987643      57899999999996 99999999999999998864      567889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHhhchhhc
Q 026642          190 CYELMGKLSTAKRLFKDILKERPLLLR-------ALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       190 ~~~~~g~~~~A~~~l~kaL~~~P~~~~-------a~~~l~~~~~~~~~~~  232 (235)
                      +|..+|++++|+..|+++++..|++..       ++.++|.++...++..
T Consensus       167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  216 (292)
T 1qqe_A          167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV  216 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999998732       6789999988876643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.25  E-value=3.3e-12  Score=92.12  Aligned_cols=86  Identities=9%  Similarity=0.115  Sum_probs=78.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcC
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYELMG  195 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~~g  195 (235)
                      .....+++++|++.|+++++.+|+++.+|..+|.++...|++++|+++++++++++|++      ..+++.+|.++..+|
T Consensus        13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~   92 (111)
T 2l6j_A           13 SLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVG   92 (111)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            33445679999999999999999999999999999999999999999999999999999      899999999999999


Q ss_pred             CHHHHHHHHHHH
Q 026642          196 KLSTAKRLFKDI  207 (235)
Q Consensus       196 ~~~~A~~~l~ka  207 (235)
                      ++++|+..++++
T Consensus        93 ~~~~a~~~~~~~  104 (111)
T 2l6j_A           93 SVQIPVVEVDEL  104 (111)
T ss_dssp             CCCCCSSSSSSC
T ss_pred             hHhhhHhHHHHh
Confidence            998888776553

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.24  E-value=9.2e-11  Score=83.50  Aligned_cols=68  Identities=15%  Similarity=0.207  Sum_probs=51.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642          151 KVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE-WKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       151 ~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~-a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~  218 (235)
                      ..+|..+...|++++|++.|+++++.+|+++. +++.+|.+|..+|++++|++.|+++++.+|++..++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            45677777777777777777777777777777 777777777777777777777777777777776655

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.21  E-value=5.5e-11  Score=106.92  Aligned_cols=100  Identities=12%  Similarity=0.050  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ++++|+..|+++++.+|++..++..+|.++...|++++|+++++++++.+|+++.++..+|.++...|++++|++.|+++
T Consensus       319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  398 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA  398 (514)
T ss_dssp             CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHCCCCHH------HHHHHHHHHhh
Q 026642          208 LKERPLLLR------ALHDLGRYVSM  227 (235)
Q Consensus       208 L~~~P~~~~------a~~~l~~~~~~  227 (235)
                      ++.+|++..      ++..+|.++.+
T Consensus       399 ~~~~~~~~~~~~~~~~~~~l~~~~~~  424 (514)
T 2gw1_A          399 IELENKLDGIYVGIAPLVGKATLLTR  424 (514)
T ss_dssp             HHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred             HHhhhccchHHHHHHHHHHHHHHHhh
Confidence            554444422      44444444444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.20  E-value=5.2e-10  Score=93.67  Aligned_cols=96  Identities=10%  Similarity=0.035  Sum_probs=69.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMR----RGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL----MGKL  197 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~----~g~~  197 (235)
                      .+++++|++.|+++++.+  +++++..+|.+|..    .+++++|+++|+++++.+  ++.+++.+|.+|..    .|++
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~  130 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDF  130 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCH
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCH
Confidence            556677777777777764  67777777777777    777777777777777763  67777777777777    7777


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          198 STAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      ++|++.|+++++.+  +..++.+++.+|..
T Consensus       131 ~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A          131 KKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence            77777777777665  56677777777766

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.19  E-value=4e-11  Score=85.44  Aligned_cols=83  Identities=12%  Similarity=0.134  Sum_probs=75.3

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVE-ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR  202 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~-a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~  202 (235)
                      ...+++++|++.|+++++.+|+++. ++..+|.+|...|++++|+++|+++++++|++..++..        +.+++|..
T Consensus        11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~   82 (99)
T 2kc7_A           11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILN   82 (99)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHH
Confidence            3456699999999999999999999 99999999999999999999999999999999988754        66788899


Q ss_pred             HHHHHHHHCCCC
Q 026642          203 LFKDILKERPLL  214 (235)
Q Consensus       203 ~l~kaL~~~P~~  214 (235)
                      .|++++..+|++
T Consensus        83 ~~~~~~~~~p~~   94 (99)
T 2kc7_A           83 FYNKDMYNQLEH   94 (99)
T ss_dssp             HHCCTTHHHHCC
T ss_pred             HHHHHhccCccc
Confidence            999998888876

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.19  E-value=7.5e-11  Score=97.20  Aligned_cols=92  Identities=26%  Similarity=0.339  Sum_probs=82.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEK--------EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI--------EPNEVE  182 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~--------~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l--------~P~~~~  182 (235)
                      +..-....+++++|++.|+++++.        +|....++..+|.++...|++++|++++++++++        +|....
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            334444567789999999999988        5778899999999999999999999999999999        777788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642          183 WKLLQALCYELMGKLSTAKRLFKDILKE  210 (235)
Q Consensus       183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~  210 (235)
                      ++..+|.+|..+|++++|++.|+++++.
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999986

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.18  E-value=6e-11  Score=101.67  Aligned_cols=108  Identities=9%  Similarity=-0.026  Sum_probs=93.6

Q ss_pred             hcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPR------NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYE  192 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~------~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~  192 (235)
                      ..+++++|++.|+++++..+.      .+.++..+|.+|...|++++|+.+|++++++.+..      ..++..+|.+|.
T Consensus        49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~  128 (292)
T 1qqe_A           49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (292)
T ss_dssp             HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            456789999999999987432      26799999999999999999999999999998753      568889999999


Q ss_pred             Hc-CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhchhhc
Q 026642          193 LM-GKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       193 ~~-g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~~~~~  232 (235)
                      .. |++++|+..|++++++.|++      ..++.++|.++.+.++..
T Consensus       129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  175 (292)
T 1qqe_A          129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (292)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence            96 99999999999999998865      567899999998887654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.17  E-value=7.5e-10  Score=99.24  Aligned_cols=109  Identities=14%  Similarity=0.003  Sum_probs=88.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEK---------EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE--------PNEVEW  183 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~---------~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~--------P~~~~a  183 (235)
                      .-....+++++|++.|+++++.         +|....+|.++|.+|..+|++++|+.++++++++.        ++.+..
T Consensus        59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~  138 (472)
T 4g1t_A           59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL  138 (472)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence            3344556789999999998875         67788889999999999999999999999998863        356788


Q ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          184 KLLQALCYELM--GKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       184 ~~~lA~~~~~~--g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      +..+|.++...  ++|++|+++|+++++.+|+++.++.+++.++.+.+
T Consensus       139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~  186 (472)
T 4g1t_A          139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD  186 (472)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            88888777665  46899999999999999999999988888765543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.16  E-value=1.7e-10  Score=91.16  Aligned_cols=80  Identities=20%  Similarity=0.188  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE--VEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~--~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      .+|++.++++++.+|++++++..+|.++...|++++|+..|+++++++|+.  ..++..+|.++..+|++++|+..|+++
T Consensus        91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A           91 SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            357999999999999999999999999999999999999999999999986  669999999999999999999999998


Q ss_pred             HH
Q 026642          208 LK  209 (235)
Q Consensus       208 L~  209 (235)
                      |.
T Consensus       171 l~  172 (176)
T 2r5s_A          171 LY  172 (176)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.16  E-value=1.8e-10  Score=101.31  Aligned_cols=110  Identities=15%  Similarity=0.105  Sum_probs=99.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNV----EALKVVMQGNMRRGRNKEALEFVKRLIDI------EPNEVEWKLLQALC  190 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~----~a~~~la~~~~~~g~~~eAi~~l~kai~l------~P~~~~a~~~lA~~  190 (235)
                      ......+++++|++.|+++++.+|++.    .++..+|.+|...|++++|++++++++++      ++....++..+|.+
T Consensus        56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  135 (411)
T 4a1s_A           56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT  135 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence            344556789999999999999999997    58999999999999999999999999998      57778999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHhhchh
Q 026642          191 YELMGKLSTAKRLFKDILKE------RPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       191 ~~~~g~~~~A~~~l~kaL~~------~P~~~~a~~~l~~~~~~~~~  230 (235)
                      |...|++++|++.|+++++.      .+....++.++|.+|...++
T Consensus       136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            99999999999999999998      56668899999999988876

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=3.7e-10  Score=101.21  Aligned_cols=99  Identities=13%  Similarity=0.093  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMR----RGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      ++|++.|+++++.+|++..++..+|..+..    .|++++|+++++++++.+|++..++..+|.+|...|++++|++.|+
T Consensus       192 ~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  271 (472)
T 4g1t_A          192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK  271 (472)
T ss_dssp             CCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            445555555555555555555555544433    3566778888888888888888888889999999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhc
Q 026642          206 DILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ++++.+|++..++.++|.+|...
T Consensus       272 ~al~~~p~~~~~~~~lg~~y~~~  294 (472)
T 4g1t_A          272 KALEYIPNNAYLHCQIGCCYRAK  294 (472)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCChHHHHHHHHHHHHHH
Confidence            99999999999999998887654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.15  E-value=3.4e-10  Score=96.61  Aligned_cols=108  Identities=7%  Similarity=0.027  Sum_probs=92.7

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRN------VEALKVVMQGNMRRGRNKEALEFVKRLI---DIEPNEV----EWKLLQALCY  191 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~------~~a~~~la~~~~~~g~~~eAi~~l~kai---~l~P~~~----~a~~~lA~~~  191 (235)
                      ..+++++|+..++++++..++.      ..++..+|.+|...|++++|+.+|++++   +..+++.    .+++++|.+|
T Consensus       127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y  206 (293)
T 2qfc_A          127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL  206 (293)
T ss_dssp             TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence            3457899999999999865444      6799999999999999999999999999   5566643    6889999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhchhhc
Q 026642          192 ELMGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       192 ~~~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~~~~~  232 (235)
                      ..+|+|++|++.++++++..++.      ..+++++|.+|.+.++..
T Consensus       207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~  253 (293)
T 2qfc_A          207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEE  253 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcH
Confidence            99999999999999999876431      788999999999887654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.15  E-value=7.2e-10  Score=76.84  Aligned_cols=74  Identities=24%  Similarity=0.319  Sum_probs=68.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG  195 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g  195 (235)
                      .....+++++|+..|+++++.+|++..++..+|.++...|++++|+++++++++++|++..++..+|.++..+|
T Consensus        18 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            33445679999999999999999999999999999999999999999999999999999999999999998765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.15  E-value=4.5e-10  Score=106.09  Aligned_cols=99  Identities=10%  Similarity=0.049  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CH
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR----------NKEALEFVKRLIDIEPNEVEWKLLQALCYELMG--KL  197 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~----------~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g--~~  197 (235)
                      ++|++.++++++.+|++..+|...+.++...|+          +++|+++++++++.+|++..+|..++.++...|  ++
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~  125 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  125 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence            444555555555555555555555555555444          555555555555555555555555555555555  44


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          198 STAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ++|++.++++++.||++..+|..++.++.+.
T Consensus       126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l  156 (567)
T 1dce_A          126 ARELELCARFLEADERNFHCWDYRRFVAAQA  156 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence            5555555555555555555555554444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.14  E-value=2.8e-10  Score=82.48  Aligned_cols=72  Identities=11%  Similarity=-0.007  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          143 EPRNVEALKVVMQGNMRRGR---NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       143 ~P~~~~a~~~la~~~~~~g~---~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      +|+|++.+..+|.+++..++   .++|...+++++++||+++.+++.+|.+++..|+|++|+..|+++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            68999999999999987666   7999999999999999999999999999999999999999999999999985

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.14  E-value=3.7e-10  Score=96.80  Aligned_cols=91  Identities=15%  Similarity=0.113  Sum_probs=80.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH------------------
Q 026642          143 EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF------------------  204 (235)
Q Consensus       143 ~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l------------------  204 (235)
                      -|++.+++..+|..+.+.|++++|+..|+++++++|+++.+++.+|.+|...|++++|+..|                  
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999876554                  


Q ss_pred             ----------------HHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          205 ----------------KDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       205 ----------------~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                                      +++++.+|++..+++++|.++.+.++.++
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~  237 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEE  237 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHH
Confidence                            45577788888888888888887776543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.13  E-value=2.5e-11  Score=89.80  Aligned_cols=75  Identities=12%  Similarity=0.067  Sum_probs=66.4

Q ss_pred             HcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          159 RRGRNKEALEFVKRLIDI---EPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       159 ~~g~~~eAi~~l~kai~l---~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ..|++++|+.+|++++++   +|+++.+++.+|.+|..+|++++|++.|+++++.+|++..+++++|.++.+.++.++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence            468999999999999999   689999999999999999999999999999999999999999999999998887543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.12  E-value=9.4e-10  Score=96.43  Aligned_cols=100  Identities=8%  Similarity=-0.072  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHc---CCHHHH
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG--RNKEALEFVKRLIDIEPNEVEWKLLQALCY----ELM---GKLSTA  200 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g--~~~eAi~~l~kai~l~P~~~~a~~~lA~~~----~~~---g~~~~A  200 (235)
                      ++|++.++++|+.+|++..+|...+.++...|  +++++++++++++..+|++..+|..++.++    ...   ++++++
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E  129 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE  129 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence            55666666666666666666666666666666  666666666666666666666666666665    444   556666


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          201 KRLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      ++.++++++.+|++..+|...+.++.+.+
T Consensus       130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~  158 (306)
T 3dra_A          130 FDILEAMLSSDPKNHHVWSYRKWLVDTFD  158 (306)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            66666666666666666666655555443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.10  E-value=3.3e-09  Score=88.70  Aligned_cols=96  Identities=10%  Similarity=0.056  Sum_probs=81.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMR----RGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL----MGKL  197 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~----~g~~  197 (235)
                      .+++++|++.|+++++.  ++++++..+|.+|..    .|++++|+++|+++++.+  ++.+++.+|.+|..    .+++
T Consensus        91 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~  166 (273)
T 1ouv_A           91 SQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDL  166 (273)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             ccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCH
Confidence            66788888899888887  478889999999988    889999999999988876  67888888988888    8899


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          198 STAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      ++|++.|+++++.  ++..+++.+|.+|..
T Consensus       167 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  194 (273)
T 1ouv_A          167 KKALASYDKACDL--KDSPGCFNAGNMYHH  194 (273)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            9999999988877  467888888888887

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.10  E-value=1.1e-09  Score=86.54  Aligned_cols=98  Identities=9%  Similarity=0.033  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG---RNKEALEFVKRLIDIE-P-NEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g---~~~eAi~~l~kai~l~-P-~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      ...+++.|++.++.++.+.++.+.+|+.+.+.+   +.++++..++.+++.+ | +..++++++|..|+.+|+|++|+++
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            467788999999999999999999999999988   6779999999999999 7 5689999999999999999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHh
Q 026642          204 FKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      ++++|+.+|+|..+......+..
T Consensus        94 ~~~lL~ieP~n~QA~~Lk~~ie~  116 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELERLIDK  116 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHH
Confidence            99999999999777766555543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.10  E-value=2.1e-10  Score=96.15  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=99.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEK--------EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE--------PNEVE  182 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~--------~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~--------P~~~~  182 (235)
                      +.......+++++|+..|+++++.        +|....++..+|.+|...|++++|++++++++++.        |....
T Consensus        75 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (311)
T 3nf1_A           75 LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK  154 (311)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            334445567899999999999987        46778899999999999999999999999999984        55678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHhhchhhc
Q 026642          183 WKLLQALCYELMGKLSTAKRLFKDILKE--------RPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~--------~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++..+|.++...|++++|++.|+++++.        +|....++..++.++.+.++..
T Consensus       155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  212 (311)
T 3nf1_A          155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFK  212 (311)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence            8999999999999999999999999998        7777889999999998887754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.09  E-value=2.9e-10  Score=95.33  Aligned_cols=113  Identities=18%  Similarity=0.173  Sum_probs=98.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEK--------EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI--------EPNEVEW  183 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~--------~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l--------~P~~~~a  183 (235)
                      .......+++++|+..|+++++.        +|....++..+|.+|...|++++|+.++++++++        +|....+
T Consensus        34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  113 (311)
T 3nf1_A           34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT  113 (311)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence            33444456789999999999984        7788899999999999999999999999999988        3556788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHhhchhhc
Q 026642          184 KLLQALCYELMGKLSTAKRLFKDILKER--------PLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       184 ~~~lA~~~~~~g~~~~A~~~l~kaL~~~--------P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +..+|.+|...|++++|++.|+++++..        |....++.++|.++...++..
T Consensus       114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  170 (311)
T 3nf1_A          114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE  170 (311)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999884        555888999999998887644

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.07  E-value=7e-10  Score=93.10  Aligned_cols=107  Identities=14%  Similarity=0.064  Sum_probs=94.4

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRN----VEALKVVMQGNMRRGRNKEALEFVKRLIDI------EPNEVEWKLLQALCYEL  193 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~----~~a~~~la~~~~~~g~~~eAi~~l~kai~l------~P~~~~a~~~lA~~~~~  193 (235)
                      ...+++++|+..|+++++.+|++    ..++..+|.++...|++++|++++++++++      .+....++..+|.+|..
T Consensus        16 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~   95 (338)
T 3ro2_A           16 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV   95 (338)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence            44567999999999999999999    478889999999999999999999999987      45567889999999999


Q ss_pred             cCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhchh
Q 026642          194 MGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMTLQ  230 (235)
Q Consensus       194 ~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~~~  230 (235)
                      .|++++|++.++++++..+..      ..++..+|.++...++
T Consensus        96 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           96 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            999999999999999876644      4588899999888776

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.07  E-value=3.7e-10  Score=96.41  Aligned_cols=105  Identities=10%  Similarity=0.055  Sum_probs=87.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPR--N----VEALKVVMQGNMRRGRNKEALEFVKRLIDI-------EPNEVEWKLLQALCYE  192 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~--~----~~a~~~la~~~~~~g~~~eAi~~l~kai~l-------~P~~~~a~~~lA~~~~  192 (235)
                      .+++++|+..|+++++..+.  +    ..++..+|.+|...|++++|+.+|+++++.       .+....+++++|.+|.
T Consensus       128 ~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~  207 (293)
T 3u3w_A          128 KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             SSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            34789999999999986433  2    347999999999999999999999999952       1223467889999999


Q ss_pred             HcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhchh
Q 026642          193 LMGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMTLQ  230 (235)
Q Consensus       193 ~~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~~~  230 (235)
                      .+|+|++|++.++++++..+..      ..+++++|.+|.+.++
T Consensus       208 ~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~  251 (293)
T 3u3w_A          208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred             HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999876544      7899999999998873

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.06  E-value=1.1e-09  Score=95.29  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=97.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNV----EALKVVMQGNMRRGRNKEALEFVKRLIDI------EPNEVEWKLLQAL  189 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~----~a~~~la~~~~~~g~~~eAi~~l~kai~l------~P~~~~a~~~lA~  189 (235)
                      .......+++++|+..|+++++.+|++.    .++..+|.++...|++++|+.++++++++      .|....++..+|.
T Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~   95 (406)
T 3sf4_A           16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   95 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            3444556779999999999999999994    68999999999999999999999999987      3455788999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhchh
Q 026642          190 CYELMGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMTLQ  230 (235)
Q Consensus       190 ~~~~~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~~~  230 (235)
                      +|..+|++++|+..++++++..+..      ..++.++|.+|...++
T Consensus        96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            9999999999999999999987754      5688999999988776

