Citrus Sinensis ID: 026849

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MIMDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIFHDHHHHHDSGAVSGVDHSHRKLIVL
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHccEEEEc
Coil and Loop (DISEMBL)
MIMDGLSAEDLSTIGGIATVSLLHsfipthwlpfsivgrAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFIsgkgghshshnqPMEKMAVAGLVLvpalspcattlpVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYgasqlkfhwveRYDKLLVGSVLCLVGILTLIfhdhhhhhdsgavsgvdhshrklivl
Flexible Loop (DISEMBL)
MIMDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIFHDHHHHHdsgavsgvdhSHRKLIVL
Low Complexity Region (SEG)
MIMDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKlaslllvvlggsyillFISGKGGHSHSHNQPMEKMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIFhdhhhhhdSGAVSGVDHSHRKLIVL
Disordered region (IsUnstruct)
**********LSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGK*************MAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIF*************************
Disordered Region (DISOPRED)
*******AEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGK*************MAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIFHDHHH***********HSHRKLIVL
Disordered Region (DISEMBL)
MIMDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIFHDHHHHHDSGAVSGVDHSHRKLIVL
Disordered Region (DISPRO)
***DGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIFHDH*********SG***S****I**
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIMDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIFHDHHHHHDSGAVSGVDHSHRKLIVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
225436019	245	PREDICTED: uncharacterized protein LOC10	0.987	0.934	0.870	1e-108
296083971	228	unnamed protein product [Vitis vinifera]	0.982	1.0	0.873	1e-108
359807664	226	uncharacterized protein LOC100789121 [Gl	0.974	1.0	0.873	1e-106
357493583	223	hypothetical protein MTR_5g087720 [Medic	0.961	1.0	0.879	1e-106
224131734	228	predicted protein [Populus trichocarpa]	0.974	0.991	0.872	1e-106
388523095	223	unknown [Medicago truncatula]	0.961	1.0	0.875	1e-105
358249116	228	uncharacterized protein LOC100808307 [Gl	0.982	1.0	0.865	1e-105
297808165	225	hypothetical protein ARALYDRAFT_489018 [	0.965	0.995	0.865	1e-105
15242149	225	uncharacterized protein [Arabidopsis tha	0.965	0.995	0.865	1e-105
21593186	225	unknown [Arabidopsis thaliana]	0.965	0.995	0.861	1e-104

>gi|225436019|ref|XP_002273816.1| PREDICTED: uncharacterized protein LOC100259771 [Vitis vinifera]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/231 (87%), Positives = 215/231 (93%), Gaps = 2/231 (0%)

Query: 2   IMDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVL 61
           +M+  +AEDLS IGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLS+TLFVTAFGA+LHV+
Sbjct: 17  VMEAFTAEDLSKIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSKTLFVTAFGAILHVI 76

Query: 62  STSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMA 121
           STSLLG+TAITMAN+IAGE+TVHKLASLLLV+LGGSYILLF++GKGGHSHSHNQPMEKMA
Sbjct: 77  STSLLGVTAITMANSIAGEETVHKLASLLLVILGGSYILLFLAGKGGHSHSHNQPMEKMA 136

Query: 122 VAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLK 181
           VAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLL STITVMTSLVALSFYGASQLK
Sbjct: 137 VAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLFSTITVMTSLVALSFYGASQLK 196

Query: 182 FHWVERYDKLLVGSVLCLVGILTLIFHDHHHHHDSGAVSGVDHSHRKLIVL 232
           FHWVERYDKLLVGSVLCLVG+LTLIFHD  H HD    S     +RKLIVL
Sbjct: 197 FHWVERYDKLLVGSVLCLVGVLTLIFHD--HDHDGHGSSTAGQLNRKLIVL 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083971|emb|CBI24359.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/230 (87%), Positives = 214/230 (93%), Gaps = 2/230 (0%)

Query: 3   MDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLS 62
           M+  +AEDLS IGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLS+TLFVTAFGA+LHV+S
Sbjct: 1   MEAFTAEDLSKIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSKTLFVTAFGAILHVIS 60

Query: 63  TSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAV 122
           TSLLG+TAITMAN+IAGE+TVHKLASLLLV+LGGSYILLF++GKGGHSHSHNQPMEKMAV
Sbjct: 61  TSLLGVTAITMANSIAGEETVHKLASLLLVILGGSYILLFLAGKGGHSHSHNQPMEKMAV 120

Query: 123 AGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKF 182
           AGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLL STITVMTSLVALSFYGASQLKF
Sbjct: 121 AGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLFSTITVMTSLVALSFYGASQLKF 180

Query: 183 HWVERYDKLLVGSVLCLVGILTLIFHDHHHHHDSGAVSGVDHSHRKLIVL 232
           HWVERYDKLLVGSVLCLVG+LTLIFHD  H HD    S     +RKLIVL
Sbjct: 181 HWVERYDKLLVGSVLCLVGVLTLIFHD--HDHDGHGSSTAGQLNRKLIVL 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807664|ref|NP_001240915.1| uncharacterized protein LOC100789121 [Glycine max] gi|255647642|gb|ACU24284.1| unknown [Glycine max]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/230 (87%), Positives = 212/230 (92%), Gaps = 4/230 (1%)

Query: 3   MDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLS 62
           M G +AEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLS TL VTA GA+LHV+S
Sbjct: 1   MGGFTAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSTTLIVTALGAILHVIS 60

Query: 63  TSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAV 122
           TSLLGITAITMANTIAGE+TVHK+ASLLLV LGGSYI+LF+ GKGGHSHSHNQPMEKMAV
Sbjct: 61  TSLLGITAITMANTIAGEETVHKVASLLLVFLGGSYIMLFLMGKGGHSHSHNQPMEKMAV 120

Query: 123 AGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKF 182
           AGL+LVPALSPCATTLPVFLAVGNSSSMMVLAIIVLL STITVMTSLVALSFYGASQLKF
Sbjct: 121 AGLILVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLFSTITVMTSLVALSFYGASQLKF 180

Query: 183 HWVERYDKLLVGSVLCLVGILTLIFHDHHHHHDSGAVSGVDHSHRKLIVL 232
           HWVERYDKLLVGSVLCLVGILTL+FHDH H     AV+   HSHRK+I L
Sbjct: 181 HWVERYDKLLVGSVLCLVGILTLLFHDHDHE----AVTIGQHSHRKIISL 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493583|ref|XP_003617080.1| hypothetical protein MTR_5g087720 [Medicago truncatula] gi|355518415|gb|AET00039.1| hypothetical protein MTR_5g087720 [Medicago truncatula]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/224 (87%), Positives = 211/224 (94%), Gaps = 1/224 (0%)

Query: 3   MDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLS 62
           M+  +AEDLSTIGGIATVS+LHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGA+LHV+S
Sbjct: 1   MNSFTAEDLSTIGGIATVSILHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAILHVIS 60

Query: 63  TSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAV 122
           TSLLGITAITMANTIAGE+TVHKLASLLLV LGG YI+LF+ GKGGHSHSHNQPMEKMAV
Sbjct: 61  TSLLGITAITMANTIAGEETVHKLASLLLVFLGGMYIILFLMGKGGHSHSHNQPMEKMAV 120

Query: 123 AGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKF 182
           AGL+LVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTI+VMTSLVALSFYGASQLKF
Sbjct: 121 AGLILVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTISVMTSLVALSFYGASQLKF 180

Query: 183 HWVERYDKLLVGSVLCLVGILTLIFHDHHHHHDSGAVSGVDHSH 226
           HWVERYDKLLVGSVLCLVG+LTL+FHDH H+H   A  G +H H
Sbjct: 181 HWVERYDKLLVGSVLCLVGVLTLMFHDHDHNHGEVASVG-EHLH 223

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131734|ref|XP_002328095.1| predicted protein [Populus trichocarpa] gi|222837610|gb|EEE75975.1| predicted protein [Populus trichocarpa]

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/228 (87%), Positives = 213/228 (93%), Gaps = 2/228 (0%)

Query: 3   MDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLS 62
           M+  SAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTL VTA GAVLHVLS
Sbjct: 1   MESFSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLLVTASGAVLHVLS 60

Query: 63  TSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAV 122
           TSLLGITAITMANTIAGE+TVHKLASLLL+VLGG Y++LF+SGKGGHSHSHNQPMEKMAV
Sbjct: 61  TSLLGITAITMANTIAGEETVHKLASLLLIVLGGCYVILFLSGKGGHSHSHNQPMEKMAV 120

Query: 123 AGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKF 182
            GL+LVPALSPCATTLPVFLAVG+SSSMMVLAIIVLL STITVMTSLVALSFYGASQLKF
Sbjct: 121 VGLILVPALSPCATTLPVFLAVGSSSSMMVLAIIVLLFSTITVMTSLVALSFYGASQLKF 180

Query: 183 HWVERYDKLLVGSVLCLVGILTLIFHDHHHHHDSGAVSGVDHSHRKLI 230
           HWVERYDKLLVGSVLC+VGILTL+FHD H+H   G  SG +H +RK+I
Sbjct: 181 HWVERYDKLLVGSVLCMVGILTLMFHD-HNHEGHGGFSG-EHLNRKII 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523095|gb|AFK49609.1| unknown [Medicago truncatula]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/224 (87%), Positives = 211/224 (94%), Gaps = 1/224 (0%)

Query: 3   MDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLS 62
           M+  +AEDLSTIGGIATVS+LHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGA+LHV+S
Sbjct: 1   MNSFTAEDLSTIGGIATVSILHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAILHVIS 60

Query: 63  TSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAV 122
           TSLLGITAITMANTIAGE+TVHKLASLLLV LGG YI+LF+ GKGGHSHSHNQPMEKMAV
Sbjct: 61  TSLLGITAITMANTIAGEETVHKLASLLLVFLGGMYIILFLMGKGGHSHSHNQPMEKMAV 120

Query: 123 AGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKF 182
           AGL+LVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTI+VMTSLVALSFYGASQLKF
Sbjct: 121 AGLILVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTISVMTSLVALSFYGASQLKF 180

Query: 183 HWVERYDKLLVGSVLCLVGILTLIFHDHHHHHDSGAVSGVDHSH 226
           HWV+RYDKLLVGSVLCLVG+LTL+FHDH H+H   A  G +H H
Sbjct: 181 HWVKRYDKLLVGSVLCLVGVLTLMFHDHDHNHGEVASVG-EHLH 223

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249116|ref|NP_001240251.1| uncharacterized protein LOC100808307 [Glycine max] gi|255644396|gb|ACU22703.1| unknown [Glycine max]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/230 (86%), Positives = 213/230 (92%), Gaps = 2/230 (0%)

Query: 3   MDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLS 62
           M GL+AEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLS TL VTA GA+LHV+S
Sbjct: 1   MGGLTAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSTTLIVTALGAILHVIS 60

Query: 63  TSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAV 122
           TSLLGITAITMANTIAGE+TVHK+ASLLLV LGGSYI+LF+ GKGGHSHSHNQPMEKMAV
Sbjct: 61  TSLLGITAITMANTIAGEETVHKVASLLLVFLGGSYIILFLMGKGGHSHSHNQPMEKMAV 120

Query: 123 AGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKF 182
           AGL+LVPALSPCATTLPVFLAVGNSSSMMVLAIIVLL STITVMTSLVALSFYGASQLKF
Sbjct: 121 AGLILVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLFSTITVMTSLVALSFYGASQLKF 180

Query: 183 HWVERYDKLLVGSVLCLVGILTLIFHDHHHHHDSGAVSGVDHSHRKLIVL 232
           HWVERYDKLLVGSVLCLVG+LTL+FHD  H H+  ++    HSHRK+I L
Sbjct: 181 HWVERYDKLLVGSVLCLVGVLTLLFHD--HDHEVVSIGHHSHSHRKIISL 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808165|ref|XP_002871966.1| hypothetical protein ARALYDRAFT_489018 [Arabidopsis lyrata subsp. lyrata] gi|297317803|gb|EFH48225.1| hypothetical protein ARALYDRAFT_489018 [Arabidopsis lyrata subsp. lyrata]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/231 (86%), Positives = 212/231 (91%), Gaps = 7/231 (3%)

