Citrus Sinensis ID: 026814

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MQTLTLTRATNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLASKRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRFKHECFGCLSSPKTS
Secondary Structure (PSIPRED)
ccccEEcccccEEccccccEEEccccccEEcEEEcccccccccHHHHcHHHHHHHHHccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHEEEEcccEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEHHHHHHcccccccEEccccccHEEEEEcccccccccccccccEEEEEcccccccccccccccccccEEEcccccEEcEEcHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccHHHHHHHHHHHHEccccHHHHHHHHHHHHHccccccccccEEEEEEEccccccHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MQTLTLTRATNlfsqhqddrylglsnhclcflsvhpaspppllaskRHRLKLAFVAKaadstqpssattsadktlvpddeftLAKVSFGVIGLGLGISLlsygfgayfsifpgsewsALMLTYGFPLAVIGMALKyaelkpvpcltysdaqslrETCATPILKQVRNDVIRFRYGDEQHLDEALKRIFQYglgggiprrsapVLQMIREEVclsnfrfkhecfgclsspkts
Flexible Loop (DISEMBL)
MQTLTLTratnlfsqHQDDRYLGLSNHCLCFLSVHPASPPPLLASKRHRLKLAFVakaadstqpssattsadktlvpDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETcatpilkqvrnDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLsnfrfkhecfgclsspkts
Low Complexity Region (SEG)
MQTLTLTRATNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLASKRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKvsfgviglglgisllsygfgAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRFKHECFGCLSSPKTS
Disordered region (IsUnstruct)
**********NLFSQHQDDRYLGLSNHCLCFLSVHP************RLKLAFV*********************PDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRFKHECFGCL******
Disordered Region (DISOPRED)
******T*ATNLFSQHQDDRYLGLSNHCLCFL************************************************FTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDA************KQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRFKHECFGCLSSPK**
Disordered Region (DISEMBL)
MQTLTLTRATNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLASKRHRLKLAFVAK***************KTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRFKHECFGCLSSPKTS
Disordered Region (DISPRO)
*QTLTLTRATNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLASKRHRLKLAFVAK***************KTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRFKHECFGCLSSPK**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQTLTLTRATNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLASKRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRFKHECFGCLSSPKTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q55403	184	Thylakoid membrane protei	N/A	no	0.431	0.543	0.436	9e-15

>sp|Q55403|Y575_SYNY3 Thylakoid membrane protein slr0575 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0575 PE=4 SV=1

 Score = 80.5 bits (197), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 63/110 (57%), Gaps = 10/110 (9%)

Query: 83  LAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLT---YGFPLAVIGMALKYAEL 139
           L K+S   +GL +G  L   GF AY       +++ L L    YG PL + G+ALK AEL
Sbjct: 2   LPKISLAAVGLTVGGILTITGFVAY-----ALDYATLNLAGFFYGIPLVLGGLALKAAEL 56

Query: 140 KPVPCL--TYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRI 187
           KP+P    T     +LR   ATP   Q+R DV R+RYG E HLDE+L+R+
Sbjct: 57  KPIPFSQPTSEKIIALRNQLATPTQNQIRKDVTRYRYGQEAHLDESLERL 106


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,131,179
Number of Sequences: 539616
Number of extensions: 3392081
Number of successful extensions: 8109
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8104
Number of HSP's gapped (non-prelim): 6
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
255579087	275	conserved hypothetical protein [Ricinus	0.836	0.705	0.741	6e-83
224077518	225	predicted protein [Populus trichocarpa]	0.706	0.728	0.842	7e-78
449447484	294	PREDICTED: thylakoid membrane protein sl	0.728	0.574	0.816	9e-77
449481443	294	PREDICTED: thylakoid membrane protein sl	0.728	0.574	0.816	1e-76
297801752	287	hypothetical protein ARALYDRAFT_494103 [	0.741	0.599	0.791	1e-74
30693285	286	protein acclimation of photosynthesis to	0.801	0.650	0.712	1e-73
334188069	431	protein acclimation of photosynthesis to	0.918	0.494	0.652	3e-73
25082754	286	Unknown protein [Arabidopsis thaliana]	0.801	0.650	0.707	4e-73
26450956	286	unknown protein [Arabidopsis thaliana]	0.801	0.650	0.707	6e-73
224127618	218	predicted protein [Populus trichocarpa]	0.616	0.655	0.881	2e-70

>gi|255579087|ref|XP_002530392.1| conserved hypothetical protein [Ricinus communis] gi|223530078|gb|EEF31998.1| conserved hypothetical protein [Ricinus communis]

