Citrus Sinensis ID: 026836

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MPSTKIRLTFTSAASLSISLKAIFSRFLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER
Secondary Structure (PSIPRED)
cccccEEEEEEcccccHHHHHHHHHHHccccccccEEEcEEEEEEcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHccccccccccccccccccccccccHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccHHHHHHHHHHHHHHHHHHcccccEEEcEEEEEccHHHHccHHHHcHHHHHHHHHHccHHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MPSTKIRLTFTSAASLSISLKAIFSrflpnnlngaqilgrtIRVDHVAKYKKKEEEDEETRQRMREERgvcrafqrgectrgdgckfshneqraantgggpqdrssrwghekfegfswgkndsssratgsgrvalegnpnqsdrreekrsirhdhrekpredhgrredkrsrrhsdnnefearsredhyrrdekrpkrhesesylredqdrrggdksstgrgdssshrhrer
Flexible Loop (DISEMBL)
MPSTKIRLTFTSAASLSISLKAIFSRFLPNnlngaqilgrtirvdhvakykkkeeedeetrqrmreergvcrafqrgectrgdgckfshneqraantgggpqdrssrWGHEKFEgfswgkndsssratgsgrvalegnpnqsdrreekrsirhdhrekpredhgrredkrsrrhsdnnefearsredhyrrdekrpkrhesesylredqdrrggdksstgrgdssshrhrer
Low Complexity Region (SEG)
MPSTKIRLTFTsaaslsislkaifsRFLPNNLNGAQILGRTIRVDHVAkykkkeeedeetrqrmreerGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER
Disordered region (IsUnstruct)
******RLTFTSAASLSISLKAIFSRFLPNNLNGAQILGRTIRVDHVAK***************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
****KIR*TFTSAASLSISLKAIFSRFLPNNLNGAQILGRTIRVDHV*****************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MPSTKIRLTFTSAASLSISLKAIFSRFLPNNLNGAQILGRTIRVDHVAK*****************ERGVCRAFQRGECTRGDGCKFSHNE****************WGHEKFEGFSWG**********SGRVALE************************************************************************************************
Disordered Region (DISPRO)
**STKIRLTFTSAASLSISLKAIFSRFLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQR**CTRGDGCK**************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSTKIRLTFTSAASLSISLKAIFSRFLPNNLNGAQILGRTIRVDHxxxxxxxxxxxxxxxxxxxxxRGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q9SD61	352	Zinc finger CCCH domain-c	yes	no	0.370	0.244	0.712	1e-29
Q10B98	312	Zinc finger CCCH domain-c	yes	no	0.840	0.625	0.403	4e-16

>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana GN=At3g47120 PE=2 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 72/87 (82%), Gaps = 1/87 (1%)

Query: 27  FLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCK 86
              +NLNGA +LGRTI+VDH   YKK EEEDEETR++ RE RGVCRAFQRGECTRGD CK
Sbjct: 92  LAVDNLNGALVLGRTIKVDHCGAYKKHEEEDEETRRQNREARGVCRAFQRGECTRGDSCK 151

Query: 87  FSHNEQRAANTGGG-PQDRSSRWGHEK 112
           FSH+E+RAANTG G  +DRSS+W H+K
Sbjct: 152 FSHDEKRAANTGWGHEEDRSSKWDHDK 178

Arabidopsis thaliana (taxid: 3702)

>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica GN=Os03g0826400 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 92/228 (40%), Positives = 122/228 (53%), Gaps = 33/228 (14%)

Query: 27  FLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCK 86
              +NLNGA++LGR +RVDHV+KYKKKEEEDEE  Q+ RE RGVC AFQ+GEC RG  C+
Sbjct: 92  LAVDNLNGAKVLGRIVRVDHVSKYKKKEEEDEEELQKKREARGVCYAFQKGECNRGASCR 151

Query: 87  FSHNEQRAANTGGGPQDRS-SRW----------GHEKFEGFSWGKNDSSSRATGSGRVAL 135
           +SH+EQR ANTG G ++ S +RW           H+KF   S G+     RA    +   
Sbjct: 152 YSHDEQRNANTGWGSKEESKARWEHDRHHEPPMSHKKFPS-SAGEQRFPDRAKEENKST- 209

Query: 136 EGNPNQSDRRE--EKRSIRHDHREKPREDHGR----REDKRSR--RHSDNNEFEARSRED 187
            G   QS R E  + R  R  H ++  +DH R    R  +RSR  R  +N+ +       
Sbjct: 210 -GREGQSSRSEAYKDRDSRLRHSDRGSKDHDRYRHDRSPERSRGDRQRNNDRYAQG---- 264

Query: 188 HYRRDEKRPKRHESESYLREDQDRRGGDKSSTG----RGDSSSHRHRE 231
              RDEK  +      +   DQ R   D  S+G    RG+  S R+R+
Sbjct: 265 ---RDEKSERYRSEVKHDEGDQKRSRRDTDSSGHYERRGNEDSERYRK 309

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
224104290	243	predicted protein [Populus trichocarpa]	0.612	0.584	0.642	3e-36
297819328	316	hypothetical protein ARALYDRAFT_905943 [	0.650	0.477	0.520	1e-30
297745915	375	unnamed protein product [Vitis vinifera]	0.806	0.498	0.497	6e-28
15232729	352	RNA-binding motif protein, X-linked 2 [A	0.370	0.244	0.712	7e-28
356551855	354	PREDICTED: zinc finger CCCH domain-conta	0.801	0.525	0.450	2e-27
225434618	429	PREDICTED: uncharacterized protein LOC10	0.784	0.424	0.492	2e-27
449460375	395	PREDICTED: zinc finger CCCH domain-conta	0.767	0.450	0.453	7e-27
357490653	393	RNA binding domain protein [Medicago tru	0.715	0.422	0.521	7e-26
147840589	737	hypothetical protein VITISV_032469 [Viti	0.784	0.246	0.465	4e-25
297793411	173	hypothetical protein ARALYDRAFT_358097 [	0.353	0.473	0.646	7e-24

>gi|224104290|ref|XP_002313385.1| predicted protein [Populus trichocarpa] gi|222849793|gb|EEE87340.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/151 (64%), Positives = 110/151 (72%), Gaps = 9/151 (5%)

Query: 30  NNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCKFSH 89
           +NLNGAQ+LGR IRVDHV KYKKKEEEDEET Q+ RE RGVC AFQRGEC RG GC+FSH
Sbjct: 95  DNLNGAQVLGRIIRVDHVTKYKKKEEEDEETAQQKREARGVCHAFQRGECNRGAGCRFSH 154

Query: 90  NEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKR 149
           +EQRAANTG G QD+SSRWGHE F+G         S    S  +  E +P Q+DRREEKR
Sbjct: 155 DEQRAANTGWGAQDKSSRWGHEMFDG------PKKSEERSSYNMPSESHPKQNDRREEKR 208

Query: 150 SIRHDHRE---KPREDHGRREDKRSRRHSDN 177
           S  HD  E   KPRED+ RREDK+ RR  D+
Sbjct: 209 SRWHDDNEIVQKPREDYNRREDKKLRRLEDD 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819328|ref|XP_002877547.1| hypothetical protein ARALYDRAFT_905943 [Arabidopsis lyrata subsp. lyrata] gi|297323385|gb|EFH53806.1| hypothetical protein ARALYDRAFT_905943 [Arabidopsis lyrata subsp. lyrata]

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 110/173 (63%), Gaps = 22/173 (12%)

Query: 27  FLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCK 86
              +NLNGA +LGRTI+VDH  +YKK EEEDEETR++ RE RGVCRAFQRGECTRGD CK
Sbjct: 92  LAVDNLNGALVLGRTIKVDHCREYKKHEEEDEETRRQNREARGVCRAFQRGECTRGDSCK 151

Query: 87  FSHNEQRAANTGGG-PQDRSSRWGHEKFEGFSWG----------KNDS---SSRATGSGR 132
           FSH+E+RAANTG G  +DRSSRW H+KF G   G          K+D+   S R  G G 
Sbjct: 152 FSHDEKRAANTGWGHEEDRSSRWDHDKFNGAKKGGTSFGHRGDFKSDAEEKSYRGKGDGD 211

Query: 133 VALEGNPNQSDRRE-EKRSIR----HDHREKPREDHGRREDKRSRRHSDNNEF 180
            A  G P + +R E E    R    +D RE+ R   G  +D RSR H+  N++
Sbjct: 212 -AWYGRPKERERVEREDMGPRSRDAYDMREQKRS--GPYDDSRSRSHNAGNDY 261

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745915|emb|CBI15971.3| unnamed protein product [Vitis vinifera]

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/203 (49%), Positives = 125/203 (61%), Gaps = 16/203 (7%)

Query: 25  SRFLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDG 84
           +    +NLNGAQILGR IRVDHV+ YKKKEEEDEET ++ RE RGVCRAFQRGEC RG G
Sbjct: 90  TNLAVDNLNGAQILGRIIRVDHVSNYKKKEEEDEETERQKREARGVCRAFQRGECNRGAG 149

Query: 85  CKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDR 144
           CKFSH+EQRA+NTG G +D+SSRWGH+KF+G +  K+D    +  + RV  E    +  R
Sbjct: 150 CKFSHDEQRASNTGWGSEDKSSRWGHDKFQGST--KSDGRPNSIPTNRVH-EPTVGEGHR 206

Query: 145 --REEKRSIRHDHREKPREDHGRREDKRSR--------RHSDNNEFEARSREDHYRR-DE 193
              ++ RS R    E  RE H RR +   R        R  +  E E   +ED  RR  E
Sbjct: 207 FGNKDARSSRTKGSEGGRESHHRRSELDIRDQDGRGLERQMEQKEKELNYKEDQDRRTTE 266

Query: 194 KRPKRHESESYLREDQDRRGGDK 216
           +R  R +S     ED DRRG D+
Sbjct: 267 RRSGRPDSNP--GEDHDRRGEDQ 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232729|ref|NP_190296.1| RNA-binding motif protein, X-linked 2 [Arabidopsis thaliana] gi|75337070|sp|Q9SD61.1|C3H42_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 42; Short=AtC3H42 gi|6522593|emb|CAB61958.1| putative RNA binding protein [Arabidopsis thaliana] gi|27311733|gb|AAO00832.1| putative RNA-binding protein [Arabidopsis thaliana] gi|34098859|gb|AAQ56812.1| At3g47120 [Arabidopsis thaliana] gi|332644724|gb|AEE78245.1| RNA-binding motif protein, X-linked 2 [Arabidopsis thaliana]

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 72/87 (82%), Gaps = 1/87 (1%)