Query: 3   MDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLS 62
           MD  +AEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHV+S
Sbjct: 1   MDTFTAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVIS 60

Query: 63  TSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAV 122
           TSLLGITAITMANTIAGE+TVHKLASLLLV LGGSY+LLF++GKG H+HSHNQPMEKMAV
Sbjct: 61  TSLLGITAITMANTIAGEETVHKLASLLLVFLGGSYVLLFLAGKGSHTHSHNQPMEKMAV 120

Query: 123 AGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKF 182
           AGLVLVPALSPCATTLPVFLAVGNS SMMVLAIIVLL STI VMTSLVALSFYGASQLKF
Sbjct: 121 AGLVLVPALSPCATTLPVFLAVGNSKSMMVLAIIVLLFSTILVMTSLVALSFYGASQLKF 180

Query: 183 HWVERYDKLLVGSVLCLVGILTLIFHDHHH-HHDSGAVSGVDHSHRKLIVL 232
           HWVERYDKLLVGSVLCLVGILTL+FHDH H  H++  +      HRK+I L
Sbjct: 181 HWVERYDKLLVGSVLCLVGILTLLFHDHDHGGHEAHQL------HRKIITL 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242149|ref|NP_197606.1| uncharacterized protein [Arabidopsis thaliana] gi|15809944|gb|AAL06899.1| AT5g21070/T10F18_100 [Arabidopsis thaliana] gi|18958048|gb|AAL79597.1| AT5g21070/T10F18_100 [Arabidopsis thaliana] gi|332005545|gb|AED92928.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/231 (86%), Positives = 212/231 (91%), Gaps = 7/231 (3%)

Query: 3   MDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLS 62
           MD  +AEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTL VTAFGAVLHV+S
Sbjct: 1   MDTFTAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLLVTAFGAVLHVIS 60

Query: 63  TSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAV 122
           TSLLGITAITMANTIAGE+TVHKLASLLLV LGGSY+LLF++GKGGH+HSHNQPMEKMAV
Sbjct: 61  TSLLGITAITMANTIAGEETVHKLASLLLVFLGGSYVLLFLAGKGGHTHSHNQPMEKMAV 120

Query: 123 AGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKF 182
           AGLVLVPALSPCATTLPVFLAVGNS SMMVLAIIVLL STI VMTSLVALSFYGASQLKF
Sbjct: 121 AGLVLVPALSPCATTLPVFLAVGNSKSMMVLAIIVLLFSTILVMTSLVALSFYGASQLKF 180

Query: 183 HWVERYDKLLVGSVLCLVGILTLIFHDHHH-HHDSGAVSGVDHSHRKLIVL 232
           HWVERYDKLLVGSVLCLVGILTL+FHDH H  H++  +      HRK+I L
Sbjct: 181 HWVERYDKLLVGSVLCLVGILTLLFHDHDHGGHEAHQL------HRKIITL 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593186|gb|AAM65135.1| unknown [Arabidopsis thaliana]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/231 (86%), Positives = 211/231 (91%), Gaps = 7/231 (3%)

Query: 3   MDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLS 62
           MD  +AEDLSTI GIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTL VTAFGAVLHV+S
Sbjct: 1   MDTFTAEDLSTISGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLLVTAFGAVLHVIS 60

Query: 63  TSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAV 122
           TSLLGITAITMANTIAGE+TVHKLASLLLV LGGSY+LLF++GKGGH+HSHNQPMEKMAV
Sbjct: 61  TSLLGITAITMANTIAGEETVHKLASLLLVFLGGSYVLLFLAGKGGHTHSHNQPMEKMAV 120

Query: 123 AGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKF 182
           AGLVLVPALSPCATTLPVFLAVGNS SMMVLAIIVLL STI VMTSLVALSFYGASQLKF
Sbjct: 121 AGLVLVPALSPCATTLPVFLAVGNSKSMMVLAIIVLLFSTILVMTSLVALSFYGASQLKF 180

Query: 183 HWVERYDKLLVGSVLCLVGILTLIFHDHHH-HHDSGAVSGVDHSHRKLIVL 232
           HWVERYDKLLVGSVLCLVGILTL+FHDH H  H++  +      HRK+I L
Sbjct: 181 HWVERYDKLLVGSVLCLVGILTLLFHDHDHGGHEAHQL------HRKIITL 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2178948	225	AT5G21070 "AT5G21070" [Arabido	0.883	0.911	0.858	3.2e-88

TAIR|locus:2178948 AT5G21070 "AT5G21070" [Arabidopsis thaliana (taxid:3702)]

 Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
 Identities = 176/205 (85%), Positives = 183/205 (89%)

Query:     3 MDGLSAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLS 62
             MD  +AEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTL VTAFGAVLHV+S
Sbjct:     1 MDTFTAEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLLVTAFGAVLHVIS 60

Query:    63 TSLLGITAITMANTIAGEDTVHKXXXXXXXXXXXXXXXXFISGKGGHSHSHNQPMEKMAV 122
             TSLLGITAITMANTIAGE+TVHK                F++GKGGH+HSHNQPMEKMAV
Sbjct:    61 TSLLGITAITMANTIAGEETVHKLASLLLVFLGGSYVLLFLAGKGGHTHSHNQPMEKMAV 120

Query:   123 AGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKF 182
             AGLVLVPALSPCATTLPVFLAVGNS SMMVLAIIVLL STI VMTSLVALSFYGASQLKF
Sbjct:   121 AGLVLVPALSPCATTLPVFLAVGNSKSMMVLAIIVLLFSTILVMTSLVALSFYGASQLKF 180

Query:   183 HWVERYDKLLVGSVLCLVGILTLIF 207
             HWVERYDKLLVGSVLCLVGILTL+F
Sbjct:   181 HWVERYDKLLVGSVLCLVGILTLLF 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.136   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      232       208   0.00077  112 3  11 22  0.42    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  150 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.58u 0.12s 15.70t   Elapsed:  00:00:00
  Total cpu time:  15.58u 0.12s 15.70t   Elapsed:  00:00:00
  Start:  Sat May 11 08:02:22 2013   End:  Sat May 11 08:02:22 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	99.94
COG2215	303	ABC-type uncharacterized transport system, permeas	99.66
PF03824	282	NicO: High-affinity nickel-transport protein; Inte	99.5
TIGR00802	280	nico high-affinity nickel-transporter, HoxN/HupN/N	99.2
PF13386	199	DsbD_2: Cytochrome C biogenesis protein transmembr	98.93
PF02683	211	DsbD: Cytochrome C biogenesis protein transmembran	98.56
COG0785	220	CcdA Cytochrome c biogenesis protein [Posttranslat	98.06
COG2836	232	Uncharacterized conserved protein [Function unknow	98.05
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	97.92
PRK11469	188	hypothetical protein; Provisional	97.76
COG3376	342	HoxN High-affinity nickel permease [Inorganic ion	97.66
COG1971	190	Predicted membrane protein [Function unknown]	97.6
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	96.8
PF13795	151	HupE_UreJ_2: HupE / UreJ protein	96.71
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	96.63
PF11139	214	DUF2910: Protein of unknown function (DUF2910); In	96.34
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	96.19
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	96.14
PRK09304	207	arginine exporter protein; Provisional	95.77
PF03824	282	NicO: High-affinity nickel-transport protein; Inte	95.53
COG4300	205	CadD Predicted permease, cadmium resistance protei	95.21
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	95.11
PF02683	211	DsbD: Cytochrome C biogenesis protein transmembran	94.94
PRK10958	212	leucine export protein LeuE; Provisional	94.92
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	94.77
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	92.48
PRK11111	214	hypothetical protein; Provisional	92.45
COG4280	236	Predicted membrane protein [Function unknown]	91.67
PF01914	203	MarC: MarC family integral membrane protein; Inter	90.2
TIGR00948	177	2a75 L-lysine exporter.	89.17
COG0785	220	CcdA Cytochrome c biogenesis protein [Posttranslat	88.53
PF09323	182	DUF1980: Domain of unknown function (DUF1980); Int	87.68
PF09930	224	DUF2162: Predicted transporter (DUF2162); InterPro	87.29
COG2119	190	Predicted membrane protein [Function unknown]	87.12
PF04955	180	HupE_UreJ: HupE / UreJ protein; InterPro: IPR00703	86.19
PRK10995	221	inner membrane protein; Provisional	85.79
TIGR00145	283	FTR1 family protein. A characterized member from y	85.64
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	85.26
PRK10229	206	threonine efflux system; Provisional	82.97

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=99.94  E-value=3.1e-25  Score=200.42  Aligned_cols=198  Identities=12%  Similarity=0.185  Sum_probs=148.9

Q ss_pred             hhHHHHHHHHHHhhhhcccCCCchh--hhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc---chhH
Q 026849            9 EDLSTIGGIATVSLLHSFIPTHWLP--FSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAG---EDTV   83 (232)
Q Consensus         9 ~~~sil~~gf~Lg~lHAl~PdH~~p--v~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~---~~~~   83 (232)
                      ..++++..+|..|+.||++|||.++  .+.+..++ -+.+|.+..++.|+++||.+.++++++.+.+.++++.   +.++
T Consensus        12 ~~~~l~~~~f~yG~~HAlgPGHGKavi~sYlv~~~-~~~~~a~~lgl~~~l~hta~~lv~~~~~~~l~~~~~~~~~~~~l   90 (279)
T PRK10019         12 NAWFFIPSAILLGALHGLEPGHSKTMMAAFIIAIK-GTIKQAVMLGLAATISHTAVVWLIAFGGMYLSRRFTAQSAEPWL   90 (279)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCcchHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            5678999999999999999999999  44566444 4899999999999999999999999998888888883   7889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-------CCCCCCCC--C-----------------------cc--h-------hH--
Q 026849           84 HKLASLLLVVLGGSYILLFISGK-------GGHSHSHN--Q-----------------------PM--E-------KM--  120 (232)
Q Consensus        84 e~~vG~~LI~lG~~yl~~~~~~~-------~~h~H~H~--~-----------------------~~--~-------k~--  120 (232)
                      |.+++++++++|+|.++|..|++       ..|+|+|+  |                       |+  +       |.  
T Consensus        91 e~~S~~lii~lGl~ll~r~~r~~~~~~~~~h~~~h~h~h~h~h~~~c~~~~~~~~~~~~gh~h~~~~~~~~~a~~~r~~~  170 (279)
T PRK10019         91 QLISAVIIISTAFWMFWRTWRGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQDAHERAHANDIKRRF  170 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCcCccccccccccccccccCCCCHHHhhccchhhhhh
Confidence            99999999999998886555442       11122211  0                       11  0       01  


Q ss_pred             --------HHHHHHHhhccccchhHHHHHHHhcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchhHHHHH
Q 026849          121 --------AVAGLVLVPALSPCATTLPVFLAVGNSS--SMMVLAIIVLLLSTITVMTSLVALSFYGAS--QLKFHWVERY  188 (232)
Q Consensus       121 --------~~~~Lv~~l~lsPc~a~lpl~L~a~~~~--~~~~lyilvF~~gti~gM~~~t~l~~~g~~--~~~~~~~ery  188 (232)
                              .++.+++..++.||++.+.+++.+.+.+  +.+++|++.|++||+++|+++..+...+.+  ..+..+.+|+
T Consensus       171 ~~~~~~~~~~l~igl~~Gl~PCpgAl~VLL~a~~lg~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~  250 (279)
T PRK10019        171 DGREVTNGQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTL  250 (279)
T ss_pred             cccccccchhhHHHHHhccCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence                    1235666689999976665444333433  889999999999999999999998854443  2223345566


Q ss_pred             HH---HHHHHHHHHHhhhhhhc
Q 026849          189 DK---LLVGSVLCLVGILTLIF  207 (232)
Q Consensus       189 ~~---~i~G~v~i~~Gi~~~~~  207 (232)
                      .+   .++|++++++|+.....
T Consensus       251 ~~~~p~~s~~l~i~~G~~~~~~  272 (279)
T PRK10019        251 ARRAPYFSSLLIGLVGVYMGVH  272 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            56   99999999999876543