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.06  E-value=3.4e-10  Score=101.18  Aligned_cols=87  Identities=15%  Similarity=0.091  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLID----------------IEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKE  210 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~----------------l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~  210 (235)
                      ++.|..+|..+++.|+|++|+++|+++++                ++|.+..+++++|.+|..+|++++|++++++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            57799999999999999999999999999                78888999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhchhhcc
Q 026642          211 RPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       211 ~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +|++..+++++|.+|.+.++.++
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~e  325 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQ  325 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHH
Confidence            99999999999999998887543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.06  E-value=1.1e-10  Score=102.91  Aligned_cols=91  Identities=16%  Similarity=0.107  Sum_probs=84.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          143 EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-----------------EWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       143 ~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-----------------~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      .++.++.+..+|..+++.|+|++|+.+|+++++++|++.                 .+++++|.+|..+|+|++|+..|+
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345578899999999999999999999999999999987                 489999999999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          206 DILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++++++|++..+|+++|.+|...++..+
T Consensus       255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~  282 (338)
T 2if4_A          255 IVLTEEEKNPKALFRRGKAKAELGQMDS  282 (338)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999998887543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.06  E-value=1.2e-09  Score=103.15  Aligned_cols=100  Identities=8%  Similarity=0.007  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG--RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG-KLSTAKRLFK  205 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g--~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g-~~~~A~~~l~  205 (235)
                      ++++++.++++++.+|++..+|...+.++.+.|  ++++|++++++++++||.+..+|..++.++...| .+++++++++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~  168 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence            789999999999999999999999999999999  7799999999999999999999999999999999 9999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhc
Q 026642          206 DILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ++++.+|.|..+|+.++.++.+.
T Consensus       169 ~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          169 SLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             TTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCccHHHHHHHHHHhh
Confidence            99999999999999999998774

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.06  E-value=5.6e-10  Score=98.29  Aligned_cols=112  Identities=13%  Similarity=0.066  Sum_probs=93.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEP-------RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQ  187 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P-------~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~l  187 (235)
                      .-....+++++|+..++++++..+       ..+.++..+|.+|...|++++|++++++++++.+..      ..++.++
T Consensus       151 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  230 (383)
T 3ulq_A          151 ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI  230 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            334446678999999999998733       335689999999999999999999999999875533      2588899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH-----HC-CCCHHHHHHHHHHHhhchhhc
Q 026642          188 ALCYELMGKLSTAKRLFKDILK-----ER-PLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       188 A~~~~~~g~~~~A~~~l~kaL~-----~~-P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      |.+|..+|++++|++.|+++++     .+ |....++.++|.++.+.++..
T Consensus       231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  281 (383)
T 3ulq_A          231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKID  281 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999999     56 777999999999998887754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.04  E-value=5.9e-10  Score=83.86  Aligned_cols=107  Identities=16%  Similarity=0.011  Sum_probs=87.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNV------EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYEL  193 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~------~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~  193 (235)
                      .+++++|++.++++++..++..      .++..+|.++...|++++|++++++++++.+..      ..++..+|.++..
T Consensus        22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (164)
T 3ro3_A           22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  101 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            4568899999999888644322      488999999999999999999999999876543      5678899999999


Q ss_pred             cCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhchhhc
Q 026642          194 MGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       194 ~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~~~~~  232 (235)
                      .|++++|++.++++++..+..      ..++..++.++...++..
T Consensus       102 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  146 (164)
T 3ro3_A          102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD  146 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence            999999999999999874322      677888999988877654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.03  E-value=1.3e-09  Score=89.19  Aligned_cols=98  Identities=14%  Similarity=0.039  Sum_probs=87.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMR----RGRNKEALEFVKRLIDIEP--NEVEWKLLQALCYEL----MGKL  197 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----~g~~~eAi~~l~kai~l~P--~~~~a~~~lA~~~~~----~g~~  197 (235)
                      ++++|+++|+++++  +.+++++..||.+|..    .+++++|+++|+++++.++  +++.+++.+|.+|..    .+++
T Consensus        68 ~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~  145 (212)
T 3rjv_A           68 DYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD  145 (212)
T ss_dssp             CHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred             CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence            68899999999965  4789999999999988    8899999999999999887  358999999999999    8899


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          198 STAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ++|+.+|+++++. +++..+++++|.+|...
T Consensus       146 ~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g  175 (212)
T 3rjv_A          146 VKASEYFKGSSSL-SRTGYAEYWAGMMFQQG  175 (212)
T ss_dssp             HHHHHHHHHHHHT-SCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHHHHHHcC
Confidence            9999999999988 77788999999998764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.03  E-value=3.4e-09  Score=92.81  Aligned_cols=104  Identities=13%  Similarity=0.039  Sum_probs=99.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------HH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNK--EALEFVKRLIDIEPNEVEWKLLQALCYELMGK------LS  198 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~--eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~------~~  198 (235)
                      ..++++++.++++++.+|+|..+|...+.+....|+++  +++++++++++.||.|..+|..++.++...|+      ++
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~  203 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTID  203 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence            56899999999999999999999999999999999999  99999999999999999999999999999998      99


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      ++++.+++++..+|+|..+|+.++.++.+.+.
T Consensus       204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence            99999999999999999999999999877665

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.02  E-value=9.8e-10  Score=86.99  Aligned_cols=112  Identities=15%  Similarity=0.059  Sum_probs=90.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCC----HHHHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLE------KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI---EPNE----VEWKLLQ  187 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~------~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l---~P~~----~~a~~~l  187 (235)
                      ......+++++|++.++++++      ..+....++..+|.++...|++++|++++++++++   .+++    ..++..+
T Consensus        34 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  113 (203)
T 3gw4_A           34 YVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEV  113 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence            333445678999999999998      45566788999999999999999999999999998   4433    4678889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHhhchhhc
Q 026642          188 ALCYELMGKLSTAKRLFKDILKERP--LL----LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       188 A~~~~~~g~~~~A~~~l~kaL~~~P--~~----~~a~~~l~~~~~~~~~~~  232 (235)
                      |.++...|++++|+..++++++..+  ++    ..++.++|.++.+.++..
T Consensus       114 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  164 (203)
T 3gw4_A          114 ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL  164 (203)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence            9999999999999999999987533  22    455688999888877654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.02  E-value=1e-08  Score=87.27  Aligned_cols=111  Identities=14%  Similarity=0.043  Sum_probs=93.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNV------EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALC  190 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~------~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~  190 (235)
                      ....+++++|++.++++++..+...      ..+..+|..+...|++++|+.+++++++..+..      ..++..+|.+
T Consensus        85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~  164 (293)
T 2qfc_A           85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI  164 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            3456779999999999999887655      346678888999999999999999999876543      5689999999


Q ss_pred             HHHcCCHHHHHHHHHHHH---HHCCCC----HHHHHHHHHHHhhchhhcc
Q 026642          191 YELMGKLSTAKRLFKDIL---KERPLL----LRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       191 ~~~~g~~~~A~~~l~kaL---~~~P~~----~~a~~~l~~~~~~~~~~~~  233 (235)
                      |..+|++++|+..|++++   +..|++    ..++.++|.+|.+.++.++
T Consensus       165 y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~  214 (293)
T 2qfc_A          165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE  214 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHH
Confidence            999999999999999999   667765    3689999999998877543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.01  E-value=5.7e-09  Score=76.44  Aligned_cols=80  Identities=15%  Similarity=0.044  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIE-------PNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~-------P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~  218 (235)
                      +++-...+|..+++.|+|+.|+.+|+++++..       ...+..+..+|.+|+.+|++++|+..++++++++|++..++
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            46677899999999999999999999999863       34578899999999999999999999999999999999998


Q ss_pred             HHHHHHH
Q 026642          219 HDLGRYV  225 (235)
Q Consensus       219 ~~l~~~~  225 (235)
                      .++..+-
T Consensus        84 ~n~~~~~   90 (104)
T 2v5f_A           84 GNLKYFE   90 (104)
T ss_dssp             HHHHHHH
T ss_pred             hhHHHHH
Confidence            8887443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.00  E-value=9.3e-11  Score=108.20  Aligned_cols=88  Identities=11%  Similarity=0.096  Sum_probs=82.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYV  225 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~  225 (235)
                      .++++..+|..+.+.|++++|+++|+++++++|+++.++..+|.+|..+|++++|++.|+++++++|++..+++++|.+|
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchhhcc
Q 026642          226 SMTLQIQS  233 (235)
Q Consensus       226 ~~~~~~~~  233 (235)
                      .+.++.++
T Consensus        85 ~~~g~~~e   92 (477)
T 1wao_1           85 MALGKFRA   92 (477)
T ss_dssp             HHHTCHHH
T ss_pred             HHcCCHHH
Confidence            98877543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.00  E-value=2.7e-09  Score=98.30  Aligned_cols=101  Identities=13%  Similarity=0.039  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMR-------RGRNK-------EALEFVKRLID-IEPNEVEWKLLQALCYELM  194 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~-------~g~~~-------eAi~~l~kai~-l~P~~~~a~~~lA~~~~~~  194 (235)
                      .+++..|+++++.+|+++++|..+|..+..       .|+++       +|+..|+++++ ++|++...|..+|.++...
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            477889999999999999999999999987       79987       99999999997 8999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHhhchh
Q 026642          195 GKLSTAKRLFKDILKERPLLL-RALHDLGRYVSMTLQ  230 (235)
Q Consensus       195 g~~~~A~~~l~kaL~~~P~~~-~a~~~l~~~~~~~~~  230 (235)
                      |++++|.+.|+++++.+|++. .+|.+++.++.+.++
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  371 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG  371 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence            999999999999999999985 689888888766554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.99  E-value=6.7e-09  Score=92.59  Aligned_cols=102  Identities=9%  Similarity=0.001  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG-RNKEALEFVKRLIDIEPNEVEWKLLQALCYELM-G-KLSTAKRLFK  205 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g-~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~-g-~~~~A~~~l~  205 (235)
                      .++|++.++++|+.+|++..+|...+.++...| .++++++++++++..+|++..+|..++.++... + +++++++.++
T Consensus        70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~  149 (349)
T 3q7a_A           70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH  149 (349)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            478999999999999999999999999999999 599999999999999999999999999999998 8 9999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          206 DILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      ++++.+|+|..+|..++.++.+.+.
T Consensus       150 k~L~~dpkNy~AW~~R~wvl~~l~~  174 (349)
T 3q7a_A          150 GSLLPDPKNYHTWAYLHWLYSHFST  174 (349)
T ss_dssp             HHTSSCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999998888776554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.99  E-value=1.6e-09  Score=85.78  Aligned_cols=107  Identities=13%  Similarity=-0.024  Sum_probs=87.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHcCCHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID------IEPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~------l~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      .+++++|++.++.+....+....++..+|.++...|++++|+.+++++++      ..+....++..+|.+|...|++++
T Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   84 (203)
T 3gw4_A            5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA   84 (203)
T ss_dssp             --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            45688888865555443337789999999999999999999999999999      445567889999999999999999


Q ss_pred             HHHHHHHHHHH---CCCC----HHHHHHHHHHHhhchhhc
Q 026642          200 AKRLFKDILKE---RPLL----LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       200 A~~~l~kaL~~---~P~~----~~a~~~l~~~~~~~~~~~  232 (235)
                      |++.++++++.   .+++    ..++.++|.++...++.+
T Consensus        85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  124 (203)
T 3gw4_A           85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA  124 (203)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHH
Confidence            99999999998   4432    677899999988877644

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.99  E-value=1.2e-09  Score=80.06  Aligned_cols=69  Identities=12%  Similarity=0.088  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          164 KEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       164 ~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++|++.|+++++.+|+++.+++.+|.+|...|++++|++.|+++++.+|++..+++++|.++.+.++..
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~   70 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA   70 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH
Confidence            468999999999999999999999999999999999999999999999999999999999998887754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.98  E-value=5.7e-10  Score=98.23  Aligned_cols=108  Identities=12%  Similarity=0.069  Sum_probs=92.8

Q ss_pred             hcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEK------EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN-------EVEWKLLQALCY  191 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~------~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~-------~~~a~~~lA~~~  191 (235)
                      ..+++++|++.|+++++.      ++..++++..+|.+|...|++++|+.++++++++.+.       ...++..+|.+|
T Consensus       115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  194 (383)
T 3ulq_A          115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF  194 (383)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence            456789999999999986      2335689999999999999999999999999998443       346888999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhchhhc
Q 026642          192 ELMGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       192 ~~~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~~~~~  232 (235)
                      ..+|++++|++.|+++++..+..      ..++.++|.+|...++..
T Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~  241 (383)
T 3ulq_A          195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYE  241 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999876543      468999999999888754

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.98  E-value=1.2e-09  Score=94.12  Aligned_cols=84  Identities=13%  Similarity=-0.075  Sum_probs=39.3

Q ss_pred             CHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcC
Q 026642          128 GKSEVEEMFEKLLEKEP--RN----VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYELMG  195 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P--~~----~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~~g  195 (235)
                      ++++|++.|+++++..+  .+    +.++..+|.+|.. |++++|+++|++++++.+..      ..++..+|.+|..+|
T Consensus        91 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g  169 (307)
T 2ifu_A           91 RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ  169 (307)
T ss_dssp             CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC
Confidence            34455555555544421  11    2344445555544 55555555555555444322      234444555555555


Q ss_pred             CHHHHHHHHHHHHHHCC
Q 026642          196 KLSTAKRLFKDILKERP  212 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~P  212 (235)
                      +|++|+..|+++++..|
T Consensus       170 ~~~~A~~~~~~al~~~~  186 (307)
T 2ifu_A          170 KFDEAAASLQKEKSMYK  186 (307)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            55555555555554433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.98  E-value=7e-10  Score=88.32  Aligned_cols=72  Identities=11%  Similarity=-0.037  Sum_probs=66.8

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          158 MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL----------STAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       158 ~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~----------~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      .+.+.|++|++.++++++++|+++++|+++|.++...|++          ++|+..|+++|+++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3567799999999999999999999999999999999875          599999999999999999999999999987


Q ss_pred             ch
Q 026642          228 TL  229 (235)
Q Consensus       228 ~~  229 (235)
                      .+
T Consensus        93 lg   94 (158)
T 1zu2_A           93 FA   94 (158)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.96  E-value=1.8e-08  Score=89.27  Aligned_cols=100  Identities=8%  Similarity=0.003  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR--NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK-LSTAKRLFK  205 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~--~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~-~~~A~~~l~  205 (235)
                      +++++..++.++..+|++..+|...+.++...|+  +++++++++++++.+|.|..+|..++.++...|+ ++++++.++
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            5789999999999999999999999999999994  9999999999999999999999999999999999 699999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhc
Q 026642          206 DILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      ++++.+|.|..+|..++.++.+.
T Consensus       170 ~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          170 SLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999887765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.96  E-value=1.4e-09  Score=94.46  Aligned_cols=107  Identities=16%  Similarity=0.028  Sum_probs=79.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVE------ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYEL  193 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~------a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~  193 (235)
                      .+++++|++.++++++..++..+      ++..+|.+|...|++++|+.++++++++.+..      ..++..+|.+|..
T Consensus       200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  279 (406)
T 3sf4_A          200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  279 (406)
T ss_dssp             HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence            45677888888888876544333      77888888888888888888888888776654      6677788888888


Q ss_pred             cCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhchhhc
Q 026642          194 MGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       194 ~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~~~~~  232 (235)
                      .|++++|++.|+++++..+..      ..++..+|.+|.+.++..
T Consensus       280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            888888888888888775543      667778888777766543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.95  E-value=7.2e-09  Score=95.47  Aligned_cols=113  Identities=17%  Similarity=0.072  Sum_probs=94.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCC
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNV-EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC-YELMGK  196 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~-~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~-~~~~g~  196 (235)
                      +..-....+++++|++.|+++++.+|+++ .+|..++..+.+.|++++|.+.|+++++..|.....+...|.+ +...|+
T Consensus       327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~  406 (530)
T 2ooe_A          327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD  406 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC
Confidence            33444445678999999999999999986 6999999999999999999999999999888877777766655 446899


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      +++|.+.|+++++.+|++..+|..++.++.+.++.
T Consensus       407 ~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~  441 (530)
T 2ooe_A          407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED  441 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH
T ss_pred             hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH
Confidence            99999999999999999999999999888776654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.95  E-value=2.1e-09  Score=87.94  Aligned_cols=98  Identities=14%  Similarity=0.127  Sum_probs=89.1

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCC
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG----RNKEALEFVKRLIDIEPNEVEWKLLQALCYEL----MGK  196 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g----~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~----~g~  196 (235)
                      ..+++++|+++|+++++.  ++++++..||.+|.. +    ++++|+++|+++++  ++++.+++.+|.+|..    .++
T Consensus        30 ~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d  104 (212)
T 3rjv_A           30 SSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATD  104 (212)
T ss_dssp             HHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCC
T ss_pred             cCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccC
Confidence            356799999999999886  689999999999998 7    99999999999965  5799999999999998    899


Q ss_pred             HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHhh
Q 026642          197 LSTAKRLFKDILKERP--LLLRALHDLGRYVSM  227 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P--~~~~a~~~l~~~~~~  227 (235)
                      +++|+++|+++++..+  +++.+++++|.+|..
T Consensus       105 ~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A          105 VAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            9999999999999988  459999999999987

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.94  E-value=3.5e-09  Score=90.23  Aligned_cols=113  Identities=15%  Similarity=0.047  Sum_probs=91.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVE------ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQA  188 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~------a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA  188 (235)
                      +.....+++++|+..++++++..+.+.+      .+..+|..+...|++++|+.++++++++.+..      ..++..+|
T Consensus        83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg  162 (293)
T 3u3w_A           83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA  162 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            3445567899999999999998877766      33458888998999999999999999965442      34688999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHH---CCCC----HHHHHHHHHHHhhchhhcc
Q 026642          189 LCYELMGKLSTAKRLFKDILKE---RPLL----LRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       189 ~~~~~~g~~~~A~~~l~kaL~~---~P~~----~~a~~~l~~~~~~~~~~~~  233 (235)
                      .+|..+|++++|+..|+++++.   .+.+    ..+++++|.+|.+.++..+
T Consensus       163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~  214 (293)
T 3u3w_A          163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE  214 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHH
Confidence            9999999999999999999952   1122    6789999999998887543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.93  E-value=2e-08  Score=88.91  Aligned_cols=102  Identities=10%  Similarity=0.042  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR----------NKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK--  196 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~----------~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~--  196 (235)
                      .++|++.++++|..+|++..+|...+.+....|+          +++++.++++++..+|.+..+|..++.++...|+  
T Consensus        46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~  125 (331)
T 3dss_A           46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  125 (331)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence            3689999999999999999999999999988776          7899999999999999999999999999999994  