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 161/217 (74%), Positives = 182/217 (83%), Gaps = 23/217 (10%)

Query: 5   TLTRATNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLAS---------KRHR-LKLAF 54
            +++AT +F+ H +DR+         FLSV+P SPP LL S         KRHR +KL F
Sbjct: 8   VVSKAT-VFNSH-NDRF---------FLSVYPHSPPLLLQSPRLDSRLCAKRHRNVKLVF 56

Query: 55  VAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGS 114
           VAKAADSTQPS+A+T+  K +V D+EF+LAKVSFGVIGLG+GISLLSYGFGAYF+I PGS
Sbjct: 57  VAKAADSTQPSTASTA--KAIVSDEEFSLAKVSFGVIGLGVGISLLSYGFGAYFNILPGS 114

Query: 115 EWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQVRNDVIRFRY 174
           EWSA+MLTYGFPLA+IGMALKYAELKPVPCLTYSDAQ LRET ATPILKQVRNDVIR+RY
Sbjct: 115 EWSAIMLTYGFPLAIIGMALKYAELKPVPCLTYSDAQMLRETSATPILKQVRNDVIRYRY 174

Query: 175 GDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEV 211
           GDEQHLDEALKRIFQYG GGGIPRRSAP+LQMIREEV
Sbjct: 175 GDEQHLDEALKRIFQYGQGGGIPRRSAPILQMIREEV 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077518|ref|XP_002305283.1| predicted protein [Populus trichocarpa] gi|222848247|gb|EEE85794.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 139/165 (84%), Positives = 154/165 (93%), Gaps = 1/165 (0%)

Query: 48  HRLKLAFVAKAADSTQPS-SATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGA 106
           HR+KL F+ KAADS+Q S S+T +A KT++ DDEF+LAKVSFGVIGLG GISLLSYGFGA
Sbjct: 6   HRVKLVFLTKAADSSQASPSSTATASKTIITDDEFSLAKVSFGVIGLGFGISLLSYGFGA 65

Query: 107 YFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQVR 166
           YF+I PGSEWSA+MLTYGFPLA+IGMALKYAELKPVPCLTYSDA+ LRE CATPILKQVR
Sbjct: 66  YFNILPGSEWSAIMLTYGFPLAIIGMALKYAELKPVPCLTYSDAEMLREKCATPILKQVR 125

Query: 167 NDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEV 211
           NDVIR+RYGDEQHLDEALKRIFQYGLGGGIPRR+AP+LQMIREEV
Sbjct: 126 NDVIRYRYGDEQHLDEALKRIFQYGLGGGIPRRNAPILQMIREEV 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447484|ref|XP_004141498.1| PREDICTED: thylakoid membrane protein slr0575-like [Cucumis sativus]

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 138/169 (81%), Positives = 151/169 (89%)

Query: 43  LASKRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSY 102
           L  K HRL  +F  +AADSTQPS+ + S  K +V DDEF+LAKVSFGVIGLG+G+SLLSY
Sbjct: 63  LLHKPHRLAFSFSTRAADSTQPSAVSASPGKAVVTDDEFSLAKVSFGVIGLGVGVSLLSY 122

Query: 103 GFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPIL 162
           GFGAYF+I PGSEWSA+MLTYGFPLA+IGMALKYAELKPVPCLTY DAQ LRETCATPIL
Sbjct: 123 GFGAYFNILPGSEWSAIMLTYGFPLAIIGMALKYAELKPVPCLTYLDAQKLRETCATPIL 182

Query: 163 KQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEV 211
           KQVR+DVIRFRYGDEQHLDEALKRIFQYGL GGIPRRSAP+LQ IREEV
Sbjct: 183 KQVRDDVIRFRYGDEQHLDEALKRIFQYGLAGGIPRRSAPILQSIREEV 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449481443|ref|XP_004156184.1| PREDICTED: thylakoid membrane protein slr0575-like [Cucumis sativus]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 138/169 (81%), Positives = 151/169 (89%)

Query: 43  LASKRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSY 102
           L  K HRL  +F  +AADSTQPS+ + S  K +V DDEF+LAKVSFGVIGLG+G+SLLSY
Sbjct: 63  LLHKPHRLPFSFSTRAADSTQPSAVSASPGKAVVTDDEFSLAKVSFGVIGLGVGVSLLSY 122