>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=99.66  E-value=1.7e-14  Score=131.16  Aligned_cols=195  Identities=21%  Similarity=0.247  Sum_probs=137.4

Q ss_pred             hHHHHHHHHHHhhhhcccCCCchhhhh--hccccCccchhHHHHHHHHhhhHHHH--HHHHHHHHHHHHhhcc---cchh
Q 026849           10 DLSTIGGIATVSLLHSFIPTHWLPFSI--VGRAQKWTLSRTLFVTAFGAVLHVLS--TSLLGITAITMANTIA---GEDT   82 (232)
Q Consensus        10 ~~sil~~gf~Lg~lHAl~PdH~~pv~~--i~~~~kws~~rtl~~~~~~GlGHtls--~~llGl~~i~lg~~i~---~~~~   82 (232)
                      .++++..+|+.|+.||++|+|.+.+.+  +. ++|-.++|.+..++...+-|.++  .++.+...++.+..+.   -+.+
T Consensus        54 ~w~li~~SflyGvlHAlgPGHgKaviasyli-a~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~  132 (303)
T COG2215          54 GWTLIPLSFLYGVLHALGPGHGKAVIATYLI-AHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPW  132 (303)
T ss_pred             HHHHHHHHHHHHHHhccCCCcchHHHHHHHH-hcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHhhhhHH
Confidence            478999999999999999999999662  33 45558899999999999999444  4444444444444444   2678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccC----C-----------CCCCC--------CC-cchh--------HHHHHHHHhhc
Q 026849           83 VHKLASLLLVVLGGSYILLFISGKG----G-----------HSHSH--------NQ-PMEK--------MAVAGLVLVPA  130 (232)
Q Consensus        83 ~e~~vG~~LI~lG~~yl~~~~~~~~----~-----------h~H~H--------~~-~~~k--------~~~~~Lv~~l~  130 (232)
                      +|..+..+++.+|+|.++|.+|+.+    .           |+|.|        .| |+.|        ...+..++..+
T Consensus       133 lE~~S~~Ll~~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~~~~~~~~~~~~~~~l~~G  212 (303)
T COG2215         133 LELISFLLLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKRLGQAVDWKQQWLFGLTGG  212 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccCCCcccCCccccccccccccCCChHHhcccccHHHHHHHHHHhc
Confidence            8999999999999998866666411    0           11221        12 2211        13346677789


Q ss_pred             cccchhHHHHHHHhcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hccchhHHHHHHHHHHHHHHHHH
Q 026849          131 LSPCATTLPVFLAVGNSS--SMMVLAIIVLLLSTITVMTSLVALSFYGA--------SQLKFHWVERYDKLLVGSVLCLV  200 (232)
Q Consensus       131 lsPc~a~lpl~L~a~~~~--~~~~lyilvF~~gti~gM~~~t~l~~~g~--------~~~~~~~~ery~~~i~G~v~i~~  200 (232)
                      +-||++.+-+++.+.+++  ..++++++.+++||.++...+..+.....        .+..-+++.+..+++.|++.+.+
T Consensus       213 LrPCpgAi~VLlfal~~gl~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~~~~~~~~l~~gli~l~~  292 (303)
T COG2215         213 LRPCPGAIFVLLFALSLGLYTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAKRISYIVSLLGGLIGLYF  292 (303)
T ss_pred             CccCcHHHHHHHHHHHhchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999998887777666666  77999999999999999777777655321        11123455566678888888888


Q ss_pred             hhhhh
Q 026849          201 GILTL  205 (232)
Q Consensus       201 Gi~~~  205 (232)
                      |+...
T Consensus       293 g~~~l  297 (303)
T COG2215         293 GLHLL  297 (303)
T ss_pred             HHHHH
Confidence            87654

>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease

Probab=99.50  E-value=2.1e-12  Score=115.93  Aligned_cols=162  Identities=21%  Similarity=0.191  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHhhhhcccCCCchhhhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-------chh
Q 026849           10 DLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAG-------EDT   82 (232)
Q Consensus        10 ~~sil~~gf~Lg~lHAl~PdH~~pv~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~-------~~~   82 (232)
                      .++++..+|.+|++||++|||.+++..-   ...+.+++.+.++.||+||+++..+.+++++.+...++.       .+.
T Consensus         1 ~l~ll~laf~~G~~HAl~PgH~kai~~~---~~~~~~~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~~~~~~~~~~~   77 (282)
T PF03824_consen    1 LLSLLLLAFLYGLLHALGPGHGKAIIAS---YLLSSRRALRVGLFFGLGHSLTHGLSAILLVLLALWLSELSSFADVGSA   77 (282)
T ss_pred             CHHHHHHHHHHHHHHccCCChHHHHHHH---HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHhhH
Confidence            3688999999999999999999998431   112334456778889999999888888888666655443       222


Q ss_pred             H--HH-HHHHHHHHHHHHHHHHHHhccC-------C------CC------CCC---------CCc------c--------
Q 026849           83 V--HK-LASLLLVVLGGSYILLFISGKG-------G------HS------HSH---------NQP------M--------  117 (232)
Q Consensus        83 ~--e~-~vG~~LI~lG~~yl~~~~~~~~-------~------h~------H~H---------~~~------~--------  117 (232)
                      .  +. .+.++++.+|.+.++++.++.+       .      |.      |+|         +++      .        
T Consensus        78 ~~~~~~~~~llv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~g~~  157 (282)
T PF03824_consen   78 VGLLVSGSFLLVIGIGNWLLLRRLRHLHRHLRRGHQHAHSHDHAHHHHGDHGHFHHPHHHHHSHHHHHDHVGHLFGLGFD  157 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhcccccccCCCcccccccccccccccc
Confidence            2  33 4556666667766665544321       0      00      000         000      0        


Q ss_pred             --------------------hhHHHHHHHHhhccccchhHHHHHHHhcchh--hHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 026849          118 --------------------EKMAVAGLVLVPALSPCATTLPVFLAVGNSS--SMMVLAIIVLLL-STITVMTSLVALSF  174 (232)
Q Consensus       118 --------------------~k~~~~~Lv~~l~lsPc~a~lpl~L~a~~~~--~~~~lyilvF~~-gti~gM~~~t~l~~  174 (232)
                                          ++....++....++.||+..+-+++.+...+  ..+..+...+++ |+.+.+.++..+..
T Consensus       158 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Gm~p~~~a~~vl~~~~~~~~~~~g~~~~~~~~l~g~~i~~~~~~~~~~  237 (282)
T PF03824_consen  158 TASCGHLHGLSAAALPGAPISWILLLGLGFAAGMVPCPGALGVLLFALYLGAFWAGRAAVLAMSLGGMAITVALFAGLAV  237 (282)
T ss_pred             ccchhcccccccccccCCCchHHHHHHHHHHhhccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                0123335555579999999987777555544  445666677888 77777777766554

Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family

Probab=99.20  E-value=6e-11  Score=107.15  Aligned_cols=85  Identities=15%  Similarity=0.090  Sum_probs=68.0

Q ss_pred             HHHHHHhhhhcccCCCchhhhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc--------chhH-HH
Q 026849           15 GGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAG--------EDTV-HK   85 (232)
Q Consensus        15 ~~gf~Lg~lHAl~PdH~~pv~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~--------~~~~-e~   85 (232)
                      ..++++|++||+||||..++..+.|+.--+.+|....|++|++||+.+.++..+++..-...++.        ...+ ..
T Consensus         2 ~la~~lGlrHA~DaDHiaAId~~trkl~~~~~~~~~~G~~fslGHs~vV~l~~l~ia~~~~~~~~~~~~~~~igg~iGt~   81 (280)
T TIGR00802         2 LLAYVLGLRHAFDADHIAAIDNTTRKLMQQGRRPLGVGFFFSLGHSTVVVLATVLIAVASALLTERLDGLHEIGGLIGTL   81 (280)
T ss_pred             hHHHHhhhhccCCcchhhhhHHHHHHHhhcCCCceeeeeeecCccHHHHHHHHHHHHHHHHHHHhhchhHHhccceeeHH
Confidence            46899999999999999999999987634778889999999999999999888776544333321        1223 37


Q ss_pred             HHHHHHHHHHHHHH
Q 026849           86 LASLLLVVLGGSYI   99 (232)
Q Consensus        86 ~vG~~LI~lG~~yl   99 (232)
                      +++..|+++|+.++
T Consensus        82 VS~~FL~~ig~~Nl   95 (280)
T TIGR00802        82 VSALFLLIIALLNL   95 (280)
T ss_pred             HHHHHHHHHHHHHH
Confidence            89999999999888

This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.

>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region

Probab=98.93  E-value=6e-08  Score=82.99  Aligned_cols=147  Identities=21%  Similarity=0.209  Sum_probs=101.2

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHhhccc---chhHHHHHHHHHHHHHHHHHHHHHhccCCCC---CCC-----CCcc-h
Q 026849           51 VTAFGAVLHVLSTSLLGITAITMANTIAG---EDTVHKLASLLLVVLGGSYILLFISGKGGHS---HSH-----NQPM-E  118 (232)
Q Consensus        51 ~~~~~GlGHtls~~llGl~~i~lg~~i~~---~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~---H~H-----~~~~-~  118 (232)
                      ......+|++++-.++|.++-.+|..++.   .+.++..+++.+..+++++.++..++++..+   .++     .++. +
T Consensus        34 ~~l~y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~~~~~~~~l~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~  113 (199)
T PF13386_consen   34 RHLLYNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIGILLGLLGLFLGLRLLGGPRLPKLGRLGHGLARRLQPLLR  113 (199)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhccHHHHHHhHHHHH
Confidence            46888999999999999999999988763   2456777777777777765544443221111   000     0111 1


Q ss_pred             --hHHHHHHHHh--hccccchhHHHHHHHhcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 026849          119 --KMAVAGLVLV--PALSPCATTLPVFLAVGNSS--SMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLL  192 (232)
Q Consensus       119 --k~~~~~Lv~~--l~lsPc~a~lpl~L~a~~~~--~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i  192 (232)
                        +....++.+|  .++.||+.+.+.+..+..++  .++.++...|++||+..|+.+..+..+.-+     +.+|....+
T Consensus       114 ~~~~~~~~~~lG~l~gllPCg~~y~~l~~A~~s~s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~-----~~~~~~~r~  188 (199)
T PF13386_consen  114 KLKGPWGAFLLGFLNGLLPCGPVYFALALAAASGSPLYGALLMLAFGLGTLPALLLAGLLAGKLSR-----RLRRRLLRL  188 (199)
T ss_pred             hcCCccHHHHHHHHHHHhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence              2344466666  48889998877666444433  889999999999999999999888776533     333445558


Q ss_pred             HHHHHHHHhh
Q 026849          193 VGSVLCLVGI  202 (232)
Q Consensus       193 ~G~v~i~~Gi  202 (232)
                      .|.+.+++|+
T Consensus       189 ~g~~~i~~G~  198 (199)
T PF13386_consen  189 AGVLLIILGI  198 (199)
T ss_pred             HHHHHHHHHH
Confidence            8999999986

>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation

Probab=98.56  E-value=1e-05  Score=69.72  Aligned_cols=155  Identities=17%  Similarity=0.142  Sum_probs=104.2