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          197 LSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      ++++++.++++++.+|.|..+|...+.++...+.
T Consensus       126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~  159 (331)
T 3dss_A          126 WARELELCARFLEADERNFHCWDYRRFVAAQAAV  159 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999988877654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.91  E-value=1.9e-09  Score=94.76  Aligned_cols=111  Identities=18%  Similarity=0.063  Sum_probs=91.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNVE------ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALC  190 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~~------a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~  190 (235)
                      ....+++++|++.|+++++..+...+      ++..+|.+|...|++++|++++++++++.+..      ..++..+|.+
T Consensus       233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  312 (411)
T 4a1s_A          233 YYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNT  312 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34456789999999999987664433      88999999999999999999999999987754      6788899999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhchhhcc
Q 026642          191 YELMGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       191 ~~~~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~~~~~~  233 (235)
                      |..+|++++|++.|+++++..++.      ..++..++.+|.+.++.++
T Consensus       313 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  361 (411)
T 4a1s_A          313 YTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER  361 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence            999999999999999999875443      5688899999888877543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.90  E-value=1.7e-09  Score=93.78  Aligned_cols=111  Identities=8%  Similarity=-0.083  Sum_probs=55.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCC
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE--VEWKLLQALCYELMGK  196 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~--~~a~~~lA~~~~~~g~  196 (235)
                      +.......+++++|.+.|+.++..+|++. +++.+|.++++.|+|++|+.++++++...++.  ..+++.+|.++..+|+
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~  186 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL  186 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence            33444445556666666666665556554 55555555555555555555555444432111  2345555555555555


Q ss_pred             HHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHhhchh
Q 026642          197 LSTAKRLFKDILKER--PL-LLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~--P~-~~~a~~~l~~~~~~~~~  230 (235)
                      +++|++.|++++...  |. ...+++.+|+++.+.++
T Consensus       187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr  223 (282)
T 4f3v_A          187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN  223 (282)
T ss_dssp             HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC
Confidence            555555555554322  33 23455555555544444

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.89  E-value=4.1e-09  Score=92.76  Aligned_cols=112  Identities=16%  Similarity=0.073  Sum_probs=92.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPR-------NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN------EVEWKLLQA  188 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~-------~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~------~~~a~~~lA  188 (235)
                      -....+++++|+..++++++..+.       .+.++..+|.+|...|++++|++++++++++.+.      ...++.++|
T Consensus       150 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  229 (378)
T 3q15_A          150 AYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA  229 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334456789999999999986332       3567889999999999999999999999986431      246788899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHhhchhhcc
Q 026642          189 LCYELMGKLSTAKRLFKDILK-----ERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       189 ~~~~~~g~~~~A~~~l~kaL~-----~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      .+|..+|++++|++.|+++++     .+|....++.++|.++.+.++.++
T Consensus       230 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  279 (378)
T 3q15_A          230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQK  279 (378)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999999     888889999999999998887543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.89  E-value=8.1e-09  Score=88.89  Aligned_cols=98  Identities=13%  Similarity=0.083  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 026642          127 MGKSEVEEMFEKLLEKEPRN------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYELM  194 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~~~  194 (235)
                      +++++|++.|+++++..+..      ..++..+|.+|...|++++|+++|++++++.+++      ..++..+|.++..+
T Consensus       129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~  208 (307)
T 2ifu_A          129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR  208 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence            67899999999999986654      6789999999999999999999999999987654      34788899999999


Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHH
Q 026642          195 GKLSTAKRLFKDILKERPLLL-----RALHDLGRYV  225 (235)
Q Consensus       195 g~~~~A~~~l~kaL~~~P~~~-----~a~~~l~~~~  225 (235)
                      |++++|+..|++++ .+|++.     ..+..++..+
T Consensus       209 g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~  243 (307)
T 2ifu_A          209 ADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY  243 (307)
T ss_dssp             TCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999 999763     3344555444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.88  E-value=2.7e-09  Score=89.44  Aligned_cols=108  Identities=16%  Similarity=0.021  Sum_probs=88.0

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRN------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYE  192 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~  192 (235)
                      ..+++++|++.++++++..+..      ..++..+|.++...|++++|++++++++++.+..      ..++..+|.+|.
T Consensus       195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  274 (338)
T 3ro2_A          195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  274 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence            3456889999999988764432      2388999999999999999999999999887655      678888999999


Q ss_pred             HcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhchhhc
Q 026642          193 LMGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       193 ~~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~~~~~  232 (235)
                      ..|++++|...++++++..+..      ..++..++.+|.+.++.+
T Consensus       275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  320 (338)
T 3ro2_A          275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD  320 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            9999999999999998876543      567888888888877654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.88  E-value=1.2e-08  Score=90.97  Aligned_cols=103  Identities=7%  Similarity=-0.036  Sum_probs=98.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-------
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR-G-RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLS-------  198 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~-g-~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~-------  198 (235)
                      .++++++.++++|..+|++..+|...+.++... + ++++++++++++++.+|.+..+|..++.++...|+++       
T Consensus       104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~  183 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW  183 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence            489999999999999999999999999999998 8 9999999999999999999999999999999999988       


Q ss_pred             -HHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          199 -TAKRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       199 -~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                       ++++.++++++.+|.|..+|..++.++.+.+.
T Consensus       184 ~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          184 GSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence             99999999999999999999999999887654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.85  E-value=4.7e-08  Score=89.12  Aligned_cols=96  Identities=10%  Similarity=-0.008  Sum_probs=79.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMR----RGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL----MGKL  197 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~----~g~~  197 (235)
                      ..++++|+.+|+++++.  ++++++..||.+|..    .+++++|+++|+++++.  +++.+++.+|.+|..    .+++
T Consensus        56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~  131 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDK  131 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence            56778888888888876  678888888888888    88888888888888775  478888888888888    7888


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          198 STAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      ++|++.|+++.+.  ++..+++++|.+|..
T Consensus       132 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  159 (490)
T 2xm6_A          132 AESVKWFRLAAEQ--GRDSGQQSMGDAYFE  159 (490)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            8888888888765  478888888888765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.84  E-value=3.2e-08  Score=75.87  Aligned_cols=91  Identities=10%  Similarity=0.006  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL----MGKLSTAKRLF  204 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~----~g~~~~A~~~l  204 (235)
                      +++|+++|+++.+.+  ++++.  +|.+|...+..++|+++|+++.+.  +++.+++.+|.+|..    .+++++|+++|
T Consensus        11 ~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~   84 (138)
T 1klx_A           11 LKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY   84 (138)
T ss_dssp             HHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            455556666655554  23333  555555555555566666666554  455566666666555    55566666666


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhh
Q 026642          205 KDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      +++.+.  ++..++++++.+|..
T Consensus        85 ~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           85 SKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHcC--CCHHHHHHHHHHHHC
Confidence            665554  455555666655554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.82  E-value=2.1e-08  Score=88.20  Aligned_cols=111  Identities=13%  Similarity=0.028  Sum_probs=89.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHHHHHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEP------RNVEALKVVMQGNMRRGRNKEALEFVKRLID-----IEPNEVEWKLLQ  187 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P------~~~~a~~~la~~~~~~g~~~eAi~~l~kai~-----l~P~~~~a~~~l  187 (235)
                      +..-....+++++|++.|+++++..+      ....++..+|.+|...|++++|+++++++++     .+|....++..+
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  267 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL  267 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence            33344456778999999999998522      2346889999999999999999999999999     788889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHhhch
Q 026642          188 ALCYELMGKLSTAKRLFKDILKERPL-----LLRALHDLGRYVSMTL  229 (235)
Q Consensus       188 A~~~~~~g~~~~A~~~l~kaL~~~P~-----~~~a~~~l~~~~~~~~  229 (235)
                      |.+|..+|++++|+..++++++..+.     ....+..++.++...+
T Consensus       268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~  314 (378)
T 3q15_A          268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV  314 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999998543     3444555555555444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.81  E-value=1e-07  Score=72.96  Aligned_cols=90  Identities=11%  Similarity=0.055  Sum_probs=80.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMR----RGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL----MGKLS  198 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~----~g~~~  198 (235)
                      ...++|+++|+++.+.  .+++++..||.+|..    .+++++|+++|+++.+.  .++.+.+.+|.+|..    .++++
T Consensus        39 ~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~  114 (138)
T 1klx_A           39 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK  114 (138)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHH
Confidence            3457799999999987  789999999999999    89999999999999987  689999999999999    99999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHH
Q 026642          199 TAKRLFKDILKERPLLLRALHDLG  222 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~  222 (235)
                      +|+++|+++.+..  +..+..+++
T Consensus       115 ~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A          115 QAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             HHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             HHHHHHHHHHHCC--CHHHHHHHh
Confidence            9999999999874  666666654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.77  E-value=8.9e-08  Score=85.80  Aligned_cols=87  Identities=17%  Similarity=0.205  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------------------------------------------HHcCCHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGN--------------------------------------------MRRGRNK  164 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~--------------------------------------------~~~g~~~  164 (235)
                      ..+|+.+|+++++.+|+++.+|..++.+|                                            +..|+++
T Consensus       215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d  294 (372)
T 3ly7_A          215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD  294 (372)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHH
Confidence            48899999999999999999988655544                                            2368888


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Q 026642          165 EALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLR  216 (235)
Q Consensus       165 eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~  216 (235)
                      +|+..++++++++|+ ..+|..+|.++...|++++|++.|++++.++|....
T Consensus       295 ~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          295 ESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            888888888888864 667788888888888888888888888888887743

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.77  E-value=3.4e-08  Score=85.55  Aligned_cols=100  Identities=13%  Similarity=-0.070  Sum_probs=84.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCC
Q 026642          122 KRDALMGKSEVEEMFEKLLEKE-PR-NVEALKVVMQGNMRRGRNKEALEFVKRLIDIE--PN-EVEWKLLQALCYELMGK  196 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~-P~-~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~--P~-~~~a~~~lA~~~~~~g~  196 (235)
                      .....+++++|+..|+++.+.. |. ..++++.+|.++...|++++|+.+|++++.-.  |. .+++++.+|.++..+|+
T Consensus       144 l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr  223 (282)
T 4f3v_A          144 VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN  223 (282)
T ss_dssp             HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC
Confidence            4445677999999999876643 22 14689999999999999999999999999654  55 56899999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHH
Q 026642          197 LSTAKRLFKDILKERPLLLRALHDLG  222 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a~~~l~  222 (235)
                      .++|...|++++..+|+ ..+...|.
T Consensus       224 ~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          224 ESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            99999999999999999 77776654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.75  E-value=5.2e-08  Score=90.53  Aligned_cols=104  Identities=13%  Similarity=0.028  Sum_probs=83.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEK-----EPR---NVEALKVVMQGNMRRGRNKEALEFVKRLIDI-----EPNEV---EWKLL  186 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~-----~P~---~~~a~~~la~~~~~~g~~~eAi~~l~kai~l-----~P~~~---~a~~~  186 (235)
                      ....+++++|+..++++|+.     .++   -+..+..||.+|..+|+|++|+.+++++++.     .|+++   ..+++
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            44567899999999999985     344   4567899999999999999999999999975     45554   56889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH-----HCCCCH---HHHHHHHHHHh
Q 026642          187 QALCYELMGKLSTAKRLFKDILK-----ERPLLL---RALHDLGRYVS  226 (235)
Q Consensus       187 lA~~~~~~g~~~~A~~~l~kaL~-----~~P~~~---~a~~~l~~~~~  226 (235)
                      +|.+|..+|+|++|+..|+++++     +-|+++   .....++.++.
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~  446 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEM  446 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999987     457773   33445554443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.74  E-value=5.4e-08  Score=70.00  Aligned_cols=76  Identities=16%  Similarity=0.081  Sum_probs=61.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN--EVEWKLLQALCYELM  194 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~--~~~a~~~lA~~~~~~  194 (235)
                      +.......+++++|++.|+++++.+|+++.+|..+|.+|...|++++|+++|++++++.|+  +......+..++...
T Consensus        13 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~~   90 (100)
T 3ma5_A           13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKA   90 (100)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHc
Confidence            3344445677999999999999999999999999999999999999999999999998764  344444445444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.73  E-value=7.8e-08  Score=71.98  Aligned_cols=92  Identities=12%  Similarity=0.024  Sum_probs=76.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRN------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN------EVEWKLLQAL  189 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~------~~~a~~~lA~  189 (235)
                      .....+++++|++.++++++..+..      ..++..+|.++...|++++|++++++++++.+.      ...++..+|.
T Consensus        58 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~  137 (164)
T 3ro3_A           58 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN  137 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHH
Confidence            3344667899999999999875432      678999999999999999999999999987432      2567888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHCCC
Q 026642          190 CYELMGKLSTAKRLFKDILKERPL  213 (235)
Q Consensus       190 ~~~~~g~~~~A~~~l~kaL~~~P~  213 (235)
                      +|...|++++|.+.++++++....
T Consensus       138 ~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          138 AYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.71  E-value=7.5e-08  Score=83.83  Aligned_cols=110  Identities=10%  Similarity=-0.031  Sum_probs=86.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRN--V----EALKVVMQGNMRRGRNKEALEFVKRLIDIE--------PNEVEWKLLQA  188 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~--~----~a~~~la~~~~~~g~~~eAi~~l~kai~l~--------P~~~~a~~~lA  188 (235)
                      ....+++++|++.++++++..+..  .    .++..+|.++...|++++|++++++++++.        |....++..+|
T Consensus        63 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  142 (373)
T 1hz4_A           63 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA  142 (373)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHH
Confidence            344567899999999988864432  2    346788999999999999999999999875        33456777899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHhhchhhc
Q 026642          189 LCYELMGKLSTAKRLFKDILKERPLL-----LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       189 ~~~~~~g~~~~A~~~l~kaL~~~P~~-----~~a~~~l~~~~~~~~~~~  232 (235)
                      .+|...|++++|...+++++...+..     ..++..++.++...++..
T Consensus       143 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~  191 (373)
T 1hz4_A          143 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD  191 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999988753     567788888887776643

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.70  E-value=4.3e-08  Score=89.71  Aligned_cols=92  Identities=17%  Similarity=0.088  Sum_probs=76.9

Q ss_pred             cCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEK-----EPRNV---EALKVVMQGNMRRGRNKEALEFVKRLIDI-----EPNEV---EWKLLQAL  189 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~-----~P~~~---~a~~~la~~~~~~g~~~eAi~~l~kai~l-----~P~~~---~a~~~lA~  189 (235)
                      .+++++|+..++++|+.     .|+++   ..+..||.+|..+|+|++|+.+++++++.     .|+++   ..++++|.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            45689999999999985     45554   56889999999999999999999999974     45554   56889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHH-----CCCCHHH
Q 026642          190 CYELMGKLSTAKRLFKDILKE-----RPLLLRA  217 (235)
Q Consensus       190 ~~~~~g~~~~A~~~l~kaL~~-----~P~~~~a  217 (235)
                      +|..+|+|++|+..|+++++.     -|+++.+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            999999999999999999884     4666433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.69  E-value=5.7e-08  Score=84.33  Aligned_cols=84  Identities=12%  Similarity=0.065  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-cCCHHHH
Q 026642          130 SEVEEMFEKLLEKEPR--NVEALKVVMQGNMRR-----GRNKEALEFVKRLIDIEPNE-VEWKLLQALCYEL-MGKLSTA  200 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~--~~~a~~~la~~~~~~-----g~~~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~-~g~~~~A  200 (235)
                      .+|...+++++++||+  +..+|..+|.+|...     |+.++|.++|+++++++|+. ...++.+|..+.. +|++++|
T Consensus       180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a  259 (301)
T 3u64_A          180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF  259 (301)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence            6788999999999999  777999999999995     99999999999999999985 9999999999988 5999999


Q ss_pred             HHHHHHHHHHCCC
Q 026642          201 KRLFKDILKERPL  213 (235)
Q Consensus       201 ~~~l~kaL~~~P~  213 (235)
                      .+++++++..+|.
T Consensus       260 ~~~L~kAL~a~p~  272 (301)
T 3u64_A          260 DEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHCCGG
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999998887

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.69  E-value=2.4e-07  Score=84.46  Aligned_cols=95  Identities=15%  Similarity=0.105  Sum_probs=68.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG---RNKEALEFVKRLIDIEPNEVEWKLLQALCYEL----MGKLST  199 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g---~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~----~g~~~~  199 (235)
                      .++++|+.+|+++++.  .+++++..+|.+|...|   ++++|+++|+++++.  +++.+++.+|.+|..    .+++++
T Consensus       310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~  385 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQ  385 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            4567777777777665  45677777777777755   677777777777766  467777777777777    777777


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          200 AKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       200 A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      |+++|+++++..  +..+++++|.+|.+
T Consensus       386 A~~~~~~A~~~~--~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          386 AAIWMRKAAEQG--LSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--CHHHHHHHHHHHHc
Confidence            777777777653  57777777777765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.69  E-value=5.4e-08  Score=84.77  Aligned_cols=107  Identities=14%  Similarity=0.021  Sum_probs=88.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHc
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNV-----EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV------EWKLLQALCYELM  194 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~-----~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~------~a~~~lA~~~~~~  194 (235)
                      .+++++|+..++++++..|.+.     .++..+|.++...|++++|++.+++++++.+...      .++..+|.++...
T Consensus        27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  106 (373)
T 1hz4_A           27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  106 (373)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence            4458899999999999877553     2678899999999999999999999999765432      3467899999999


Q ss_pred             CCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHhhchhhc
Q 026642          195 GKLSTAKRLFKDILKER--------PLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       195 g~~~~A~~~l~kaL~~~--------P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      |++++|++.++++++..        |....++.+++.++...++..
T Consensus       107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  152 (373)
T 1hz4_A          107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD  152 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence            99999999999999875        334677888999888777643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.64  E-value=1.3e-07  Score=86.25  Aligned_cols=91  Identities=15%  Similarity=0.154  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----CHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQG-N--MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMG-----KLST  199 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~-~--~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g-----~~~~  199 (235)
                      ++++|+++|++++   |++++++..+|.+ +  ...|++++|+++|+++++.  +++.+++.+|.+|. .|     ++++
T Consensus       232 d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~  305 (452)
T 3e4b_A          232 DEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKA  305 (452)
T ss_dssp             CHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred             CHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHH
Confidence            4455555555554   4555555555555 2  2355555555555555543  25555555555555 33     5555


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          200 AKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       200 A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      |+++|+++.   ++++.+++++|.+|..
T Consensus       306 A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          306 AEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             HHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence            555555555   5555555555555544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.62  E-value=5.5e-07  Score=68.78  Aligned_cols=93  Identities=11%  Similarity=0.074  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKE---ALEFVKRLIDIE-P-NEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~e---Ai~~l~kai~l~-P-~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      ...+++.|++.+..++.+.++.+.+|+.+.+.++..+   +|..++.+++.+ | ..-+..+.+|..++.+|+|++|.++
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            5678889999999899999999999999999888776   999999999987 5 4568999999999999999999999


Q ss_pred             HHHHHHHCCCCHHHHHHH
Q 026642          204 FKDILKERPLLLRALHDL  221 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l  221 (235)
                      ++.+|+.+|+|..+..-.
T Consensus        97 ~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           97 VRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHH
Confidence            999999999996555433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.59  E-value=2.9e-07  Score=84.03  Aligned_cols=104  Identities=13%  Similarity=0.049  Sum_probs=83.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEK-----EPRN---VEALKVVMQGNMRRGRNKEALEFVKRLIDI-----EPNEV---EWKL  185 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~-----~P~~---~~a~~~la~~~~~~g~~~eAi~~l~kai~l-----~P~~~---~a~~  185 (235)
                      +....+.+++|+..++++|+.     .|++   +..+..+|.+|..+|+|++|+.+++++++.     .|+++   ..++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            344566899999999999975     3444   467889999999999999999999999974     35554   5688