Query: 27  FLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCK 86
              +NLNGA +LGRTI+VDH   YKK EEEDEETR++ RE RGVCRAFQRGECTRGD CK
Sbjct: 92  LAVDNLNGALVLGRTIKVDHCGAYKKHEEEDEETRRQNREARGVCRAFQRGECTRGDSCK 151

Query: 87  FSHNEQRAANTGGG-PQDRSSRWGHEK 112
           FSH+E+RAANTG G  +DRSS+W H+K
Sbjct: 152 FSHDEKRAANTGWGHEEDRSSKWDHDK 178

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551855|ref|XP_003544288.1| PREDICTED: zinc finger CCCH domain-containing protein 42-like [Glycine max]

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/242 (45%), Positives = 137/242 (56%), Gaps = 56/242 (23%)

Query: 25  SRFLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDG 84
           +    +NLNGAQ+LGR IRVDHV KYKKKEEEDEET ++ RE RGVCRAFQRGECTRG  
Sbjct: 90  TNLAVDNLNGAQVLGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGECTRGAS 149

Query: 85  CKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFS----WGKN-----------DSSSRATG 129
           CKFSH+EQRAANTG G ++   +WGH+KF+G       G N           DS SRA  
Sbjct: 150 CKFSHDEQRAANTGWGREEDKPKWGHDKFDGPKKERRSGNNQSNHIAETRDRDSFSRARN 209

Query: 130 SGRVALEGNPNQSDR----------------------------------REEKRSIRHDH 155
           +    L+  P +SDR                                  REEKRSI+ D 
Sbjct: 210 ND-AELDNQPKRSDRKEMTKREYRYKREEKGSRRDDYDGMKLEPKDHHLREEKRSIKPDD 268

Query: 156 RE-KPRE-DHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRH---ESESYLREDQD 210
            E +P+  D   REDKRSRR  DN++  ++SRE H   ++++ ++H   ES    RED D
Sbjct: 269 VEVEPKSRDSDIREDKRSRRR-DNDDIVSKSREPHGYSEDRKSRKHSEGESAPKPREDYD 327

Query: 211 RR 212
           R+
Sbjct: 328 RK 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434618|ref|XP_002279321.1| PREDICTED: uncharacterized protein LOC100246760 [Vitis vinifera]

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/201 (49%), Positives = 128/201 (63%), Gaps = 19/201 (9%)

Query: 27  FLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCK 86
              +NLNGAQILGR IRVDHV+ YKKKEEEDEET ++ RE RGVCRAFQRGEC RG GCK
Sbjct: 92  LAVDNLNGAQILGRIIRVDHVSNYKKKEEEDEETERQKREARGVCRAFQRGECNRGAGCK 151

Query: 87  FSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDR-- 144
           FSH+EQRA+NTG G +D+SSRWGH+KF+G +  K+D    +  + RV  E    +  R  
Sbjct: 152 FSHDEQRASNTGWGSEDKSSRWGHDKFQGST--KSDGRPNSIPTNRVH-EPTVGEGHRFG 208

Query: 145 REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESY 204
            ++ RS R    E  RE H RR           +E + R ++   R  E++ ++ E E  
Sbjct: 209 NKDARSSRTKGSEGGRESHHRR-----------SELDIRDQDG--RGLERQMEQKEKELN 255

Query: 205 LREDQDRRGGDKSSTGRGDSS 225
            +EDQDRR  ++ S GR DS+
Sbjct: 256 YKEDQDRRTTERRS-GRPDSN 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460375|ref|XP_004147921.1| PREDICTED: zinc finger CCCH domain-containing protein 25-like [Cucumis sativus]

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 129/216 (59%), Gaps = 38/216 (17%)

Query: 25  SRFLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDG 84
           +    +NLNGAQILGR +RVDHV+KYKKKEEEDEE  Q+ RE RGVCRAFQRGECTRG G
Sbjct: 90  TNLAVDNLNGAQILGRIVRVDHVSKYKKKEEEDEEEEQKKREARGVCRAFQRGECTRGAG 149

Query: 85  CKFSHNEQRAANTG-GGPQDRSSRWGHEKFEGFSWGKNDSSSRATG-------------- 129
           CKFSH+EQRAA+TG G  +D SS+WGH+KF+  S   +D    A G              
Sbjct: 150 CKFSHDEQRAADTGWGAAEDASSKWGHDKFD--SRKNHDKELHAKGRKTSDNLGRHPRET 207

Query: 130 SGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHY 189
           SG +  E  P   D  +E          K REDHG +++KRSRR+  +   + +S +D Y
Sbjct: 208 SGSLRQENRPRGWDDSKESEL-------KSREDHGGKDEKRSRRYDLDGNSDPKSGDDQY 260

Query: 190 --------------RRDEKRPKRHESESYLREDQDR 211
                         R+DEKR ++H+++  ++ + DR
Sbjct: 261 KGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDR 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490653|ref|XP_003615614.1| RNA binding domain protein [Medicago truncatula] gi|355516949|gb|AES98572.1| RNA binding domain protein [Medicago truncatula]

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/186 (52%), Positives = 120/186 (64%), Gaps = 20/186 (10%)

Query: 27  FLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCK 86
              +NLNGAQ+ GR IRVDHV KYKK EEEDEE  ++ RE RGVCRAFQRGECTRG GCK
Sbjct: 92  LAVDNLNGAQVSGRIIRVDHVDKYKKMEEEDEEEAKQKREARGVCRAFQRGECTRGAGCK 151

Query: 87  FSHNEQRAANTGGGPQDRSSRWGHEKFEGFS----WGKN-----------DSSSRATGSG 131
           FSH+EQRAANTG G  +  ++  ++K++G      +G N           DS SRA G+G
Sbjct: 152 FSHDEQRAANTGWG-DNGIAKGDNDKYDGPKKERRYGNNQPDRIPETRDRDSRSRAHGNG 210

Query: 132 RVALEGNPNQSDRREEKRSIRHDHREK--PREDHGRREDKRSRRHSDNNEFEARSREDHY 189
            + L+    +SDRREEK   R D       RE+  RRE+KR R + D +EFE   RED +
Sbjct: 211 -MELDNPSKRSDRREEKMLRRQDGDGNFVGRENTSRREEKRPRDYKD-DEFEQWPREDRH 268

Query: 190 RRDEKR 195
           RR+EKR
Sbjct: 269 RREEKR 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840589|emb|CAN72715.1| hypothetical protein VITISV_032469 [Vitis vinifera]

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 124/217 (57%), Gaps = 35/217 (16%)

Query: 30  NNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCKFSH 89
           +NLNGAQILGR IRVDHV+ YKKKEEEDEET ++ RE RGVCRAFQRGEC RG GCKFSH
Sbjct: 95  DNLNGAQILGRIIRVDHVSNYKKKEEEDEETERQKREARGVCRAFQRGECNRGAGCKFSH 154

Query: 90  NEQ-------------------RAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGS 130
           +EQ                   RA+NTG G +D+SSRWGH+KF+G +  K+D    +  +
Sbjct: 155 DEQDLTFSWLSKSWRLVLQGLERASNTGWGSEDKSSRWGHDKFQGST--KSDGRPNSIPT 212

Query: 131 GRVALEGNPNQSDR--REEKRSIRHDHREKPREDHGRREDKRSR--------RHSDNNEF 180
            RV  E    +  R   ++ RS R    E  RE H RR +   R        R  +  E 
Sbjct: 213 NRVH-EPTVGEGHRFGNKDARSSRTKGSEGGRESHHRRSELDIRDQDGRGLERQMEQKEK 271

Query: 181 EARSREDHYRR-DEKRPKRHESESYLREDQDRRGGDK 216
           E   +ED  RR  E+R  R +S     ED DRRG D+
Sbjct: 272 ELNYKEDQDRRTTERRSGRPDSNP--GEDHDRRGEDQ 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793411|ref|XP_002864590.1| hypothetical protein ARALYDRAFT_358097 [Arabidopsis lyrata subsp. lyrata] gi|297310425|gb|EFH40849.1| hypothetical protein ARALYDRAFT_358097 [Arabidopsis lyrata subsp. lyrata]

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 65/82 (79%)

Query: 25  SRFLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDG 84
           +    +NLNGA++LGR I+V+H  KY K+EE+DEET+ + RE RGVCRAFQR ECTRGDG
Sbjct: 90  TNLAVDNLNGAKVLGRIIKVEHCGKYSKREEDDEETKHKKREARGVCRAFQRKECTRGDG 149

Query: 85  CKFSHNEQRAANTGGGPQDRSS 106
           CKFSH+E R ANTG G +DR S
Sbjct: 150 CKFSHDENRGANTGWGHEDRRS 171

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2075676	352	AT3G47120 [Arabidopsis thalian	0.840	0.553	0.381	3.3e-24
MGI|MGI:1919414	326	Rbmx2 "RNA binding motif prote	0.517	0.368	0.298	4.9e-10
UNIPROTKB|G5E5I0	338	RBMX2 "Uncharacterized protein	0.418	0.286	0.297	3.8e-08
DICTYBASE|DDB_G0288797	560	fip1l1 "cleavage and polyadeny	0.5	0.207	0.330	5.1e-08
WB|WBGene00018926	419	F56A11.6 [Caenorhabditis elega	0.612	0.338	0.304	8.5e-08
UNIPROTKB|F1LMQ9	327	Rbmx2 "RNA-binding motif prote	0.586	0.415	0.262	1.5e-07
RGD|1562693	328	Rbmx2 "RNA binding motif prote	0.586	0.414	0.262	1.5e-07
UNIPROTKB|G4NKC1	330	MGG_03086 "U2 snRNP component	0.366	0.257	0.344	7.6e-07
ZFIN|ZDB-GENE-030131-1495	635	zrsr2 "zinc finger (CCCH type)	0.646	0.236	0.294	1e-06
UNIPROTKB|E1C591	747	PPIG "Uncharacterized protein"	0.633	0.196	0.306	1.3e-06

TAIR|locus:2075676 AT3G47120 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 84/220 (38%), Positives = 106/220 (48%)

Query:    30 NNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSH 89
             +NLNGA +LGRTI+VDH                      GVCRAFQRGECTRGD CKFSH
Sbjct:    95 DNLNGALVLGRTIKVDHCGAYKKHEEEDEETRRQNREARGVCRAFQRGECTRGDSCKFSH 154

Query:    90 NEQRAANTGGG-PQDRSSRWGHEKF-EG------FSWG---KNDSSSRATGSGRVALEGN 138
             +E+RAANTG G  +DRSS+W H+K  EG      F  G   + DS   +    R A  G 
Sbjct:   155 DEKRAANTGWGHEEDRSSKWDHDKNREGRGVCRAFQRGECTRGDSCKFSHDEKRAATTGW 214