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHHHHh-----ccCCC---CCCCCCcchh
Q 026849           49 LFVTAFGAVLHVLSTSLLGITAITMANTIA-GEDTVHKLASLLLVVLGGSYILLFIS-----GKGGH---SHSHNQPMEK  119 (232)
Q Consensus        49 l~~~~~~GlGHtls~~llGl~~i~lg~~i~-~~~~~e~~vG~~LI~lG~~yl~~~~~-----~~~~h---~H~H~~~~~k  119 (232)
                      +..++.-..|=.++-.++|.....+++.++ ...++..+.|++++++|+..+ ..+.     +.+..   ..+.+.+.-.
T Consensus        41 ~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~~~~~~~~~i~g~~~i~~Gl~~l-~~~~~~~l~~~~~~~~~~~~~~~~~~g  119 (211)
T PF02683_consen   41 LLLGLAFVLGFALVFALLGLGAGALGSFFGQISPWLYIIAGVLLILFGLSLL-GLFEIPFLSRPRLGLRSKRKSGGGLLG  119 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcchhhhhhhhhhhhhcCCCCCccc
Confidence            566666667777888888888888887775 457788999999999999554 2221     11000   0011111223


Q ss_pred             HHHHHHHHhhccccchhH--HHHHH-Hhcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHH
Q 026849          120 MAVAGLVLVPALSPCATT--LPVFL-AVGNSS-SMMVLAIIVLLLSTITVMTSLVALSFYGAS-QLKFHWVERYDKLLVG  194 (232)
Q Consensus       120 ~~~~~Lv~~l~lsPc~a~--lpl~L-~a~~~~-~~~~lyilvF~~gti~gM~~~t~l~~~g~~-~~~~~~~ery~~~i~G  194 (232)
                      +...|+..++.-+||.+-  ..++. ++.+++ ..+..+.++|++|-.+-+..+.....+..+ ..+.++..|+.+.+.|
T Consensus       120 af~lG~~~~l~~~PC~~p~l~~il~~a~~~~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i~~~~G  199 (211)
T PF02683_consen  120 AFLLGLLFGLVWSPCTGPILAAILALAASSGSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWIKRISG  199 (211)
T ss_pred             HHHHHHHHHHHhhhcchHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566688888899999632  23222 333332 677888899999999888888776665432 2235577888889999


Q ss_pred             HHHHHHhhhh
Q 026849          195 SVLCLVGILT  204 (232)
Q Consensus       195 ~v~i~~Gi~~  204 (232)
                      .+++++|+..
T Consensus       200 ~lli~~g~~~  209 (211)
T PF02683_consen  200 ILLIALGLYL  209 (211)
T ss_pred             HHHHHHHHHH
Confidence            9999999864

DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane

>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=0.0012  Score=58.26  Aligned_cols=190  Identities=19%  Similarity=0.162  Sum_probs=125.0

Q ss_pred             HHHHHHHHhhhhcccCCCc--hhhh--hhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-chhHHHHH
Q 026849           13 TIGGIATVSLLHSFIPTHW--LPFS--IVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAG-EDTVHKLA   87 (232)
Q Consensus        13 il~~gf~Lg~lHAl~PdH~--~pv~--~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~-~~~~e~~v   87 (232)
                      .+..+|..|.+=.+.|==.  .|+.  .++..+.-+.++....++.--.|=+.+-..+|.....++..++. -++.+.++
T Consensus        12 ~~~~aflaGlls~lSPCilpllP~~l~~~~~~~~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~~i~   91 (220)
T COG0785          12 SILLAFLAGLLSFLSPCVLPLLPAYLSYLAGGSLGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLRYIA   91 (220)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667888888888887522  2322  22222221234456566655667777777778877788877763 35789999


Q ss_pred             HHHHHHHHHHHHHHHHh----c--cCCCCCCCCCcchhHHHHHHHHhhccccchhHH---HHHHHhcchh-hHHHHHHHH
Q 026849           88 SLLLVVLGGSYILLFIS----G--KGGHSHSHNQPMEKMAVAGLVLVPALSPCATTL---PVFLAVGNSS-SMMVLAIIV  157 (232)
Q Consensus        88 G~~LI~lG~~yl~~~~~----~--~~~h~H~H~~~~~k~~~~~Lv~~l~lsPc~a~l---pl~L~a~~~~-~~~~lyilv  157 (232)
                      |++++.+|. .++-..+    .  +|.....-..+..++...|+..+++-.||..-+   ++.+++.++. ..+.++.++
T Consensus        92 gi~li~~Gl-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~~~~~~~g~~ll~~  170 (220)
T COG0785          92 GILLILLGL-LFLGVLRLPLLLRFARFQLKGKSVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGALLLAA  170 (220)
T ss_pred             HHHHHHHHH-HHHHHHhhhhhhhcchhhhccCCCcchhHHHHHHHHHHHhccchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            999999994 5433332    1  111110001223455777888889999998433   4455555554 778888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHHHHhhh
Q 026849          158 LLLSTITVMTSLVALSFYGASQ--LKFHWVERYDKLLVGSVLCLVGIL  203 (232)
Q Consensus       158 F~~gti~gM~~~t~l~~~g~~~--~~~~~~ery~~~i~G~v~i~~Gi~  203 (232)
                      |++|-.+-..++..+..+..++  .+.+|..|..+.+.|..++.+|+.
T Consensus       171 Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~~G~lli~~Gv~  218 (220)
T COG0785         171 YALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLL  218 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888887773  224455555668999999999975

>COG2836 Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=0.00032  Score=62.30  Aligned_cols=168  Identities=18%  Similarity=0.100  Sum_probs=106.6

Q ss_pred             cCChhhHHHHHHHHHHhhhhccc-CCCch-hhhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccc--
Q 026849            5 GLSAEDLSTIGGIATVSLLHSFI-PTHWL-PFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGE--   80 (232)
Q Consensus         5 ~m~~~~~sil~~gf~Lg~lHAl~-PdH~~-pv~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~--   80 (232)
                      +|+.+.++ +.....+|..|-+- =+=.. +++..-.+++ +.+ ..+..+.-=+|-+.|=.++|.+.-.+|.+....  
T Consensus         1 ~~~~~~l~-~~~~g~lg~gHC~gMCGGi~~afs~~~~~~~-~~~-~~~~~~lyNlGRi~SYallG~i~G~lG~~l~~~~~   77 (232)
T COG2836           1 MMSISFLG-IFLLGLLGGGHCLGMCGGIVLAFSLLIPSKV-SSS-RLKLHLLYNLGRILSYALLGAILGALGVSLGQSAG   77 (232)
T ss_pred             CcchhHHH-HHHHHHhcCccHHHhcchHHHHHHHhccccc-hHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888 66666777767655 22111 3332222222 222 377888889999999999999988888666533  


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHhccC----C----CCCCCCCc----chhHHHHHHHHhh--ccccchhHHHHHHHh
Q 026849           81 --DTVHKLASLLLVVLGGSYILLFISGKG----G----HSHSHNQP----MEKMAVAGLVLVP--ALSPCATTLPVFLAV  144 (232)
Q Consensus        81 --~~~e~~vG~~LI~lG~~yl~~~~~~~~----~----h~H~H~~~----~~k~~~~~Lv~~l--~lsPc~a~lpl~L~a  144 (232)
                        ..+..++|++||.+|+.++.+...++.    +    .-+++-.|    +.|..-.+.++|+  ++-||.-.-+-...+
T Consensus        78 ~~~~l~i~ag~~li~lGL~l~~~~~~~~~~~~~p~i~~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~lPCGlVYs~l~~A  157 (232)
T COG2836          78 LRGVLFIIAGALLIALGLYLLARGGMWSGALKLPFIGGFLWRLLKPIRLLPLKPLPGALFLGMLWGLLPCGLVYSALAYA  157 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchhhHHhhchhcchHHHHhhhhhhccccCcchHHHHHHHHhcccchHHHHHHHHHH
Confidence              334689999999999966322111100    0    01111111    1123344666664  899999776555534


Q ss_pred             cchh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026849          145 GNSS--SMMVLAIIVLLLSTITVMTSLVALSFY  175 (232)
Q Consensus       145 ~~~~--~~~~lyilvF~~gti~gM~~~t~l~~~  175 (232)
                      ..++  +++.++.+.|++||.=.|+.+.....+
T Consensus       158 ~~tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~  190 (232)
T COG2836         158 LSTGSAFEGALVMLAFGLGTLPNLLAMGIFSSK  190 (232)
T ss_pred             HHcCCHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence            4333  788889999999999999999887775

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=97.92  E-value=0.0016  Score=64.65  Aligned_cols=194  Identities=18%  Similarity=0.119  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHhhhhcccCCCc--hhhh--hhcc-ccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc---chh
Q 026849           11 LSTIGGIATVSLLHSFIPTHW--LPFS--IVGR-AQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAG---EDT   82 (232)
Q Consensus        11 ~sil~~gf~Lg~lHAl~PdH~--~pv~--~i~~-~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~---~~~   82 (232)
                      +-.+...|..|+.=.+.|=-.  .|+.  .+.+ +++-+.+|.+..++.-.+|=.++-.++|.++..+|..+..   ..+
T Consensus       166 ~~~l~~afl~Glll~l~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~  245 (571)
T PRK00293        166 PWSLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQHPY  245 (571)
T ss_pred             hHHHHHHHHHHHHHhccchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            335667777777777777544  3432  2322 2222556778888888999999999999988887765531   234


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHh-----ccC---CCCCCCCCcchhHHHHHHHHhhccccchh-HH-HHHHH-hcc-hhh
Q 026849           83 VHKLASLLLVVLGGSYIL-LFIS-----GKG---GHSHSHNQPMEKMAVAGLVLVPALSPCAT-TL-PVFLA-VGN-SSS  149 (232)
Q Consensus        83 ~e~~vG~~LI~lG~~yl~-~~~~-----~~~---~h~H~H~~~~~k~~~~~Lv~~l~lsPc~a-~l-pl~L~-a~~-~~~  149 (232)
                      +....+++++++|+..+- .+++     +++   ..........-.+.+.|+..++..+||.+ ++ ..+.. +.+ +..
T Consensus       246 ~~~~~~~l~v~lgL~~~G~~~l~lp~~~~~~~~~~~~~~~~~~~~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~tg~~~  325 (571)
T PRK00293        246 VLIGLSILFVLLALSMFGLFTLQLPSSLQTRLTLLSNRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALLYIAQSGDLL  325 (571)
T ss_pred             HHHHHHHHHHHHHHHHhcceeccCcHHHHHHhhhhhhcccCCchHhHHHHHHHHHHHhCCCchHHHHHHHHHHHccCcHH
Confidence            567788999999995531 1110     000   00000001112345567777778889973 33 33322 222 226


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhhh
Q 026849          150 MMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLI  206 (232)
Q Consensus       150 ~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~  206 (232)
                      .+.+...+|++|+.+-++++.....+-..  |..++-+..+.+.|.+++++|+....
T Consensus       326 ~g~~~l~~~gLG~~~Plll~~~~~~~~lp--k~g~wm~~~k~~~G~~ll~~~~~ll~  380 (571)
T PRK00293        326 LGGLTLYLLALGMGLPLILITTFGNKLLP--KSGPWMNQVKTAFGFVLLALPVFLLE  380 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777789999998888888876543222  23344445666778888888776543

>PRK11469 hypothetical protein; Provisional

Probab=97.76  E-value=0.0055  Score=52.80  Aligned_cols=180  Identities=16%  Similarity=0.062  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHhhhhcccCCCchhhhhhc-cccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 026849           10 DLSTIGGIATVSLLHSFIPTHWLPFSIVG-RAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLAS   88 (232)
Q Consensus        10 ~~sil~~gf~Lg~lHAl~PdH~~pv~~i~-~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG   88 (232)
                      .++++..++.+++-      =-..=.+.+ |.+|-+.++.+...+.-|.-+.+.+++=-...-.+...+  .++-++++.
T Consensus         3 ~~~i~llaialsmD------aF~v~ia~G~~~~~~~~~~~~~~~l~~g~~q~~m~~~g~~~G~~l~~~i--~~~~~~i~~   74 (188)
T PRK11469          3 ITATVLLAFGMSMD------AFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGMLASRFV--LEWNHWIAF   74 (188)
T ss_pred             HHHHHHHHHHHHHH------HHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            45667777776652      111111222 233446677778888888888776665444444444554  345589999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCcchhHHHHHHHHhhccccchhHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Q 026849           89 LLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTS  168 (232)
Q Consensus        89 ~~LI~lG~~yl~~~~~~~~~h~H~H~~~~~k~~~~~Lv~~l~lsPc~a~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~  168 (232)
                      .+|+.+|+|.+...++++++.+  .+.+.+.+..-.+.++.+.|=++  +.+=++..-.+...+...++.++.|.   +.
T Consensus        75 ~lL~~lG~~mi~e~~~~~~~~~--~~~~~~~~~~~~l~LaiAtSiDA--lavGi~~~~~g~~~~~~~~~ig~~s~---~~  147 (188)
T PRK11469         75 VLLIFLGGRMIIEGFRGADDED--EEPRRRHGFWLLVTTAIATSLDA--MAVGVGLAFLQVNIIATALAIGCATL---IM  147 (188)
T ss_pred             HHHHHHHHHHHHHHHhcccccc--cccccCCCHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHH---HH
Confidence            9999999988755554332211  11011111111222222221111  11111111111112122222111111   11


Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhhh
Q 026849          169 LVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLI  206 (232)
Q Consensus       169 ~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~  206 (232)
                      ...-...|. +.. +++.||.+.+.|++++++|+....
T Consensus       148 ~~~G~~lG~-~~g-~~~g~~a~~lgG~iLI~iGi~il~  183 (188)
T PRK11469        148 STLGMMVGR-FIG-SIIGKKAEILGGLVLIGIGVQILW  183 (188)
T ss_pred             HHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111112343 232 478899999999999999998654

>COG3376 HoxN High-affinity nickel permease [Inorganic ion transport and metabolism]

Probab=97.66  E-value=0.00013  Score=67.24  Aligned_cols=93  Identities=19%  Similarity=0.138  Sum_probs=67.5

Q ss_pred             hhhHHHHHHHHHHhhhhcccCCCchhhhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHH----HHHhhccc----
Q 026849            8 AEDLSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAI----TMANTIAG----   79 (232)
Q Consensus         8 ~~~~sil~~gf~Lg~lHAl~PdH~~pv~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i----~lg~~i~~----   79 (232)
                      ++.++.-.++-++|.+||+++||.+++=...|+=-..-.+...+|.+-.+||.-..+++.+++.    .+.+.+|.    
T Consensus        46 ~~~~~~~~laYtfGlRHA~DADHIAAIDN~tRKLmQqgK~p~~VG~fFSlGHStVViL~~l~~~~~~~~~~n~~~~l~~i  125 (342)
T COG3376          46 ASLLGAGLLAYTLGLRHAFDADHIAAIDNVTRKLMQQGKNPLGVGFFFSLGHSTVVILLSLALAAASKAFKNRLPMLEEI  125 (342)
T ss_pred             hhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhCCCCCceeeEEEecCchHHHHHHHHHHHHHHHHHHhccHHHHHh
Confidence            4667778888999999999999999987666642222233466889999999988887777653    44466662    


Q ss_pred             chhHH-HHHHHHHHHHHHHHHH
Q 026849           80 EDTVH-KLASLLLVVLGGSYIL  100 (232)
Q Consensus        80 ~~~~e-~~vG~~LI~lG~~yl~  100 (232)
                      +...+ .++|..|..+|+.+++
T Consensus       126 GglIgTlVSg~FLllig~lNli  147 (342)
T COG3376         126 GGLIGTLVSGFFLLLIGLLNLI  147 (342)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHH
Confidence            34444 6888889888887664

>COG1971 Predicted membrane protein [Function unknown]

Probab=97.60  E-value=0.0067  Score=52.68  Aligned_cols=178  Identities=20%  Similarity=0.262  Sum_probs=94.3

Q ss_pred             hhHHHHHHHHHHhhhhcccCCCchhhh-hhc---cccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHH
Q 026849            9 EDLSTIGGIATVSLLHSFIPTHWLPFS-IVG---RAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVH   84 (232)
Q Consensus         9 ~~~sil~~gf~Lg~lHAl~PdH~~pv~-~i~---~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e   84 (232)
                      +.+|++..++.+++-         +|+ .++   +.+|-..++.+.++..-|+-+.++-++=-....++...+  .++-+
T Consensus         2 ~~~sllllA~alsmD---------AFav~l~~G~~~~k~~~~~~L~ia~~fG~f~~i~pliG~~~g~~~s~~i--~~~~~   70 (190)
T COG1971           2 NIISLLLLAIALSMD---------AFAVSLGKGLAKHKIRFKEALVIALIFGVFQAIMPLIGWFIGKFLSTFI--AEWAH   70 (190)
T ss_pred             cHHHHHHHHHHHhhH---------HHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            356788888887763         333 222   234444578899999999999888765443333343333  66778


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcchhHHH--H-HHHHhhccccchhHHHHHHHhcchhhHHHHHHHHHHHH
Q 026849           85 KLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAV--A-GLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLS  161 (232)
Q Consensus        85 ~~vG~~LI~lG~~yl~~~~~~~~~h~H~H~~~~~k~~~--~-~Lv~~l~lsPc~a~lpl~L~a~~~~~~~~lyilvF~~g  161 (232)
                      |+++++|+.+|.+++...++++. .  ++.++.||...  - ....+.+.  +--.+++=++....+.......+..++-
T Consensus        71 wigf~lL~~lG~~mI~e~f~~~~-~--~~~~~~~~~~~~~~~~~~laiat--Sidal~vG~~~a~lgv~i~~~av~iG~~  145 (190)
T COG1971          71 WIGFVLLIILGLKMIIEGFKNEE-D--EFVDPAEKHDLNFKELILLAIAT--SIDALAVGVGLAFLGVNILLAAVAIGLI  145 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHhchhh-c--chhcccccchhhHHHHHHHHHHH--HHHHHHHhhhHHHhcchHHHHHHHHHHH
Confidence            99999999999988865565432 2  22222222211  0 11111222  1111222111111221222222221111


Q ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhhhc
Q 026849          162 TITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIF  207 (232)
Q Consensus       162 ti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~~  207 (232)
                      |. .|..+..  ..| +++ -+.+++|...+.|+++|++|......
T Consensus       146 T~-il~~~G~--~IG-~~~-g~~~g~~ae~lgGiiLI~~G~~iL~~  186 (190)
T COG1971         146 TL-ILSALGA--IIG-RKL-GKFLGKYAEILGGIILIGIGVKILLE  186 (190)
T ss_pred             HH-HHHHHHH--HHH-HHH-HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            11 1111111  123 233 36899999999999999999876543

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=96.80  E-value=0.11  Score=43.46  Aligned_cols=150  Identities=14%  Similarity=0.135  Sum_probs=75.5

Q ss_pred             HHHHHhhhHHHHHHHHHHHHH-HHH---hhcc-cchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcchhHHHHHH
Q 026849           51 VTAFGAVLHVLSTSLLGITAI-TMA---NTIA-GEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAVAGL  125 (232)
Q Consensus        51 ~~~~~GlGHtls~~llGl~~i-~lg---~~i~-~~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~H~H~~~~~k~~~~~L  125 (232)
                      .++...+|+.+.-.+...+.. .++   .+.| ....++++.+..|+++|...+ ++-.+....  +.++..+++..-+.
T Consensus        25 ~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~-~~~~~~~~~--~~~~~~~~~~~~~f  101 (191)
T PF01810_consen   25 AGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLL-RSKFSSKSS--TQSEAKKQSKSKSF  101 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH-hcccCcchh--hhhhhccccHHHHH
Confidence            455566777777776665553 222   2233 256778999999999999444 332221111  11111101111122


Q ss_pred             HHhh---ccccch-----hHHHHHHHhcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 026849          126 VLVP---ALSPCA-----TTLPVFLAVGNSS-SMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSV  196 (232)
Q Consensus       126 v~~l---~lsPc~-----a~lpl~L~a~~~~-~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v  196 (232)
                      ..|+   ..-|=.     ++.|.+... +.. .....+.+.+..++..-...+..+..+..++++.++.. +.+.++|.+
T Consensus       102 ~~g~~~~~~NPk~il~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~i~~~~g~~  179 (191)
T PF01810_consen  102 LTGFLLNLLNPKAILFWLAVFPQFISP-EYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIR-WINRISGLL  179 (191)
T ss_pred             HHHHHHHHHhHHHHHHHHHhhhcccCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHH
Confidence            2222   222200     111222221 222 33333334444555555555555555555566544444 899999999


Q ss_pred             HHHHhhhhh
Q 026849          197 LCLVGILTL  205 (232)
Q Consensus       197 ~i~~Gi~~~  205 (232)
                      ++++|+...
T Consensus       180 li~~av~l~  188 (191)
T PF01810_consen  180 LIGFAVYLL  188 (191)
T ss_pred             HHHHHHHHH
Confidence            999998654

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>PF13795 HupE_UreJ_2: HupE / UreJ protein

Probab=96.71  E-value=0.02  Score=48.12  Aligned_cols=137  Identities=15%  Similarity=0.127  Sum_probs=87.5

Q ss_pred             HHHhhhhccc-CCCchhhhhhcc---ccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 026849           18 ATVSLLHSFI-PTHWLPFSIVGR---AQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVV   93 (232)
Q Consensus        18 f~Lg~lHAl~-PdH~~pv~~i~~---~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG~~LI~   93 (232)
                      |-+|+.|-+. .||.+=+..+.-   .+  +.+|.+..--.-.+||++|+.+-..-.+    ++ +...+|.+.+.-.++
T Consensus         2 ~~~G~~HIl~G~DHlLFll~L~l~~~~~--~~~~ll~~vTaFTlgHSiTL~L~~~~~v----~~-~~~~VE~lIAlSI~~   74 (151)
T PF13795_consen    2 FKLGIEHILTGYDHLLFLLALVLPFLFR--SWKRLLKLVTAFTLGHSITLALAALGIV----SV-PSRLVEALIALSIAF   74 (151)
T ss_pred             hHhHHHHHHhhHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccc----CC-ChHHHHHHHHHHHHH
Confidence            4579999999 899996553332   33  3445666655668999999876554332    22 478899999999999


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCcchhHHHHHHHHhhccccchhHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026849           94 LGGSYILLFISGKGGHSHSHNQPMEKMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALS  173 (232)
Q Consensus        94 lG~~yl~~~~~~~~~h~H~H~~~~~k~~~~~Lv~~l~lsPc~a~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~~t~l~  173 (232)
                      ..+.++    ++++ ..  .+.+.--....|++||+++|-  ++--+    .-.+.+.+.-.+-|.+|.=+|.+.++.+.
T Consensus        75 ~A~~nl----~~~~-~~--~~~~~~v~~~FGLiHGlGFA~--~l~~~----~~~~~~~~~~Ll~FNlGVElgQl~iv~~~  141 (151)
T PF13795_consen   75 VALENL----RRPK-RS--ARRRWLVAFGFGLIHGLGFAS--ALKEL----GLPSDQLLLALLSFNLGVELGQLAIVLLV  141 (151)
T ss_pred             HHHHHh----hccc-cc--cccHHHHHHHHHHHHHHHHHH--HHHHh----CCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999666    1110 00  000111236669999999855  43322    11123455566789999999998888755


Q ss_pred             H
Q 026849          174 F  174 (232)
Q Consensus       174 ~  174 (232)
                      .
T Consensus       142 l  142 (151)
T PF13795_consen  142 L  142 (151)
T ss_pred             H
Confidence            4

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=96.63  E-value=0.17  Score=44.18  Aligned_cols=55  Identities=16%  Similarity=0.107  Sum_probs=32.2

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 026849           51 VTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGK  106 (232)
Q Consensus        51 ~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG~~LI~lG~~yl~~~~~~~  106 (232)
                      ..+..|+-+.+.+.+=-.+.-.++..++ .++.+++.+.+|+.+|++.++..++++
T Consensus        32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~-~~~~~~ig~~iLi~iG~~mi~~~~~~~   86 (206)
T TIGR02840        32 SNLIIAVISGLFIFISMLLGKFLAKFLP-PKVTEILGAFILIAIGIWIIYNAFRPK   86 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3444455555444332222233444442 236789999999999998885555543