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCH---HHHHHHHHHH
Q 026642          186 LQALCYELMGKLSTAKRLFKDILK-----ERPLLL---RALHDLGRYV  225 (235)
Q Consensus       186 ~lA~~~~~~g~~~~A~~~l~kaL~-----~~P~~~---~a~~~l~~~~  225 (235)
                      ++|.+|..+|++++|+..|+++++     .-|+++   .++.+++.+.
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            999999999999999999999987     357774   4445555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.56  E-value=4.3e-07  Score=65.46  Aligned_cols=54  Identities=26%  Similarity=0.343  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVE  182 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~  182 (235)
                      .++|+..++++|+.||+++.++..+|..+++.|+|++|+.+++++++.+|+++.
T Consensus        25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            589999999999999999999999999999999999999999999999999433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.55  E-value=5.9e-07  Score=81.76  Aligned_cols=95  Identities=14%  Similarity=0.084  Sum_probs=85.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H--HHcCCHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR----GRNKEALEFVKRLIDIEPNEVEWKLLQALC-Y--ELMGKLSTA  200 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~----g~~~eAi~~l~kai~l~P~~~~a~~~lA~~-~--~~~g~~~~A  200 (235)
                      +.++|+++|+++++.++.++..+..+|.+|...    +++++|+++|+++.   |+++.+++.+|.+ |  ...|++++|
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A  270 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM  270 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence            578999999999999999999999999999765    79999999999997   8999999999998 4  578999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          201 KRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      +++|+++.+.  ++..+++++|.+|..
T Consensus       271 ~~~~~~Aa~~--g~~~A~~~Lg~~y~~  295 (452)
T 3e4b_A          271 MKYLDNGRAA--DQPRAELLLGKLYYE  295 (452)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            9999999865  489999999999874

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.44  E-value=1.3e-06  Score=77.21  Aligned_cols=109  Identities=15%  Similarity=0.129  Sum_probs=79.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNV-----------------EALKVVMQGNMRRGRNKEALEFVKRLIDIEPN------  179 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~-----------------~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~------  179 (235)
                      ....+++++|++.|.++++.+++..                 .++..+|.+|...|++++|+++++++++..+.      
T Consensus        14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~   93 (434)
T 4b4t_Q           14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT   93 (434)
T ss_dssp             HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence            3445679999999999999887654                 36888999999999999999888877664322      


Q ss_pred             ----------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCC
Q 026642          180 ----------------------------------------EVEWKLLQALCYELMGKLSTAKRLFKDILKE------RPL  213 (235)
Q Consensus       180 ----------------------------------------~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~------~P~  213 (235)
                                                              ....+..+|.+|...|+|++|...+++++..      .+.
T Consensus        94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~  173 (434)
T 4b4t_Q           94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS  173 (434)
T ss_dssp             HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence                                                    1345556788888888888888888777664      222


Q ss_pred             CHHHHHHHHHHHhhchhh
Q 026642          214 LLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       214 ~~~a~~~l~~~~~~~~~~  231 (235)
                      .+.++..++.+|...++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~  191 (434)
T 4b4t_Q          174 LVDVHLLESKVYHKLRNL  191 (434)
T ss_dssp             HHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHhCcH
Confidence            266777777777766653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.43  E-value=6.1e-07  Score=78.65  Aligned_cols=82  Identities=22%  Similarity=0.171  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642          132 VEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP--NEVEWKLLQALCYELMGKLSTAKRLFKDILK  209 (235)
Q Consensus       132 A~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P--~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~  209 (235)
                      |+..+++.++..+.+..++..+|.++...|++++|++++++.+..+|  ++.+++...+.+|..+|+.++|.+.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            78889998888777788888999999999999999999999999997  8899999999999999999999999999999


Q ss_pred             HCCC
Q 026642          210 ERPL  213 (235)
Q Consensus       210 ~~P~  213 (235)
                      .+|+
T Consensus       165 ~~~d  168 (310)
T 3mv2_B          165 AIED  168 (310)
T ss_dssp             HSCH
T ss_pred             cCcc
Confidence            9993

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.37  E-value=4.1e-06  Score=60.88  Aligned_cols=69  Identities=16%  Similarity=0.147  Sum_probs=60.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKE-------PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQAL  189 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~-------P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~  189 (235)
                      ......+++.+|+.+|+++++..       ....+.+..+|.++.+.|++++|+.+++++++++|++..+..+++.
T Consensus        13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~   88 (104)
T 2v5f_A           13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (104)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHH
Confidence            34445667999999999999863       3568899999999999999999999999999999999999888873

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.32  E-value=3.2e-06  Score=74.10  Aligned_cols=103  Identities=10%  Similarity=0.046  Sum_probs=83.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHH--HH
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKEP--RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN----EVEWKLLQ--AL  189 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P--~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~----~~~a~~~l--A~  189 (235)
                      .+.......+++++|++++++.+..+|  ++.+++..++.++++.|+.+.|.+.++++.+.+|+    +......+  |.
T Consensus       105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~  184 (310)
T 3mv2_B          105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESY  184 (310)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHH
Confidence            344444556789999999999999987  99999999999999999999999999999999983    23334444  54


Q ss_pred             HHHHcC--CHHHHHHHHHHHHHHCCC--CHHHHHH
Q 026642          190 CYELMG--KLSTAKRLFKDILKERPL--LLRALHD  220 (235)
Q Consensus       190 ~~~~~g--~~~~A~~~l~kaL~~~P~--~~~a~~~  220 (235)
                      +....|  ++.+|...|+++.+..|+  ....+++
T Consensus       185 v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln  219 (310)
T 3mv2_B          185 IKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN  219 (310)
T ss_dssp             HHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence            466666  999999999999988887  4556666

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.29  E-value=2.4e-06  Score=74.10  Aligned_cols=87  Identities=15%  Similarity=0.087  Sum_probs=72.7

Q ss_pred             hCCCCHHHHHHHHHHHHH---c--CC------HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHH
Q 026642          142 KEPRNVEALKVVMQGNMR---R--GR------NKEALEFVKRLIDIEPN--EVEWKLLQALCYELM-----GKLSTAKRL  203 (235)
Q Consensus       142 ~~P~~~~a~~~la~~~~~---~--g~------~~eAi~~l~kai~l~P~--~~~a~~~lA~~~~~~-----g~~~~A~~~  203 (235)
                      .+|+++++++-.|.+...   .  |.      ..+|...+++++++||+  +..+|..+|.+|...     |+.++|.++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            467888888877776633   2  33      47899999999999999  566999999999995     999999999


Q ss_pred             HHHHHHHCCCC-HHHHHHHHHHHhhc
Q 026642          204 FKDILKERPLL-LRALHDLGRYVSMT  228 (235)
Q Consensus       204 l~kaL~~~P~~-~~a~~~l~~~~~~~  228 (235)
                      |+++|+++|+. ..+++.++..+...
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~  252 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIP  252 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTT
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHh
Confidence            99999999975 88888888877653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.18  E-value=5.1e-06  Score=76.14  Aligned_cols=93  Identities=10%  Similarity=-0.027  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ++++|++.++++     +++..|..++.++...|+|+.|..+...++ .+|   +-...+..+|...|++++|+..++++
T Consensus       163 ~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~a---d~l~~lv~~Yek~G~~eEai~lLe~a  233 (449)
T 1b89_A          163 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHA---DELEELINYYQDRGYFEELITMLEAA  233 (449)
T ss_dssp             CHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCH---HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCH---hhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            344444444444     344555555555555555555544444321 222   22334667899999999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHhhch
Q 026642          208 LKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      +.+++.+...+.+++.+|.+-.
T Consensus       234 L~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          234 LGLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             TTSTTCCHHHHHHHHHHHHTTC
T ss_pred             hCCcHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999998754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.15  E-value=7.9e-06  Score=83.73  Aligned_cols=89  Identities=11%  Similarity=0.068  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      +++|++.+++     .+++++|..+|..+.+.|++++|+++|.++     +++..|..+|.++...|+|++|++.|+.+.
T Consensus      1092 ldrAiE~Aer-----vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A         1092 LDRAYEFAER-----CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred             HHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555555544     488999999999999999999999999886     889999999999999999999999999999


Q ss_pred             HHCCCC-HHHHHHHHHHHhhch
Q 026642          209 KERPLL-LRALHDLGRYVSMTL  229 (235)
Q Consensus       209 ~~~P~~-~~a~~~l~~~~~~~~  229 (235)
                      +.+++. +..  .+|.+|.+.+
T Consensus      1162 k~~~e~~Idt--~LafaYAKl~ 1181 (1630)
T 1xi4_A         1162 KKARESYVET--ELIFALAKTN 1181 (1630)
T ss_pred             hhcccccccH--HHHHHHHhhc
Confidence            888553 322  3666665553

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.15  E-value=4.9e-06  Score=73.35  Aligned_cols=105  Identities=13%  Similarity=0.060  Sum_probs=81.8

Q ss_pred             cCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKE------PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI------EPNEVEWKLLQALCYEL  193 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~------P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l------~P~~~~a~~~lA~~~~~  193 (235)
                      .+.+++|+..++++++..      +.-..++..+|.+|...|+|++|+..+++++..      .+...+++...|.+|..
T Consensus       108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
T 4b4t_Q          108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK  187 (434)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            346789999999888752      233678999999999999999999999999875      33346889999999999


Q ss_pred             cCCHHHHHHHHHHHHHHCCC---C----HHHHHHHHHHHhhchh
Q 026642          194 MGKLSTAKRLFKDILKERPL---L----LRALHDLGRYVSMTLQ  230 (235)
Q Consensus       194 ~g~~~~A~~~l~kaL~~~P~---~----~~a~~~l~~~~~~~~~  230 (235)
                      .|++++|...+++++...+.   .    ...+...|.++...++
T Consensus       188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  231 (434)
T 4b4t_Q          188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD  231 (434)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred             hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999886532   2    3445555655544443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.09  E-value=9.2e-06  Score=63.96  Aligned_cols=63  Identities=25%  Similarity=0.312  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKE-P-RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCY  191 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~-P-~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~  191 (235)
                      .++++.+++++++.+ | ++.++++.||..|++.|+|++|.++++++++.+|++.++...+-.+-
T Consensus        51 ~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           51 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            578999999999998 7 67999999999999999999999999999999999999988776654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.05  E-value=2.5e-05  Score=80.13  Aligned_cols=103  Identities=7%  Similarity=0.011  Sum_probs=84.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------------------
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP--------------------  178 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P--------------------  178 (235)
                      ..+...+.+.+++|...|.++        ..|..+|.+|.+.|++++|+++++++...++                    
T Consensus      1201 iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A         1201 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred             HHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHH
Confidence            445555567789999998875        6899999999999999999999998855443                    


Q ss_pred             -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          179 -----NEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       179 -----~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                           .+++.+..++..|...|.|++|+.+++++|.+++.+...+..++.+|.+-.
T Consensus      1273 gl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1273 GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence                 134455577788999999999999999999999999999999998887643

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.04  E-value=1.2e-05  Score=74.54  Aligned_cols=97  Identities=8%  Similarity=0.054  Sum_probs=79.4

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH
Q 026642          115 ASENLKEKRDALMGKSEVEEMFEKLLEK-----E---PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI-----EPNEV  181 (235)
Q Consensus       115 ~~~~~~e~~~~~~~~~eA~~~~e~aL~~-----~---P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l-----~P~~~  181 (235)
                      ....+.......+++++|+..++++|+.     .   |+-+..+.+||.+|..+|++++|+..|++++++     .|+.+
T Consensus       353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp  432 (490)
T 3n71_A          353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP  432 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            3444555666678899999999999975     3   444567899999999999999999999999974     56765


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          182 ---EWKLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       182 ---~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                         +....++.++..+|+|++|...|+++.+..
T Consensus       433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               455678999999999999999999986644

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.97  E-value=4.9e-05  Score=73.20  Aligned_cols=80  Identities=10%  Similarity=0.073  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642          131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEAL-EFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK  209 (235)
Q Consensus       131 eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi-~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~  209 (235)
                      .....|+++|...|.+++.|...+..+...|+.++|. +.|++++...|.+...|+.++.++...|++++|.+.|+++++
T Consensus       327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~  406 (679)
T 4e6h_A          327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID  406 (679)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999997 999999999999999999999999999999999999999997


Q ss_pred             H
Q 026642          210 E  210 (235)
Q Consensus       210 ~  210 (235)
                      .
T Consensus       407 ~  407 (679)
T 4e6h_A          407 R  407 (679)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.96  E-value=4e-05  Score=61.03  Aligned_cols=108  Identities=18%  Similarity=0.127  Sum_probs=81.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKEPRNV---------EALKVVMQGNMRRGRNKEALEFVKRLIDIE-----------  177 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~---------~a~~~la~~~~~~g~~~eAi~~l~kai~l~-----------  177 (235)
                      ...+...+.+.++.|+-....++....++.         +++..+|.+++.+|+|..|+..|++++.+.           
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~  104 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP  104 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            344555667779999988887666543333         488999999999999999999999987532           


Q ss_pred             --------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642          178 --------------PNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       178 --------------P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                                    +.+.+..+..|.||...|++++|+..++.+- ..-..+.+...||.+|.
T Consensus       105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLYK  166 (167)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHCC
T ss_pred             cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHhc
Confidence                          1124788999999999999999999987652 22234667777776664

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.93  E-value=0.00012  Score=56.23  Aligned_cols=88  Identities=8%  Similarity=0.023  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRN---KEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       131 eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~---~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      ..++.|++-+ .+.-.+++.+.+|+.+.+.++.   .++|..++.+++.+|.. -+.++.+|..++.+|+|++|.++.+.
T Consensus        25 ~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~  103 (134)
T 3o48_A           25 ILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT  103 (134)
T ss_dssp             HHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3444554433 3334689999999999998765   47999999999999855 78999999999999999999999999


Q ss_pred             HHHHCCCCHHHHH
Q 026642          207 ILKERPLLLRALH  219 (235)
Q Consensus       207 aL~~~P~~~~a~~  219 (235)
                      +|+.+|+|..+..
T Consensus       104 lL~~eP~N~QA~~  116 (134)
T 3o48_A          104 LFEHERNNKQVGA  116 (134)
T ss_dssp             HHTTCTTCHHHHH
T ss_pred             HHhhCCCCHHHHH
Confidence            9999999955543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.90  E-value=0.00048  Score=53.44  Aligned_cols=86  Identities=8%  Similarity=0.038  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          132 VEEMFEKLLEKEPRNVEALKVVMQGNMRRGRN---KEALEFVKRLIDIEPNE-VEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       132 A~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~---~eAi~~l~kai~l~P~~-~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      .++.|+.-+. +.-.++..+.+|+.+.+..+.   .++|..++.+++.+|.. -+..+.+|..++.+|+|++|.++.+.+
T Consensus        25 lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l  103 (144)
T 1y8m_A           25 LRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL  103 (144)
T ss_dssp             HHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3444444322 356889999999999998765   47999999999999965 678899999999999999999999999


Q ss_pred             HHHCCCCHHHH
Q 026642          208 LKERPLLLRAL  218 (235)
Q Consensus       208 L~~~P~~~~a~  218 (235)
                      |+.+|+|..+.
T Consensus       104 L~~eP~n~QA~  114 (144)
T 1y8m_A          104 FEHERNNKQVG  114 (144)
T ss_dssp             HHTCCCCHHHH
T ss_pred             HhcCCCcHHHH
Confidence            99999995444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.85  E-value=0.0002  Score=64.09  Aligned_cols=96  Identities=16%  Similarity=0.089  Sum_probs=71.9

Q ss_pred             HHHHHHhCCCCHHHHHHH--HHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHH---------------------
Q 026642          136 FEKLLEKEPRNVEALKVV--MQGNMRRGR---NKEALEFVKRLIDIEPNEVEWKLLQAL---------------------  189 (235)
Q Consensus       136 ~e~aL~~~P~~~~a~~~l--a~~~~~~g~---~~eAi~~l~kai~l~P~~~~a~~~lA~---------------------  189 (235)
                      .+++...-|.+.++|...  |..++..++   +.+|+.+|++++++||+++.++..++.                     
T Consensus       183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~  262 (372)
T 3ly7_A          183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT  262 (372)
T ss_dssp             HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence            334556678888887664  455555544   579999999999999998877775433                     


Q ss_pred             -----------------------HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          190 -----------------------CYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       190 -----------------------~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                                             ++...|++++|+..+++++.++|+ ..+|..+|.++.-.++.+
T Consensus       263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~  327 (372)
T 3ly7_A          263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNR  327 (372)
T ss_dssp             HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHH
Confidence                                   344579999999999999999975 667777777777666643

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.80  E-value=3.5e-05  Score=70.34  Aligned_cols=75  Identities=16%  Similarity=0.031  Sum_probs=63.0

Q ss_pred             HcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHH
Q 026642          159 RRGRNKEALEFVKRLIDI-----EPNEV---EWKLLQALCYELMGKLSTAKRLFKDILKE-----RPLL---LRALHDLG  222 (235)
Q Consensus       159 ~~g~~~eAi~~l~kai~l-----~P~~~---~a~~~lA~~~~~~g~~~~A~~~l~kaL~~-----~P~~---~~a~~~l~  222 (235)
                      ..|+|++|+..|++++++     .|+++   ..+.++|.+|..+|+|++|+.+++++|+.     -|++   ...+.++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            468999999999999984     56665   56788999999999999999999999974     3444   77889999


Q ss_pred             HHHhhchhhcc
Q 026642          223 RYVSMTLQIQS  233 (235)
Q Consensus       223 ~~~~~~~~~~~  233 (235)
                      .+|...++.++
T Consensus       390 ~~~~~qg~~~e  400 (433)
T 3qww_A          390 RLYMGLENKAA  400 (433)
T ss_dssp             HHHHHTTCHHH
T ss_pred             HHHHhccCHHH
Confidence            99998887543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.77  E-value=0.0002  Score=68.87  Aligned_cols=97  Identities=13%  Similarity=0.076  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK---LSTAKRLFKD  206 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~---~~~A~~~l~k  206 (235)
                      .+.+..|++.+..||.|.+.|..++......++++.|...|++++...|.....|...+......|+   ++.+...|++
T Consensus        49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR  128 (679)
T 4e6h_A           49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR  128 (679)
T ss_dssp             SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence            4567789999999999999999999999999999999999999999999999999999999999999   9999999999


Q ss_pred             HHHHCC--CCHHHHHHHHHHHh
Q 026642          207 ILKERP--LLLRALHDLGRYVS  226 (235)
Q Consensus       207 aL~~~P--~~~~a~~~l~~~~~  226 (235)
                      ++...|  .++..|........
T Consensus       129 al~~~~~~~sv~LW~~Yl~f~~  150 (679)
T 4e6h_A          129 CLSKELGNNDLSLWLSYITYVR  150 (679)
T ss_dssp             HTCSSSCCCCHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHH
Confidence            999994  56777766655443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.74  E-value=9.7e-05  Score=67.22  Aligned_cols=80  Identities=8%  Similarity=-0.059  Sum_probs=65.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCC---HHH
Q 026642          154 MQGNMRRGRNKEALEFVKRLIDI-----EPNEV---EWKLLQALCYELMGKLSTAKRLFKDILKE-----RPLL---LRA  217 (235)
Q Consensus       154 a~~~~~~g~~~eAi~~l~kai~l-----~P~~~---~a~~~lA~~~~~~g~~~~A~~~l~kaL~~-----~P~~---~~a  217 (235)
                      ..-+..+|+|++|++.++++++.     .|+++   ..+.++|.+|..+|+|++|+.+++++|+.     -|++   ...
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            44456789999999999999975     45554   56888999999999999999999999874     3555   677