Query:   139 PNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKR 198
              ++ DR  +    + +  +K     G R D +     D  E   R R D       RPK 
Sbjct:   215 GHEEDRSSKWDQDKLNGAKKGGTSFGNRGDFKP----DVEEKSYRGRGDG-DASYGRPK- 268

Query:   199 HESESYLREDQDRRGGD------KSSTGRGDSS-SHRHRE 231
              E E   RED   R  D      +  +GR D++ S RH +
Sbjct:   269 -ERERVDREDMGPRSRDAYDMKEQKRSGRYDNAYSRRHND 307

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1919414 Rbmx2 "RNA binding motif protein, X-linked 2" [Mus musculus (taxid:10090)]

 Score = 126 (49.4 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
 Identities = 37/124 (29%), Positives = 58/124 (46%)

Query:   111 EKFEGFSWGKNDSSSR-ATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDK 169
             EK EG +  +  S SR AT   +     +   S +  E R+ + +HRE  ++ H    D 
Sbjct:   173 EKTEGQAQAEQPSCSRSATVKEKKDERASRKHSSKTSE-RAQKSEHRES-KKSHSGSPDG 230

Query:   170 RSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLRE-DQDRRGGDKSSTGRGDSSSHR 228
             RS  H+   + E ++R++  + + K   R E+E   RE ++ R  G  S   RG S    
Sbjct:   231 RSSYHARAEDPECKARKEKPKHEHKSASRREAEEKSRERERGRSSGTHSGRHRGHSDGRS 290

Query:   229 HRER 232
             HR R
Sbjct:   291 HRSR 294

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G5E5I0 RBMX2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
 Identities = 30/101 (29%), Positives = 45/101 (44%)

Query:   132 RVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSRE-DHYR 190
             R   + +P+  + R   RS   D   +PR++  + E K S R  +    E R RE D  R
Sbjct:   223 REVRKSHPSSPEVRMTCRSGTEDQEREPRKEKSKHEHKSSSRREER---EDRHRERDRGR 279

Query:   191 RDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRE 231
               +   +RH+  S  R D+   G    S  R    SHRH++
Sbjct:   280 SSDIHSRRHDRRSEGRHDRGSEGRSHRSRSRSRDKSHRHKK 320

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

DICTYBASE|DDB_G0288797 fip1l1 "cleavage and polyadenylation specificity factor FIP1" [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
 Identities = 40/121 (33%), Positives = 57/121 (47%)

Query:   112 KFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRS 171
             ++E  S   N+ S    GS R   E + + S R +  R  R   RE+ R+D  R E +RS
Sbjct:   356 QYEDDSNNNNNGSGSGGGSDRRRNESS-SSSSRGDSDRGERE--RERDRDDRDRSERERS 412

Query:   172 RRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRE 231
              R  D +E E   R +  R D  R +R  S+   R D+D+     SS+    SSS R  +
Sbjct:   413 DR--DRSERERSDRSERERSDRDRSERERSDRSERSDRDKTSSSSSSSNNNSSSSTRGSD 470

Query:   232 R 232
             R
Sbjct:   471 R 471

GO:0003723 "RNA binding" evidence=ISS

GO:0006379 "mRNA cleavage" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISS

WB|WBGene00018926 F56A11.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 139 (54.0 bits), Expect = 8.5e-08, P = 8.5e-08
 Identities = 46/151 (30%), Positives = 63/151 (41%)

Query:    88 SHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKND---SSSRATGSGRVALEGNPNQSDR 144
             S  ++    + GG + RS R  H+K       ++D   S SR     R       ++ DR
Sbjct:   248 SRQDRERDRSRGGEKSRSPRKSHQKSVDRDKTRSDKDRSRSRKDREDRDRERSRKDREDR 307

Query:   145 -REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESES 203
              RE  R  R D   K RED  R   ++ R      + E RSR+D   RD  R +    + 
Sbjct:   308 DRERSRKEREDRSRKDREDRERERSRKEREDRSRKDRE-RSRQDREDRDRDRDRDRSRKD 366

Query:   204 YLREDQD--RRGGDKSSTGRGDSSSHRHRER 232
               R+D+   RR  D  S  R D  S   RER
Sbjct:   367 --RDDKSCSRRSRDDRSEERKDRKSRDDRER 395

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|F1LMQ9 Rbmx2 "RNA-binding motif protein, X-linked 2" [Rattus norvegicus (taxid:10116)]

 Score = 106 (42.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 37/141 (26%), Positives = 56/141 (39%)

Query:    79 CTRGDGCKFSHNEQRAANTGGGPQDRSSRWG-HEKFEGFSWGKNDSSSRATGSGRVALEG 137
             C+R    K + +EQ A      P +R+ +    E+ +  S G  D  +   G        
Sbjct:   186 CSRSKTVKET-DEQSAKKHSSKPSERAQKSECRERKKSHS-GSPDGRTSCRGRAEEPEWE 243

Query:   138 NPNQSDRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEA-RSREDHYRRDEKR 195
                +  + E K S R +  EK R+ D GR     S RH  ++E  + RSR     R   R
Sbjct:   244 AKKEKHKHEHKPSSRREGEEKSRDKDRGRSSGTHSSRHHGHSEGRSHRSRSRSRSRSPDR 303

Query:   196 PKRHESESYLREDQDRRGGDK 216
               RH+   Y  E +     D+
Sbjct:   304 SHRHKKHRYSHERESFHASDR 324

GO:0000166 "nucleotide binding" evidence=IEA

RGD|1562693 Rbmx2 "RNA binding motif protein, X-linked 2" [Rattus norvegicus (taxid:10116)]

 Score = 106 (42.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 37/141 (26%), Positives = 56/141 (39%)

Query:    79 CTRGDGCKFSHNEQRAANTGGGPQDRSSRWG-HEKFEGFSWGKNDSSSRATGSGRVALEG 137
             C+R    K + +EQ A      P +R+ +    E+ +  S G  D  +   G        
Sbjct:   187 CSRSKTVKET-DEQSAKKHSSKPSERAQKSECRERKKSHS-GSPDGRTSCRGRAEEPEWE 244

Query:   138 NPNQSDRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEA-RSREDHYRRDEKR 195
                +  + E K S R +  EK R+ D GR     S RH  ++E  + RSR     R   R
Sbjct:   245 AKKEKHKHEHKPSSRREGEEKSRDKDRGRSSGTHSSRHHGHSEGRSHRSRSRSRSRSPDR 304

Query:   196 PKRHESESYLREDQDRRGGDK 216
               RH+   Y  E +     D+
Sbjct:   305 SHRHKKHRYSHERESFHASDR 325

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|G4NKC1 MGG_03086 "U2 snRNP component IST3" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 119 (46.9 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
 Identities = 31/90 (34%), Positives = 45/90 (50%)

Query:   145 REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARS-REDHYRRDEKRPK-RHESE 202
             RE+K+S R   ++  R        + SR+H + ++ EA S R+   RRDE R + R   +
Sbjct:   191 REQKKSSRRKDKDGSRSSRHHHHHRTSRKHREESDDEAGSDRKRRKRRDESRSRERRRRD 250

Query:   203 SYLREDQDRRGGDKSSTGRGDSSSHRHRER 232
              Y  +D+ R   D  S  R DS   R RER
Sbjct:   251 DYKDKDKHR---DSDSRRRDDSKDRRRRER 277

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-1495 zrsr2 "zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2" [Danio rerio (taxid:7955)]

 Score = 134 (52.2 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 48/163 (29%), Positives = 72/163 (44%)

Query:    70 VCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATG 129
             +C  F R +C +G  C F H  +   N      DR      ++  GFS      S R   
Sbjct:   324 ICGLFDRRKCPKGKHCNFLHVFRNPDNEFW-EADRDLHMSPDRGGGFS--ARHMSGR--- 377

Query:   130 SGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHY 189
              G  +  GN   S+R + +R+ R  H  +     GRR   R RR S + E  +RSRE   
Sbjct:   378 DGMWSQRGN--SSERFQRRRTDRRSHSRERYSYRGRRSRSRERR-SRSRERRSRSRERRS 434

Query:   190 RRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 232
             R  E++ +  E +S  R  + R+   ++S  R  S+S R + R
Sbjct:   435 RSRERQNRNRERQSRSRSREKRKS--ENSIRR--STSQREQSR 473

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C591 PPIG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 134 (52.2 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 49/160 (30%), Positives = 72/160 (45%)

Query:    80 TRGDGCKFSHNEQRAANTGGGPQDRSSRWG--HEKFEGFSW------GKNDSSSRATGSG 131
             +RG   + S +++R+   G    +R  R     EK +  S       GK+ SSSR     
Sbjct:   502 SRGRDKERSRSKERSRRAGSRSNERDHRKSKDREKHKSRSREREHARGKHSSSSRTRERS 561

Query:   132 RVALEGNPNQSDRREEKRSIRHDH-REKPREDHGRREDKRSRRHSDNNEFEARSREDHYR 190
             +    G   +S  R+  RS   ++ R + RE   RR   R RR + +     R RE+  R
Sbjct:   562 KSRDRGRRGRSRSRDRDRSRSKEYSRNRDRESRRRRSRSRERRGTPDRY---RGRENRRR 618

Query:   191 RDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHR 230
             R+ +  +R ES+S  RE    R   +SS  R DS S R R
Sbjct:   619 RNSRSSEREESQSRNRERYSNRES-RSSYKRNDSESQRKR 657

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
cd12411	89	cd12411, RRM_ist3_like, RNA recognition motif in i	2e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	3e-04
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.001
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	0.001
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	0.002
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.003
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.004

>gnl|CDD|240857 cd12411, RRM_ist3_like, RNA recognition motif in ist3 family

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 15/20 (75%), Positives = 17/20 (85%)

Query: 31 NLNGAQILGRTIRVDHVAKY 50
          NLNG ++LGRTIRVDHV  Y
Sbjct: 70 NLNGIKLLGRTIRVDHVRNY 89

This subfamily corresponds to the RRM of the ist3 family that includes fungal U2 small nuclear ribonucleoprotein (snRNP) component increased sodium tolerance protein 3 (ist3), X-linked 2 RNA-binding motif proteins (RBMX2) found in Metazoa and plants, and similar proteins. Gene IST3 encoding ist3, also termed U2 snRNP protein SNU17 (Snu17p), is a novel yeast Saccharomyces cerevisiae protein required for the first catalytic step of splicing and for progression of spliceosome assembly. It binds specifically to the U2 snRNP and is an intrinsic component of prespliceosomes and spliceosomes. Yeast ist3 contains an atypical RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). In the yeast pre-mRNA retention and splicing complex, the atypical RRM of ist3 functions as a scaffold that organizes the other two constituents, Bud13p (bud site selection 13) and Pml1p (pre-mRNA leakage 1). Fission yeast Schizosaccharomyces pombe gene cwf29 encoding ist3, also termed cell cycle control protein cwf29, is an RNA-binding protein complexed with cdc5 protein 29. It also contains one RRM. The biological function of RBMX2 remains unclear. It shows high sequence similarity to yeast ist3 protein and harbors one RRM as well. . Length = 89