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed

Probab=96.34  E-value=0.57  Score=40.45  Aligned_cols=176  Identities=16%  Similarity=0.158  Sum_probs=87.9

Q ss_pred             HhhhhcccCCCchhhh-hhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc-c--------chhHHHHHHH
Q 026849           20 VSLLHSFIPTHWLPFS-IVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIA-G--------EDTVHKLASL   89 (232)
Q Consensus        20 Lg~lHAl~PdH~~pv~-~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~-~--------~~~~e~~vG~   89 (232)
                      +++.=+++|......+ .+.| +| ..++.    ...-.|..+..+..|.+.......++ .        ...++.+.|+
T Consensus         4 LAl~~a~sP~~i~~~vlll~~-~r-~~~~~----~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv   77 (214)
T PF11139_consen    4 LALVDALSPLPIVIAVLLLSR-PR-PRRNL----LAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGV   77 (214)
T ss_pred             HHHHHHhChHHHHHHHHHhcC-CC-ccchh----HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHH
Confidence            3444456777776544 4554 33 22332    23345777778888877765554433 1        2444667777


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCC----------cchhHHHHHHHHhhccccch----hHHHHHHHhcchhhHHHHHH
Q 026849           90 LLVVLGGSYILLFISGKGGHSHSHNQ----------PMEKMAVAGLVLVPALSPCA----TTLPVFLAVGNSSSMMVLAI  155 (232)
Q Consensus        90 ~LI~lG~~yl~~~~~~~~~h~H~H~~----------~~~k~~~~~Lv~~l~lsPc~----a~lpl~L~a~~~~~~~~lyi  155 (232)
                      .|+++|.    +..++++....+-..          +.-++...|+..+..-.++.    +..-...++..+......+.
T Consensus        78 ~ll~~a~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~~~l  153 (214)
T PF11139_consen   78 LLLLLAV----RVWRRRPRPDPPSRPPRWLARLDSASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQVVAL  153 (214)
T ss_pred             HHHHHHH----HHhhcccccCCCCCchhhhhhhhcCCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            7777777    333322111100000          01134555666664332321    11122212222324444555


Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHhhccchhHHHHHHHHHHHHHHHHHhhhhhh
Q 026849          156 IVLLLSTITVMTSLVALSF-------YGASQLKFHWVERYDKLLVGSVLCLVGILTLI  206 (232)
Q Consensus       156 lvF~~gti~gM~~~t~l~~-------~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~  206 (232)
                      ++|.+-.............       .-++|. .+|++|+.+.+.+.+..++|+....
T Consensus       154 ~~y~~i~~~~~~~pll~~~~~~~r~~~~l~r~-~~wl~~~~~~i~~~i~~i~G~~l~~  210 (214)
T PF11139_consen  154 VVYCLIASLPALLPLLAYLVAPERAEPWLERL-RSWLRRHSRQILAVILLIVGALLLG  210 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHccHHHHHHHHHHHHHHHHH
Confidence            5665554444333333222       122344 4788888889999999999986543

Currently no function for this family is known.

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=96.19  E-value=0.45  Score=39.62  Aligned_cols=150  Identities=11%  Similarity=0.102  Sum_probs=69.0

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHH-HHH---hhcc-cchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC---CCcchhHH
Q 026849           50 FVTAFGAVLHVLSTSLLGITAI-TMA---NTIA-GEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSH---NQPMEKMA  121 (232)
Q Consensus        50 ~~~~~~GlGHtls~~llGl~~i-~lg---~~i~-~~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~H~H---~~~~~k~~  121 (232)
                      +.++...+|..+..++...+.. .++   .+.| ....++++.+..|+.+|...+    +.+....++.   +.+.+++.
T Consensus        19 ~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~----~~~~~~~~~~~~~~~~~~~~~   94 (185)
T TIGR00949        19 RAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKML----RKKSKKQSPAAQVELAEQTTW   94 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HccccccccccccccccCccH
Confidence            3455556777777666655442 232   2333 256678889999999998322    2211111111   11111111


Q ss_pred             HHHHHHhh---cccc-----chhHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 026849          122 VAGLVLVP---ALSP-----CATTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLV  193 (232)
Q Consensus       122 ~~~Lv~~l---~lsP-----c~a~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~  193 (232)
                      ..+..-|+   .+-|     ..++.|-+.....+..+.+.+...+...........+.+..+..++.+.++..|+.+.+.
T Consensus        95 ~~~f~~g~~~~~~NPk~ilf~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~  174 (185)
T TIGR00949        95 KKSFRRGLLTNLSNPKAVLFFISIFSQFINPNTPTWQLIVLGLTIIVETILWFYVLSLIFSRPAVRRKYSKQQKWIDGIT  174 (185)
T ss_pred             HHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence            11222222   2222     112233332211111222222222223333333333333333223334567888999999


Q ss_pred             HHHHHHHhhh
Q 026849          194 GSVLCLVGIL  203 (232)
Q Consensus       194 G~v~i~~Gi~  203 (232)
                      |.+++++|+.
T Consensus       175 g~~l~~~~v~  184 (185)
T TIGR00949       175 GALFVGFGIR  184 (185)
T ss_pred             HHHHHHHHhc
Confidence            9999988863

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=96.14  E-value=0.22  Score=43.34  Aligned_cols=148  Identities=19%  Similarity=0.274  Sum_probs=78.6

Q ss_pred             chhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC-----cchh
Q 026849           45 LSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQ-----PMEK  119 (232)
Q Consensus        45 ~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~H~H~~-----~~~k  119 (232)
                      .+|-..+|=+.|.+=.+...+++    .++..+-+.++.=.+-|++=+++|++.+    .++++..-+..+     +..+
T Consensus        24 ~~~~I~~GqylG~~~Lv~~Sl~~----~~~l~~ip~~wiLGlLGliPI~lGi~~l----~~~~~~~e~~~~~~~~~~~~~   95 (191)
T PF03596_consen   24 RRRQIVIGQYLGFTILVLASLLG----AFGLLFIPPEWILGLLGLIPIYLGIKAL----FSGEDDDEEEAEEKLNSPKSN   95 (191)
T ss_pred             ChhhhhhhHHHHHHHHHHHHHHH----HHHHHhCCHHHHHHHHHHHHHHHHHHHH----HcCCCcccccccccccccccc
Confidence            34456666666654333333333    2332222345665567899999999555    332211111111     1112


Q ss_pred             HHHHHHHHh-hccccch--hHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHH
Q 026849          120 MAVAGLVLV-PALSPCA--TTLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLK--FHWVERYDKLLVG  194 (232)
Q Consensus       120 ~~~~~Lv~~-l~lsPc~--a~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~--~~~~ery~~~i~G  194 (232)
                      +.+.....- .+-++|.  -.+|++  +..+..+...++++|.+.     +.+-....+-..+.+  .+.+|||.+.+.-
T Consensus        96 ~~i~~Va~iTiAnGgDNigIYiP~F--a~~s~~~l~v~l~vF~il-----v~v~c~la~~l~~~p~i~~~leryg~~l~p  168 (191)
T PF03596_consen   96 SLILTVAAITIANGGDNIGIYIPLF--ASLSLAELIVILIVFLIL-----VGVWCFLAYKLARIPIIAEFLERYGRWLVP  168 (191)
T ss_pred             chhHHhhhhhhhcCCCeEEEeehhh--hcCCHHHHHHHHHHHHHH-----HHHHHHHHHHHhCChHHHHHHHHhcccHHH
Confidence            223222111 4556676  456876  444555666666666432     223333333332222  6899999999999


Q ss_pred             HHHHHHhhhhhhc
Q 026849          195 SVLCLVGILTLIF  207 (232)
Q Consensus       195 ~v~i~~Gi~~~~~  207 (232)
                      .+.+++|+....+
T Consensus       169 ~v~I~LGi~Il~e  181 (191)
T PF03596_consen  169 IVYIGLGIYILIE  181 (191)
T ss_pred             HHHHHhCceeeEe
Confidence            9999999865443

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>PRK09304 arginine exporter protein; Provisional

Probab=95.77  E-value=1.1  Score=38.44  Aligned_cols=183  Identities=13%  Similarity=-0.029  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhhhcccCCCchhhhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHH-HHHHH---hhcc-cchhHHHHH
Q 026849           13 TIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGIT-AITMA---NTIA-GEDTVHKLA   87 (232)
Q Consensus        13 il~~gf~Lg~lHAl~PdH~~pv~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~-~i~lg---~~i~-~~~~~e~~v   87 (232)
                      ....|+.+|+.=++.||=-.-++ ++++-+  .++    ++..++|-.....+.... .+.++   .+.| ....++++.
T Consensus         4 ~~~~g~~~g~~~~~tPGP~~~~v-~~~~~~--~~~----~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~G   76 (207)
T PRK09304          4 YYFQGFALGAAMILPLGPQNAFV-MNQGIR--RQY----HLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGG   76 (207)
T ss_pred             HHHHHHHHHHHHHhccChHHHHH-HHHHHc--ccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999987433322 222222  122    334444444444443332 12222   3334 356678888


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCCCCc--c-hhHHHHHHHHhhccccchh-----HHHHHHHhcchh-hHHHHHHHHH
Q 026849           88 SLLLVVLGGSYILLFISGKGGHSHSHNQP--M-EKMAVAGLVLVPALSPCAT-----TLPVFLAVGNSS-SMMVLAIIVL  158 (232)
Q Consensus        88 G~~LI~lG~~yl~~~~~~~~~h~H~H~~~--~-~k~~~~~Lv~~l~lsPc~a-----~lpl~L~a~~~~-~~~~lyilvF  158 (232)
                      +.-|+++|.-.+ |+-+++....++++..  . .+....|+..- ..-|=..     +.+-++.+.+.. .+..... .+
T Consensus        77 a~YLlyLg~~~~-rs~~~~~~~~~~~~~~~~~~~~~f~~G~~~~-l~NPKa~lf~~~~~~~~~~~~~~~~~~~~~~~-~~  153 (207)
T PRK09304         77 VAFLLWYGFGAF-KTAMSSNIELASAEVMKQGRWKIIATMLAVT-WLNPHVYLDTFVVLGSLGGQLDVEPKRWFALG-TI  153 (207)
T ss_pred             HHHHHHHHHHHH-HHhcccccccccccccCccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHhccCcchhHHHHHH-HH
Confidence            999999998333 3211011111111111  1 11122222221 2222211     122222222221 2221221 11


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhhh
Q 026849          159 LLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLI  206 (232)
Q Consensus       159 ~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~  206 (232)
                       +.+.......+.+..+..++++.++..|+.+.+.|.+++.+|+....
T Consensus       154 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~in~~~g~~l~~~~~~l~~  200 (207)
T PRK09304        154 -SASFLWFFGLALLAAWLAPRLRTAKAQRIINLFVGCVMWFIALQLAR  200 (207)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence             22334444444444444445555678889999999999999986643

>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease

Probab=95.53  E-value=0.044  Score=49.26  Aligned_cols=24  Identities=17%  Similarity=-0.063  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 026849          151 MVLAIIVLLLSTITVMTSLVALSF  174 (232)
Q Consensus       151 ~~lyilvF~~gti~gM~~~t~l~~  174 (232)
                      ...+..+|+++.+.||........
T Consensus       176 ~~~~~~~~~~~f~~Gm~p~~~a~~  199 (282)
T PF03824_consen  176 PISWILLLGLGFAAGMVPCPGALG  199 (282)
T ss_pred             CchHHHHHHHHHHhhccccHHHHH
Confidence            445667888888888887666333

Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane

>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]