Q ss_pred             HHHHHHHHhhchhhcc
Q 026642          218 LHDLGRYVSMTLQIQS  233 (235)
Q Consensus       218 ~~~l~~~~~~~~~~~~  233 (235)
                      +.++|.+|...++.++
T Consensus       374 l~nLa~~~~~~g~~~e  389 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQ  389 (429)
T ss_dssp             HHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhcCCHHH
Confidence            8999999998887543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.66  E-value=5.7e-06  Score=75.81  Aligned_cols=92  Identities=11%  Similarity=0.051  Sum_probs=0.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      +.++|.+.+++.     +++++|..+|.++.+.|++++|++.|.++     +++..+...+.++...|++++|+++++.+
T Consensus        18 ~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~a   87 (449)
T 1b89_A           18 NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMA   87 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            367777777776     34568888888888888888888888763     45667777888888888888888888877


Q ss_pred             HHHCCCCHHHHHHHHHHHhhchh
Q 026642          208 LKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      .+..++ +.+...++.+|.+.++
T Consensus        88 rk~~~~-~~i~~~Li~~Y~Klg~  109 (449)
T 1b89_A           88 RKKARE-SYVETELIFALAKTNR  109 (449)
T ss_dssp             ----------------------C
T ss_pred             HHhCcc-chhHHHHHHHHHHhCC
Confidence            775333 5556666666666654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.46  E-value=0.00027  Score=53.73  Aligned_cols=62  Identities=26%  Similarity=0.328  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKE-P-RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCY  191 (235)
Q Consensus       130 ~eA~~~~e~aL~~~-P-~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~  191 (235)
                      .+++.+++..++.+ | ..-+.++.||..+++.|+|++|.++++.+++.+|++.++..++..+-
T Consensus        55 ~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           55 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            56899999999987 5 67789999999999999999999999999999999999988877654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.37  E-value=0.00069  Score=51.90  Aligned_cols=63  Identities=17%  Similarity=0.243  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKEP-RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE  192 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P-~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~  192 (235)
                      .+++.+++..++.+| ..-+.++.||..+.+.|+|++|.++.+.+++.+|+|.++..++..+-.
T Consensus        60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~  123 (134)
T 3o48_A           60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVED  123 (134)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            578999999999998 457899999999999999999999999999999999999888777653

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.28  E-value=0.0013  Score=51.02  Aligned_cols=62  Identities=18%  Similarity=0.232  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKEP-RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCY  191 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P-~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~  191 (235)
                      .+++.+++..++.+| ..-+.++.||..+++.|+|++|.++.+.+++.+|+|.++..++..+-
T Consensus        59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie  121 (144)
T 1y8m_A           59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  121 (144)
T ss_dssp             HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            578999999999988 56789999999999999999999999999999999999988876654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.17  E-value=0.0051  Score=52.52  Aligned_cols=91  Identities=12%  Similarity=0.005  Sum_probs=74.2

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------------------
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV----------------------  181 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~----------------------  181 (235)
                      ...+..++|++..+..++.+|.|++....|.++++-.|+|+.|.+.++-+.+++|+..                      
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG   87 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   87 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence            3456689999999999999999999999999999999999999999999999998832                      


Q ss_pred             ----------HHHH---HHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          182 ----------EWKL---LQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       182 ----------~a~~---~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                                ..|.   ..|......|+.++|.+.-+++++..|..
T Consensus        88 ~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           88 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence                      1111   22445556688888888888888877653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.10  E-value=0.0026  Score=54.36  Aligned_cols=72  Identities=17%  Similarity=0.206  Sum_probs=62.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHhh
Q 026642          156 GNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLL---LRALHDLGRYVSM  227 (235)
Q Consensus       156 ~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~---~~a~~~l~~~~~~  227 (235)
                      ..++.|+.++|++.++..|+.+|.|...+..+.+++.-.|++++|.+.++-+.+++|+.   +..|.++..+...
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~   80 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA   80 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999   3345555544443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.07  E-value=0.0021  Score=50.35  Aligned_cols=88  Identities=10%  Similarity=0.040  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          130 SEVEEMFEKLLEKEPR--------NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~--------~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      ++-++.|++++..-|-        .+..|...+.. ...++.++|.+.|+.++.+....+..|...|+-...+|+.++|.
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR  114 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK  114 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence            7778999999987553        23445555544 45689999999999999998888999999999999999999999


Q ss_pred             HHHHHHHHHCCCCHHHH
Q 026642          202 RLFKDILKERPLLLRAL  218 (235)
Q Consensus       202 ~~l~kaL~~~P~~~~a~  218 (235)
                      +.+.+++.+.|.....+
T Consensus       115 kILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A          115 QLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHHHHHTTCBCHHHH
T ss_pred             HHHHHHhccCCCcHHHH
Confidence            99999999999875443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.03  E-value=0.0065  Score=54.27  Aligned_cols=84  Identities=13%  Similarity=0.058  Sum_probs=69.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRN----------------------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEW  183 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~----------------------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a  183 (235)
                      .++.++|.+.+++++......                      ..+...++..+...|++++|+..+++++..+|-+-.+
T Consensus       128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~  207 (388)
T 2ff4_A          128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPL  207 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            346778888888888764221                      0234456667788999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642          184 KLLQALCYELMGKLSTAKRLFKDILK  209 (235)
Q Consensus       184 ~~~lA~~~~~~g~~~~A~~~l~kaL~  209 (235)
                      |..+..+|+..|+..+|.+.|+++-.
T Consensus       208 ~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          208 WTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999988643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.01  E-value=0.013  Score=53.99  Aligned_cols=80  Identities=10%  Similarity=0.102  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKE-PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE-PNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       130 ~eA~~~~e~aL~~~-P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~-P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ++|.+.|++..+.. .-|...|..+...|.+.|++++|++.+++..+.. .-+...|..+-..|...|+.++|.+.|++.
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            34444444443321 1134444445555555555555555555444432 112344444444444555555555555444


Q ss_pred             HH
Q 026642          208 LK  209 (235)
Q Consensus       208 L~  209 (235)
                      .+
T Consensus       167 ~~  168 (501)
T 4g26_A          167 VE  168 (501)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.78  E-value=0.016  Score=53.25  Aligned_cols=57  Identities=16%  Similarity=0.122  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQ  187 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~l  187 (235)
                      +.....|++++...|.+++.|...+..+...|+.++|.+.|++++.. |.+...|+..
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y  252 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYY  252 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            34567999999999999999999999999999999999999999999 8875544433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.69  E-value=0.019  Score=52.74  Aligned_cols=93  Identities=15%  Similarity=0.098  Sum_probs=73.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG-RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g-~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      ++.+.|...|+++ +..+.....|...+.+....| +.+.|...|+++++..|+++..|...+......|+.+.|...|+
T Consensus       300 ~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e  378 (493)
T 2uy1_A          300 RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK  378 (493)
T ss_dssp             HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3578899999999 433346678877787777666 69999999999999999999988888888899999999999998


Q ss_pred             HHHHHCCCCHHHHHHHHHH
Q 026642          206 DILKERPLLLRALHDLGRY  224 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~  224 (235)
                      ++    +.....|......
T Consensus       379 r~----~k~~~lw~~~~~f  393 (493)
T 2uy1_A          379 RL----EKTSRMWDSMIEY  393 (493)
T ss_dssp             HS----CCBHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHHHHH
Confidence            87    3345555444443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.59  E-value=0.026  Score=44.20  Aligned_cols=57  Identities=9%  Similarity=0.113  Sum_probs=44.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEW  183 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a  183 (235)
                      ++.++|.+.|+.++....+.+..|...|+-..++|+.+.|.+.+.+++...|...+.
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            456778888888877777777888888888888888888888888888888775544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.53  E-value=0.013  Score=54.36  Aligned_cols=81  Identities=14%  Similarity=0.045  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      .+..||.+.--...++.|..+|.+|+.+.|++...++.+|.+....|+.-+|.-+|-+++....-+..+..++..++.+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            56678888888888999999999999999999999999999999999999999999999987777888999988888764


Q ss_pred             h
Q 026642          229 L  229 (235)
Q Consensus       229 ~  229 (235)
                      .
T Consensus       234 ~  234 (497)
T 1ya0_A          234 L  234 (497)
T ss_dssp             T
T ss_pred             H
Confidence            3

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.0085  Score=58.20  Aligned_cols=59  Identities=15%  Similarity=0.078  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      .+..-+.-+...|+|+-|+++.++++..-|.+-..|+.||.||..+|+|+.|.-.++.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34444555677899999999999999999999999999999999999999999888766

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.36  E-value=0.084  Score=48.60  Aligned_cols=93  Identities=11%  Similarity=-0.001  Sum_probs=76.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcC
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKE-PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP-NEVEWKLLQALCYELMG  195 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~-P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P-~~~~a~~~lA~~~~~~g  195 (235)
                      .+....-..++.++|.++|++..+.. .-|...|..+...|.+.|+.++|.+.+++..+..- -+...|..+-.+|...|
T Consensus       110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g  189 (501)
T 4g26_A          110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTK  189 (501)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCC
Confidence            34445555667899999999988753 22688999999999999999999999999987542 24677888899999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 026642          196 KLSTAKRLFKDILKE  210 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~  210 (235)
                      +.++|.+.|++.-+.
T Consensus       190 ~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          190 NADKVYKTLQRLRDL  204 (501)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998664

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.34  E-value=0.012  Score=46.58  Aligned_cols=85  Identities=9%  Similarity=0.024  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-------
Q 026642          149 ALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV---------EWKLLQALCYELMGKLSTAKRLFKDILKERP-------  212 (235)
Q Consensus       149 a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~---------~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P-------  212 (235)
                      ++..-+..++..|.|+.|+-..+.++.+..+++         +....+|.+++..|+|..|...|+++|+..-       
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            445556677889999999999999887653333         4778899999999999999999999876432       


Q ss_pred             ------------------CCHHHHHHHHHHHhhchhhcc
Q 026642          213 ------------------LLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       213 ------------------~~~~a~~~l~~~~~~~~~~~~  233 (235)
                                        .+.+..|.++.+|.+.++..+
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence                              113677889999988877543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.074  Score=51.64  Aligned_cols=103  Identities=10%  Similarity=0.047  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cC-CHHHHHHHHHHHHh--------hCCCCHH----------HHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMR--RG-RNKEALEFVKRLID--------IEPNEVE----------WKLLQ  187 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~--~g-~~~eAi~~l~kai~--------l~P~~~~----------a~~~l  187 (235)
                      ++.|++.+++..+.+|.... +...+.+...  .+ +--+|++.+.+.++        +.+.+..          ....=
T Consensus       265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q  343 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ  343 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence            47899999999999987543 3333333322  22 33467777777764        2333332          22223


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          188 ALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       188 A~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +.-+...|+|+-|.+..++++...|.....|+.|+.+|.+.+|-+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e  388 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYE  388 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHH
Confidence            566778999999999999999999999999999999999998854

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.07  E-value=0.22  Score=39.75  Aligned_cols=78  Identities=10%  Similarity=0.029  Sum_probs=54.2

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHH--------
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE--------PNEVEWKLLQ--------  187 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~--------P~~~~a~~~l--------  187 (235)
                      .+.++++.|.+..++.     ++...|..||...+.+|+++-|+++|+++=..+        -.+.+.+..+        
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g   90 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTRE   90 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCc
Confidence            3456688888877665     788999999999999999999999998763322        1122222222        


Q ss_pred             -----HHHHHHcCCHHHHHHHHHH
Q 026642          188 -----ALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       188 -----A~~~~~~g~~~~A~~~l~k  206 (235)
                           ..++..+|+++++++.|.+
T Consensus        91 ~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           91 DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCCHHHHHHHHHH
Confidence                 3456677777777777644

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.94  E-value=0.24  Score=43.99  Aligned_cols=79  Identities=13%  Similarity=-0.044  Sum_probs=62.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC----------CH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          154 MQGNMRRGRNKEALEFVKRLIDIEPN----------EV------------EWKLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       154 a~~~~~~g~~~eAi~~l~kai~l~P~----------~~------------~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                      |......|+.++|.+.+++++.+--.          ..            .+...++.++...|++++|+..+++++..+
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~  201 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH  201 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            33444578999999999999987522          11            222345677889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhchhhc
Q 026642          212 PLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       212 P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      |.+..+|..+..++.+.++..
T Consensus       202 P~~E~~~~~lm~al~~~Gr~~  222 (388)
T 2ff4_A          202 PYREPLWTQLITAYYLSDRQS  222 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHH
Confidence            999999999999988877654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.78  E-value=0.17  Score=47.84  Aligned_cols=42  Identities=10%  Similarity=0.062  Sum_probs=33.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRL  173 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~ka  173 (235)
                      +++++|.+..     ..-++...|..+|..+.+.|+++.|+++|.++
T Consensus       666 ~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          666 GQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             TCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3445554443     34478899999999999999999999999885

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.67  E-value=0.7  Score=37.11  Aligned_cols=87  Identities=9%  Similarity=0.048  Sum_probs=68.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h---------------CCCCHH-HH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID--I---------------EPNEVE-WK  184 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~--l---------------~P~~~~-a~  184 (235)
                      .--.+++..+.-.+.     +-|...+.+.-..+|.+.++|..|+.+++++++  .               ||.+-+ .+
T Consensus        43 LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy  117 (242)
T 3kae_A           43 LYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE  117 (242)
T ss_dssp             HHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH
T ss_pred             hhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH
Confidence            344555666655543     347788888889999999999999999999992  2               244554 45


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          185 LLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       185 ~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      ..+|.++...|+.++|+.++......+|-.
T Consensus       118 ~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf  147 (242)
T 3kae_A          118 SLLGDLCTLSGYREEGIGHYVRSFGKSFLF  147 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence            678999999999999999999999998875

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.89  E-value=0.64  Score=42.90  Aligned_cols=67  Identities=10%  Similarity=0.021  Sum_probs=58.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL  193 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~  193 (235)
                      ..++.|..+|++|+..+|++...+..||.+....|+.-+|+-+|-+++.-....+.++.++..++..
T Consensus       166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            3468999999999999999999999999999999999999999999998777777777777766654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.56  E-value=0.16  Score=47.09  Aligned_cols=67  Identities=13%  Similarity=0.253  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-------VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-------~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      .+..+..+.+.|+..+.|++|.....++.  .|..       ..+++.+|+++..+++|.+|.+++..++..-|.+
T Consensus       230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            34578888999999999999999999995  3432       5677889999999999999999999999988765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.40  E-value=2.2  Score=42.92  Aligned_cols=94  Identities=14%  Similarity=0.076  Sum_probs=71.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHH
Q 026642          117 ENLKEKRDALMGKSEVEEMFEKLLEK----EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE--PNEVEWKLLQALC  190 (235)
Q Consensus       117 ~~~~e~~~~~~~~~eA~~~~e~aL~~----~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~--P~~~~a~~~lA~~  190 (235)
                      ..+....-..+..++|.+.|++.-+.    -.-|...|..+...|++.|+.++|.+.+++..+..  | |...|..+-.+
T Consensus       131 naLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~g  209 (1134)
T 3spa_A          131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQC  209 (1134)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHH
Confidence            34555666677789999988664321    23368899999999999999999999999988743  4 46667777778


Q ss_pred             HHHcCC-HHHHHHHHHHHHHHC
Q 026642          191 YELMGK-LSTAKRLFKDILKER  211 (235)
Q Consensus       191 ~~~~g~-~~~A~~~l~kaL~~~  211 (235)
                      +...|+ .++|.+.|++..+..
T Consensus       210 lcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          210 MGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHhCCCcHHHHHHHHHHHHHcC
Confidence            888887 478889999888754

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.66  E-value=4.1  Score=36.63  Aligned_cols=92  Identities=12%  Similarity=0.152  Sum_probs=69.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhC--C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCH----HHHH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKE--P----RNVEALKVVMQGNMRRGRNKEALEFVKRLID---IEPNEV----EWKL  185 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~--P----~~~~a~~~la~~~~~~g~~~eAi~~l~kai~---l~P~~~----~a~~  185 (235)
                      +..-..+.+++.+|...+.+....-  .    .-.+.+....++|...++|..|...+.++-.   -.+..+    .++.
T Consensus       143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~  222 (445)
T 4b4t_P          143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN  222 (445)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence            3344445677999999998876431  1    1257788889999999999999999998742   233333    4566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642          186 LQALCYELMGKLSTAKRLFKDILKE  210 (235)
Q Consensus       186 ~lA~~~~~~g~~~~A~~~l~kaL~~  210 (235)
                      ..|.++...++|.+|..+|..++..
T Consensus       223 ~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          223 LLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            7899999999999999999998764

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.02  E-value=0.78  Score=41.18  Aligned_cols=64  Identities=9%  Similarity=-0.032  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN--E-VEWKLLQALCYELMGKLSTAKRLFKDILKE  210 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~--~-~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~  210 (235)
                      ..++..+|..|.+.|++++|.++|.++.+....  . .+.++...+++...|++..+...++++-..
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            357888999999999999999999998875432  2 577888888888999999999999888554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.86  E-value=2.3  Score=38.11  Aligned_cols=90  Identities=12%  Similarity=0.128  Sum_probs=69.4

Q ss_pred             hcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCH----HHHHHHHHHHHHcC
Q 026642          125 ALMGKSEVEEMFEKLLEK---EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEP--NEV----EWKLLQALCYELMG  195 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~---~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P--~~~----~a~~~lA~~~~~~g  195 (235)
                      +.+++++|.+.|.++...   ..+-.+.+....++++..++|..|..+++++-.+..  .+.    ......|.++...+
T Consensus       143 ~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r  222 (429)
T 4b4t_R          143 QIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVR  222 (429)
T ss_dssp             HHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTS
T ss_pred             HcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            445567889999887764   345678999999999999999999999999876422  222    33445678888899


Q ss_pred             CHHHHHHHHHHHHHHCCCC
Q 026642          196 KLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~P~~  214 (235)
                      +|.+|...|-.++......
T Consensus       223 ~f~~Aa~~f~e~~~t~~~~  241 (429)
T 4b4t_R          223 NFKEAAKLLVDSLATFTSI  241 (429)
T ss_dssp             CHHHHHHHHHHHHHHSCCS
T ss_pred             hHHHHHHHHHHHhccCCcc
Confidence            9999999998887765443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=89.73  E-value=1.4  Score=41.73  Aligned_cols=80  Identities=14%  Similarity=0.231  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      ..++...+.+.... ..+.+....++...++.|+++.|..+++++-........+.+-+|.++...|+.++|...|+++.
T Consensus       268 ~~~~~~~~~~~~~~-~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          268 TDEQAKWRDDAIMR-SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             CHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhcccc-CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            34566666665543 34444455555667788999999999988766445678899999999999999999999999987


Q ss_pred             H
Q 026642          209 K  209 (235)
Q Consensus       209 ~  209 (235)
                      +
T Consensus       347 ~  347 (618)
T 1qsa_A          347 Q  347 (618)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.64  E-value=0.69  Score=43.55  Aligned_cols=48  Identities=8%  Similarity=-0.085  Sum_probs=39.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          155 QGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       155 ~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      .+....|++++|.+..+.     -++...|..+|..+...|+++.|+++|.++
T Consensus       660 ~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            345677888888877543     467899999999999999999999999985