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 32/138 (23%), Positives = 43/138 (31%), Gaps = 11/138 (7%)

Query: 54  EEEDEETRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKF 113
             E  E  +R    R   R  ++ E  RG+        +      G  +DR  R   E+ 
Sbjct: 160 AAERTEEEERDERRRRGDREDRQAEAERGER-----GRREERGRDGDDRDRRDR--REQG 212

Query: 114 EGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRR 173
           +              G  R     +    D RE++     D  E      GRR   R RR
Sbjct: 213 DRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRR 272

Query: 174 HSDN----NEFEARSRED 187
                   NE E   RED
Sbjct: 273 GRRGGDGGNEREPELRED 290

Length = 672

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 70 VCRAFQRGECTRGDGCKFSHNE 91
          +C+ F+RG C RGD CKF+H  
Sbjct: 6  LCKFFKRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 35/179 (19%), Positives = 56/179 (31%), Gaps = 7/179 (3%)

Query: 53  KEEEDEETRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEK 112
                E  + R R ERG   A +      G+G +    E RA       ++         
Sbjct: 118 AASAPEAAQARERRERGE-AARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRG 176

Query: 113 FEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSR 172
                  + +   R     R     + ++ DRRE+        R    +  GRR  +  R
Sbjct: 177 DREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRR 236

Query: 173 RHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRE 231
               ++  E R   D    + +  +R         D+DRRG        G+      RE
Sbjct: 237 DARGDDNREDRGDRDGDDGEGRGGRRGRR----FRDRDRRGRR--GGDGGNEREPELRE 289

Length = 672

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 2/91 (2%)

Query: 142 SDRREEKRSIRHDHREKPRE--DHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRH 199
           S+R   +   R   R++ R   +   RED R R     +    RS      R  +   R 
Sbjct: 21  SERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRR 80

Query: 200 ESESYLREDQDRRGGDKSSTGRGDSSSHRHR 230
            S S    +Q RR     S         + R
Sbjct: 81  RSRSVRSIEQHRRRLRDRSPSNQWRKDDKKR 111

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 144 RREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDE----KRPKRH 199
           R EE    R   R + R+    R  +RSR  S   +   RSRE  YR D     +R    
Sbjct: 1   RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60

Query: 200 ESESYLREDQDRRGGD---KSSTGRGDSSSHRHRER 232
            S   LR    RR  D   + S        HR R R
Sbjct: 61  RSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLR 96

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 9/83 (10%)

Query: 133 VALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRD 192
              E    +++ + E++  R   R+  R D   R D R  R           RE    R+
Sbjct: 587 KPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRT---------RREGRENRE 637

Query: 193 EKRPKRHESESYLREDQDRRGGD 215
           E R  R +++    E ++ +  +
Sbjct: 638 ENRRNRRQAQQQTAETRESQQAE 660

Length = 1068

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 6/143 (4%)

Query: 90  NEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKR 149
               AA     P+   +R   E+ E    G    +             +  +    EE+ 
Sbjct: 111 AAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERD 170

Query: 150 SIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQ 209
             R     + R+    R ++  R     +  +   R+   + D +  +        R+  
Sbjct: 171 ERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGR------RDGG 224

Query: 210 DRRGGDKSSTGRGDSSSHRHRER 232
           DRRG  +    R         +R
Sbjct: 225 DRRGRRRRRDRRDARGDDNREDR 247

Length = 672

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
KOG0126	219	consensus Predicted RNA-binding protein (RRM super	99.82
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	95.15
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	94.81
smart00356	27	ZnF_C3H1 zinc finger.	94.66
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	93.72
KOG1763	343	consensus Uncharacterized conserved protein, conta	88.52
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	86.38
KOG0130	170	consensus RNA-binding protein RBM8/Tsunagi (RRM su	84.22
KOG0108	435	consensus mRNA cleavage and polyadenylation factor	82.57

>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=99.82  E-value=4.8e-21  Score=167.20  Aligned_cols=87  Identities=32%  Similarity=0.453  Sum_probs=73.9

Q ss_pred             ecceeeeeeeecCCCceecCceeEecccccccccccccHHHHHHHHHhhhhhHhhhcCCCCCCCCCcccccccccCCCCC
Q 026836           20 LKAIFSRFLPNNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGG   99 (232)
Q Consensus        20 ~~~~StiLAVDNlNG~~v~GR~irVDHv~~Yk~~~~edee~~~~~~e~~~v~~alq~~~C~~~~~ck~sh~~q~~~~t~~   99 (232)
                      -.|+||||||||||||+|+|||||||||.+|++|.+..+        ++.|+..||+++|.+..+-.+.++++.++++.|
T Consensus        85 EDQRSTILAVDN~NGiki~gRtirVDHv~~Yk~pk~~E~--------~d~~t~~L~~~g~~~~~~~~~~~~~~~~~~~k~  156 (219)
T KOG0126|consen   85 EDQRSTILAVDNLNGIKILGRTIRVDHVSNYKKPKESEE--------MDAVTKELQEEGCSPKNQSIIAQPEKPSPRYKT  156 (219)
T ss_pred             cCccceEEEEeccCCceecceeEEeeecccccCCchhhh--------hhHHHHHHhhccCCCCchhhhccccCCCccccc
Confidence            369999999999999999999999999999999966555        788999999999999999889999999999999


Q ss_pred             CC--CCCCccccccccc
Q 026836          100 GP--QDRSSRWGHEKFE  114 (232)
Q Consensus       100 ~s--ed~~~~~~~~k~~  114 (232)
                      +-  +++.+.+.+.+..
T Consensus       157 ~~e~~~~~~~K~~~~~~  173 (219)
T KOG0126|consen  157 VKEKEDRGSKKHSKKNK  173 (219)
T ss_pred             eeecccccchhhhhhhH
Confidence            95  4555444444333

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=95.15  E-value=0.0093  Score=56.28  Aligned_cols=30  Identities=43%  Similarity=0.864  Sum_probs=26.6

Q ss_pred             HHHHhhhhhHhhhcCCCCCCCC-Cccccccc
Q 026836           63 RMREERGVCRAFQRGECTRGDG-CKFSHNEQ   92 (232)
Q Consensus        63 ~~~e~~~v~~alq~~~C~~~~~-ck~sh~~q   92 (232)
                      .+-..++||+.||++-|.+++- |||.|+..
T Consensus        32 ~~wl~~eVCReF~rn~C~R~d~~CkfaHP~~   62 (331)
T KOG2494|consen   32 TKWLTLEVCREFLRNTCSRGDRECKFAHPPK   62 (331)
T ss_pred             cchhHHHHHHHHHhccccCCCccccccCCCC
Confidence            4455789999999999999999 99999866

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.81  E-value=0.013  Score=36.13  Aligned_cols=24  Identities=50%  Similarity=1.144  Sum_probs=18.0

Q ss_pred             hhhhHhhhc-CCCCCCCCCcccccc
Q 026836           68 RGVCRAFQR-GECTRGDGCKFSHNE   91 (232)
Q Consensus        68 ~~v~~alq~-~~C~~~~~ck~sh~~   91 (232)
                      ..+|..|++ |.|..|+.|+|+|++
T Consensus         3 ~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    3 TKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             SSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             cccChhhccCCccCCCCCcCccCCC
Confidence            357888888 889999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>smart00356 ZnF_C3H1 zinc finger

Probab=94.66  E-value=0.015  Score=34.23  Aligned_cols=23  Identities=48%  Similarity=1.089  Sum_probs=20.6

Q ss_pred             hhhHhhhcCCCCCCCCCcccccc
Q 026836           69 GVCRAFQRGECTRGDGCKFSHNE   91 (232)
Q Consensus        69 ~v~~alq~~~C~~~~~ck~sh~~   91 (232)
                      .+|..|+.|.|..|..|+|+|+.
T Consensus         5 ~~C~~~~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        5 ELCKFFKRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CcCcCccCCCCCCCCCcCCCCcC
Confidence            47899999999999999999973

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.72  E-value=0.026  Score=52.11  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=20.9

Q ss_pred             eeeeeecCCCceecCceeEecccc
Q 026836           25 SRFLPNNLNGAQILGRTIRVDHVA   48 (232)
Q Consensus        25 tiLAVDNlNG~~v~GR~irVDHv~   48 (232)
                      +-.||||||+.+|.||||+|....
T Consensus        65 AaaAiDNMnesEL~GrtirVN~Ak   88 (298)
T KOG0111|consen   65 AAAAIDNMNESELFGRTIRVNLAK   88 (298)
T ss_pred             hHHHhhcCchhhhcceeEEEeecC
Confidence            346899999999999999998763

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=88.52  E-value=0.24  Score=47.08  Aligned_cols=46  Identities=39%  Similarity=0.754  Sum_probs=32.5

Q ss_pred             hhhHhhhcCCCCCCCCCcccccccccCCCCCCC-----CCCCcccccccccCC
Q 026836           69 GVCRAFQRGECTRGDGCKFSHNEQRAANTGGGP-----QDRSSRWGHEKFEGF  116 (232)
Q Consensus        69 ~v~~alq~~~C~~~~~ck~sh~~q~~~~t~~~s-----ed~~~~~~~~k~~~~  116 (232)
                      -||--|.+|.|+-|+.|+|||+....--+.-.+     -|+|  |.-++..+.
T Consensus        93 vvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdem--WD~~kl~~v  143 (343)
T KOG1763|consen   93 VVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEM--WDEEKLEEV  143 (343)
T ss_pred             HHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhhh--hhHHHHHHH
Confidence            479999999999999999999987554433321     2335  866655543

>PF13893 RRM_5: RNA recognition motif

Probab=86.38  E-value=0.14  Score=34.21  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=21.2

Q ss_pred             eeeeeeeecCCCceecCceeEecc
Q 026836           23 IFSRFLPNNLNGAQILGRTIRVDH   46 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irVDH   46 (232)
                      -++..|+-+|||..+.|++|+|++
T Consensus        32 ~~A~~a~~~l~~~~~~g~~l~V~~   55 (56)
T PF13893_consen   32 EDAQKAIEQLNGRQFNGRPLKVSY   55 (56)
T ss_dssp             HHHHHHHHHHTTSEETTEEEEEEE
T ss_pred             HHHHHHHHHhCCCEECCcEEEEEE
Confidence            456778999999999999999986

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]

Probab=84.22  E-value=0.28  Score=42.64  Aligned_cols=27  Identities=33%  Similarity=0.476  Sum_probs=23.4