Probab=95.21  E-value=0.025  Score=49.05  Aligned_cols=138  Identities=18%  Similarity=0.293  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHHHHHHHH---HhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc-ch------hHHHHHHH
Q 026849           57 VLHVLSTSLLGITAITM---ANTIAGEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQP-ME------KMAVAGLV  126 (232)
Q Consensus        57 lGHtls~~llGl~~i~l---g~~i~~~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~H~H~~~-~~------k~~~~~Lv  126 (232)
                      +||-+.++.+-++.+.+   ++.+ +++++-.+-|++=+.+|+++++..-+ +      -+++ ++      +.....-+
T Consensus        41 ~GQyLGs~~lilaSL~~a~v~~fv-p~e~I~glLGLIPi~LGik~l~~~d~-d------~e~~~~e~L~~~~~k~lv~tV  112 (205)
T COG4300          41 LGQYLGSVILILASLLFAFVLNFV-PEEWILGLLGLIPIYLGIKVLILGDD-D------GEEEAKEELAFKKNKNLVGTV  112 (205)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhhC-cHHHHHHHHhHHHHHHhhHHhhcccC-c------CchhhhHHHHhccccceEEEE
Confidence            35555555544444322   3333 47777778899999999977743322 1      1111 11      11122333


Q ss_pred             Hhhccccchh-----HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHH
Q 026849          127 LVPALSPCAT-----TLPVFLAVGNSSSMMVLAIIVLLLSTITVMTSLVALSFYGASQLK--FHWVERYDKLLVGSVLCL  199 (232)
Q Consensus       127 ~~l~lsPc~a-----~lpl~L~a~~~~~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~--~~~~ery~~~i~G~v~i~  199 (232)
                      ....++-|-+     +.|++.  ..+....++++++|.+.  +..++++   .+-.+++.  .+.+|||.+.+...+.++
T Consensus       113 ~~vT~AscG~DNIgvyvP~F~--tl~~~~llv~l~vF~v~--I~iL~~~---a~~la~ip~I~evlEk~sr~i~~~V~I~  185 (205)
T COG4300         113 AIVTFASCGADNIGVFVPYFA--TLNLANLLVALLVFLVM--IYILVFL---AQKLAQIPPIGEVLEKYSRWIVAFVYIG  185 (205)
T ss_pred             EEEEEeccCCcceEEEeeeee--cccHHHHHHHHHHHHHH--HHHHHHH---HHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence            3445555654     468773  33345566677777543  2222222   22223332  689999999999999999


Q ss_pred             HhhhhhhccC
Q 026849          200 VGILTLIFHD  209 (232)
Q Consensus       200 ~Gi~~~~~~~  209 (232)
                      +|+.......
T Consensus       186 LGlfIl~E~g  195 (205)
T COG4300         186 LGLFILYENG  195 (205)
T ss_pred             hhheeEEeCC
Confidence            9987655443

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=95.11  E-value=1.3  Score=37.71  Aligned_cols=28  Identities=25%  Similarity=0.172  Sum_probs=21.2

Q ss_pred             hccchhHHHHHHHHHHHHHHHHHhhhhh
Q 026849          178 SQLKFHWVERYDKLLVGSVLCLVGILTL  205 (232)
Q Consensus       178 ~~~~~~~~ery~~~i~G~v~i~~Gi~~~  205 (232)
                      ++.+.++..|+.+.+.|.+.+.+|+...
T Consensus       174 ~~~~~~~~~~~i~~~~g~~li~~~~~l~  201 (205)
T PRK10520        174 RWIKGPKQMKALNKIFGSLFMLVGALLA  201 (205)
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444567778889999999999997653

>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation

Probab=94.94  E-value=0.2  Score=43.08  Aligned_cols=77  Identities=22%  Similarity=0.271  Sum_probs=56.1

Q ss_pred             hccccch-hHHHHHHHhcchh------hH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 026849          129 PALSPCA-TTLPVFLAVGNSS------SM---MVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLC  198 (232)
Q Consensus       129 l~lsPc~-a~lpl~L~a~~~~------~~---~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i  198 (232)
                      ..++||. +++|++++.....      .+   .+...+.|..|..+....+.......-+..+  ...+|...+.|.+.+
T Consensus         8 ~~~sPC~lp~lp~~l~~~~~~~~~~~~~~~~~~~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~--~~~~~~~~i~g~~~i   85 (211)
T PF02683_consen    8 SSFSPCVLPVLPLYLSYIAGSGASSRRKGKRVALLLGLAFVLGFALVFALLGLGAGALGSFFG--QISPWLYIIAGVLLI   85 (211)
T ss_pred             HhcCcHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            5789998 7888888443332      11   4677788888888888888776665544443  567888999999999


Q ss_pred             HHhhhhhhc
Q 026849          199 LVGILTLIF  207 (232)
Q Consensus       199 ~~Gi~~~~~  207 (232)
                      ++|+.....
T Consensus        86 ~~Gl~~l~~   94 (211)
T PF02683_consen   86 LFGLSLLGL   94 (211)
T ss_pred             HHHHHHHHh
Confidence            999976543

DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane

>PRK10958 leucine export protein LeuE; Provisional

Probab=94.92  E-value=2.2  Score=36.82  Aligned_cols=23  Identities=13%  Similarity=-0.032  Sum_probs=18.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhh
Q 026849          182 FHWVERYDKLLVGSVLCLVGILT  204 (232)
Q Consensus       182 ~~~~ery~~~i~G~v~i~~Gi~~  204 (232)
                      .++..|+.+.+.|.+++.+|+..
T Consensus       185 ~~~~~~~i~~~~g~~l~~~~i~l  207 (212)
T PRK10958        185 RKKLAAGGNSLVGLLFVGFAAKL  207 (212)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788899999999999765

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=94.77  E-value=2.3  Score=36.21  Aligned_cols=22  Identities=9%  Similarity=0.111  Sum_probs=17.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhh
Q 026849          183 HWVERYDKLLVGSVLCLVGILT  204 (232)
Q Consensus       183 ~~~ery~~~i~G~v~i~~Gi~~  204 (232)
                      ++.+|+.+.+.|.+++.+|+..
T Consensus       172 ~~~~~~i~~~~g~~l~~~a~~l  193 (195)
T PRK10323        172 RQYGRQLNIVLALLLVYCAVRI  193 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788899999999998753

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=92.48  E-value=6.5  Score=33.96  Aligned_cols=151  Identities=19%  Similarity=0.149  Sum_probs=69.6

Q ss_pred             HHHHHhhhHHHHHHHHHHHH-HHHH---hhcc-cchhHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCCCc-ch---hH
Q 026849           51 VTAFGAVLHVLSTSLLGITA-ITMA---NTIA-GEDTVHKLASLLLVVLGGSYILLFISGKGGHS-HSHNQP-ME---KM  120 (232)
Q Consensus        51 ~~~~~GlGHtls~~llGl~~-i~lg---~~i~-~~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~-H~H~~~-~~---k~  120 (232)
                      .+...++||.....+.-... ..++   .+.| ....+.++.+.-|+++|+    +.+|.++... .+.... ..   |.
T Consensus        38 ~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~----~~~ra~~~~~~~~~~~~~~~~~~~~  113 (208)
T COG1280          38 AGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGW----KALRAGGAALAEEAAGAPSSSRRKA  113 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHhcccccccccccccccchhHHH
Confidence            44555667665554444333 1222   2222 245667888888888888    3333321111 111111 11   12


Q ss_pred             HHHHHHHhhcccc-----chhHHHHHHHhcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 026849          121 AVAGLVLVPALSP-----CATTLPVFLAVGNSS--SMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLV  193 (232)
Q Consensus       121 ~~~~Lv~~l~lsP-----c~a~lpl~L~a~~~~--~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~  193 (232)
                      ...|+..-+ +=|     -.++.|-+.....+.  .+.+....++.+-....+..........-+.++.++..|+.+.+.
T Consensus       114 f~~G~~~~l-~NPK~~lf~la~~pqfv~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  192 (208)
T COG1280         114 FRRGLLVNL-LNPKAILFFLAFLPQFVDPGAGLVLLQALILGLVFILVGFVVLALYALLAARLRRLLRRPRASRIINRLF  192 (208)
T ss_pred             HHHHHHHHh-hCcHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            222333321 111     123444444333322  222222233333333333333333222223333356899999999


Q ss_pred             HHHHHHHhhhhhh
Q 026849          194 GSVLCLVGILTLI  206 (232)
Q Consensus       194 G~v~i~~Gi~~~~  206 (232)
                      |.+++.+|+....
T Consensus       193 G~~li~~g~~l~~  205 (208)
T COG1280         193 GVLLIGFGVKLAL  205 (208)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987653

>PRK11111 hypothetical protein; Provisional

Probab=92.45  E-value=7.1  Score=34.34  Aligned_cols=19  Identities=26%  Similarity=0.392  Sum_probs=15.6

Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 026849           81 DTVHKLASLLLVVLGGSYI   99 (232)
Q Consensus        81 ~~~e~~vG~~LI~lG~~yl   99 (232)
                      +.++...|++|..+|+-.+
T Consensus        76 ~afrIaGGiiL~~ial~Ml   94 (214)
T PRK11111         76 DSFRIAGGILVVTIAMSMI   94 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            6678999999999999443

>COG4280 Predicted membrane protein [Function unknown]

Probab=91.67  E-value=3.9  Score=36.35  Aligned_cols=181  Identities=18%  Similarity=0.165  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHhhhhcccCCCchhhhhhccccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc--cchhHHHHHH
Q 026849           11 LSTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIA--GEDTVHKLAS   88 (232)
Q Consensus        11 ~sil~~gf~Lg~lHAl~PdH~~pv~~i~~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~--~~~~~e~~vG   88 (232)
                      +|+...+|..++.--.|..=.  +.++++.++|+.   ..++...|+.=+      -...+.+|..+.  +-+++++++|
T Consensus         3 wsi~lAAl~sSlvElvEa~aI--a~avg~~~~wr~---al~ga~lglalv------l~l~lvlGk~L~lvPln~lqiv~g   71 (236)
T COG4280           3 WSIFLAALGSSLVELVEAGAI--AAAVGNIYKWRL---ALIGAVLGLALV------LILTLVLGKLLYLVPLNYLQIVSG   71 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHhhhhhccccH---HHHHHHHHHHHH------HHHHHHHccceeeeechHHHHHHH
Confidence            677777777777666664322  346777788874   344554444322      233446664443  4688999999


Q ss_pred             HHHHHHHHHHHHHHHhc--cCCCCCCCCC-------cc-hh--HHHHHHHHh--hccccch-hHHHHHHHhcchhhHHHH
Q 026849           89 LLLVVLGGSYILLFISG--KGGHSHSHNQ-------PM-EK--MAVAGLVLV--PALSPCA-TTLPVFLAVGNSSSMMVL  153 (232)
Q Consensus        89 ~~LI~lG~~yl~~~~~~--~~~h~H~H~~-------~~-~k--~~~~~Lv~~--l~lsPc~-a~lpl~L~a~~~~~~~~l  153 (232)
                      ++|+.+|--......||  ++...|..+.       ++ +.  +....++.+  .++=.-| .++.+.+.+.++++.-..
T Consensus        72 vLLllFG~rw~Rsavrr~ag~rkg~~ee~leE~~~ldq~e~g~~~la~l~~fk~v~LeglEv~~iVialgaa~sqwleAi  151 (236)
T COG4280          72 VLLLLFGYRWIRSAVRRFAGIRKGGGEEKLEEGIVLDQEEEGFSKLALLVVFKVVALEGLEVSLIVIALGAASSQWLEAI  151 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHhchhccCchhhHhhhhhcccccccchhhhHHHHhHHHHHhhheeeeeeeeechhhhHHHHHH
Confidence            99999998666433333  1223332221       11 11  122112222  2222222 333455555555532222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhhhccC
Q 026849          154 AIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIFHD  209 (232)
Q Consensus       154 yilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~~~~  209 (232)
                      .-..|  .+++.| .++.++-.-..|++    |+..|...|..+..+|........
T Consensus       152 ~gagf--A~vlvl-vl~~~lh~plarvp----e~~lKfvag~lL~sfGtfWlgegv  200 (236)
T COG4280         152 MGAGF--ASVLVL-VLTAILHSPLARVP----EPHLKFVAGALLFSFGTFWLGEGV  200 (236)
T ss_pred             HHHHH--HHHHHH-HHHHHhccHHhhCC----chhHHHHHHHHHHHhhHHHhcccc
Confidence            22222  222222 23333333444553    566789999999999987765544