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=89.50  E-value=1.5  Score=34.77  Aligned_cols=54  Identities=17%  Similarity=0.009  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      |++..+.   +.++.|+++.|.+..+.+     ++..-|..+|......|+++-|..+|+++
T Consensus         7 D~~~rF~---LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            7 DPHIRFD---LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             CHHHHHH---HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ChHHHHH---HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            4444444   346899999999998775     67889999999999999999999999875

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=88.90  E-value=2  Score=34.53  Aligned_cols=86  Identities=19%  Similarity=0.158  Sum_probs=62.8

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H---------
Q 026642          142 KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK--E---------  210 (235)
Q Consensus       142 ~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~--~---------  210 (235)
                      .-|++.+....++.++.-.|+|..++-.+.+     -+-....+..+.||....+|.+|+..++++++  .         
T Consensus        28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~  102 (242)
T 3kae_A           28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR  102 (242)
T ss_dssp             HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred             HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence            3556668888889999999999999877654     35688889999999999999999999999993  2         


Q ss_pred             ------CCCCHHHH-HHHHHHHhhchhhc
Q 026642          211 ------RPLLLRAL-HDLGRYVSMTLQIQ  232 (235)
Q Consensus       211 ------~P~~~~a~-~~l~~~~~~~~~~~  232 (235)
                            ||.+-+.+ .-+|.++.+.++.+
T Consensus       103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~  131 (242)
T 3kae_A          103 IQEMFVDPGDEEFFESLLGDLCTLSGYRE  131 (242)
T ss_dssp             HHTTSCCTTCHHHHHHHHHHHHHHTTCHH
T ss_pred             cceeeeccchHHHHHHHHHHHHHHhcCHH
Confidence                  34554443 45566666666543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=88.88  E-value=3.5  Score=41.52  Aligned_cols=83  Identities=8%  Similarity=-0.047  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHH
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDI----EPNEVEWKLLQALCYELMGKLSTAKRLFKDILKE--RPLLLRALHD  220 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l----~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~--~P~~~~a~~~  220 (235)
                      ...+..+...|++.|+.++|.+.+++..+.    -.-+...|+.+-..|...|+.++|.+.|++..+.  .|+ .-.|-.
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-vvTYnt  205 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-LLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-HHHHHH
Confidence            346888999999999999999999775432    2335888999999999999999999999999774  454 555655


Q ss_pred             HHHHHhhchh
Q 026642          221 LGRYVSMTLQ  230 (235)
Q Consensus       221 l~~~~~~~~~  230 (235)
                      +...+.+.++
T Consensus       206 LI~glcK~G~  215 (1134)
T 3spa_A          206 ALQCMGRQDQ  215 (1134)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHhCCC
Confidence            6556666543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.67  E-value=4.6  Score=36.33  Aligned_cols=61  Identities=23%  Similarity=0.187  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDI-E-PN----EVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l-~-P~----~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      .....|+.+|...|++.+|.+.+..+..- . ..    -.+.+..-.++|...|++.+|...++++.
T Consensus       138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~  204 (445)
T 4b4t_P          138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL  204 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45578899999999999999999998642 1 11    14677788899999999999999999974

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=86.37  E-value=2.2  Score=40.64  Aligned_cols=51  Identities=29%  Similarity=0.328  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL  197 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~  197 (235)
                      .+.....|+..+..|+|.-|.+..+.++..+|++.+++..+|.+|.++|.-
T Consensus       449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~  499 (658)
T 2cfu_A          449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ  499 (658)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence            456677788888999999999999999999999999999999999888853

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=86.15  E-value=1.9  Score=38.48  Aligned_cols=61  Identities=18%  Similarity=0.226  Sum_probs=50.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          151 KVVMQGNMRRGRNKEALEFVKRLIDIEP--NE----VEWKLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       151 ~~la~~~~~~g~~~eAi~~l~kai~l~P--~~----~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                      ..+|.+|+..|+|.+|.+.+.++.+.-.  ++    .+.+..-.++|...|++.++...|.++....
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~  169 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA  169 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence            3789999999999999999999887321  11    4667778899999999999999999986543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=85.62  E-value=9  Score=34.10  Aligned_cols=91  Identities=11%  Similarity=-0.077  Sum_probs=66.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCH----HHHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEK----E--PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIE---PNEV----EWKLLQA  188 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~----~--P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~---P~~~----~a~~~lA  188 (235)
                      -..+.+++.+|.+.+.+.++.    |  ..-.+.+..-.++|...|++..+...|.++....   +.++    .....-|
T Consensus       108 l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~G  187 (394)
T 3txn_A          108 LYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSG  187 (394)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhh
Confidence            334566789998888887763    1  1234667777888999999999999999987643   1222    3344468


Q ss_pred             HHHH-HcCCHHHHHHHHHHHHHHCC
Q 026642          189 LCYE-LMGKLSTAKRLFKDILKERP  212 (235)
Q Consensus       189 ~~~~-~~g~~~~A~~~l~kaL~~~P  212 (235)
                      .++. ..++|.+|...|-++++...
T Consensus       188 i~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          188 ILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccCHHHHHHHHHHHHhccc
Confidence            8888 89999999999998876443

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=83.42  E-value=2.7  Score=38.26  Aligned_cols=86  Identities=15%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHh--CCCCH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----------CCHH
Q 026642          129 KSEVEEMFEKLLEK--EPRNV--------------EALKVVMQGNMRRGRNKEALEFVKRLIDIEP----------NEVE  182 (235)
Q Consensus       129 ~~eA~~~~e~aL~~--~P~~~--------------~a~~~la~~~~~~g~~~eAi~~l~kai~l~P----------~~~~  182 (235)
                      .+++.+.+.++...  +..++              -....+-.+|++.|+..-+...+..+-....          ..+.
T Consensus       142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~  221 (455)
T 3t5v_B          142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIE  221 (455)
T ss_dssp             HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEe
Confidence            46677777777664  11111              1234456789999999888777755433322          1357


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCC
Q 026642          183 WKLLQALCYELMGKLSTAKRLFKDILKE-RPLL  214 (235)
Q Consensus       183 a~~~lA~~~~~~g~~~~A~~~l~kaL~~-~P~~  214 (235)
                      +++.+|+++...++|.+|.+.+..|+.. .|..
T Consensus       222 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          222 YRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             eeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            8889999999999999999999999998 6654

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=82.99  E-value=2.9  Score=33.65  Aligned_cols=52  Identities=15%  Similarity=0.042  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH-----HHHHHHHHcCCHH
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKL-----LQALCYELMGKLS  198 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~-----~lA~~~~~~g~~~  198 (235)
                      +...+.+|++++.+++|.+|.+++..|++..|.......     .+--+-.-+|+..
T Consensus        14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP   70 (203)
T 3t5x_A           14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP   70 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence            567788899999999999999999999998886543222     2233445667754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.40  E-value=9.2  Score=38.51  Aligned_cols=76  Identities=8%  Similarity=-0.164  Sum_probs=57.8

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------------------CCCCHHHHHHHHHHHHHcC
Q 026642          139 LLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDI-----------------------EPNEVEWKLLQALCYELMG  195 (235)
Q Consensus       139 aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l-----------------------~P~~~~a~~~lA~~~~~~g  195 (235)
                      .+..-+.++-..+.+|++++..|++++|.++++++-.-                       ....+.+|.....++...|
T Consensus       834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~  913 (1139)
T 4fhn_B          834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES  913 (1139)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred             HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence            34445677777889999999999999999999876320                       1112456677778889999


Q ss_pred             CHHHHHHHHHHHHHHCCCC
Q 026642          196 KLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       196 ~~~~A~~~l~kaL~~~P~~  214 (235)
                      -++.+++..+.+++..+.+
T Consensus       914 ~~~~vi~fa~lAi~~~~~~  932 (1139)
T 4fhn_B          914 AYIDALEFSLLADASKETD  932 (1139)
T ss_dssp             CCHHHHHHHHHHHHHCCSC
T ss_pred             CHHHHHHHHHHHHHhccCC
Confidence            9999999999999876544

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=82.07  E-value=1.9  Score=29.75  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID  175 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~  175 (235)
                      .++|++...++++.               -+.|+|++|+.+|.++++
T Consensus        16 ~~~Ai~lv~~Ave~---------------D~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           16 EEMARKYAINAVKA---------------DKEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHH
Confidence            35667777666554               356777777666666554

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=81.52  E-value=2.1  Score=29.51  Aligned_cols=31  Identities=13%  Similarity=0.280  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLID  175 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~  175 (235)
                      ++|++...+|++.               -+.|+|++|+.+|.++++
T Consensus         9 ~~Ai~lv~~Ave~---------------D~~g~y~eAl~lY~~aie   39 (83)
T 2v6y_A            9 DMARKYAILAVKA---------------DKEGKVEDAITYYKKAIE   39 (83)
T ss_dssp             HHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHH
Confidence            4566666666554               356777776666666554

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=81.45  E-value=6  Score=27.72  Aligned_cols=56  Identities=13%  Similarity=0.143  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLI-------DIEPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai-------~l~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      .+.|+..+.++++.|               ..|+|++|+.+|..++       +..++...-......+-.++.+-++
T Consensus        12 l~~Ai~lv~~Ave~D---------------~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~   74 (93)
T 1wfd_A           12 STAAVAVLKRAVELD---------------AESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN   74 (93)
T ss_dssp             HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH---------------HhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence            356777777776653               4566666555555544       4455544333344455444444433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=80.06  E-value=15  Score=28.32  Aligned_cols=64  Identities=13%  Similarity=0.122  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                      +.-...-.....+|+-|+-.+.+..++.-++-+++..+.+|.+|...|+..+|-+.+.++-+.-
T Consensus        92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            3333334456778888888888888777667779999999999999999999999998887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.004
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-04
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	8e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 8e-08
 Identities = 22/114 (19%), Positives = 44/114 (38%)

Query: 110 PGKMRASENLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEF 169
           P    A  NL          +E E+ +   L   P + ++L  +      +G  +EA+  
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327

Query: 170 VKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223
            ++ +++ P         A   +  GKL  A   +K+ ++  P    A  ++G 
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 16/93 (17%), Positives = 33/93 (35%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC 190
              + + + +E +P   +A   +      +G   EA +     + + P   +     A  
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314

Query: 191 YELMGKLSTAKRLFKDILKERPLLLRALHDLGR 223
               G +  A RL++  L+  P    A  +L  
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 15/67 (22%), Positives = 26/67 (38%)

Query: 157 NMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLR 216
             + G  + A     +L   EP+     LL +  +    +L  +       +K+ PLL  
Sbjct: 9   EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE 68

Query: 217 ALHDLGR 223
           A  +LG 
Sbjct: 69  AYSNLGN 75

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 12/64 (18%), Positives = 20/64 (31%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC 190
             E    +L  +EP N   L ++   + +  R   +  F    I   P   E        
Sbjct: 17  AAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNV 76

Query: 191 YELM 194
           Y+  
Sbjct: 77  YKER 80

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 6e-05
 Identities = 15/65 (23%), Positives = 24/65 (36%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC 190
           E   ++ K LE  P    A   +     ++G+ +EAL   K  I I P   +        
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

Query: 191 YELMG 195
            + M 
Sbjct: 383 LKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 131 EVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC 190
                + + L   P +      +      +G    A++  +R I+++P+  +     A  
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280

Query: 191 YELMGKLSTAKRLFKDILKERP-------LLLRALHDLGRY 224
            +  G ++ A+  +   L+  P        L     + G  
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 43.9 bits (103), Expect = 6e-06
 Identities = 13/78 (16%), Positives = 23/78 (29%)

Query: 158 MRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRA 217
           +  G+ ++ALE +   I   P +   +        + G    A       +K  P  L  
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 218 LHDLGRYVSMTLQIQSLF 235
              L   V      +   
Sbjct: 67  ASQLRHLVKAAQARKDFA 84

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 14/105 (13%), Positives = 35/105 (33%), Gaps = 3/105 (2%)

Query: 123 RDAL-MGK-SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE 180
           ++AL  G+  +  E+  + ++  P++       ++     G  + A E + + I + P  
Sbjct: 4   KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 63

Query: 181 VE-WKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRY 224
           +     L+ L      +   A+      +      L         
Sbjct: 64  LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNL 108

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 13/101 (12%), Positives = 35/101 (34%), Gaps = 3/101 (2%)

Query: 115 ASENLKEKRDALMGKSEVEE---MFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVK 171
           +++ LKE+ + L    +  E    + + + + P             ++  + ++AL   +
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 172 RLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERP 212
           R ++++   V+       C   M     A    +       
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.9 bits (83), Expect = 8e-04
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 134 EMFEKLLEKEPRN-VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE 192
           ++   + ++      E L  +  G  + G    A  +V  L + E N  +   L+++  +
Sbjct: 59  KILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVED 118

Query: 193 LMGK 196
            + K
Sbjct: 119 KIQK 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.72
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.67
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.66
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.65
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.62
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.61
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.58
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.58
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.57
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.57
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.55
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.54
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.53
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.52
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.52
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.52
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.52
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.49
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.48
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.43
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.38
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.21
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.15
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.15
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.09
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.09
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.06
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.04
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.02
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.01
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.98
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.97
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.94
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.92
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.89
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.82
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.75
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.75
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.74
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.7
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.66
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.64
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.53
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.48
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.33
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.14
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.13
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.05
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.73
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	89.52
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	84.83
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	84.02

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.6e-18  Score=124.86  Aligned_cols=104  Identities=14%  Similarity=0.158  Sum_probs=99.0

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      ...+++++|+..|+++++.+|+++.+|..+|.+|...|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..
T Consensus        14 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~   93 (117)
T d1elwa_          14 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT   93 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHH
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          204 FKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      |+++++.+|++..++.+++.+..|
T Consensus        94 ~~~a~~~~p~~~~~~~~l~~l~~r  117 (117)
T d1elwa_          94 YEEGLKHEANNPQLKEGLQNMEAR  117 (117)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHhCc
Confidence            999999999999999999877543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.7e-16  Score=123.36  Aligned_cols=103  Identities=16%  Similarity=0.113  Sum_probs=97.2

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      ...+++++|+..|+++++.+|+++.+|..+|.+++..|++++|+.+|+++++++|++..+|..+|.++..+|++++|++.
T Consensus        21 ~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~  100 (159)
T d1a17a_          21 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD  100 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHh
Q 026642          204 FKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       204 l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      |+++++++|++..++..++.+..
T Consensus       101 ~~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_         101 YETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHH
Confidence            99999999999988877766643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=8.4e-17  Score=127.64  Aligned_cols=94  Identities=10%  Similarity=0.070  Sum_probs=88.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ......+++++|+..|+++++.+|+++.+|..+|.+|.+.|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|
T Consensus        12 n~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A   91 (201)
T d2c2la1          12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEA   91 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            34445678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCC
Q 026642          201 KRLFKDILKERPLL  214 (235)
Q Consensus       201 ~~~l~kaL~~~P~~  214 (235)
                      +..|+++++++|++
T Consensus        92 ~~~~~~al~l~p~~  105 (201)
T d2c2la1          92 IANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCccc
Confidence            99999999998865

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.1e-15  Score=125.31  Aligned_cols=109  Identities=14%  Similarity=0.023  Sum_probs=100.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      .....+++++|++.|+++++.+|+++++|..+|.+|...|++++|+++|+++++++|+++.++..+|.+|..+|++++|+
T Consensus        46 ~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  125 (259)
T d1xnfa_          46 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ  125 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHH
Confidence            33446679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          202 RLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       202 ~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +.|+++++.+|++...+..+++.+.+..+
T Consensus       126 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_         126 DDLLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence            99999999999998888777777666544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.3e-16  Score=117.28  Aligned_cols=105  Identities=10%  Similarity=0.030  Sum_probs=93.6

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG---RNKEALEFVKRLIDIEPNE--VEWKLLQALCYELMGKLS  198 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g---~~~eAi~~l~kai~l~P~~--~~a~~~lA~~~~~~g~~~  198 (235)
                      ...+++++|++.|+++++.+|+++++++++|.++++.+   ++++|+..|+++++.+|++  ..+++++|.+|..+|+++
T Consensus        10 ~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~   89 (122)
T d1nzna_          10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   89 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhH
Confidence            33445899999999999999999999999999998754   5567999999999999866  458999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHhhc
Q 026642          199 TAKRLFKDILKERPLLLRALHDLGRYVSMT  228 (235)
Q Consensus       199 ~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~  228 (235)
                      +|+++|+++|+.+|++..++..+..+..+.
T Consensus        90 ~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          90 KALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            999999999999999999998888877654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.62  E-value=2.6e-15  Score=115.86  Aligned_cols=99  Identities=15%  Similarity=0.135  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR----------GRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK--  196 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~----------g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~--  196 (235)
                      +++|+..|+++++.+|++++++..+|.++...          +.+++|++.|+++++++|+++.+|+++|.+|..+|+  
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~   92 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   92 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccch
Confidence            89999999999999999999999999999854          556899999999999999999999999999988764  


Q ss_pred             ---------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          197 ---------LSTAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       197 ---------~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                               |++|++.|+++++++|++..++.++++....
T Consensus        93 ~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          93 PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             hhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence                     7999999999999999999999999987543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.1e-15  Score=126.48  Aligned_cols=108  Identities=17%  Similarity=0.242  Sum_probs=88.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642          123 RDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR  202 (235)
Q Consensus       123 ~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~  202 (235)
                      ....+++++|++.+++++...|.+...+..++.++...|++++|+++|+++++++|+++.+++.+|.+|..+|++++|++
T Consensus       281 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  360 (388)
T d1w3ba_         281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM  360 (388)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            33445567777777777777777777777777778888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          203 LFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       203 ~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      .|+++++++|++..+|.++|.+|.+.+|
T Consensus       361 ~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         361 HYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            8888888888888888888888877664

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.59  E-value=7.5e-15  Score=108.10  Aligned_cols=88  Identities=16%  Similarity=0.132  Sum_probs=81.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ......+++++|+..|+++++.+|+++++|..+|.++.+.|++++|+.+|+++++++|+++.+|..+|.+|...|++++|
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A  103 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA  103 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHH
Confidence            34455677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 026642          201 KRLFKDIL  208 (235)
Q Consensus       201 ~~~l~kaL  208 (235)
                      ++.+++.|
T Consensus       104 ~~~l~~~l  111 (112)
T d1hxia_         104 LASLRAWL  111 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999876

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.3e-14  Score=111.94  Aligned_cols=104  Identities=10%  Similarity=0.024  Sum_probs=94.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRN---------------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALC  190 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~---------------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~  190 (235)
                      .+++++|+..|+++++..|.+               ..++.++|.+|++.|+|++|+.+++++|+++|+++.+++.+|.+
T Consensus        26 ~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  105 (170)
T d1p5qa1          26 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA  105 (170)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHH
Confidence            567999999999999987754               25677899999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          191 YELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       191 ~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      |..+|++++|+..|+++++++|++..+...++.+..+..
T Consensus       106 ~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1         106 HLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988888865543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.58  E-value=3.5e-14  Score=109.93  Aligned_cols=107  Identities=12%  Similarity=0.059  Sum_probs=96.0

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRN----------------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQA  188 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~----------------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA  188 (235)
                      ..+++.+|+..|+++++.-+..                ...+.++|.+|.+.|++++|+++++++++++|++..+|+.+|
T Consensus        29 ~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g  108 (153)
T d2fbna1          29 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLG  108 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhH
Confidence            3567999999999999864422                246778999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchhh
Q 026642          189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQI  231 (235)
Q Consensus       189 ~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~  231 (235)
                      .+|..+|++++|+..|+++++++|++..+...+..+..+..+.
T Consensus       109 ~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1         109 VANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888776554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=1.7e-14  Score=113.03  Aligned_cols=105  Identities=10%  Similarity=0.062  Sum_probs=93.6