Query: 103 GFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPIL 162
           GFGAYF+I PGSEWSA+MLTYGFPLA+IGMALKYAELKPVPCLTY DAQ LRETCATPIL
Sbjct: 123 GFGAYFNILPGSEWSAIMLTYGFPLAIIGMALKYAELKPVPCLTYLDAQKLRETCATPIL 182

Query: 163 KQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEV 211
           KQVR+DVIRFRYGDEQHLDEALKRIFQYGL GGIPRRSAP+LQ IREEV
Sbjct: 183 KQVRDDVIRFRYGDEQHLDEALKRIFQYGLAGGIPRRSAPILQSIREEV 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801752|ref|XP_002868760.1| hypothetical protein ARALYDRAFT_494103 [Arabidopsis lyrata subsp. lyrata] gi|297314596|gb|EFH45019.1| hypothetical protein ARALYDRAFT_494103 [Arabidopsis lyrata subsp. lyrata]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 137/173 (79%), Positives = 156/173 (90%), Gaps = 1/173 (0%)

Query: 46  KRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFG 105
           KR  LKL F+ +AADST  S +  S D+TL+PDDEFTLAK+SFGVIGLGLG+SLLSYGFG
Sbjct: 55  KREILKLDFITRAADSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFG 114

Query: 106 AYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQV 165
           AYF+I PGSEWSA+MLTYGFPLA+IGMALKYAELKPVPCL+YSDA  LRE+CATPIL QV
Sbjct: 115 AYFNILPGSEWSAIMLTYGFPLAIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQV 174

Query: 166 RNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRF 218
           RNDV R+RYGDEQHL+EALKRIFQYGLGGGIPRRSAP+LQ+IREEV L++ R+
Sbjct: 175 RNDVTRYRYGDEQHLEEALKRIFQYGLGGGIPRRSAPILQLIREEV-LTDGRY 226

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693285|ref|NP_198682.3| protein acclimation of photosynthesis to environment [Arabidopsis thaliana] gi|87116662|gb|ABD19695.1| At5g38660 [Arabidopsis thaliana] gi|332006962|gb|AED94345.1| protein acclimation of photosynthesis to environment [Arabidopsis thaliana]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 141/198 (71%), Positives = 163/198 (82%), Gaps = 12/198 (6%)

Query: 32  LSVHPASPPPLLAS-----------KRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDE 80
           LSV  +S P L+             KR  LKL  V +AADST  S +  S D+TL+PDDE
Sbjct: 29  LSVVSSSQPSLMPKQRWLYIPETRLKREVLKLDVVGRAADSTSSSPSVASGDRTLIPDDE 88

Query: 81  FTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELK 140
           FTLAK+SFGVIGLGLG+SLLSYGFGAYF+I PG+EWSA+MLTYGFPL++IGMALKYAELK
Sbjct: 89  FTLAKISFGVIGLGLGVSLLSYGFGAYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELK 148

Query: 141 PVPCLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRS 200
           PVPCL+YSDA  LRE+CATPIL QVRNDV R+RYGDEQHL+EALKRIFQYGLGGGIPRRS
Sbjct: 149 PVPCLSYSDAVKLRESCATPILTQVRNDVTRYRYGDEQHLEEALKRIFQYGLGGGIPRRS 208

Query: 201 APVLQMIREEVCLSNFRF 218
           AP+LQ+IREEV L++ R+
Sbjct: 209 APILQLIREEV-LTDGRY 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188069|ref|NP_001190435.1| protein acclimation of photosynthesis to environment [Arabidopsis thaliana] gi|332006963|gb|AED94346.1| protein acclimation of photosynthesis to environment [Arabidopsis thaliana]

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 150/230 (65%), Positives = 175/230 (76%), Gaps = 17/230 (7%)

Query: 1   MQTLTLTRATN-LFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLAS-----------KRH 48
           M ++T+   T  LFS     R L L       LSV  +S P L+             KR 
Sbjct: 1   MGSITVAPGTTVLFSS----RRLDLCGRRHENLSVVSSSQPSLMPKQRWLYIPETRLKRE 56

Query: 49  RLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYF 108
            LKL  V +AADST  S +  S D+TL+PDDEFTLAK+SFGVIGLGLG+SLLSYGFGAYF
Sbjct: 57  VLKLDVVGRAADSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFGAYF 116

Query: 109 SIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQVRND 168
           +I PG+EWSA+MLTYGFPL++IGMALKYAELKPVPCL+YSDA  LRE+CATPIL QVRND
Sbjct: 117 TILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQVRND 176