Q ss_pred             eeeeecCCCceecCceeEeccccccccc
Q 026836           26 RFLPNNLNGAQILGRTIRVDHVAKYKKK   53 (232)
Q Consensus        26 iLAVDNlNG~~v~GR~irVDHv~~Yk~~   53 (232)
                      --|||-|||+.|||.+|.||.+ .-+.|
T Consensus       128 q~A~~~~Ng~~ll~q~v~VDw~-Fv~gp  154 (170)
T KOG0130|consen  128 QAAIDALNGAELLGQNVSVDWC-FVKGP  154 (170)
T ss_pred             HHHHHhccchhhhCCceeEEEE-EecCC
Confidence            4589999999999999999999 55555

>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]

Probab=82.57  E-value=0.36  Score=46.90  Aligned_cols=36  Identities=28%  Similarity=0.346  Sum_probs=28.9

Q ss_pred             eeecc-eeeeeeeecCCCceecCceeEeccccccccc
Q 026836           18 ISLKA-IFSRFLPNNLNGAQILGRTIRVDHVAKYKKK   53 (232)
Q Consensus        18 ~~~~~-~StiLAVDNlNG~~v~GR~irVDHv~~Yk~~   53 (232)
                      +.|+. ..|-.||-||||+++.||+|+|++..+++..
T Consensus        65 ~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~~  101 (435)
T KOG0108|consen   65 CEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKNA  101 (435)
T ss_pred             EecCchhhHHHHHHhcCCcccCCceEEeecccccchh
Confidence            44444 4566799999999999999999998777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
2rhk_C	72	Cleavage and polyadenylation specificity factor su	5e-05
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	2e-04
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	3e-04
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	6e-04

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 57 DEETRQRMREERGVCRAFQRGECTRGDGCKFSHN 90
                   E+  VC+ + RG C +GD C+F H 
Sbjct: 5  HHHHSHMSGEKTVVCKHWLRGLCKKGDQCEFLHE 38

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 70 VCRAFQRGECTRGDGCKFSH 89
          VC+ + RG C +GD C+F H
Sbjct: 12 VCKHWLRGLCKKGDQCEFLH 31

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 70  VCRAFQRGECTRGDG-CKFSHNEQRAANTGGG 100
           VCR FQRG C+R D  CKF+H  +      G 
Sbjct: 19  VCRQFQRGTCSRSDEECKFAHPPKSCQVENGR 50

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Length = 83

 Score = 37.0 bits (85), Expect = 6e-04
 Identities = 14/21 (66%), Positives = 16/21 (76%), Gaps = 1/21 (4%)

Query: 70 VCRAFQRGECTRGDG-CKFSH 89
          VCR FQRG C+R D  CKF+H
Sbjct: 11 VCREFQRGTCSRPDTECKFAH 31

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	95.63
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	95.56
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	95.46
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	93.54
2rhk_C	72	Cleavage and polyadenylation specificity factor su	93.38
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	92.83
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	88.74
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	88.65
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	88.28
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	88.23
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	86.62
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	85.42
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	85.38
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	85.02
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	84.47
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	84.23
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	84.01
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	83.01
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	82.08
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	81.85
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	81.73
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	81.63
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	81.26
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	81.19
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	80.86
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	80.66
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	80.47
1x5p_A	97	Negative elongation factor E; structure genomics,	80.04

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=95.63  E-value=0.0035  Score=47.50  Aligned_cols=27  Identities=52%  Similarity=1.084  Sum_probs=23.9

Q ss_pred             hhhhhHhhhcCCCCCCC-CCcccccccc
Q 026836           67 ERGVCRAFQRGECTRGD-GCKFSHNEQR   93 (232)
Q Consensus        67 ~~~v~~alq~~~C~~~~-~ck~sh~~q~   93 (232)
                      .-.||+.||+|.|.+++ .|+|+|+...
T Consensus        16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~   43 (89)
T 2rpp_A           16 TLEVCRQFQRGTCSRSDEECKFAHPPKS   43 (89)
T ss_dssp             EECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred             hhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence            35699999999999998 9999998765

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=95.56  E-value=0.0036  Score=46.69  Aligned_cols=26  Identities=54%  Similarity=1.114  Sum_probs=23.3

Q ss_pred             hhhhhHhhhcCCCCCCC-CCccccccc
Q 026836           67 ERGVCRAFQRGECTRGD-GCKFSHNEQ   92 (232)
Q Consensus        67 ~~~v~~alq~~~C~~~~-~ck~sh~~q   92 (232)
                      .-.||+.|++|.|.+++ .|+|+|+..
T Consensus         8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~   34 (83)
T 3d2n_A            8 TLEVCREFQRGTCSRPDTECKFAHPSK   34 (83)
T ss_dssp             EEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred             cchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence            45799999999999996 999999975

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=95.46  E-value=0.0047  Score=43.97  Aligned_cols=25  Identities=48%  Similarity=1.216  Sum_probs=22.4

Q ss_pred             hhhhHhhhcCCCCCCCC-Cccccccc
Q 026836           68 RGVCRAFQRGECTRGDG-CKFSHNEQ   92 (232)
Q Consensus        68 ~~v~~alq~~~C~~~~~-ck~sh~~q   92 (232)
                      ..||+.|++|.|.+|++ |+|+|+..
T Consensus         6 ~~vC~~f~~G~C~rg~~~C~f~H~~~   31 (70)
T 3d2q_A            6 LEVCREYQRGNCNRGENDCRFAHPAD   31 (70)
T ss_dssp             EEBCHHHHTTCCSSCTTTCSSBCCCT
T ss_pred             chhCHHHhcCCCCCCCCCCCCccCcc
Confidence            46999999999999995 99999864

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.54  E-value=0.0099  Score=45.38  Aligned_cols=27  Identities=48%  Similarity=1.159  Sum_probs=23.5

Q ss_pred             hhhhhHhhhcCCCCCCC-CCcccccccc
Q 026836           67 ERGVCRAFQRGECTRGD-GCKFSHNEQR   93 (232)
Q Consensus        67 ~~~v~~alq~~~C~~~~-~ck~sh~~q~   93 (232)
                      ...||+.|++|.|.+|+ .|+|+|+...
T Consensus        19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~   46 (98)
T 2e5s_A           19 KLEVCREFQRGNCARGETDCRFAHPADS   46 (98)
T ss_dssp             EEEBCSHHHHTCCSSHHHHCSSBCCSSC
T ss_pred             hhhhhHHHhcCcCCCCCCCCCCcCCchh
Confidence            34699999999999999 6999999754

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=93.38  E-value=0.023  Score=40.92  Aligned_cols=25  Identities=40%  Similarity=0.947  Sum_probs=22.6

Q ss_pred             hhhhHhhhcCCCCCCCCCccccccc
Q 026836           68 RGVCRAFQRGECTRGDGCKFSHNEQ   92 (232)
Q Consensus        68 ~~v~~alq~~~C~~~~~ck~sh~~q   92 (232)
                      ..||+-|++|.|..|+.|+|+|+..
T Consensus        16 ~~vCk~fl~G~C~~G~~C~fsH~~~   40 (72)
T 2rhk_C           16 TVVCKHWLRGLCKKGDQCEFLHEYD   40 (72)
T ss_dssp             CSBCHHHHTTCCCCGGGSSSBCSCC
T ss_pred             CeeCHHHhcCCCCCCCCCCCccccc
Confidence            4589999999999999999999854

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.83  E-value=0.042  Score=39.55  Aligned_cols=25  Identities=40%  Similarity=0.947  Sum_probs=22.8

Q ss_pred             hhhhHhhhcCCCCCCCCCccccccc
Q 026836           68 RGVCRAFQRGECTRGDGCKFSHNEQ   92 (232)
Q Consensus        68 ~~v~~alq~~~C~~~~~ck~sh~~q   92 (232)
                      ..||+-|++|.|..|+.|+|+|+..
T Consensus        10 ~~~C~~fl~G~C~~G~~C~fsH~~~   34 (77)
T 2d9n_A           10 TVVCKHWLRGLCKKGDQCEFLHEYD   34 (77)
T ss_dssp             TSBCHHHHTTCCSCTTSSSSBCSCC
T ss_pred             ceeCHhHccCcCCCCCCCCCccccc
Confidence            4689999999999999999999875

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=88.74  E-value=0.13  Score=39.01  Aligned_cols=24  Identities=29%  Similarity=0.915  Sum_probs=21.4

Q ss_pred             hhhhhHhhhcCCCCCCCCCccccc
Q 026836           67 ERGVCRAFQRGECTRGDGCKFSHN   90 (232)
Q Consensus        67 ~~~v~~alq~~~C~~~~~ck~sh~   90 (232)
                      ...||+.|+.|.|..|+.|+|+|+
T Consensus        12 k~~lC~~f~~G~C~~G~~C~f~H~   35 (98)
T 2cqe_A           12 KRELCKFYITGFCARAENCPYMHG   35 (98)
T ss_dssp             CCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             CCccCcccccCcCCCCCCCCCCCC
Confidence            345899999999999999999998

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=88.65  E-value=0.15  Score=35.63  Aligned_cols=27  Identities=30%  Similarity=0.831  Sum_probs=22.6

Q ss_pred             hhhhHhhh-cCCCCCCCCCccccccccc
Q 026836           68 RGVCRAFQ-RGECTRGDGCKFSHNEQRA   94 (232)
Q Consensus        68 ~~v~~alq-~~~C~~~~~ck~sh~~q~~   94 (232)
                      ..+|+.|+ .|.|..|+.|+|+|+....
T Consensus        12 t~~C~~f~~~G~C~~G~~C~f~H~~~e~   39 (77)
T 1m9o_A           12 TELCRTYSESGRCRYGAKCQFAHGLGEL   39 (77)
T ss_dssp             SCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred             chhCHHhhhCCCcCCCCCccCCCCChhh
Confidence            45898885 8899999999999997543

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=88.28  E-value=0.098  Score=39.68  Aligned_cols=24  Identities=17%  Similarity=0.050  Sum_probs=21.7

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      .+.-||..|||.+|.||+|+|+-.
T Consensus        55 eA~~Ai~~Ln~~~l~gr~I~V~~A   78 (89)
T 2wbr_A           55 EANKAQMALNNCVLANTTIFAESP   78 (89)
T ss_dssp             HHHHHHHHHTTEEETTEEEEEECC
T ss_pred             HHHHHHHHhcCCEECCcEEEEEEC
Confidence            566799999999999999999877

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=88.23  E-value=0.17  Score=35.80  Aligned_cols=25  Identities=32%  Similarity=0.797  Sum_probs=22.3