Q ss_pred             cCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 026642          126 LMGKSEVEEMFEKLLE----------------KEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQAL  189 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~----------------~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~  189 (235)
                      .+++++|++.|+++++                .+|.+..++..+|.+|.+.|+|++|+..++++++++|+++.+|+.+|.
T Consensus        40 ~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~  119 (169)
T d1ihga1          40 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ  119 (169)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHH
Confidence            4457778777777764                356778889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          190 CYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       190 ~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +|..+|++++|+..|+++++++|++..++..+..++.+...
T Consensus       120 ~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~  160 (169)
T d1ihga1         120 GWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  160 (169)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888888765433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.4e-14  Score=124.61  Aligned_cols=102  Identities=12%  Similarity=0.063  Sum_probs=73.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026642          128 GKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDI  207 (235)
Q Consensus       128 ~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~ka  207 (235)
                      ++++|++.++++++.+|++..+|..+|.++...|++++|+++++++++++|++..+|..+|.++...|++++|++.++++
T Consensus        93 ~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~a  172 (315)
T d2h6fa1          93 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL  172 (315)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            46777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHCCCCHHHHHHHHHHHhhch
Q 026642          208 LKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       208 L~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      ++++|++..+|.+++.++.+.+
T Consensus       173 l~~~p~n~~a~~~r~~~l~~~~  194 (315)
T d2h6fa1         173 LKEDVRNNSVWNQRYFVISNTT  194 (315)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHCCccHHHHHHHHHHHHHcc
Confidence            7777777777777776665543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=9.1e-15  Score=119.67  Aligned_cols=104  Identities=14%  Similarity=0.069  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEK----EPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       129 ~~eA~~~~e~aL~~----~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      .+.|+..+++++..    ++..+++++.+|.+|.+.|++++|+++|+++++++|+++.+|+.+|.+|..+|++++|++.|
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~   94 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF   94 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence            35667777788764    34566799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          205 KDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +++++.+|++..++.++|.++...++..
T Consensus        95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~  122 (259)
T d1xnfa_          95 DSVLELDPTYNYAHLNRGIALYYGGRDK  122 (259)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHhhhhhhHHHHHHHHHHHhhHH
Confidence            9999999999999999999998887643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.3e-14  Score=114.21  Aligned_cols=106  Identities=10%  Similarity=-0.041  Sum_probs=94.5

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      ...+++++|++.|+++   .+.++.+|..+|.+|...|++++|+++|+++|++||+++.+|+++|.+|..+|++++|++.
T Consensus        16 ~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~   92 (192)
T d1hh8a_          16 ADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD   92 (192)
T ss_dssp             HHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHH
Confidence            3456689999999864   5678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCC----------------HHHHHHHHHHHhhchhhc
Q 026642          204 FKDILKERPLL----------------LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       204 l~kaL~~~P~~----------------~~a~~~l~~~~~~~~~~~  232 (235)
                      |++++...+.+                ..+++++|.++.+.++..
T Consensus        93 ~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~  137 (192)
T d1hh8a_          93 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK  137 (192)
T ss_dssp             HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHH
Confidence            99999876654                477899999988877644

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=2e-14  Score=113.53  Aligned_cols=88  Identities=19%  Similarity=0.102  Sum_probs=84.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYV  225 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~  225 (235)
                      +++.+...|..+++.|+|++|+..|+++++++|+++.+|.++|.+|...|++++|++.|+++++++|+++.+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchhhcc
Q 026642          226 SMTLQIQS  233 (235)
Q Consensus       226 ~~~~~~~~  233 (235)
                      .+.++..+
T Consensus        83 ~~l~~~~~   90 (201)
T d2c2la1          83 LEMESYDE   90 (201)
T ss_dssp             HHTTCHHH
T ss_pred             HHCCCHHH
Confidence            99887543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.9e-14  Score=122.72  Aligned_cols=109  Identities=10%  Similarity=0.037  Sum_probs=97.9

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRG-RNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKR  202 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g-~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~  202 (235)
                      ...+.+++|++.++++++.+|++.++|..+|.++...| ++++|+.+++++++++|++..+|..+|.++..+|++++|++
T Consensus        54 ~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~  133 (315)
T d2h6fa1          54 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE  133 (315)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             HhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHH
Confidence            34556799999999999999999999999999998876 48999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          203 LFKDILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       203 ~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      .++++++++|++..+|.++|.++.+.++.+
T Consensus       134 ~~~kal~~dp~n~~a~~~~~~~~~~~~~~~  163 (315)
T d2h6fa1         134 FIADILNQDAKNYHAWQHRQWVIQEFKLWD  163 (315)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred             HHhhhhhhhhcchHHHHHHHHHHHHHHhhH
Confidence            999999999999999999999988777644

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.7e-13  Score=115.45  Aligned_cols=104  Identities=14%  Similarity=0.089  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPR--NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~--~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      +++|++.|+++++.+|+  ++.++..+|.++...|++++|+.+|+++++.+|+++.+|..+|.+|..+|++++|++.|++
T Consensus       152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  231 (323)
T d1fcha_         152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR  231 (323)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHH
Confidence            57788888888888776  4667778888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          207 ILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +++.+|++..+|+++|.+|.+.++.+
T Consensus       232 al~~~p~~~~a~~~lg~~~~~~g~~~  257 (323)
T d1fcha_         232 ALELQPGYIRSRYNLGISCINLGAHR  257 (323)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHCCCHH
Confidence            88888888888888888888776643

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2e-14  Score=121.38  Aligned_cols=99  Identities=11%  Similarity=0.078  Sum_probs=90.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      .......+++++|+..|+++++.+|+++++|..+|.++...|++++|+++|+++++++|+++.+++.+|.+|..+|++++
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  258 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE  258 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHH
Confidence            34445567899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCHHHH
Q 026642          200 AKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       200 A~~~l~kaL~~~P~~~~a~  218 (235)
                      |++.|+++++++|++..++
T Consensus       259 A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         259 AVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHhCCcChhhh
Confidence            9999999999999986543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.4e-14  Score=117.18  Aligned_cols=113  Identities=15%  Similarity=0.109  Sum_probs=105.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTA  200 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A  200 (235)
                      ......+++++|+..|+++++.+|++++++..+|.++...|++++|++.+++++...|.+...+..+|.++...|++++|
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  324 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHH
Confidence            34445667899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          201 KRLFKDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       201 ~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      ++.|+++++.+|++..+++++|.+|.+.++.++
T Consensus       325 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  357 (388)
T d1w3ba_         325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999999999998887543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.5e-14  Score=103.62  Aligned_cols=87  Identities=14%  Similarity=0.117  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      ++-+...|..+++.|+|++|+.+|+++|+++|+++.+|..+|.+|..+|++++|+..|+++++++|++..+|+++|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            34466789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhhcc
Q 026642          227 MTLQIQS  233 (235)
Q Consensus       227 ~~~~~~~  233 (235)
                      ..++.++
T Consensus        83 ~~~~~~~   89 (117)
T d1elwa_          83 FLNRFEE   89 (117)
T ss_dssp             HTTCHHH
T ss_pred             HccCHHH
Confidence            9887554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.52  E-value=6.5e-14  Score=102.92  Aligned_cols=86  Identities=13%  Similarity=-0.089  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      +.+..+|..+++.|++++|+.+|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|++..++.++|.+|..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            44577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhcc
Q 026642          228 TLQIQS  233 (235)
Q Consensus       228 ~~~~~~  233 (235)
                      .++..+
T Consensus        97 ~g~~~~  102 (112)
T d1hxia_          97 EHNANA  102 (112)
T ss_dssp             HHHHHH
T ss_pred             CCCHHH
Confidence            988654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.49  E-value=2.2e-13  Score=106.73  Aligned_cols=106  Identities=11%  Similarity=0.021  Sum_probs=93.1

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPR---------------NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQA  188 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~---------------~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA  188 (235)
                      ...+++++|+..|++++..-+.               ....+.++|.+|...|++++|+.+++++++++|++..+++.+|
T Consensus        26 ~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~  105 (168)
T d1kt1a1          26 FKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG  105 (168)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHH
Confidence            3366789999999999975332               2245677999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          189 LCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       189 ~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      .+|..+|++++|+..|+++++++|++..++..++.+..+..
T Consensus       106 ~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1         106 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988888865543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.8e-13  Score=105.90  Aligned_cols=86  Identities=12%  Similarity=0.096  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          148 EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       148 ~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      +.+...|..+++.|+|++|+.+|+++++++|+++.+|..+|.+|..+|++++|+..|+++++++|++..+|.++|.++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            45666899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chhhcc
Q 026642          228 TLQIQS  233 (235)
Q Consensus       228 ~~~~~~  233 (235)
                      .++..+
T Consensus        91 ~g~~~e   96 (159)
T d1a17a_          91 LGKFRA   96 (159)
T ss_dssp             TTCHHH
T ss_pred             cCCHHH
Confidence            887554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6e-13  Score=94.99  Aligned_cols=82  Identities=15%  Similarity=0.037  Sum_probs=74.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-------VEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRAL  218 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-------~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~  218 (235)
                      +++-.+.+|.++.+.|+|++|+.+|++++++.|++       .+++.++|.+|...|++++|++.|+++|+++|++..++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            45778899999999999999999999999986653       67899999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 026642          219 HDLGRYVSM  227 (235)
Q Consensus       219 ~~l~~~~~~  227 (235)
                      .+++.+...
T Consensus        84 ~Nl~~~~~~   92 (95)
T d1tjca_          84 GNLKYFEYI   92 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887553

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.8e-12  Score=97.12  Aligned_cols=100  Identities=13%  Similarity=0.112  Sum_probs=86.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHc
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEV-------EWKLLQALCYELM  194 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~-------~a~~~lA~~~~~~  194 (235)
                      .....+++++|+..|+++++.+|+++.++..+|.+|.+.|+|++|+++++++|+++|++.       .++..+|.++..+
T Consensus        13 ~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~   92 (128)
T d1elra_          13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKE   92 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHh
Confidence            334467799999999999999999999999999999999999999999999999998875       4566788889999


Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 026642          195 GKLSTAKRLFKDILKERPLLLRALHDLG  222 (235)
Q Consensus       195 g~~~~A~~~l~kaL~~~P~~~~a~~~l~  222 (235)
                      |++++|++.|++++..+++ ...+..+.
T Consensus        93 ~~~~~A~~~~~kal~~~~~-~~~~~~l~  119 (128)
T d1elra_          93 EKYKDAIHFYNKSLAEHRT-PDVLKKCQ  119 (128)
T ss_dssp             TCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence            9999999999999999875 44444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.8e-13  Score=101.66  Aligned_cols=83  Identities=11%  Similarity=0.116  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      +..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|+|++|++.++++++++|++..++..++.+|.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999998665555555544


Q ss_pred             hch
Q 026642          227 MTL  229 (235)
Q Consensus       227 ~~~  229 (235)
                      +.+
T Consensus        84 ~lg   86 (128)
T d1elra_          84 RIG   86 (128)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.5e-12  Score=101.42  Aligned_cols=112  Identities=12%  Similarity=-0.019  Sum_probs=95.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------H
Q 026642          118 NLKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE----------------V  181 (235)
Q Consensus       118 ~~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~----------------~  181 (235)
                      .+..-....+++++|++.|+++++.||+++.+|..+|.++.++|++++|++.|+++++..+.+                .
T Consensus        41 nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~  120 (192)
T d1hh8a_          41 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC  120 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHH
T ss_pred             HHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchH
Confidence            344444556789999999999999999999999999999999999999999999999876543                4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhch
Q 026642          182 EWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTL  229 (235)
Q Consensus       182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~  229 (235)
                      +.++++|.+|..+|++++|++.++++++.+|+........++....+.
T Consensus       121 e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~~  168 (192)
T d1hh8a_         121 EVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQ  168 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh
Confidence            778899999999999999999999999999987655666665554443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.21  E-value=4.8e-11  Score=91.83  Aligned_cols=90  Identities=12%  Similarity=-0.000  Sum_probs=78.4

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------CH
Q 026642          125 ALMGKSEVEEMFEKLLEKEPRN------------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN-----------EV  181 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~P~~------------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~-----------~~  181 (235)
                      ..+++++|++.|+++++++|+.            +.+|.++|.+|...|++++|++.+++++++.|.           ..
T Consensus        21 ~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  100 (156)
T d2hr2a1          21 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWI  100 (156)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhH
Confidence            3467999999999999988764            467999999999999999999999999987542           23


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 026642          182 EWKLLQALCYELMGKLSTAKRLFKDILKERPLL  214 (235)
Q Consensus       182 ~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~  214 (235)
                      .+++++|.+|..+|++++|++.|++++++.|+.
T Consensus       101 ~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1         101 SAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            468899999999999999999999999987755

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.5e-10  Score=90.42  Aligned_cols=86  Identities=17%  Similarity=0.115  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE---------------VEWKLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~---------------~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                      +..+...|..+++.|+|++|+.+|+++|+..|..               ...+.++|.||..+|+|++|+..++++++++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            5677789999999999999999999999998753               3557789999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhchhhc
Q 026642          212 PLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       212 P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      |+++.+++++|.+|...++..
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~  113 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFE  113 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHH
T ss_pred             ccchhhhHHHHHHHHHhhhHH
Confidence            999999999999999888754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=2.2e-10  Score=97.36  Aligned_cols=104  Identities=8%  Similarity=-0.010  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGR--NKEALEFVKRLIDIEPNEVEWK-LLQALCYELMGKLSTAKRLFK  205 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~--~~eAi~~l~kai~l~P~~~~a~-~~lA~~~~~~g~~~~A~~~l~  205 (235)
                      +++|+..++++++.+|++..+|..+|.++...++  +++|+.+++++++++|.+..++ ...|.++...|++++|++.++
T Consensus        89 ~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~  168 (334)
T d1dcea1          89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHH
Confidence            5789999999999999999999999999888765  8999999999999999998876 467899999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHhhchhhc
Q 026642          206 DILKERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       206 kaL~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      ++++.+|++..+|.++|.++.+.++..
T Consensus       169 ~~i~~~p~~~~a~~~l~~~~~~~~~~~  195 (334)
T d1dcea1         169 SLITRNFSNYSSWHYRSCLLPQLHPQP  195 (334)
T ss_dssp             TTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHhcCHH
Confidence            999999999999999999999887644

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.09  E-value=9.2e-11  Score=89.67  Aligned_cols=74  Identities=11%  Similarity=-0.077  Sum_probs=66.8

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 026642          157 NMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELM----------GKLSTAKRLFKDILKERPLLLRALHDLGRYVS  226 (235)
Q Consensus       157 ~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~----------g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~  226 (235)
                      +-+.+.|++|++.|+++++++|++++++.++|.++...          +++++|++.|+++++++|++..+|+++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            45677899999999999999999999999999999854          55689999999999999999999999999997


Q ss_pred             hchh
Q 026642          227 MTLQ  230 (235)
Q Consensus       227 ~~~~  230 (235)
                      ..+.
T Consensus        87 ~~g~   90 (145)
T d1zu2a1          87 SFAF   90 (145)
T ss_dssp             HHHH
T ss_pred             Hccc
Confidence            7653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.09  E-value=4.5e-10  Score=86.16  Aligned_cols=87  Identities=18%  Similarity=0.113  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE----------------VEWKLLQALCYELMGKLSTAKRLFKDILKE  210 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~----------------~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~  210 (235)
                      +..+...|..+++.|+|++|+..|+++++..+..                ...+.++|.+|..+|++++|++.++++|+.
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            4566778999999999999999999999876542                235678999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhchhhcc
Q 026642          211 RPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       211 ~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +|+++.+|+++|.++.+.++..+
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~  119 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEE  119 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHH
T ss_pred             cchhhhhhHHhHHHHHHcCCHHH
Confidence            99999999999999999887543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.2e-10  Score=105.58  Aligned_cols=102  Identities=12%  Similarity=-0.005  Sum_probs=86.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026642          127 MGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKD  206 (235)
Q Consensus       127 ~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~k  206 (235)
                      ++.++|+..+++++..++  ..++..+|.++...|++++|+.+|+++++++|++..+++.+|.++...|++.+|+.+|.+
T Consensus       134 ~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r  211 (497)
T d1ya0a1         134 THTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR  211 (497)
T ss_dssp             ---------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            346778888888877765  478999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHhhchh
Q 026642          207 ILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       207 aL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      ++..+|.+..++.+|+.++.+...
T Consensus       212 al~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         212 SIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             HHhCCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999999876554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.3e-10  Score=79.22  Aligned_cols=74  Identities=16%  Similarity=0.148  Sum_probs=64.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 026642          122 KRDALMGKSEVEEMFEKLLEKEPRN-------VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELM  194 (235)
Q Consensus       122 ~~~~~~~~~eA~~~~e~aL~~~P~~-------~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~  194 (235)
                      .....+++++|+.+|+++++..|++       ++++..+|.++.+.|++++|+++|+++++++|+++.++.+++.+...+
T Consensus        14 ~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            3345677999999999999985543       789999999999999999999999999999999999999998876554


Q ss_pred             C
Q 026642          195 G  195 (235)
Q Consensus       195 g  195 (235)
                      +
T Consensus        94 ~   94 (95)
T d1tjca_          94 A   94 (95)
T ss_dssp             H
T ss_pred             C
Confidence            3

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.04  E-value=7.3e-10  Score=86.12  Aligned_cols=87  Identities=14%  Similarity=0.077  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPN---------------EVEWKLLQALCYELMGKLSTAKRLFKDILKER  211 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~---------------~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~  211 (235)
                      ++.+...|..+++.|+|++|+..|++++...+.               ....+.++|.||..+|++++|+..++++++++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            566888999999999999999999999975443               22456789999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhchhhcc
Q 026642          212 PLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       212 P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      |++..+|+.+|.++...++..+
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~  116 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFES  116 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999887543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.02  E-value=1.1e-09  Score=84.78  Aligned_cols=78  Identities=17%  Similarity=0.096  Sum_probs=71.7

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAK  201 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~  201 (235)
                      ...+++++|+..++++++.+|+++.+|..+|.+|...|++++|+++|+++++++|++..++..++.++...+++.++.
T Consensus        88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1          88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            345679999999999999999999999999999999999999999999999999999999999999988777766654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=3.5e-09  Score=89.68  Aligned_cols=102  Identities=10%  Similarity=0.038  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRR----------GRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGK--  196 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~----------g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~--  196 (235)
                      .++|++.++++++.+|++.++|..++.++...          |++++|+.+++++++.+|++..+|..+|.++...|+  
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~  124 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence            47999999999999999999998888776554          448999999999999999999999999999888875  