Query: 169 VIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRF 218
           V R+RYGDEQHL+EALKRIFQYGLGGGIPRRSAP+LQ+IREEV L++ R+
Sbjct: 177 VTRYRYGDEQHLEEALKRIFQYGLGGGIPRRSAPILQLIREEV-LTDGRY 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25082754|gb|AAN71998.1| Unknown protein [Arabidopsis thaliana]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 140/198 (70%), Positives = 162/198 (81%), Gaps = 12/198 (6%)

Query: 32  LSVHPASPPPLLAS-----------KRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDE 80
           LSV  +S P L+             KR  LKL  V +A DST  S +  S D+TL+PDDE
Sbjct: 29  LSVVSSSQPSLMPKQRWLYIPETRLKREVLKLDVVGRAVDSTSSSPSVASGDRTLIPDDE 88

Query: 81  FTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELK 140
           FTLAK+SFGVIGLGLG+SLLSYGFGAYF+I PG+EWSA+MLTYGFPL++IGMALKYAELK
Sbjct: 89  FTLAKISFGVIGLGLGVSLLSYGFGAYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELK 148

Query: 141 PVPCLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRS 200
           PVPCL+YSDA  LRE+CATPIL QVRNDV R+RYGDEQHL+EALKRIFQYGLGGGIPRRS
Sbjct: 149 PVPCLSYSDAVKLRESCATPILTQVRNDVTRYRYGDEQHLEEALKRIFQYGLGGGIPRRS 208

Query: 201 APVLQMIREEVCLSNFRF 218
           AP+LQ+IREEV L++ R+
Sbjct: 209 APILQLIREEV-LTDGRY 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26450956|dbj|BAC42585.1| unknown protein [Arabidopsis thaliana]

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 140/198 (70%), Positives = 162/198 (81%), Gaps = 12/198 (6%)

Query: 32  LSVHPASPPPLLAS-----------KRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDE 80
           LSV  +S P L+             KR  LKL  V +AADST  S +  S D+TL+PDDE
Sbjct: 29  LSVVSSSQPSLMPKQRWLYIPETRLKREVLKLDVVGRAADSTSSSPSVASGDRTLIPDDE 88

Query: 81  FTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELK 140
           FTLAK+SFGVIGLGLG+SLLSYGFGAYF+I PG+EWSA+MLTYGFPL++IGMALKYAELK
Sbjct: 89  FTLAKISFGVIGLGLGVSLLSYGFGAYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELK 148

Query: 141 PVPCLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRS 200
           PVPCL+YSDA  LRE+CATPIL QVRNDV R+RYGD QHL+EALKRIFQYGLGGGIPRRS
Sbjct: 149 PVPCLSYSDAVKLRESCATPILTQVRNDVTRYRYGDAQHLEEALKRIFQYGLGGGIPRRS 208

Query: 201 APVLQMIREEVCLSNFRF 218
           AP+LQ+IREEV L++ R+
Sbjct: 209 APILQLIREEV-LTDGRY 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127618|ref|XP_002329322.1| predicted protein [Populus trichocarpa] gi|222870776|gb|EEF07907.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/143 (88%), Positives = 136/143 (95%)

Query: 69  TSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLA 128
           T+  KT+V DDEF+LAKVSFGVIGLGLGISLLSYGFGAYF+I PGSEWSA+MLTYGFPLA
Sbjct: 12  TTGSKTIVTDDEFSLAKVSFGVIGLGLGISLLSYGFGAYFNILPGSEWSAIMLTYGFPLA 71

Query: 129 VIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRIF 188
           +IGMALKYAELKPV CLTYSDA+ LRE CATPILKQVRNDVIR+RYGDEQHLDEALKRIF
Sbjct: 72  IIGMALKYAELKPVSCLTYSDAEILREKCATPILKQVRNDVIRYRYGDEQHLDEALKRIF 131

Query: 189 QYGLGGGIPRRSAPVLQMIREEV 211
           QYGLGGGIPRR+AP+LQMIREEV
Sbjct: 132 QYGLGGGIPRRNAPILQMIREEV 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2159888	286	APE1 "AT5G38660" [Arabidopsis	0.741	0.601	0.676	3.2e-58

TAIR|locus:2159888 APE1 "AT5G38660" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 117/173 (67%), Positives = 135/173 (78%)

Query:    46 KRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKXXXXXXXXXXXXXXXXXXXX 105
             KR  LKL  V +AADST  S +  S D+TL+PDDEFTLAK                    
Sbjct:    54 KREVLKLDVVGRAADSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFG 113