Q ss_pred             hhhhhHhhhcCCCCCCCCCccccccc
Q 026836           67 ERGVCRAFQRGECTRGDGCKFSHNEQ   92 (232)
Q Consensus        67 ~~~v~~alq~~~C~~~~~ck~sh~~q   92 (232)
                      .-.||.-|+.|.|+++ .|+|.|+.+
T Consensus        41 ~~~vC~~flkG~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A           41 TVTVCMDYIKGRCSRE-KCKYFHPPA   65 (70)
T ss_dssp             EEEBCHHHHTTCCCCT-TCCSBCCCH
T ss_pred             cceeccccCcCCCCCC-CcCeeCCHH
Confidence            4679999999999999 999999754

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.62  E-value=0.14  Score=39.13  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=19.2

Q ss_pred             eeeeeeeecCCCceecCceeEeccc
Q 026836           23 IFSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      -|+..|+. |||++|.||+|+|...
T Consensus        60 ~sAlaAi~-mnG~~v~Gr~LkV~lk   83 (91)
T 2dnr_A           60 SSALNVLS-LNGKELLNRTITIALK   83 (91)
T ss_dssp             HHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred             HHHHHHHh-cCCeEeCCeEEEEEeC
Confidence            34555665 9999999999999754

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=85.42  E-value=0.3  Score=36.24  Aligned_cols=25  Identities=28%  Similarity=0.623  Sum_probs=22.5

Q ss_pred             hhhhhHhhhcCCCCCCCCCccccccc
Q 026836           67 ERGVCRAFQRGECTRGDGCKFSHNEQ   92 (232)
Q Consensus        67 ~~~v~~alq~~~C~~~~~ck~sh~~q   92 (232)
                      .-.||.-|+.|.|.++ .|+|+|+-+
T Consensus        42 ~~~vC~dflkG~C~r~-~C~y~H~~~   66 (83)
T 3d2n_A           42 RVIACFDSLKGRCSRE-NCKYLHPPP   66 (83)
T ss_dssp             EEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred             ceeehhHhhhccccCC-CcceeCChH
Confidence            5689999999999999 999999854

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=85.38  E-value=0.18  Score=35.59  Aligned_cols=24  Identities=21%  Similarity=0.015  Sum_probs=21.3

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      ++..||..|||..|.|++|+|...
T Consensus        64 ~A~~Ai~~l~g~~~~gr~l~V~~a   87 (96)
T 2dgx_A           64 DAIGAVNSLHRYKIGSKKILVSLA   87 (96)
T ss_dssp             HHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             HHHHHHHHhCCCEECCeEEEEEEc
Confidence            456788999999999999999987

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=85.02  E-value=0.21  Score=37.36  Aligned_cols=30  Identities=17%  Similarity=0.226  Sum_probs=23.4

Q ss_pred             eeeeeeecCCCceecCceeEeccccccccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHVAKYKKK   53 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv~~Yk~~   53 (232)
                      ++..||..|||..|.|++|+|.+...-+++
T Consensus       104 ~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~  133 (143)
T 3egn_A          104 AAAKALKEANGYVLFGKPMVVQFARSARPK  133 (143)
T ss_dssp             HHHHHHHHHTTBEETTEECEEEECCCSCC-
T ss_pred             HHHHHHHHhCCCEeCCcEEEEEECCCCCCc
Confidence            455688899999999999999988443433

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=84.47  E-value=0.19  Score=36.20  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=21.2

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      ++..||..|||..|.|++|+|.+.
T Consensus        73 ~A~~Ai~~lng~~~~gr~l~V~~A   96 (99)
T 4fxv_A           73 DAERAINTLNGLRLQSKTIKVSYA   96 (99)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEEC
T ss_pred             HHHHHHHHhCCCEECCEEEEEEEe
Confidence            456789999999999999999875

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.23  E-value=0.36  Score=36.71  Aligned_cols=26  Identities=31%  Similarity=0.751  Sum_probs=23.0

Q ss_pred             HhhhhhHhhhcCCCCCCCCCccccccc
Q 026836           66 EERGVCRAFQRGECTRGDGCKFSHNEQ   92 (232)
Q Consensus        66 e~~~v~~alq~~~C~~~~~ck~sh~~q   92 (232)
                      +.-.||.-|+.|.|+++ .|+|.|+.+
T Consensus        54 ~~~~vC~~flkG~C~r~-~C~y~H~~~   79 (98)
T 2e5s_A           54 NTVTVCMDYIKGRCMRE-KCKYFHPPA   79 (98)
T ss_dssp             CEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred             CccccchhhccCCCCCC-CcCccCChH
Confidence            45679999999999999 999999864

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=84.01  E-value=0.21  Score=36.89  Aligned_cols=25  Identities=16%  Similarity=0.114  Sum_probs=21.7

Q ss_pred             eeeeeeeecCCCceecCceeEeccc
Q 026836           23 IFSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      -++..||.+|||..|.|++|+|++.
T Consensus        59 ~~A~~Ai~~lng~~~~gr~i~V~~a   83 (110)
T 3s8s_A           59 RGAKETVKNLHLTSVMGNIIHAQLD   83 (110)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             HHHHHHHHHhCCCEECCeEEEEEEC
Confidence            3456689999999999999999987

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.01  E-value=0.19  Score=38.78  Aligned_cols=27  Identities=11%  Similarity=0.177  Sum_probs=23.7

Q ss_pred             cceeeeeeeecCCCceecCceeEeccc
Q 026836           21 KAIFSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        21 ~~~StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      .+-++..|+.+|||..|.||+|+|++.
T Consensus        55 ~~esA~~A~~~l~G~~l~gr~i~v~~A   81 (96)
T 2diu_A           55 NQDSAERAQKRMENEDVFGNRIIVSFT   81 (96)
T ss_dssp             SHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred             CHHHHHHHHHHhcCCccCCceEEEEec
Confidence            445666899999999999999999998

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=82.08  E-value=0.47  Score=32.01  Aligned_cols=22  Identities=9%  Similarity=0.258  Sum_probs=19.0

Q ss_pred             eeeeeeecCCCceecCceeEecc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDH   46 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDH   46 (232)
                      ++..|+ .|||..|.|++|+|.+
T Consensus        65 ~a~~A~-~l~g~~~~g~~l~V~r   86 (87)
T 2hzc_A           65 ETTQAM-AFDGIIFQGQSLKIRR   86 (87)
T ss_dssp             HHHHHG-GGTTCEETTEECEEEC
T ss_pred             HHHHHH-hcCCCEECCeEEEEeC
Confidence            455788 9999999999999975

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=81.85  E-value=0.42  Score=34.22  Aligned_cols=27  Identities=19%  Similarity=0.254  Sum_probs=22.7

Q ss_pred             eeeeeeecCCCceecCc-eeEecccccc
Q 026836           24 FSRFLPNNLNGAQILGR-TIRVDHVAKY   50 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR-~irVDHv~~Y   50 (232)
                      ++..||..|||..|.|+ +|+|.....+
T Consensus        73 ~A~~Ai~~l~g~~~~g~~~l~V~~a~~~  100 (105)
T 2nlw_A           73 HAVDAVKNADGYKLDKQHTFRVNLFTDF  100 (105)
T ss_dssp             HHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred             HHHHHHHHhCCcccCCCceEEEEEcchH
Confidence            45678899999999999 9999887544

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.73  E-value=0.2  Score=38.70  Aligned_cols=23  Identities=13%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             eeeeeeeecCCCceecCceeEecc
Q 026836           23 IFSRFLPNNLNGAQILGRTIRVDH   46 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irVDH   46 (232)
                      -|+..|+. |||.+|.||+|+|..
T Consensus        69 ~sAl~AI~-ldG~~v~Gr~L~V~~   91 (95)
T 1ufw_A           69 HSALSVLD-VDGMKVKGRAVKISG   91 (95)
T ss_dssp             HHHHHHHH-GGGSEETTEEEEEEC
T ss_pred             HHHHHHHh-cCCeeeCCeEEEEec
Confidence            35566786 999999999999965

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=81.63  E-value=0.34  Score=35.10  Aligned_cols=24  Identities=17%  Similarity=0.068  Sum_probs=21.4

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      ++..||..|||..|.|++|+|.+.
T Consensus        75 ~A~~Ai~~lng~~~~gr~l~V~~a   98 (111)
T 2cpi_A           75 DALRAIQCVNNVVVDGRTLKASLG   98 (111)
T ss_dssp             HHHHHHHHHTTEEETTEEEEEESC
T ss_pred             HHHHHHHHhCCCEECCEEEEEEec
Confidence            456788899999999999999987

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=81.26  E-value=0.18  Score=38.72  Aligned_cols=25  Identities=8%  Similarity=0.158  Sum_probs=22.2

Q ss_pred             eeeeeeeecCCCceecCceeEeccc
Q 026836           23 IFSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      -++..||.+|||..|.|++|+|...
T Consensus        83 ~~A~~Ai~~lng~~l~gr~l~V~~a  107 (127)
T 2a3j_A           83 ESAQAFVEAFQGYPFQGNPLVITFS  107 (127)
T ss_dssp             HHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred             HHHHHHHHHHCCCEeCCCEEEEEEc
Confidence            3567789999999999999999987

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=81.19  E-value=0.21  Score=34.66  Aligned_cols=25  Identities=20%  Similarity=0.117  Sum_probs=21.3

Q ss_pred             eeeeeeecCCCceecCceeEecccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHVA   48 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv~   48 (232)
                      ++..||..|||..|.|+.|+|.+..
T Consensus        57 ~a~~Ai~~l~g~~~~gr~i~V~~~~   81 (90)
T 3p5t_L           57 SSKKLMDLLPKRELHGQNPVVTPSN   81 (90)
T ss_dssp             HHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred             HHHHHHHHcCCCeeCCEEEEEEECC
Confidence            4456889999999999999999884

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.86  E-value=0.25  Score=34.20  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=20.8

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      .+..||..|||..|.|++|+|.+.
T Consensus        66 ~a~~Ai~~l~g~~~~g~~l~V~~a   89 (96)
T 2e44_A           66 QARQALDKLNGFQLENFTLKVAYI   89 (96)
T ss_dssp             HHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred             HHHHHHHHhCCCEECCcEEEEEEc
Confidence            355688899999999999999977

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=80.66  E-value=0.35  Score=33.39  Aligned_cols=24  Identities=8%  Similarity=0.019  Sum_probs=21.0

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      ++..||..|||..|.|++|+|.+.
T Consensus        52 ~a~~Ai~~l~g~~~~g~~l~V~~a   75 (88)
T 1wg1_A           52 QAQNAIQMFHQYSFRGKDLIVQLQ   75 (88)
T ss_dssp             HHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             HHHHHHHHhCCCeECCcEEEEEEc
Confidence            455788899999999999999876