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHH-HHHHHHHhhchh
Q 026642          197 LSTAKRLFKDILKERPLLLRAL-HDLGRYVSMTLQ  230 (235)
Q Consensus       197 ~~~A~~~l~kaL~~~P~~~~a~-~~l~~~~~~~~~  230 (235)
                      +++|+..++++++.+|++..++ +..+.++...+.
T Consensus       125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  159 (334)
T d1dcea1         125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVA  159 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccc
Confidence            8999999999999999998876 466677765544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=4.4e-09  Score=83.11  Aligned_cols=94  Identities=15%  Similarity=0.062  Sum_probs=82.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 026642          121 EKRDALMGKSEVEEMFEKLLEKEPRNV----------------------EALKVVMQGNMRRGRNKEALEFVKRLIDIEP  178 (235)
Q Consensus       121 e~~~~~~~~~eA~~~~e~aL~~~P~~~----------------------~a~~~la~~~~~~g~~~eAi~~l~kai~l~P  178 (235)
                      ......+++++|++.|.++|+..+.+.                      +++..++.++...|++++|+.+++++++++|
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P   98 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP   98 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence            344556778999999999999876542                      6789999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHHCCCC
Q 026642          179 NEVEWKLLQALCYELMGKLSTAKRLFKDI-------LKERPLL  214 (235)
Q Consensus       179 ~~~~a~~~lA~~~~~~g~~~~A~~~l~ka-------L~~~P~~  214 (235)
                      .+..+|..++.+|...|++++|++.|+++       +..+|..
T Consensus        99 ~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          99 YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            99999999999999999999999999998       4466654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.2e-10  Score=85.31  Aligned_cols=83  Identities=7%  Similarity=-0.058  Sum_probs=73.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHH
Q 026642          151 KVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELM---GKLSTAKRLFKDILKERPLL--LRALHDLGRYV  225 (235)
Q Consensus       151 ~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~---g~~~~A~~~l~kaL~~~P~~--~~a~~~l~~~~  225 (235)
                      ..++..+...+++++|++.|++++.++|+++++++++|.++...   +++++|+..|+++++.+|++  ..+|+++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            35777888999999999999999999999999999999999864   45667999999999999876  56999999999


Q ss_pred             hhchhhcc
Q 026642          226 SMTLQIQS  233 (235)
Q Consensus       226 ~~~~~~~~  233 (235)
                      .+.++..+
T Consensus        83 ~~~g~~~~   90 (122)
T d1nzna_          83 YRLKEYEK   90 (122)
T ss_dssp             HHTTCHHH
T ss_pred             HHHhhhHH
Confidence            99988653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.94  E-value=2.2e-10  Score=96.30  Aligned_cols=107  Identities=7%  Similarity=-0.100  Sum_probs=78.7

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRL  203 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~  203 (235)
                      ...+++++|++.|+++++.+|+|++++..++.+|+..|++++|++.|+++++++|++..++..++.++...++.+++...
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~   86 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   86 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence            34567999999999999999999999999999999999999999999999999999776666666666655555555444


Q ss_pred             HHHH-HHHCCCCHHHHHHHHHHHhhchh
Q 026642          204 FKDI-LKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       204 l~ka-L~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +.+. +..+|.....+...+..+.+.++
T Consensus        87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd  114 (264)
T d1zbpa1          87 AATAKVLGENEELTKSLVSFNLSMVSQD  114 (264)
T ss_dssp             CCCEECCCSCHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhcccCchHHHHHHHHHHHHHhCCC
Confidence            4332 22234334444444444444433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.3e-10  Score=103.78  Aligned_cols=102  Identities=5%  Similarity=-0.104  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDIL  208 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL  208 (235)
                      +++|+..+++++..+|++..++..+|..+.+.|++++|+..+++++..++  ..+++.+|.++.+.|++++|+.+|++++
T Consensus       102 Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~  179 (497)
T d1ya0a1         102 YTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAA  179 (497)
T ss_dssp             HHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            67888888888889999999999999999999999999999999998875  4788899999999999999999999999


Q ss_pred             HHCCCCHHHHHHHHHHHhhchhhc
Q 026642          209 KERPLLLRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       209 ~~~P~~~~a~~~l~~~~~~~~~~~  232 (235)
                      +++|++..+|+++|.++...++..
T Consensus       180 ~l~P~~~~~~~~Lg~~~~~~~~~~  203 (497)
T d1ya0a1         180 QLVPSNGQPYNQLAILASSKGDHL  203 (497)
T ss_dssp             HHCTTBSHHHHHHHHHHHHTTCHH
T ss_pred             HHCCCchHHHHHHHHHHHHcCCHH
Confidence            999999999999999998887754

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.89  E-value=2e-09  Score=82.50  Aligned_cols=87  Identities=14%  Similarity=-0.010  Sum_probs=73.1

Q ss_pred             HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 026642          147 VEALKVV--MQGNMRRGRNKEALEFVKRLIDIEPNE------------VEWKLLQALCYELMGKLSTAKRLFKDILKERP  212 (235)
Q Consensus       147 ~~a~~~l--a~~~~~~g~~~eAi~~l~kai~l~P~~------------~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P  212 (235)
                      ++++..+  |..++..|+|++|+..|+++++++|+.            ...|.++|.+|..+|++++|+..+++++++.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3455555  778899999999999999999998874            35788999999999999999999999998765


Q ss_pred             C-----------CHHHHHHHHHHHhhchhhcc
Q 026642          213 L-----------LLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       213 ~-----------~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +           ...+++++|.+|.+.++.++
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~ee  118 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAE  118 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHH
Confidence            3           24578999999999887654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.82  E-value=6.1e-09  Score=87.28  Aligned_cols=76  Identities=17%  Similarity=0.219  Sum_probs=69.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          155 QGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       155 ~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +-.+++|++++|+..|+++++.+|+++.++..+|.+|...|++++|++.|+++++++|++..++..++.++.....
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~   79 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA   79 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc
Confidence            4456789999999999999999999999999999999999999999999999999999999998888877654443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.75  E-value=4e-08  Score=77.39  Aligned_cols=87  Identities=14%  Similarity=-0.021  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 026642          147 VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE----------------------VEWKLLQALCYELMGKLSTAKRLF  204 (235)
Q Consensus       147 ~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~----------------------~~a~~~lA~~~~~~g~~~~A~~~l  204 (235)
                      .+++...|......|++++|++.|.+++++.+++                      ..++..+|.++...|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            4678889999999999999999999999997753                      256788999999999999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhhchhhcc
Q 026642          205 KDILKERPLLLRALHDLGRYVSMTLQIQS  233 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~~~~~~~  233 (235)
                      +++++.+|.+..+|..++.++.+.++..+
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~e  119 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSD  119 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHH
Confidence            99999999999999999999999887543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=7.5e-08  Score=71.51  Aligned_cols=82  Identities=9%  Similarity=0.035  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 026642          146 NVEALKVVMQGNMRRGR---NKEALEFVKRLIDIEPNEV-EWKLLQALCYELMGKLSTAKRLFKDILKERPLLLRALHDL  221 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~---~~eAi~~l~kai~l~P~~~-~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~~~a~~~l  221 (235)
                      .++..+.+|+.+.+..+   .++|+..++++++.+|.+. +.++.+|.+|+.+|+|++|.++++++|+.+|+|..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            47899999999997654   5689999999999999875 7999999999999999999999999999999998887666


Q ss_pred             HHHHhh
Q 026642          222 GRYVSM  227 (235)
Q Consensus       222 ~~~~~~  227 (235)
                      -++..+
T Consensus       114 ~~Ie~~  119 (124)
T d2pqrb1         114 SMVEDK  119 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=1.7e-08  Score=84.27  Aligned_cols=108  Identities=9%  Similarity=-0.016  Sum_probs=82.4

Q ss_pred             hcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHH
Q 026642          125 ALMGKSEVEEMFEKLLEKE------PRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYE  192 (235)
Q Consensus       125 ~~~~~~eA~~~~e~aL~~~------P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~  192 (235)
                      ..+++++|++.|+++++..      +..+..|..+|.+|.+.|++++|+++|++++++.+..      ..++..+|.+|.
T Consensus        49 ~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  128 (290)
T d1qqea_          49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (290)
T ss_dssp             HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHh
Confidence            4566889999999988852      2334678888999999999999999999988876554      466777888876


Q ss_pred             H-cCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhchhhc
Q 026642          193 L-MGKLSTAKRLFKDILKERPLL------LRALHDLGRYVSMTLQIQ  232 (235)
Q Consensus       193 ~-~g~~~~A~~~l~kaL~~~P~~------~~a~~~l~~~~~~~~~~~  232 (235)
                      . .|++++|+..|++++++.+..      ..++.++|.++.+.++..
T Consensus       129 ~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~  175 (290)
T d1qqea_         129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (290)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHH
Confidence            5 589999999999888764432      566788888888777644

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=5.4e-08  Score=79.74  Aligned_cols=108  Identities=13%  Similarity=-0.005  Sum_probs=89.0

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRN-----VEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE------VEWKLLQALCYE  192 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~-----~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~------~~a~~~lA~~~~  192 (235)
                      ...+++++|++.++++++..|++     ..++..+|.+|...|++++|+..|++++++.+..      ...+..++.++.
T Consensus        23 ~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  102 (366)
T d1hz4a_          23 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF  102 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            44567999999999999999987     4588899999999999999999999999875432      456778999999


Q ss_pred             HcCCHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHhhchhh
Q 026642          193 LMGKLSTAKRLFKDILKERPLL--------LRALHDLGRYVSMTLQI  231 (235)
Q Consensus       193 ~~g~~~~A~~~l~kaL~~~P~~--------~~a~~~l~~~~~~~~~~  231 (235)
                      ..|++++|...+.+++...+..        ...+..++.++...++.
T Consensus       103 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  149 (366)
T d1hz4a_         103 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL  149 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcch
Confidence            9999999999999998754321        45667788887776653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=1.3e-07  Score=78.79  Aligned_cols=107  Identities=7%  Similarity=-0.081  Sum_probs=86.4

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHH
Q 026642          124 DALMGKSEVEEMFEKLLEKEPRN------VEALKVVMQGNMR-RGRNKEALEFVKRLIDIEPN------EVEWKLLQALC  190 (235)
Q Consensus       124 ~~~~~~~eA~~~~e~aL~~~P~~------~~a~~~la~~~~~-~g~~~eAi~~l~kai~l~P~------~~~a~~~lA~~  190 (235)
                      ...+++++|++.|+++++..+++      ..++..+|.+|.. .|++++|+++|++++++.+.      ....+..+|.+
T Consensus        88 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~  167 (290)
T d1qqea_          88 KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL  167 (290)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Confidence            34667899999999999875554      6788889988866 59999999999999987432      24568889999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHhhchh
Q 026642          191 YELMGKLSTAKRLFKDILKERPLLL-------RALHDLGRYVSMTLQ  230 (235)
Q Consensus       191 ~~~~g~~~~A~~~l~kaL~~~P~~~-------~a~~~l~~~~~~~~~  230 (235)
                      |..+|+|++|++.|++++...+.+.       ..+...++++...++
T Consensus       168 ~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  214 (290)
T d1qqea_         168 KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD  214 (290)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999988772       445677777655554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=2.2e-07  Score=77.85  Aligned_cols=111  Identities=16%  Similarity=0.053  Sum_probs=80.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCH
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNV-EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYE-LMGKL  197 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~-~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~-~~g~~  197 (235)
                      ..-....+..++|+..|+++++..|.+. .+|..++....+.|++++|.+.|+++++..|.....+...|.... ..|+.
T Consensus       106 a~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~  185 (308)
T d2onda1         106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK  185 (308)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCH
Confidence            3334445567778888888887777664 367777777777788888888888888887777777777776544 35777


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHhhchh
Q 026642          198 STAKRLFKDILKERPLLLRALHDLGRYVSMTLQ  230 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~~~~  230 (235)
                      +.|.+.|+++++..|++...|...+....+.++
T Consensus       186 ~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~  218 (308)
T d2onda1         186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE  218 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC
Confidence            778888888888888877777777776665554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=1.1e-07  Score=77.73  Aligned_cols=87  Identities=14%  Similarity=0.066  Sum_probs=73.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----
Q 026642          145 RNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNE-----VEWKLLQALCYELMGKLSTAKRLFKDILKERPLL-----  214 (235)
Q Consensus       145 ~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~-----~~a~~~lA~~~~~~g~~~~A~~~l~kaL~~~P~~-----  214 (235)
                      ..+++....|.+++..|++++|++.++++++..|++     ..++..+|.+|...|++++|++.|+++++..+..     
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            346788888999999999999999999999999986     3577889999999999999999999999876543     


Q ss_pred             -HHHHHHHHHHHhhchhh
Q 026642          215 -LRALHDLGRYVSMTLQI  231 (235)
Q Consensus       215 -~~a~~~l~~~~~~~~~~  231 (235)
                       ..++.+++.++...++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~  107 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFL  107 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence             55667777777766653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=7.9e-07  Score=74.37  Aligned_cols=111  Identities=11%  Similarity=0.006  Sum_probs=91.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026642          119 LKEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMR-RGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKL  197 (235)
Q Consensus       119 ~~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~-~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~  197 (235)
                      +..-....++.++|++.|+++++..|.+...|...+..... .|+.+.|...|+++++.+|+++..|...+..+...|++
T Consensus       140 ~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~  219 (308)
T d2onda1         140 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED  219 (308)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCh
Confidence            33334444568999999999999999999999999987654 68999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCC----HHHHHHHHHHHhhch
Q 026642          198 STAKRLFKDILKERPLL----LRALHDLGRYVSMTL  229 (235)
Q Consensus       198 ~~A~~~l~kaL~~~P~~----~~a~~~l~~~~~~~~  229 (235)
                      +.|...|++++...|.+    ...|..........|
T Consensus       220 ~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G  255 (308)
T d2onda1         220 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG  255 (308)
T ss_dssp             HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcC
Confidence            99999999999987754    345555554444433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.33  E-value=1.3e-06  Score=64.62  Aligned_cols=65  Identities=15%  Similarity=0.205  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNV-EALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL  193 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~-~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~  193 (235)
                      .++++.+++++++.+|.+. +.|+.||..|.+.|+|++|.++++++++++|++..+...+-.+...
T Consensus        54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence            5789999999999999775 8999999999999999999999999999999999998887776543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.14  E-value=1.4e-05  Score=64.45  Aligned_cols=102  Identities=13%  Similarity=0.031  Sum_probs=79.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q 026642          120 KEKRDALMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMR----RGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL--  193 (235)
Q Consensus       120 ~e~~~~~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~--  193 (235)
                      .......+++++|+++|+++.+.  ++++++..||.+|..    ..++..|..+++++.+.+  ++.+...+|.++..  
T Consensus         9 G~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~~~~~~~   84 (265)
T d1ouva_           9 GAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQ   84 (265)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcccccccccc
Confidence            33444566789999999998775  688999999999988    678999999999987654  78888888888775  


Q ss_pred             --cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 026642          194 --MGKLSTAKRLFKDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       194 --~g~~~~A~~~l~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                        .++.++|...++++.+..  ...+...++..+..
T Consensus        85 ~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~  118 (265)
T d1ouva_          85 GVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD  118 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccC
Confidence              467888999999988765  45555666655543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.13  E-value=1.2e-05  Score=59.17  Aligned_cols=91  Identities=10%  Similarity=0.019  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 026642          129 KSEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL----MGKLSTAKRLF  204 (235)
Q Consensus       129 ~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~----~g~~~~A~~~l  204 (235)
                      +++|+++|+++.+.  +++.+...|+.  ....++++|+++|+++.+.  +++.+.+.+|.+|..    ..++++|.++|
T Consensus         9 ~~~A~~~~~kaa~~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~   82 (133)
T d1klxa_           9 LKKAIQYYVKACEL--NEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY   82 (133)
T ss_dssp             HHHHHHHHHHHHHT--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC--CChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence            56677777777665  34555555553  2345667777777777654  466777777776665    44567777777


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHhh
Q 026642          205 KDILKERPLLLRALHDLGRYVSM  227 (235)
Q Consensus       205 ~kaL~~~P~~~~a~~~l~~~~~~  227 (235)
                      +++.+.  +++.+.+.++.+|..
T Consensus        83 ~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          83 SKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHH
T ss_pred             hhhhcc--CcchHHHHHHHHHHc
Confidence            776654  356666777766654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.05  E-value=4.6e-05  Score=55.84  Aligned_cols=82  Identities=10%  Similarity=0.074  Sum_probs=72.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCH
Q 026642          126 LMGKSEVEEMFEKLLEKEPRNVEALKVVMQGNMR----RGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL----MGKL  197 (235)
Q Consensus       126 ~~~~~eA~~~~e~aL~~~P~~~~a~~~la~~~~~----~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~----~g~~  197 (235)
                      ..+.++|+.+|+++.+.  +++++...||.+|..    ..++++|+++|+++.+.  .++.+.+.+|.+|..    ..++
T Consensus        36 ~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~  111 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE  111 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             ccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCH
Confidence            34578999999998876  689999999999987    56899999999999886  589999999999987    5689


Q ss_pred             HHHHHHHHHHHHHC
Q 026642          198 STAKRLFKDILKER  211 (235)
Q Consensus       198 ~~A~~~l~kaL~~~  211 (235)
                      ++|+++|+++.+..
T Consensus       112 ~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         112 KQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCC
Confidence            99999999998765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.73  E-value=0.00051  Score=54.81  Aligned_cols=78  Identities=13%  Similarity=0.105  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYEL----MGKLSTAKRLFKDILKERPLLLRALHDL  221 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~----~g~~~~A~~~l~kaL~~~P~~~~a~~~l  221 (235)
                      |++++..||..+.+.|++++|+++|+++.+.  +++++.+.+|.+|..    ..++.+|...++++....  +..+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence            6889999999999999999999999999775  589999999999987    678999999999987555  77788888


Q ss_pred             HHHHhh
Q 026642          222 GRYVSM  227 (235)
Q Consensus       222 ~~~~~~  227 (235)
                      +.++..
T Consensus        77 ~~~~~~   82 (265)
T d1ouva_          77 GNLYYS   82 (265)
T ss_dssp             HHHHHH
T ss_pred             cccccc
Confidence            777654

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.52  E-value=0.53  Score=41.25  Aligned_cols=54  Identities=28%  Similarity=0.318  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026642          146 NVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLST  199 (235)
Q Consensus       146 ~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~  199 (235)
                      ..+.....+...+..|+|.-|.+..+.++..+|++.+++..+|.+|..+|.-.+
T Consensus       429 G~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~  482 (505)
T d2cfua2         429 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE  482 (505)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCc
Confidence            467778888888899999999999999999999999999999999887776443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=84.83  E-value=2.2  Score=35.80  Aligned_cols=79  Identities=14%  Similarity=0.234  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026642          130 SEVEEMFEKLLEKEPRNVEALKVVMQGNMRRGRNKEALEFVKRLIDIEPNEVEWKLLQALCYELMGKLSTAKRLFKDILK  209 (235)
Q Consensus       130 ~eA~~~~e~aL~~~P~~~~a~~~la~~~~~~g~~~eAi~~l~kai~l~P~~~~a~~~lA~~~~~~g~~~~A~~~l~kaL~  209 (235)
                      +.+...+...... ..+.+....++...+..++++.+...++.+-.-......+.+-+|..+...|+.++|...|+.+..
T Consensus       269 ~~a~~~~~~~~~~-~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         269 DEQAKWRDDAIMR-SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhccc-ccchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            4555555555443 344444444555567788999999888876544344588899999999999999999999998864

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.02  E-value=0.68  Score=30.39  Aligned_cols=27  Identities=11%  Similarity=0.138  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026642          149 ALKVVMQGNMRRGRNKEALEFVKRLID  175 (235)
Q Consensus       149 a~~~la~~~~~~g~~~eAi~~l~kai~  175 (235)
                      .+-..+.-+.+.|+||+||+|++++..
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345567778889999999998877654