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=90.20  E-value=11  Score=32.64  Aligned_cols=19  Identities=5%  Similarity=0.202  Sum_probs=15.5

Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 026849           81 DTVHKLASLLLVVLGGSYI   99 (232)
Q Consensus        81 ~~~e~~vG~~LI~lG~~yl   99 (232)
                      +.++...|++|...|+-.+
T Consensus        70 ~af~IaGGiiL~~ia~~ml   88 (203)
T PF01914_consen   70 PAFRIAGGIILFLIALEML   88 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            6678999999999999444

These proteins may be transporters. ; GO: 0016021 integral to membrane

>TIGR00948 2a75 L-lysine exporter

Probab=89.17  E-value=12  Score=31.09  Aligned_cols=45  Identities=13%  Similarity=0.022  Sum_probs=29.9

Q ss_pred             HHHHhhhHHHHHHHHHHHH-HHHH---hhcc-cchhHHHHHHHHHHHHHH
Q 026849           52 TAFGAVLHVLSTSLLGITA-ITMA---NTIA-GEDTVHKLASLLLVVLGG   96 (232)
Q Consensus        52 ~~~~GlGHtls~~llGl~~-i~lg---~~i~-~~~~~e~~vG~~LI~lG~   96 (232)
                      ++..++|+.....+...+. +.++   .+.| ..+.+.++.+.-|+++|.
T Consensus        22 g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~   71 (177)
T TIGR00948        22 VLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGF   71 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence            6667788887777665544 2232   2233 256678888999999998

>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.53  E-value=4.2  Score=35.94  Aligned_cols=81  Identities=26%  Similarity=0.319  Sum_probs=45.2

Q ss_pred             HHHHHh--hccccch-hHHHHHHHhcchh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 026849          123 AGLVLV--PALSPCA-TTLPVFLAVGNSS-----SMMVLAIIVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVG  194 (232)
Q Consensus       123 ~~Lv~~--l~lsPc~-a~lpl~L~a~~~~-----~~~~lyilvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G  194 (232)
                      .+...|  -++|||. +++|.+++.....     +....-.+.|..|.......+......--+.+. .+.+ |.+.+.|
T Consensus        15 ~aflaGlls~lSPCilpllP~~l~~~~~~~~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~-~~~~-~l~~i~g   92 (220)
T COG0785          15 LAFLAGLLSFLSPCVLPLLPAYLSYLAGGSLGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLP-LNRL-YLRYIAG   92 (220)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHH
Confidence            344444  3899998 8889988554443     123333344444444443333332222212222 2233 8889999


Q ss_pred             HHHHHHhhhhh
Q 026849          195 SVLCLVGILTL  205 (232)
Q Consensus       195 ~v~i~~Gi~~~  205 (232)
                      .+++++|....
T Consensus        93 i~li~~Gl~~l  103 (220)
T COG0785          93 ILLILLGLLFL  103 (220)
T ss_pred             HHHHHHHHHHH
Confidence            99999995433

>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM

Probab=87.68  E-value=4.3  Score=34.42  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=18.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhc
Q 026849           81 DTVHKLASLLLVVLGGSYILLFISG  105 (232)
Q Consensus        81 ~~~e~~vG~~LI~lG~~yl~~~~~~  105 (232)
                      .++-.+++++|+++++.-+.+..+.
T Consensus        32 ~~~~~~a~i~l~ilai~q~~~~~~~   56 (182)
T PF09323_consen   32 IPLLYFAAILLLILAIVQLWRWFRP   56 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4456789999999999777444443

The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.

>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type

Probab=87.29  E-value=21  Score=31.83  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=17.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHH
Q 026849           80 EDTVHKLASLLLVVLGGSYILLFI  103 (232)
Q Consensus        80 ~~~~e~~vG~~LI~lG~~yl~~~~  103 (232)
                      ...++.+.+..+++.|+ |.+|+.
T Consensus        67 g~~~h~imal~li~~Gi-~ti~~W   89 (224)
T PF09930_consen   67 GMVIHLIMALLLIYAGI-YTIKKW   89 (224)
T ss_pred             hHHHHHHHHHHHHHHHH-HHHHHH
Confidence            45568899999999999 554554

>COG2119 Predicted membrane protein [Function unknown]

Probab=87.12  E-value=20  Score=31.36  Aligned_cols=119  Identities=12%  Similarity=0.070  Sum_probs=66.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcchhHHHHHHHHhhccc--cchhHH-HHHHHhcchhhHHHHHH
Q 026849           79 GEDTVHKLASLLLVVLGGSYILLFISGKGGHSHSHNQPMEKMAVAGLVLVPALS--PCATTL-PVFLAVGNSSSMMVLAI  155 (232)
Q Consensus        79 ~~~~~e~~vG~~LI~lG~~yl~~~~~~~~~h~H~H~~~~~k~~~~~Lv~~l~ls--Pc~a~l-pl~L~a~~~~~~~~lyi  155 (232)
                      ++.+..+..+..-+++|+|-+ +.-+..++..+   .+.+|+...--+...+++  ++-.=+ -+.|++..+....    
T Consensus        63 ~~~~~~~~~~~~Flafav~~l-~edk~~~~e~~---~~~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~----  134 (190)
T COG2119          63 PERPLAWASGVLFLAFAVWML-IEDKEDDEEAQ---AASPRGVFVTTFITFFLAELGDKTQIATIALAADYHSPWA----  134 (190)
T ss_pred             chhHHHHHHHHHHHHHHHHHh-ccccccccccc---ccccccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCcee----
Confidence            578899999999999999666 22221111110   123344332222221110  111112 2334444333211    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhhhhhc
Q 026849          156 IVLLLSTITVMTSLVALSFYGASQLKFHWVERYDKLLVGSVLCLVGILTLIF  207 (232)
Q Consensus       156 lvF~~gti~gM~~~t~l~~~g~~~~~~~~~ery~~~i~G~v~i~~Gi~~~~~  207 (232)
                       || +||.+||++-+.+...+=+....+-=+|..+.+.|+...++|+.....
T Consensus       135 -V~-~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~  184 (190)
T COG2119         135 -VF-AGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQ  184 (190)
T ss_pred             -ee-hhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             33 789999999998776533333223347888899999999999765443

>PF04955 HupE_UreJ: HupE / UreJ protein; InterPro: IPR007038 This family of proteins are hydrogenase/urease accessory proteins

Probab=86.19  E-value=21  Score=30.62  Aligned_cols=71  Identities=23%  Similarity=0.189  Sum_probs=40.2

Q ss_pred             HHHHHhhhhccc-CCCchhhhhhc---cccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 026849           16 GIATVSLLHSFI-PTHWLPFSIVG---RAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAGEDTVHKLASLLL   91 (232)
Q Consensus        16 ~gf~Lg~lHAl~-PdH~~pv~~i~---~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~~~~~e~~vG~~L   91 (232)
                      .+|.=|+.|=+. +||..+...++   .+++-+.++..-.++       ....++|...-..+..+   ...|..+..=+
T Consensus        20 ~gf~sGl~HPl~GlDHLl~mlavGl~aa~~~~~~~~~~p~~f-------~~~m~~G~~lg~~g~~~---p~~E~~Ia~Sv   89 (180)
T PF04955_consen   20 GGFLSGLLHPLTGLDHLLAMLAVGLWAAQQGGRARWALPLAF-------VAAMLVGAALGLAGVPL---PGVETGIAASV   89 (180)
T ss_pred             hhHHHHhhcccccHHHHHHHHHHHHHHHHhccchHHHHHHHH-------HHHHHHHHHHHhccCCc---hHHHHHHHHHH
Confidence            489999999999 99999866432   222111111121221       12233344333333444   56787777777


Q ss_pred             HHHHH
Q 026849           92 VVLGG   96 (232)
Q Consensus        92 I~lG~   96 (232)
                      +++|+
T Consensus        90 ~~~G~   94 (180)
T PF04955_consen   90 LVLGL   94 (180)
T ss_pred             HHHHH
Confidence            88888

They contain many conserved histidines that are likely to be involved in nickel binding.

>PRK10995 inner membrane protein; Provisional

Probab=85.79  E-value=24  Score=30.95  Aligned_cols=18  Identities=11%  Similarity=0.202  Sum_probs=15.5

Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 026849           81 DTVHKLASLLLVVLGGSY   98 (232)
Q Consensus        81 ~~~e~~vG~~LI~lG~~y   98 (232)
                      ..++...|++|..+|+-.
T Consensus        74 ~a~rIaGGilL~~igi~m   91 (221)
T PRK10995         74 PGLRIAGGLIVAFIGFRM   91 (221)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            678999999999999933

>TIGR00145 FTR1 family protein

Probab=85.64  E-value=29  Score=31.88  Aligned_cols=58  Identities=19%  Similarity=0.283  Sum_probs=37.5

Q ss_pred             cccCccchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc---chhHH----HHHHHHHHHHHHHHH
Q 026849           39 RAQKWTLSRTLFVTAFGAVLHVLSTSLLGITAITMANTIAG---EDTVH----KLASLLLVVLGGSYI   99 (232)
Q Consensus        39 ~~~kws~~rtl~~~~~~GlGHtls~~llGl~~i~lg~~i~~---~~~~e----~~vG~~LI~lG~~yl   99 (232)
                      |+++.+.+|.+..|+..|+   +.++++|.++......++.   .|.+|    .++-+++...+.|..
T Consensus        31 k~~~~~~~~~V~~G~~~gl---~~s~~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~   95 (283)
T TIGR00145        31 RAQRTRLRGWVWVGVLAGF---AACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWML   95 (283)
T ss_pred             hcCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555567788888886664   3444666666555544442   34444    677788888898777

A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=85.26  E-value=7.2  Score=38.94  Aligned_cols=81  Identities=15%  Similarity=0.203  Sum_probs=52.4

Q ss_pred             HHHHh--hccccch-hHHHHHHHhcc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccchhHHHHHHHHHH
Q 026849          124 GLVLV--PALSPCA-TTLPVFLAVGN------SSSMMVLAIIVLLLSTITVMTSLVALSFY-GASQLKFHWVERYDKLLV  193 (232)
Q Consensus       124 ~Lv~~--l~lsPc~-a~lpl~L~a~~------~~~~~~lyilvF~~gti~gM~~~t~l~~~-g~~~~~~~~~ery~~~i~  193 (232)
                      .+..|  +.++||- +++|++.+...      +....+...+.|.+|.+++.+++..+... |.. ++...-..+...+.
T Consensus       172 afl~Glll~l~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~-~~~~~q~~~~~~~~  250 (571)
T PRK00293        172 FFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQ-FQAALQHPYVLIGL  250 (571)
T ss_pred             HHHHHHHHhccchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHH
Confidence            44444  5899998 77888764321      12345666788999999888877775553 421 11111135677888


Q ss_pred             HHHHHHHhhhhh
Q 026849          194 GSVLCLVGILTL  205 (232)
Q Consensus       194 G~v~i~~Gi~~~  205 (232)
                      +++++++|+...
T Consensus       251 ~~l~v~lgL~~~  262 (571)
T PRK00293        251 SILFVLLALSMF  262 (571)
T ss_pred             HHHHHHHHHHHh
Confidence            899999998764

>PRK10229 threonine efflux system; Provisional

Probab=82.97  E-value=28  Score=29.49  Aligned_cols=22  Identities=14%  Similarity=0.270  Sum_probs=18.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhh
Q 026849          183 HWVERYDKLLVGSVLCLVGILT  204 (232)
Q Consensus       183 ~~~ery~~~i~G~v~i~~Gi~~  204 (232)
                      ++..|+.+.+.|.+++.+|+..
T Consensus       181 ~~~~~~in~~~g~~li~~~i~l  202 (206)
T PRK10229        181 QRLAKWIDGFAGALFAGFGIHL  202 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4677788899999999998754

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00