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.47  E-value=0.62  Score=34.35  Aligned_cols=24  Identities=33%  Similarity=1.056  Sum_probs=22.3

Q ss_pred             hhhHhhhcCCCCCCCCCccccccc
Q 026836           69 GVCRAFQRGECTRGDGCKFSHNEQ   92 (232)
Q Consensus        69 ~v~~alq~~~C~~~~~ck~sh~~q   92 (232)
                      .+|..|+.|.|.-|+-|.|.|.+.
T Consensus        21 ~LC~~~~~G~C~~G~~C~FAHG~~   44 (69)
T 2d9m_A           21 SICDRYMNGTCPEGNSCKFAHGNA   44 (69)
T ss_dssp             SBCHHHHHSCCSSCSSCSSBSSHH
T ss_pred             ccCcccCcCCCCCCCccCCcCCHH
Confidence            789999999999999999999864

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=80.04  E-value=0.5  Score=33.06  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=21.7

Q ss_pred             eeeeeeecCCCceecCceeEecccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHVA   48 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv~   48 (232)
                      ++..||..|||..|.|++|+|.+..
T Consensus        61 ~a~~Ai~~l~g~~~~g~~l~v~~a~   85 (97)
T 1x5p_A           61 SADQAVAELNGTQVESVQLKVNIAR   85 (97)
T ss_dssp             HHHHHHHHTTTEEETTEEEEEECCS
T ss_pred             HHHHHHHHhCCCeECCeEEEEEECC
Confidence            4567888999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	91.83
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	89.67
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	89.16
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	88.74
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	88.6
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	86.84
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	86.21
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	86.06
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	85.39
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	84.9
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	84.89
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	84.74
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	83.98
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	83.93
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	83.67
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	83.54
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	83.48
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	82.88
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	82.74
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	82.57
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	82.54
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	82.03
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	81.85
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	81.8
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	81.47
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	81.07
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	80.77
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	80.44
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	80.19
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	80.11
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	80.05

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.02  Score=38.99  Aligned_cols=28  Identities=11%  Similarity=0.279  Sum_probs=23.6

Q ss_pred             eeeeecCCCceecCceeEecccccccccc
Q 026836           26 RFLPNNLNGAQILGRTIRVDHVAKYKKKE   54 (232)
Q Consensus        26 iLAVDNlNG~~v~GR~irVDHv~~Yk~~~   54 (232)
                      ..|+ +|||..|.|+.|+|.+...|.++.
T Consensus        62 ~~a~-~l~g~~~~Gr~l~V~r~k~~~p~p   89 (90)
T d1u2fa_          62 TQAM-AFDGIIFQGQSLKIRRPHDYQPLP   89 (90)
T ss_dssp             TTGG-GGSSCCSSSSCCCCBCTTCCSCCC
T ss_pred             HHHH-hhCCcEECCEEEEECCCCCCCCcc
Confidence            3456 699999999999999998888763

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.67  E-value=0.071  Score=33.65  Aligned_cols=24  Identities=33%  Similarity=0.956  Sum_probs=19.8

Q ss_pred             hhhHhhhc-CCCCCCCCCccccccc
Q 026836           69 GVCRAFQR-GECTRGDGCKFSHNEQ   92 (232)
Q Consensus        69 ~v~~alq~-~~C~~~~~ck~sh~~q   92 (232)
                      ..|+.|++ |.|..|+.|.|+|.++
T Consensus        10 ~lC~~~~~~g~C~~G~~C~FAHg~~   34 (40)
T d1m9oa_          10 ELCRTYSESGRCRYGAKCQFAHGLG   34 (40)
T ss_dssp             CCCSGGGGTSCCTTTTTCSSCSSSC
T ss_pred             ccChhhhcCCcCCCCCCCCCCCCHH
Confidence            36888875 7899999999999653

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.16  E-value=0.028  Score=38.49  Aligned_cols=24  Identities=13%  Similarity=0.257  Sum_probs=21.6

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      ++..||..|||..|.||+|+|...
T Consensus        70 ~a~~Ai~~l~g~~~~gr~i~V~~a   93 (101)
T d2cpea1          70 TAKAAVEWFDGKDFQGSKLKVSLA   93 (101)
T ss_dssp             HHHHHHHHHTTCEETTEECEEECS
T ss_pred             HHHHHHHHhCCCEECCEEEEEEEc
Confidence            456789999999999999999998

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=0.064  Score=37.57  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=22.0

Q ss_pred             eeeeeeecCCCceecCceeEecccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHVA   48 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv~   48 (232)
                      .+..||+.|||..|.|++|+|+...
T Consensus        62 ~A~~Ai~~lng~~~~g~~l~V~~a~   86 (98)
T d1wf2a_          62 NARAAVAGEDGRMIAGQVLDINLAA   86 (98)
T ss_dssp             HHHHHHHTTTTCEETTEECEEEETT
T ss_pred             HHHHHHHHcCCCEECCEEEEEEECC
Confidence            4567899999999999999999874

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.60  E-value=0.039  Score=38.79  Aligned_cols=27  Identities=15%  Similarity=0.086  Sum_probs=23.2

Q ss_pred             ceeeeeeeecCCCceecCceeEecccc
Q 026836           22 AIFSRFLPNNLNGAQILGRTIRVDHVA   48 (232)
Q Consensus        22 ~~StiLAVDNlNG~~v~GR~irVDHv~   48 (232)
                      .-++..||..|||..|.|++|+|.+..
T Consensus        56 ~~~A~~Ai~~l~g~~~~gr~l~V~~a~   82 (114)
T d2f9da1          56 IFDAKNACDHLSGFNVCNRYLVVLYYN   82 (114)
T ss_dssp             HHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             HHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            345668999999999999999999873

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.84  E-value=0.055  Score=36.11  Aligned_cols=24  Identities=17%  Similarity=0.141  Sum_probs=21.4

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      ++..|+..|||..|.|++|+|...
T Consensus        54 ~a~~ai~~l~g~~~~gr~i~v~~a   77 (80)
T d1cvja1          54 DAERALDTMNFDVIKGKPVRIMWS   77 (80)
T ss_dssp             HHHHHHTTSTTCEETTEECEEEEC
T ss_pred             HHHHHHHHcCCCEECCEEEEEEEe
Confidence            567789999999999999999865

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.21  E-value=0.068  Score=36.36  Aligned_cols=24  Identities=42%  Similarity=0.577  Sum_probs=21.4

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      ++..||..|||..|.|++|+|++.
T Consensus        61 ~A~~A~~~lng~~l~g~~l~V~~a   84 (88)
T d1rk8a_          61 QALAAKEALNGAEIMGQTIQVDWC   84 (88)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEES
T ss_pred             HHHHHHHHcCCCEECCEEEEEEEe
Confidence            456789999999999999999886

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.06  E-value=0.045  Score=37.60  Aligned_cols=22  Identities=18%  Similarity=0.104  Sum_probs=19.4

Q ss_pred             eeeeeeeecCCCceecCceeEe
Q 026836           23 IFSRFLPNNLNGAQILGRTIRV   44 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irV   44 (232)
                      -++..||.+|||..|.||+|+|
T Consensus        67 ~~A~~Ai~~lng~~~~gr~lkv   88 (89)
T d2cpia1          67 EDALRAIQCVNNVVVDGRTLKA   88 (89)
T ss_dssp             HHHHHHHHHHTTEEETTEEEEE
T ss_pred             hhHHHHHHHhCCCEECCEEEEE
Confidence            3567789999999999999998

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.39  E-value=0.064  Score=35.71  Aligned_cols=24  Identities=25%  Similarity=0.245  Sum_probs=21.4

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      ++..|+..|||..|.|++|+|++.
T Consensus        53 ~a~~Ai~~~~g~~~~gr~l~v~~a   76 (83)
T d1x5ta1          53 ASDAAIEAMNGQYLCNRPITVSYA   76 (83)
T ss_dssp             HHHHHHHTTTTCEETTEECEEEES
T ss_pred             HHHHHHHhCCCcEECCEEEEEEEe
Confidence            456789999999999999999986

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.90  E-value=0.037  Score=38.36  Aligned_cols=28  Identities=7%  Similarity=-0.006  Sum_probs=23.8

Q ss_pred             ceeeeeeeecCCCceecCceeEeccccc
Q 026836           22 AIFSRFLPNNLNGAQILGRTIRVDHVAK   49 (232)
Q Consensus        22 ~~StiLAVDNlNG~~v~GR~irVDHv~~   49 (232)
                      .-++..||..|||..|.|++|.|++...
T Consensus        56 ~~~A~~A~~~lng~~~~gr~l~v~~a~~   83 (111)
T d1whxa_          56 PLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             HHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             HHHHHHHHHHHcCCccCCCeEEEEECCC
Confidence            3467789999999999999999998743

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.89  E-value=0.05  Score=36.94  Aligned_cols=27  Identities=19%  Similarity=0.190  Sum_probs=23.6

Q ss_pred             cceeeeeeeecCCCceecCceeEeccc
Q 026836           21 KAIFSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        21 ~~~StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      ..-++..|+.+|||..|.|++|.|.+.
T Consensus        52 ~~~~A~~a~~~l~~~~l~g~~l~V~~A   78 (85)
T d2u2fa_          52 DINVTDQAIAGLNGMQLGDKKLLVQRA   78 (85)
T ss_dssp             SSHHHHHHHHTSSSCCCSSSCCEEEEC
T ss_pred             CHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            344677899999999999999999988

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.74  E-value=0.06  Score=37.13  Aligned_cols=30  Identities=23%  Similarity=0.347  Sum_probs=24.3

Q ss_pred             eeeeeeee--cCCCceecCceeEecccccccc
Q 026836           23 IFSRFLPN--NLNGAQILGRTIRVDHVAKYKK   52 (232)
Q Consensus        23 ~StiLAVD--NlNG~~v~GR~irVDHv~~Yk~   52 (232)
                      -++.-||+  |++|+.|.|++|+|++...|+.
T Consensus        56 ~~A~~A~~~l~~~~~~~~gr~l~V~~s~~~~~   87 (89)
T d1x4da1          56 EDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR   87 (89)
T ss_dssp             HHHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred             hhHHHHHHHHhhCCCccCCceEEEEECCCccc
Confidence            34566888  5689999999999999977764

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.98  E-value=0.06  Score=35.55  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=21.3

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      ++..||..|||..|.|++|+|++.
T Consensus        56 ~a~~a~~~l~g~~~~g~~l~v~~A   79 (82)
T d1fxla1          56 DAEKAINTLNGLRLQTKTIKVSYA   79 (82)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEEC
T ss_pred             HHHHHHHHhCCCEECCEEEEEEEe
Confidence            466789999999999999999875

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.93  E-value=0.072  Score=38.68  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=22.4