Query:   106 AYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQV 165
             AYF+I PG+EWSA+MLTYGFPL++IGMALKYAELKPVPCL+YSDA  LRE+CATPIL QV
Sbjct:   114 AYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQV 173

Query:   166 RNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRF 218
             RNDV R+RYGDEQHL+EALKRIFQYGLGGGIPRRSAP+LQ+IREEV L++ R+
Sbjct:   174 RNDVTRYRYGDEQHLEEALKRIFQYGLGGGIPRRSAPILQLIREEV-LTDGRY 225


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      232       212   0.00083  112 3  11 22  0.46    32
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  174 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.47u 0.12s 18.59t   Elapsed:  00:00:01
  Total cpu time:  18.47u 0.12s 18.59t   Elapsed:  00:00:01
  Start:  Sat May 11 06:37:09 2013   End:  Sat May 11 06:37:10 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
pfam11016	146	pfam11016, DUF2854, Protein of unknown function (D	7e-44

>gnl|CDD|192697 pfam11016, DUF2854, Protein of unknown function (DUF2854)

 Score =  144 bits (364), Expect = 7e-44
 Identities = 47/113 (41%), Positives = 65/113 (57%), Gaps = 12/113 (10%)

Query: 102 YGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVP--CLTYSDAQSLRETCAT 159
            GF AYF+   G+  S     YG P+ + G+ALK +ELKPVP  C   ++A +LRE  AT
Sbjct: 1   VGFVAYFT--DGANLSLPGFFYGIPILLGGLALKSSELKPVPVRCTPSAEALALREKQAT 58

Query: 160 PILKQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRR-SAPVLQMIREEV 211
           PIL Q+R DV R+RYG + HL+ +L+R+       G+      P L  I E +
Sbjct: 59  PILNQLRKDVTRYRYGQKAHLESSLERL-------GLWDDDEPPQLLGIEELL 104

This family of proteins has no known function. Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PF11016	147	DUF2854: Protein of unknown function (DUF2854); In	100.0

>PF11016 DUF2854: Protein of unknown function (DUF2854); InterPro: IPR021275 This family of proteins has no known function

Probab=100.00  E-value=1.3e-57  Score=377.71  Aligned_cols=118  Identities=47%  Similarity=0.688  Sum_probs=111.7

Q ss_pred             hhhhhhhccCCCCcchhhhhhhhhhHHHHHhhhhccccCCCC--CCCchHHHHHHhhcCchHHHHhhhcccceecchhhh
Q 026814          102 YGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVP--CLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQH  179 (232)
Q Consensus       102 vGf~AYf~~~p~anLSl~gffYGiPIlLgGLALK~AELkPvp--~~T~~~~~alRe~qAT~~q~Qvr~DVTRyRYGqeaH  179 (232)
                      |||+|||++++  |||++||||||||+|||||||||||||||  |.|+++++++||+|||+||+|||+||||||||||||
T Consensus         1 ~Gf~aY~~~~a--~lsl~~ffYGiPilLgGlALK~aEL~Pvp~~~~~~~~~~~lRe~qat~~~~qlr~DVTR~RYGqeaH   78 (147)
T PF11016_consen    1 IGFVAYFTDNA--NLSLPGFFYGIPILLGGLALKYAELKPVPFSCTTSPEALALREQQATPTQNQLRKDVTRYRYGQEAH   78 (147)
T ss_pred             CceeEEecCCC--ceeeehHHhhhHHHHHHHHHHHhcCCCCCcccCCHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHH
Confidence            69999999755  59999999999999999999999999999  889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCcchhhheeeeecCceeEEEeeCccc
Q 026814          180 LDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRFKHECFGCL  226 (232)
Q Consensus       180 Ld~ALerLf~~gL~~gi~d~~~PqL~~IrE~~~eg~Y~Lvle~~~~~  226 (232)
                      ||+|||+|   ||++  +|+++|+|++|||+++||+|+|+|++..+.
T Consensus        79 Le~aL~~L---~L~~--~~~~~P~L~~irE~~~~g~Y~LvL~F~s~~  120 (147)
T PF11016_consen   79 LEEALERL---GLSW--DDDEPPQLQGIREEVIDGAYGLVLEFESPA  120 (147)
T ss_pred             HHHHHHHh---cCCC--CcccChhhhheeeeeeCCceEEEEEEecCC
Confidence            99999999   7754  899999999999999999999999987543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00