Q ss_pred             eeeeeeeecCCCceecCceeEeccc
Q 026836           23 IFSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      -++..||.+|||+.|.||.|+|...
T Consensus        95 ~~A~~Ai~~lng~~~~gr~l~V~~a  119 (139)
T d1u6fa1          95 SSAQQAIAGLNGFNILNKRLKVALA  119 (139)
T ss_dssp             HHHHHHHHHTTTEECSSCEEEEEES
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEc
Confidence            4567889999999999999999887

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.67  E-value=0.097  Score=35.51  Aligned_cols=25  Identities=16%  Similarity=0.147  Sum_probs=21.7

Q ss_pred             eeeeeeeecCCCceecCceeEeccc
Q 026836           23 IFSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      -++..||..|||..|.|+.|+|.+.
T Consensus        59 ~~A~~Ai~~l~g~~~~g~~i~V~~a   83 (89)
T d1cvja2          59 EAAERAIEKMNGMLLNDRKVFVGRF   83 (89)
T ss_dssp             HHHHHHTTSSSEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEC
Confidence            3456789999999999999999876

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.54  E-value=0.079  Score=36.04  Aligned_cols=25  Identities=8%  Similarity=-0.104  Sum_probs=22.2

Q ss_pred             eeeeeeeecCCCceecCceeEeccc
Q 026836           23 IFSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      -.+..||..|||..|.|++|+|.+.
T Consensus        61 ~~A~~Ai~~l~g~~~~g~~i~v~~a   85 (90)
T d2cq0a1          61 EDAARAIAGVSGFGYDHLILNVEWA   85 (90)
T ss_dssp             HHHHHHHHHTTTCEETTEECEEEES
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEee
Confidence            3577899999999999999999876

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=83.48  E-value=0.11  Score=35.67  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=21.4

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      ++..|+..|||..|.|++|+|+++
T Consensus        65 ~A~~A~~~l~~~~~~gr~i~V~~a   88 (96)
T d1fjca_          65 DAEKNLEEKQGAEIDGRSVSLYYT   88 (96)
T ss_dssp             HHHHHHHHTTEEEETTEEEEEEEC
T ss_pred             HHHHHHHHcCCCEECCEEEEEEEe
Confidence            456788999999999999999987

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=82.88  E-value=0.12  Score=34.17  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=20.9

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      ++..|+..|||..|.|++|+|.+.
T Consensus        56 ~A~~ai~~lng~~~~g~~l~v~~a   79 (82)
T d1b7fa1          56 DSQRAIKVLNGITVRNKRLKVSYA   79 (82)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEEC
T ss_pred             HHHHHHHHhCCCEECCEEEEEEEc
Confidence            456689999999999999999865

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.74  E-value=0.057  Score=36.08  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=22.1

Q ss_pred             eeeeeeeecCCCceecCceeEeccc
Q 026836           23 IFSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      -++..||..|||..|.|++|+|...
T Consensus        50 ~~A~~Ai~~lng~~~~g~~l~V~~a   74 (79)
T d2bz2a1          50 ESADQAVAELNGTQVESVQLKVNIA   74 (79)
T ss_dssp             HHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEe
Confidence            3566789999999999999999887

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.57  E-value=0.17  Score=34.67  Aligned_cols=29  Identities=28%  Similarity=0.323  Sum_probs=23.5

Q ss_pred             eeeeeeecCCCceecCceeEecccccccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHVAKYKK   52 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv~~Yk~   52 (232)
                      ++..||..|||..|.|++|+|+....++.
T Consensus        61 ~A~~Ai~~l~g~~~~gr~i~V~~a~~~~~   89 (93)
T d1h2vz_          61 DAENAMRYINGTRLDDRIIRTDWDAGFKE   89 (93)
T ss_dssp             HHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred             HHHHHHHHhCCCEECCEEEEEEEcCCCCC
Confidence            45678889999999999999998754443

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.54  E-value=0.11  Score=36.97  Aligned_cols=25  Identities=12%  Similarity=0.215  Sum_probs=22.3

Q ss_pred             eeeeeeeecCCCceecCceeEeccc
Q 026836           23 IFSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      -+++.||..|||..|.|++|+|+..
T Consensus        57 ~~A~~Ai~~lng~~~~g~~l~v~~a   81 (104)
T d1weya_          57 LSAADARLRLHKTEFLGKEMKLYFA   81 (104)
T ss_dssp             THHHHHHHTSTTSEETTEECEEECC
T ss_pred             HHHHHHHHHhcccccCCCEeEEeec
Confidence            3567899999999999999999876

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.03  E-value=0.085  Score=35.89  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=22.2

Q ss_pred             eeeeeeeecCCCceecCceeEeccc
Q 026836           23 IFSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      -++..||..|||..|.|+.|+|++.
T Consensus        59 ~~A~~A~~~l~~~~~~g~~i~v~~a   83 (90)
T d2cqia1          59 RDAAAALAAMNGRKILGKEVKVNWA   83 (90)
T ss_dssp             HHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEc
Confidence            3566789999999999999999987

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.85  E-value=0.21  Score=30.58  Aligned_cols=25  Identities=40%  Similarity=0.946  Sum_probs=21.2

Q ss_pred             hhhhHhhhc-CCCCCCCCCccccccc
Q 026836           68 RGVCRAFQR-GECTRGDGCKFSHNEQ   92 (232)
Q Consensus        68 ~~v~~alq~-~~C~~~~~ck~sh~~q   92 (232)
                      ..+|+.|.. |.|.-|+-|.|.|.++
T Consensus         8 T~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           8 TELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             CSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             chhccccCCCCcCCCCCcccCcCCCC
Confidence            347888976 7799999999999875

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.80  E-value=0.11  Score=35.55  Aligned_cols=26  Identities=15%  Similarity=0.033  Sum_probs=22.7

Q ss_pred             eeeeeeeecCCCceecCceeEecccc
Q 026836           23 IFSRFLPNNLNGAQILGRTIRVDHVA   48 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irVDHv~   48 (232)
                      -++.+||..|||..|.|++|+|....
T Consensus        64 e~a~~Ai~~l~g~~~~g~~l~V~~a~   89 (95)
T d1x4aa1          64 RDAEDAVYGRDGYDYDGYRLRVEFPR   89 (95)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEecc
Confidence            45678999999999999999999863

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.47  E-value=0.13  Score=34.12  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=21.2

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      .+..||..|||..|.|++|+|+.+
T Consensus        53 ~A~~Ai~~l~g~~l~g~~l~V~~a   76 (78)
T d1no8a_          53 DALKAMKQYNGVPLDGRPMNIQLV   76 (78)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEEE
T ss_pred             HHHHHHHHhCCCEECCEEEEEEEe
Confidence            556789999999999999999865

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.07  E-value=0.24  Score=30.48  Aligned_cols=24  Identities=38%  Similarity=1.053  Sum_probs=20.4

Q ss_pred             hhhHhhhc-CCCCCCCCCccccccc
Q 026836           69 GVCRAFQR-GECTRGDGCKFSHNEQ   92 (232)
Q Consensus        69 ~v~~alq~-~~C~~~~~ck~sh~~q   92 (232)
                      ..|+.|++ |.|..|+.|.|.|.++
T Consensus         7 ~lC~~~~~~g~C~~G~~C~FAHg~~   31 (36)
T d1rgoa1           7 ELCRPFEESGTCKYGEKCQFAHGFH   31 (36)
T ss_dssp             SBCHHHHHHSCCTTGGGCSSBSSGG
T ss_pred             hhCcchhcCCcCCCCCcCCCcCCHH
Confidence            47888864 7899999999999875

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.77  E-value=0.16  Score=34.54  Aligned_cols=24  Identities=8%  Similarity=0.019  Sum_probs=21.4

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      .+..||..|||..|.|++|+|...
T Consensus        52 ~A~~Ai~~ln~~~~~G~~l~V~~a   75 (88)
T d1wg1a_          52 QAQNAIQMFHQYSFRGKDLIVQLQ   75 (88)
T ss_dssp             HHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             HHHHHHHHhCCCEECCEEEEEEEc
Confidence            456789999999999999999876

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.44  E-value=0.098  Score=35.02  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             eeeeeeecCCC-ceecCceeEeccc
Q 026836           24 FSRFLPNNLNG-AQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG-~~v~GR~irVDHv   47 (232)
                      ++..||..||| +.|.|++|+|.+.
T Consensus        49 ~A~~Ai~~lng~~~~~G~~i~V~~a   73 (80)
T d2cqha1          49 WAIRAIETLSGKVELHGKIMEVDYS   73 (80)
T ss_dssp             HHHHHHHHHTTTCEETTEECEEEEC
T ss_pred             HHHHHHHHhCCCeEECCEEEEEEEc
Confidence            45678999999 5899999999987

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.19  E-value=0.23  Score=34.68  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=20.8

Q ss_pred             eeeeeeecCCCceecCceeEeccc
Q 026836           24 FSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        24 StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      ++.-||..|||..+.||+|+|++.
T Consensus        69 ~A~~A~~~lng~~~~gr~i~v~~~   92 (99)
T d2dita1          69 EADYCIQTLDGRWFGGRQITAQAW   92 (99)
T ss_dssp             HHHHHHHHSTTCEETTEECEEEEC
T ss_pred             HHHHHHHHhCCcEECCEEEEEEEe
Confidence            455689999999999999999864

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.11  E-value=0.24  Score=29.96  Aligned_cols=25  Identities=28%  Similarity=0.914  Sum_probs=22.2

Q ss_pred             hhhhhHhhhcCCCCCCCCCcccccc
Q 026836           67 ERGVCRAFQRGECTRGDGCKFSHNE   91 (232)
Q Consensus        67 ~~~v~~alq~~~C~~~~~ck~sh~~   91 (232)
                      .+++|.-..+|-|++++-|.|-|++
T Consensus         5 kkelCKfYvqGyCtrgenC~ymH~e   29 (29)
T d2cqea2           5 KRELCKFYITGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCSBCTTTTTTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhheeeeecCCcCcccccCC
Confidence            3578999999999999999999975

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.05  E-value=0.11  Score=36.20  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=21.7

Q ss_pred             eeeeeeeecCCCceecCceeEeccc
Q 026836           23 IFSRFLPNNLNGAQILGRTIRVDHV   47 (232)
Q Consensus        23 ~StiLAVDNlNG~~v~GR~irVDHv   47 (232)
                      -.+..||..|||..|.|++|+|...
T Consensus        71 ~~A~~Ai~~lng~~~~g~~i~V~~a   95 (102)
T d2cpza1          71 VSAQAAIQSMNGFQIGMKRLKVQLK   95 (102)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEECC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEe
Confidence            3466789999999999999999876